<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques
• Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• Publicly Archive Data
  Uploading data and obtaining an accession number from GenBank, SRA, Zenodo, and Dryad repositories.
• How to write a response to reviewers (Rich Lenski)

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

General Setup and Getting Started Guides

• Computer Setup
  How to get your computer ready for bioinformatics and computational biology.
• Computing Environment Setup
  Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
• Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Specific Topics/Workflows

• Unix Commands Quick Reference
  Collection of useful Unix commands.
• SSH Public Key Authentication
  How to set up login without typing password between Linux machines.
• Command Line File Transfer to UT Box
  How to directly transfer files to/from TACC or other computers to UT Box using LFTP.
• Useful Python snippets for biology
  Short code blocks for performing common tasks in Python

User Guides and Manuals

• TACC – Resources at the Texas Advanced Computing Center.
  • Lonestar6 - high performance cluster user guide
• Genome Sequencing

Deprecated

• Retired Computation Pages
  Older topics that are likely out of date!

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques
• Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• Publicly Archive Data
  Uploading data and obtaining an accession number from GenBank, SRA, Zenodo, and Dryad repositories.
• How to write a response to reviewers (Rich Lenski)

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

General Setup and Getting Started Guides

• Computer Setup
  How to get your computer ready for bioinformatics and computational biology.
• Computing Environment Setup
  Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
• Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Specific Topics/Workflows

• SSH Public Key Authentication
  How to set up login without typing password between Linux machines.
• Command Line File Transfer to UT Box
  How to directly transfer files to/from TACC or other computers to UT Box using LFTP.

• Useful Python snippets for biology
  Short code blocks for performing common tasks in Python

• TACC – Resources at the Texas Advanced Computing Center.
  • Lonestar6 - high performance cluster user guide
• Genome Sequencing

• Retired Computation Pages
  Older topics that are likely out of date!

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Getting Started in Lab

• Getting Started with Lab Techniques
• Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Computer Setup
  How to get your computer ready for bioinformatics and computational biology.
• Computing Environment Setup
  Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
• Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

• Command Line File Transfer to UT Box
  How to directly transfer files to/from TACC or other computers to UT Box using LFTP.

• Unix Commands Quick Reference
  Collection of useful Unix commands.

• TACC – Resources at the Texas Advanced Computing Center.
  • Lonestar6 - high performance cluster user guide
• Genome Sequencing

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques
• Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Computer Setup
  How to get your computer ready for bioinformatics and computational biology.
• Computing Environment Setup
  Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
• Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.
• Useful Python snippets for biology
  Short code blocks for performing common tasks in Python
• Command Line File Transfer to UT Box
  How to directly transfer files to/from TACC or other computers to UT Box using LFTP.
• Working with Git(Hub)
  Links for learning Git and commonly used workflows/commands.
• Unix Commands Quick Reference
  Collection of useful Unix commands.
• SSH Public Key Authentication
  How to set up login without typing password between Linux machines.

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.

• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide
• Retired Computation Pages

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques
• Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques

• Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• How to...
  • Write a response to reviewers (Rich Lenski)

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Getting Started in Lab

• Getting Started with Lab Techniques

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• How to...
  • Write a response to reviewers (Rich Lenski)

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.

• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• How to...
  • Write a response to reviewers (Rich Lenski)

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• How to make a good presentation
  How to make a good presenation under different considerations.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.

Presenting

• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• How to make a good presentation
  How to make a good presenation under different considerations.

Experimental Design and Statistics

• Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Miscellaneous and Humor

• Link List
  Miscellaneous links of interest.
• Science Quotations
  Memorable and humorous sayings related to our research.
• Common terms within our field of work
  Brief intro to some of our most favorite words.

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 
Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

• Barrick Lab Style Guide
  How to format manuscript files.

• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.
• Common terms within our field of work
  Brief intro to some of our most favorite words.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • LaTeX
• TACC – Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.
• Common terms within our field of work
  Brief intro to some of our most favorite words.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc

• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting

• • LaTeX

• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

<-- Preferences start here
 

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Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc
  * tdk/kan sequence as used by Berardinis et al., 2012.
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC – Lonestar | Stampede | Corral | Ranch
  Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc
  * tdk/kan sequence as used by Berardinis et al., 2012.
  
• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC – Lonestar | Stampede | Corral | Ranch
  Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing and Presenting

• Barrick Lab Style Guide
  How to format manuscript files.
• Introduction to Experimental Design
  How to design effective experiments.
• How to Graph Data
  Preferred conventions for presenting data of different kinds.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• Science Quotations
  Memorable and humorous sayings related to our research.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Escherichia coli REL606 Genome Resources: Design Primers | Blast | Genbank | Browser |BioCyc

• Characteristics of the E. coli Genome
• Commonly Used Plasmids
• Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC – Lonestar | Stampede | Corral | Ranch
  Resources at the Texas Advanced Computing Center.
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

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Barrick Lab :: Reference Information

Templates and Spreadsheets

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.

• Characteristics of the E. coli Genome
• Commonly Used Plasmids

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX

• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606

• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide
• Unicode Tables

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

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Barrick Lab :: Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide
• Unicode Tables

Statistics

• Tukey's Jackknife

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

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Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide
• Unicode Tables

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

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Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch

• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide
• Unicode Tables

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils
• MacPorts Guide

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator
• NCBI E-utils

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

Templates and Spreadsheets

• Circular and Rectangular Tube Labels
• Petri Dish Patch Templates

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial
  • Sphinx documentation generator

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing
• Python
  • Biopython and the Biopython Tutorial

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Commonly Used Plasmids
• Bacterial Genetic Code

Computation

• Manuals
  • Introduction to Unix
  • Bash shell scripting
  • Mercurial: The Definitive Guide
  • LaTeX
• TACC
  • Ranger
  • Ranch
• Installation Workarounds
• Genome Sequencing

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606

• Bacterial Genetic Code

Computation

• Installation Workarounds

• Genome Sequencing

Statistics

• Tukey's Jackknife

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids
• Bacterial Genetic Code

Computation

• Introduction to Unix
• Bash shell scripting
• Mercurial: The Definitive Guide
• Installation Workarounds
• LaTeX
• Genome Sequencing

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids
• Bacterial Genetic Code

Computation

• Introduction to Unix

• Mercurial: The Definitive Guide
• Installation Workarounds
• LaTeX
• Genome Sequencing

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Mercurial: The Definitive Guide
• Installation Workarounds
• LaTeX
• Genome Sequencing

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix

• Installation Workarounds
• LaTeX
• Genome Sequencing

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Reference Information
 

Preferences end here -->

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds
• LaTeX

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

Reference Information

• Catalog Numbers

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds
• LaTeX

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

Reference Information

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds
• LaTeX

Writing

• Subtle Grammatical Usage Rules
• Science Quotations

Reference Information

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds
• LaTeX

Writing

• Subtle Grammatical Usage Rules

Reference Information

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds
• LaTeX

Reference Information

Bacteria

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.
• Genome Sequence of REL606
• Plasmids

Computation

• Introduction to Unix
• Installation Workarounds

Reference Information

• Lenski Long-Term E. coli Lines
  Brief summary of stories and idiosyncrasies of each of the 12 lines.

• Genome Sequence of REL606

• Installation Workarounds

Reference Information

• Plasmids
• Genome Sequence of REL606
• Installation Workarounds

Reference Information

• Lenski Long-Term E. coli Lines
• Plasmids

• Installation Workarounds

Reference Information

• Lenski Long-Term E. coli Lines
• Plasmids

Reference Information

• Lenski Long-Term E. coli Lines
• Plasmids

Reference Information

• Lenski Long-Term E. coli Lines
• Plasmids

• Lenski Long-Term E. coli Lines
• Plasmids

Under Development (requires login)

• Mutators in the Long-Term E. coli Lines

Reference Information

• Lenski Long-Term E. coli Lines

Under Development (requires login)

• Mutators in the Long-Term E. coli Lines

Reference Information

• Lenski Long-Term E. coli Lines

Under Development (requires login)

• Mutators in the Long-Term E. coli Lines

• Lenski Long-Term E. coli Lines

• Mutators in the Long-Term E. coli Lines

• Lenski Long-Term E. coli Lines

Long-Term Evolution Experiment

Arabinose Marker

REL606 and REL607 (the ancestral strains of the E. coli long-term evolution experiment) differ by a single point mutation in the araA gene. This mutation was originally present in REL606. It makes an excellent neutral marker for evolution and competition experiments. REL607 was selected as a spontaneous arabinose-utilizing revertant from REL607. Most spontaneous revertants selected from a strain with the REL606 araA allele have the REL607 allele, but other mutations at this amino acid are also known to confer an Ara+ phenotype.

Strain	Phenotype	Color	araA allele
REL606	Ara-	Red	92D (GAC)
REL607	Ara+	White	92G (GGC)
other revertants	Ara+	White	92A (GCC)

Color of colonies when grown on tetrazolium arabinose (TA) plates.

Summary of the Known Idiosyncrasies of Each Long-Term Line

After more than 20 years and 40,000 generations of evolution in the laboratory, the various experimental replicates of the long-term experiment have diverged markedly. Some fail to grow on certain media.

Line	Growth	Other Notes
Ara-1	Normal
Ara-2	>20k some colonies fail to grow on MA/MG/TA. Normal growth on LB.	Stable Polymorphism
Ara-3	Normal
Ara-4	Normal
Ara-5	Normal
Ara-6	Normal
Ara+1	Normal
Ara+2	Normal
Ara+3	Normal
Ara+4	Normal
Ara+5	Normal
Ara+6	>=10k unreliable growth on TA, no growth on MA

Key to Media: minimal arabinose (MA), minimal glucose (MG), tetrazolium arabinose (TA).

Strain	Phenotype	Color	araA allele
REL606	Ara-	Red	92D (GAC)
REL607	Ara+	White	92G (GGC)
other revertants	Ara+	White	92A (GCC)

Color of colonies when grown on tetrazolium arabinose (TA) plates.

Line	Growth	Other Notes
Ara-1	Normal
Ara-2	>20k some colonies fail to grow on MA/MG/TA. Normal growth on LB.	Stable Polymorphism
Ara-3	Normal
Ara-4	Normal
Ara-5	Normal
Ara-6	Normal
Ara+1	Normal
Ara+2	Normal
Ara+3	Normal
Ara+4	Normal
Ara+5	Normal
Ara+6	>=10k unreliable growth on TA, no growth on MA

Key to Media: minimal arabinose (MA), minimal glucose (MG), tetrazolium arabinose (TA).

Long-Term Evolution Experiment

Arabinose Marker

Strain	Phenotype	Color	araA allele
REL606	Ara-	Red	92D (GAC)
REL607	Ara+	White	92G (GGC)
other revertants	Ara+	White	92A (GCC)

Color of colonies when grown on tetrazolium arabinose (TA) plates.

Long-Term Evolution Experiment

Long-Term Evolution Experiment

• Arabinose Marker