Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,835,688 | Δ1 bp | 6.1% | intergenic (‑167/‑111) | dgoR ← / → yidX | predicted DNA‑binding transcriptional regulator/predicted lipoproteinC |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,835,688 | 0 | A→. | 6.1% | 2.2 ‑0.7 ‑0.1 | 33 | intergenic (‑167/‑111) | dgoR/yidX | predicted DNA‑binding transcriptional regulator/predicted lipoproteinC |
Reads supporting (aligned to +/- strand): new base (0/2): ref base (14/17): total (14/19) | ||||||||||
Fisher's exact test strand distribution p-value = 4.96e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.26e-01 |
TACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAG > REL606/3835654‑3835723
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tactacAATTTAGATCACAAAAAGAACAATGCATaa > 1:5133828/1‑36 (MQ=255)
tactacAATTTAGATCACAAAAAGAACAATGCATaa > 1:2172828/1‑36 (MQ=255)
actacAATTTAGATCACAAAAAGAACAATGCATaaa > 1:7145455/1‑36 (MQ=255)
ctacAATTTAGATCACAAAAAGAACAATGCATaaaa > 1:5069134/1‑36 (MQ=255)
atacAATTTAGATCACAAAAAGAACAATGCATaaaa < 1:4561070/35‑1 (MQ=255)
tacAATTTAGATCACAAAAAGAACAATGCATaaaaa > 1:738476/1‑36 (MQ=255)
acAATTTAGATCACAAAAAGAACAATGCATaaaaaa < 1:310210/36‑1 (MQ=255)
acAATTTAGATCACAAAAAGAACAATGCATaaaaaa > 1:1642512/1‑36 (MQ=255)
acAATTTAGATCAAAAAAAGAACAATGCATaaaaaa < 1:3168032/36‑1 (MQ=255)
tAGATCACAAAAAGAACAATGCATAAAAAAATGACa > 1:385125/1‑36 (MQ=255)
aGATCACAAAAAGAACAATGCATAAAAAAATGACAt < 1:1325312/36‑1 (MQ=255)
aGATCAAAAAAAGAACAATGCATAAAAAAATGACAt < 1:2198412/36‑1 (MQ=255)
gATCACAAAAAGAACAATGCATAAAAAAATGACATg > 1:776714/1‑36 (MQ=255)
gATCACAAAAAGAACAATGCATAAAAAAATGACATg > 1:3479529/1‑36 (MQ=255)
tCACAAAAAGAACAATGCATAAAAAAATGACATGCg < 1:3865494/36‑1 (MQ=255)
cacaAAAAGAACAATGCATAAAAAAATGACATGCGt > 1:2186159/1‑36 (MQ=255)
cacaAAAAGAACAATGCATAAAAAAATGACATGCGt < 1:3982072/36‑1 (MQ=255)
aacaAAAAGAACAATGCATAAAAAAATGACATGCGt < 1:7138082/35‑1 (MQ=255)
acaAAAAGAACAATGCATAAAAAAATGACATGCGTc < 1:6390490/36‑1 (MQ=255)
caAAAAGAACAATGCATAAAAAAATGACATGCGTCg > 1:5628198/1‑36 (MQ=255)
aaaaaGAACAATGCATAAAAAAATGACATGCGTCgg > 1:779620/1‑36 (MQ=255)
aaaaGAACAATGCATAAAAAAATGACATGCGTCggg > 1:5264672/1‑36 (MQ=255)
aaaaGAACAATGCATAAAAAAATGACATGCGTCggg < 1:7277717/36‑1 (MQ=255)
aaaGAACAATGCATAAAAAAATGACATGCGTCGGGc < 1:3062586/36‑1 (MQ=255)
aaaGAACAATGCATAAAAAAATGACATGCGTCGGGc < 1:3895041/36‑1 (MQ=255)
gAACAATGCATAAAAAAATGACATGCGTCGGGCAGa > 1:4544209/1‑36 (MQ=255)
aaCAATGCATAAAAAAATGACATGCGGCGGGCAGaa > 1:6125267/1‑36 (MQ=255)
aCAATGCATAAAAAAATGACATGCGTCGGGCAGaaa > 1:1397927/1‑36 (MQ=255)
aCAATGCATAAAAAAATGACATGCGTCGGGCAGaaa > 1:1258283/1‑36 (MQ=255)
aCAATGCATAAAAAAATGACATGCGTCGGGCAGaaa > 1:1920761/1‑36 (MQ=255)
aCAATGCATAAAAAAATGACATGCGTCGGGCAGaaa < 1:3093857/36‑1 (MQ=255)
cAATGCATAAAAAAATGACATGCGTCGGGCAGAAAt < 1:4156886/36‑1 (MQ=255)
aaTGCATAAAAAAATGACATGCGTCGGGCAGAAATc < 1:6224270/36‑1 (MQ=255)
aaTGCATAAAAAAATGACATGCGTCGGGCAGAAATc > 1:1904112/1‑36 (MQ=255)
aTGCAT.AAAAAATGACATGCGTCGGGCAGAAATCTg < 1:2954121/36‑1 (MQ=37)
tGCATAAAAAAATGACATGCGTCGGGCAGAAATCTg < 1:4658945/36‑1 (MQ=255)
tGCAT.AAAAAATGACATGCGTCGGGCAGAAATCTGa < 1:1727262/36‑1 (MQ=37)
gCATAAAAAAATGACATGCGTCGGGCAGAAATCTGa < 1:2959430/36‑1 (MQ=255)
cATAAAAAAATGACATGCGTCGGGCAGAAATCTGaa < 1:867251/36‑1 (MQ=255)
aTAAAAAAATGACATGCGTCGGGCAGAAATCTGaaa < 1:4969671/36‑1 (MQ=255)
aTAAAAAAATGACATGCGTCGGGCAGAAATCTGaaa > 1:1113344/1‑36 (MQ=255)
tAAAAAAATGACATGCGTCGGGCAGAAATCTGaaaa < 1:5359425/36‑1 (MQ=255)
aaaaaaaTGACATGCGTCGGGCAGAAATCTGAAAAg > 1:1045388/1‑36 (MQ=255)
aaaaaaaTGACATGCATCGGGCACAAATCTGtaaaa > 1:2918281/1‑35 (MQ=25)
aaaaaaaAGACATGCGTCGGGCAGAAATCTGAAAAg < 1:1518358/36‑1 (MQ=255)
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TACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAG > REL606/3835654‑3835723
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 28 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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