New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)46 (1.090) 29/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

GGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGT  >  REL606/241656‑241726
                                   |                                   
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:874765‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:5679851‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:212550‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:4801809‑M1/36‑36 (MQ=255)
tccatttcatcgtacaacaaaatgggtgcagtacag                                     <  1:1717948‑M1/1‑1 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:2707943‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:3623229‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    <  1:1245475‑M1/2‑1 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:5202710‑M1/35‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacagta                                   <  1:5086396‑M1/3‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacagta                                   >  1:4430843‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacagta                                   >  1:256090‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgagtgcagtacagta                                   <  1:3197188‑M1/3‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:4881937‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:465767‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  <  1:4474779‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:3944930‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:253016‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtaaaGTAt                                  <  1:4889487‑M1/4‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaGTATg                                 >  1:2289054‑M1/32‑36 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaGTATg                                 <  1:3651264‑M1/5‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaGTATg                                 <  1:3521634‑M1/5‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGTATGa                                <  1:2739590‑M1/6‑1 (MQ=255)
     ttcatcgtacaacaaaatgggtgcagtacaGTATGa                                >  1:5785424‑M1/31‑36 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGTATGACAg                             <  1:25488‑M1/9‑1 (MQ=255)
         tcgtccaacaaaatgggtgcagtacaGTATGACAGt                            >  1:3540466‑M1/27‑36 (MQ=255)
         tcgtccaacaaaatgggtgcagtacaGTATGACAGt                            >  1:5270115‑M1/27‑36 (MQ=255)
             ccaacaaaatgggtgcagtacaGTATGACAGTCTcc                        >  1:4035110‑M1/23‑36 (MQ=255)
             ccaacaaaatgggtgcagtacaGTATGACAGTCTcc                        >  1:1032580‑M1/23‑36 (MQ=255)
             ccaacaaaatgggtgcagtacaGTATGACAGTCTcc                        >  1:1310372‑M1/23‑36 (MQ=255)
              caacaaaatgggtgcagtacaGTATGACAGTCTCCg                       <  1:5628674‑M1/15‑1 (MQ=255)
              caacaaaatgggtgcagtacaGTATGACAGTCTCCg                       <  1:1662107‑M1/15‑1 (MQ=255)
               aacaaaatgggtgcagtacaGTATGACAGTCTCCgg                      >  1:1534149‑M1/21‑36 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTCCGGa                     <  1:2080949‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTCCGGa                     <  1:5000481‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTACGGa                     <  1:86420‑M1/17‑1 (MQ=255)
                  aaaatgggtgcagtacaGTATGACAGTCTCCGGAAg                   <  1:2568286‑M1/19‑1 (MQ=255)
                  aaaatgggtgcagtacaGTATGACAGTCTCCGGAAg                   <  1:4271802‑M1/19‑1 (MQ=255)
                    aatgggtgcagtacaGTATGACAGTCTCCGGAAGAc                 <  1:2786238‑M1/21‑1 (MQ=255)
                     atgggtgcagtacaGTATGACAGTCTCCGGAAGACg                <  1:632496‑M1/22‑1 (MQ=255)
                      tgggtgcagtacaGTATGACAGTCTCCGGAAGACgg               >  1:2609675‑M1/14‑36 (MQ=255)
                       gggtgcagtacaGTATGACAGTCTCCGGAAGACGgt              >  1:4159425‑M1/13‑36 (MQ=255)
                        ggtgcagtacaGTATGACAGTCTCCGGAAGACGgtt             >  1:905475‑M1/12‑36 (MQ=255)
                           gcagtacaGTATGACAGTCTCCGGAAGACGgttgtt          <  1:3428365‑M1/28‑1 (MQ=255)
                           gcagtacaGTATGACAGTCTCCGGAAGACGgttgtt          >  1:907397‑M1/9‑36 (MQ=255)
                            cagtacaGTATGACAGTCTCCGGAAGACGGttgttg         >  1:5523885‑M1/8‑36 (MQ=255)
                             agtacaGTATGACAGTCTCCGGAAGACGGTTGTTgc        >  1:4158672‑M1/7‑36 (MQ=255)
                              gtacaGTATGACAGTCTCCGGAAGACGGTTGTTgcg       >  1:2615723‑M1/6‑36 (MQ=255)
                               tacaGTATGACAGTCTCCGGAAGACGGTTGTTgcgc      <  1:2147557‑M1/32‑1 (MQ=255)
                                acaGTATGACAGTCTCCGGAAGACGGTTGTTGCGCa     >  1:1526351‑M1/4‑36 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    >  1:5761506‑M1/3‑36 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    >  1:3181125‑M1/3‑36 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    >  1:2961461‑M1/3‑36 (MQ=255)
                                 caGTATGACAGTCCCCGGAAGACGGTTGTTGCGCAc    >  1:4480621‑M1/3‑36 (MQ=255)
                                  aGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACg   >  1:874412‑M1/2‑36 (MQ=255)
                                   GTATGACAGTCTCCTGAAGACGGTTGTTGCGCACGt  >  1:783803‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCAcgg  <  1:4646416‑M1/36‑2 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:744942‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:5920144‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2583162‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2819511‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:5709839‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:136777‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2711849‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:3287029‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2377144‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:5429064‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1432562‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:2270474‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:2255372‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:499948‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:4897520‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:3739130‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1711928‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1861203‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:4791306‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:1959873‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4484563‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:203022‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2052399‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:3874115‑M1/1‑36 (MQ=255)
                                   |                                   
GGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGT  >  REL606/241656‑241726

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG