Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 86.1% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =5 (0.110)28 (0.610) 20/52 NT 84.9% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169745 (0.090)34 (0.640) 25/60 NT 87.2% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 125 total aligned reads displayed.

TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG  >  REL606/2774400‑2774469
                                   |                                  
ttCGAATTGTTTGTGTTCGAACGTAAGCCTCAGGtt                                    >  1:2223162/1‑36 (MQ=255)
ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                    <  1:6648374/36‑1 (MQ=255)
ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                    <  1:3298259/36‑1 (MQ=255)
ctctacatgtgttcagcatatagggggcctcgggtt                                    <  1:6721488‑M2/1‑1 (MQ=255)
ctctacatgtgttcagcatatagggggcctcgggtt                                    <  1:7236525‑M2/1‑1 (MQ=255)
ctctacatgtgttcagcatatagcgggcctcgggtt                                    <  1:7475834‑M2/1‑1 (MQ=255)
 tctacatgtgttcagcatatagggggcctcgggtTg                                   >  1:2654816‑M2/35‑36 (MQ=255)
 tctacatgtgttcagcatatagggagcctcgggtTg                                   <  1:6352216‑M2/2‑1 (MQ=255)
 tCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                                   <  1:8204972/36‑1 (MQ=255)
 tCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                                   <  1:4623018/36‑1 (MQ=255)
  cGAATTGTTTGGGTTGGAACGTAAGCCTCAGGTTGt                                  <  1:658017/36‑1 (MQ=255)
  cGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGt                                  <  1:662986/36‑1 (MQ=255)
  cGAATTGTTGGGGTTCGAACGTAAGCCTCAGGTTGt                                  <  1:5614627/36‑1 (MQ=255)
   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                 >  1:1509723/1‑36 (MQ=255)
    acatgtgttcagcatttagggggcctcgggtTGtat                                >  1:6038669‑M2/32‑35 (MQ=255)
    acatgtgttcagcatatagggggcctcgggtTGTAc                                >  1:2438965‑M2/32‑36 (MQ=255)
    acatgtgttcagcatatagggggcctcgggtTGTAc                                >  1:5103223‑M2/32‑36 (MQ=255)
     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                               >  1:1502018/1‑36 (MQ=255)
      ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                              <  1:6177551/36‑1 (MQ=255)
      atgtgttcagcatatagggggcctcgggtTGTActt                              >  1:7166903‑M2/30‑35 (MQ=255)
      atgtgttcagcatatagggggcctcgggtTGTACTg                              >  1:5017926‑M2/30‑36 (MQ=255)
      atgtgttcagcatatagggggcctcgggtTGTACTg                              <  1:3344851‑M2/7‑1 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                             >  1:1467613/1‑36 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                             <  1:2466944/36‑1 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                             >  1:5118421/1‑36 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                             <  1:1114883/36‑1 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                             >  1:1292836/1‑36 (MQ=255)
         tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                           >  1:2920593/1‑36 (MQ=255)
         tgttcagcatatagggggcctcgggtTGTACTGAcc                           <  1:7012629‑M2/10‑1 (MQ=255)
          ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                          >  1:4962538/1‑36 (MQ=255)
          ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                          >  1:2394223/1‑36 (MQ=255)
           tGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcccc                         >  1:6349050/1‑36 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                        <  1:7376838/36‑1 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                        <  1:4090258/36‑1 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                        >  1:3538086/1‑36 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       <  1:3313290/36‑1 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       <  1:2569260/36‑1 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       >  1:7115238/1‑36 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       <  1:3657302/36‑1 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       >  1:5320453/1‑36 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                       <  1:8126855/36‑1 (MQ=255)
              agcatatagggggcctcgggtTGTACTGACCCCaaa                      >  1:2436732‑M2/22‑36 (MQ=255)
               ttCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                     <  1:8037670/36‑1 (MQ=255)
               gcatatagggggcctcgggtTGTACTGACCCCaaaa                     >  1:1869302‑M2/21‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                    >  1:2394839/1‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                    >  1:316482/1‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                    >  1:3008920/1‑36 (MQ=255)
                catatagggggcctcgggtTGTACTGACCCCaaaaa                    <  1:7217534‑M2/17‑1 (MQ=255)
                 cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAg                   <  1:1380224/36‑1 (MQ=255)
                 atatagggggcctcgggtTGTACTGACCCCAAAAAg                   <  1:8127818‑M2/18‑1 (MQ=255)
                 atatagggggcctcgggtTGTACTGACCCCAAAAAg                   <  1:6363243‑M2/18‑1 (MQ=255)
                  tatagggggcctcgggtTGTACTGACCCCAAAAAGt                  >  1:2833562‑M2/18‑36 (MQ=255)
                   atagggggcctcgggtTGTACTGACCCCAAAAAGtt                 <  1:7594217‑M2/20‑1 (MQ=255)
                    tagggggcctcgggtTGTACTGACCCCAAAAAGTTg                <  1:8046781‑M2/21‑1 (MQ=255)
                    aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg                >  1:4091545/1‑36 (MQ=255)
                    aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg                <  1:3849652/36‑1 (MQ=255)
                     cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg               >  1:7953224/1‑36 (MQ=255)
                     cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg               <  1:6325180/36‑1 (MQ=255)
                     agggggcctcgggtTGTACTGACCCCAAAAAGTTgg               <  1:3944373‑M2/22‑1 (MQ=255)
                     agggggcctcgggtTGTACTGACCCCAAAAAGTTgg               >  1:174459‑M2/15‑36 (MQ=255)
                      gggggcctcgggtTGTACTGACCCCAAAAAGTTGGa              <  1:7543980‑M2/23‑1 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa              >  1:2625911/1‑36 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa              <  1:6281728/36‑1 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa              <  1:6854303/36‑1 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa              >  1:1612340/1‑36 (MQ=255)
                       tAAGCCTCATGTTGTACTTACCCCAAAAAGTTGGAc             <  1:2425946/36‑1 (MQ=18)
                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGTAc             <  1:4226819/36‑1 (MQ=255)
                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc             <  1:1858892/36‑1 (MQ=255)
                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc             <  1:2365403/36‑1 (MQ=255)
                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc             <  1:7769085/36‑1 (MQ=255)
                       ggggcctcgggtTGTACTGACCCCAAAAAGTTGGAc             >  1:2814332‑M2/13‑36 (MQ=255)
                        tggcctcggttTGTACTGACCCCAAAAAGTTGGACa            >  1:2065761‑M2/12‑36 (MQ=255)
                        aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa            >  1:3119434/1‑36 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg           >  1:7084632/1‑36 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg           >  1:8247630/1‑36 (MQ=255)
                          gcctcgggtTGTACTGACCCCAAAAAGCTGGACAGt          >  1:6850397‑M2/10‑36 (MQ=255)
                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt          >  1:2020328/1‑36 (MQ=255)
                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt          <  1:2344473/36‑1 (MQ=255)
                           cctcgggtTGTACTGACCCCATAAAGTTGGACAGtt         <  1:1664532‑M2/28‑1 (MQ=255)
                           cctcgggtTGTACTGACCCCAAAAAGTTGGACAGtt         >  1:4178000‑M2/9‑36 (MQ=255)
                           ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt         >  1:627980/1‑36 (MQ=255)
                            ctcgggtTGTACTGACCCCAAAAAGTTGGACAGTTa        >  1:2080494‑M2/8‑36 (MQ=255)
                            ctcgggtTGTACTGACCCCAAAAAGTTGGACAGTTa        >  1:4628017‑M2/8‑36 (MQ=255)
                            cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa        >  1:1043548/1‑36 (MQ=255)
                             tcgggtTGTACTGACCCCAAAAAGTTGGACAGTTaa       <  1:6946702‑M2/30‑1 (MQ=255)
                             tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa       <  1:2584598/36‑1 (MQ=40)
                              cgggtTGTACTGACCCCAAAAAGTTGGACAGTTaaa      >  1:6955017‑M2/6‑36 (MQ=255)
                              cgagtTGTACTGACCCCAAAAAGTTGGACAGTTaaa      <  1:4018586‑M2/31‑1 (MQ=255)
                              cgagtTGTACTGACCCCAAAAAGTTGGACAGTTaaa      <  1:7040635‑M2/31‑1 (MQ=255)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa      >  1:4543786/1‑36 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa      <  1:5678835/36‑1 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa      <  1:2797792/36‑1 (MQ=38)
                               gggTTGTACTGACCCCAAAAAGATGGAAAGTTAAac     >  1:7272446/2‑36 (MQ=11)
                                ggtTGTACTGACCCCAAAAAGTTTGACAGTTAAaca    <  1:5754725‑M2/33‑1 (MQ=255)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca    >  1:5212321‑M2/4‑36 (MQ=255)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca    >  1:5810141‑M2/4‑36 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac   <  1:5171295‑M2/34‑1 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac   <  1:4014653‑M2/34‑1 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg  >  1:5480800‑M2/2‑36 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg  <  1:4589878‑M2/35‑1 (MQ=255)
                                   |                                  
TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG  >  REL606/2774400‑2774469

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG