Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 196,322 C→G 25.3% intergenic (+51/‑41) frr → / → ispC ribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606196,3220C→G25.3% 3.6 ‑3.1 0.022intergenic (+51/‑41)frr/ispCribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
Reads supporting (aligned to +/- strand):  new base (6/0):  ref base (7/9):  total (13/9)
Fisher's exact test strand distribution p-value = 4.61e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

AAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAT  >  REL606/196287‑196357
                                   |                                    
aaaCGCCGCTCAGTAGATCCTTGCGGATCGGCTggc                                      <  1:2170488/36‑1 (MQ=255)
aaaCGCCGCTCAGTAGATCCTTGCGGATCGGCTggc                                      <  1:6493618/36‑1 (MQ=255)
  accccgcTCATTATATCCTTGCTGATCGGCTggcgg                                    <  1:6202344/33‑1 (MQ=19)
  aCGCCGCTCAGTAGATCCTTGCGGATCGGCTggcgg                                    <  1:631201/36‑1 (MQ=255)
    gccgcTCAGTAGATCCTTGCGGATCGGCTGgcgg.cg                                 <  1:2498959/36‑1 (MQ=255)
     ccgcTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGt                                <  1:1754044/36‑1 (MQ=255)
        cTCAGTAGATCCCTGCGGATCGGCTGGGGG.AGgttt                             >  1:1218799/1‑36 (MQ=19)
         tCAGTAGATCCTTGCGGATCGGCTGGGGG.GGttttt                            >  1:6623042/1‑35 (MQ=37)
         tCAGTAGATCCTTGCGGATCGGCTGGCGGCCGtttt                             >  1:4276099/1‑36 (MQ=37)
          cAGTAGATCCTTGCGGATCGGCTGGGGG.CGtttttt                           >  1:397391/1‑34 (MQ=38)
          cAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGc                           <  1:7671923/36‑1 (MQ=255)
           aGTAGATCCGTGCGGATCGGCTGGCGG.CGTTTTGCt                          <  1:8164319/36‑1 (MQ=255)
            gTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCtt                         <  1:1578413/36‑1 (MQ=255)
              aGATCCTTGCGGATCGGCTGGGGG.GGTTTTTTtttt                       >  1:90844/1‑36 (MQ=19)
               gATCCTTGCGGATCGGCTGGGGG.GGTTTTTTttttt                      >  1:1447723/1‑36 (MQ=19)
                 tCCTTGCGGATCGGATGGGGG.CGTTTTTCttttttt                    >  1:2594526/1‑34 (MQ=18)
                  ccTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTAtt                   <  1:3634582/36‑1 (MQ=255)
                    ttGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCt                 <  1:6391510/36‑1 (MQ=255)
                      gCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGt               <  1:6736209/36‑1 (MQ=255)
                      gCGGATCGGCTGGCGG.CGGTTTTCTTTTTATTTTGt               >  1:5278966/1‑36 (MQ=21)
                      ctggATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGt               <  1:5100947/34‑1 (MQ=255)
                         gATCGGCTGGCGG.GGTTTTGTTTTTTTTTCTTtctc            >  1:5387037/1‑36 (MQ=16)
                           tCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCaa          >  1:7778761/1‑36 (MQ=255)
                              gCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAActc       >  1:1263156/1‑36 (MQ=255)
                              gCTGGCGG.CGCTTTGTGTTTTGTTTTTTCTCACctt       >  1:3623987/1‑35 (MQ=0)
                               cTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAActct      >  1:647553/1‑36 (MQ=255)
                                tGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTg     <  1:2826231/36‑1 (MQ=255)
                                  gcgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGa   <  1:1988044/36‑1 (MQ=255)
                                  gcgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGa   <  1:1642247/36‑1 (MQ=255)
                                   cgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGAt  <  1:4760999/36‑1 (MQ=255)
                                   |                                    
AAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAT  >  REL606/196287‑196357

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 17 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG