Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,584,615 | 0 | T→A | 8.8% | 3.0 ‑6.0 ‑0.0 | 70 | 442 | yhiF | predicted DNA‑binding ranscriptional regulator |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/6): ref base (42/21): total (42/28) | ||||||||||
Fisher's exact test strand distribution p-value = 2.47e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 |
TTCTGGAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTGCCATAAACACAATATCATGATGATCCTCAAT > REL606/3584580‑3584650
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ttCTGGAGAAACTGAAAATATCGCTAAAAACGTTCt > 1:7755844/1‑36 (MQ=255)
ttCTGGAGAAACTGAAAATATCGCTAAAAACGTTCt < 1:3132517/36‑1 (MQ=255)
cTGGAGAAACTGAAAATATCGCTAAAAACGTTCT.Ac > 1:7374784/1‑36 (MQ=255)
tGGAGAAACTGAAAATATCGCTAAAAACGTTCT.ACt < 1:4171625/36‑1 (MQ=255)
tGGAGAAACTGAAAATATCGCTAAAAACGTTCT.ACt < 1:7784131/36‑1 (MQ=255)
tGGAGAAACTGAAAATATCGCTAAAAACGTTCT.ACt > 1:3111308/1‑36 (MQ=255)
ggAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTg > 1:4396345/1‑36 (MQ=255)
ggAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTg > 1:3756322/1‑36 (MQ=255)
ggAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTg > 1:2652259/1‑36 (MQ=255)
ggAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTg < 1:7906155/36‑1 (MQ=255)
gagaAACTGAAAATATCGCTAAAAACGTTCT.ACTGc < 1:7423724/36‑1 (MQ=255)
gagaAACTGAAAATATCGCTAAAAACGTTCT.ACTGc < 1:4398514/36‑1 (MQ=255)
agaAACTGAAAATATCGCTAAAAACGTTCT.ACTGcc < 1:3520421/36‑1 (MQ=255)
agaAACTGAAAATATCGCTAAAAACGTTCT.ACTGcc > 1:5563895/1‑36 (MQ=255)
agaAACTGAAAATATCGCTAAAAACGTTCT.ACTGcc > 1:3584173/1‑36 (MQ=255)
agaAACTGAAAATATCGCTAAAAACGTTCT.ACTGcc < 1:2338725/36‑1 (MQ=255)
gaAACTGAAAATATCGCTAAAAACGTTCT.ACTGCCa < 1:3239153/36‑1 (MQ=255)
gaAACTGAAAATATCGCTAAAAACGTTCT.ACTGCCa < 1:7833780/36‑1 (MQ=255)
gaAACTGAAAATATCGCTAAAAACGTTCT.ACTACCa < 1:1716356/36‑1 (MQ=255)
aaaCTGAAAATATCGCTAAAAACGTTCT.ACTGCCAt > 1:7564904/1‑36 (MQ=255)
aaaCTGAAAATATCGCAAAAACCGTTCT.ACTGCCAt < 1:3995003/36‑1 (MQ=37)
aaCTGAAAATATCGCTAAAAACGTTCT.ACTGCCATa > 1:6224798/1‑36 (MQ=255)
aaCTGAAAATATCGCTAAAAACGTTCT.ACTGCCATa > 1:3749693/1‑36 (MQ=255)
aaCTGAAAATATCGCTAAAAACGTTCT.ACTGCCATa > 1:2314081/1‑36 (MQ=255)
aCTGAAAATATCGCTAAAAACGTTCT.ACTGCCATaa > 1:6700385/1‑36 (MQ=255)
aCTGAAAATATCGCTAAAAACGTTCT.ACTGCCATaa > 1:7491716/1‑36 (MQ=255)
taaaaaTATCGCAAAAAACGTTCT.ACTGCCATAAac < 1:2472889/34‑1 (MQ=37)
taaaaaTATCGAAAAAAACGTTCT.ACTGCCATAAac < 1:5324451/34‑1 (MQ=37)
taaaaaTATCAAAAAAAACGTTCT.ACTGCCATAAac < 1:7571151/34‑1 (MQ=21)
tGAAAATATCGCTAAAAACGTTCT.ACTGCCATAAac > 1:1703184/1‑36 (MQ=255)
gaaaaaTATCGTAAAAAACTTTCT.ACTGCCATAAac < 1:6954521/34‑1 (MQ=18)
gAAAATATCGCTAAAAACGTTCT.ACTGCCATAAaca > 1:3604736/1‑36 (MQ=255)
gAAAATATCGCTAAAAACGTTCT.ACTGCCATAAaca > 1:5088198/1‑36 (MQ=255)
gAAAATATCGCTAAAAACGTTCT.ACTGCCATAAaca > 1:89324/1‑36 (MQ=255)
gAAAATATCGCAAAAAACGTTCT.ACTGCCATAAaca < 1:5933026/36‑1 (MQ=255)
aaaaaTATCGCAAAAAACGTACT.ACTGCCATAAaca < 1:7370852/35‑1 (MQ=37)
aaaaTATCGCTAAAAACGTTCT.ACTGCCATAAacac > 1:7170607/1‑36 (MQ=255)
aaaaTATCGCTAAAAACGTTCT.ACTGCCATAAacac > 1:4068882/1‑36 (MQ=255)
aaaaTATCGCTAAAAACGTTCT.ACTGCCATAAacac > 1:1517050/1‑36 (MQ=255)
aaaaTATCGAAAAAACCGTTCT.ACTGCCATAAacac < 1:583436/36‑1 (MQ=25)
atatCGCTAAAAACGTTCT.ACTGCCATAAACACAat > 1:7168442/1‑36 (MQ=255)
atatCGCTAAAAACGTTCT.ACTGCCATAAACACAat > 1:2854618/1‑36 (MQ=255)
tatCGCTAAAAACGTTCT.ACTGCCATAAACACAata > 1:3378800/1‑36 (MQ=255)
gCTAAAAACGTTCT.ACTGCCATAAACACAATATCat > 1:4313285/1‑36 (MQ=255)
gCTAAAAACGTTCT.ACTGCCATAAACACAATATCat > 1:5021763/1‑36 (MQ=255)
gCTAAAAACGTTCT.ACTGCCATAAACACAATATCat > 1:2807292/1‑36 (MQ=255)
aaaaaaaaCTTTCA.ACTGCCATAAACACAATATCat < 1:5230052/33‑1 (MQ=25)
aaaaaaaAGTTCCAACTGCCATAAACACAATATCat < 1:3993326/34‑1 (MQ=16)
tAAAAACGTTCT.ACTGCCATAAACACAATATCatga > 1:4523575/1‑36 (MQ=255)
aaaaaaAGTCCA.ACTGCCATAAACACAATATCatga < 1:2347215/35‑1 (MQ=21)
aaaaaCGTTCT.ACTGCCATAAACACAATATCatgat > 1:3667611/1‑36 (MQ=255)
aaaaaCGTTCT.ACTGCCATAAACACAATATCatgat > 1:2152453/1‑36 (MQ=255)
aaaaaCGTTCT.ACTGCCATAAACACAATATCatgat < 1:2296317/36‑1 (MQ=255)
aaaaaCGTTAT.ACTGCCATAAACACAATATCatgat < 1:155222/36‑1 (MQ=255)
aaaaTGTGCA.ACTGCAATAAACACAATATCatgatg < 1:5059448/36‑1 (MQ=16)
aaaCTTTCA.ACTGCCATAAACACAATATCAtgatga < 1:6985016/36‑1 (MQ=37)
aaaCGTTCT.ACTGCCATAAACACAATATCAtgatga > 1:3737398/1‑36 (MQ=255)
aaaCGTTCT.ACTGCCATAAACACAATATCAtgatga < 1:339581/36‑1 (MQ=255)
aaCGTTAA.ACTGCCATAAACACAATATCATgatgat < 1:5722397/36‑1 (MQ=37)
cGTTCT.ACTGCCATAAACACAATATCATGATGATcc > 1:2034543/1‑36 (MQ=255)
cGTTCT.ACTGCCATAAACACAATATCATGATGATcc > 1:2202422/1‑36 (MQ=255)
gTTCT.ACTGCCATAAACACAATATCATGATGATCCt > 1:2014331/1‑36 (MQ=255)
gTTCT.ACTGCCATAAACACAATATCATGATGATCCt > 1:5416420/1‑36 (MQ=255)
gTTCT.ACTGCCATAAACACAATATCATGATGATCCt > 1:1220714/1‑36 (MQ=255)
gTTCT.ACTGCCATAAACACAATATCATGATGATCCt > 1:1068112/1‑36 (MQ=255)
gTTCA.ACTGCCATAAACACAATATCATGATGATCCt < 1:1197236/36‑1 (MQ=255)
ttCT.ACTGCCATAAACACAATATCATGATGATCCTc > 1:1474309/1‑36 (MQ=255)
ttCT.ACTGCCATAAACACAATATCATGATGATCCTc > 1:852313/1‑36 (MQ=255)
tCT.ACTGCCATAAACACAATATCATGATGATCCTCa > 1:7139187/1‑36 (MQ=255)
tCT.ACTGCCATAAACACAATATCATGATGATCCTCa > 1:2976721/1‑36 (MQ=255)
cT.ACTGCCATAAACACAATATCATGATGATCCTCaa > 1:7315283/1‑36 (MQ=255)
cT.ACTGCCATAAACACAATATCATGATGATCCTCaa > 1:6758426/1‑36 (MQ=255)
t.ACTGCCATAAACACAATATCATGATGATCCTCAAt > 1:1805330/1‑36 (MQ=255)
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TTCTGGAGAAACTGAAAATATCGCTAAAAACGTTCT.ACTGCCATAAACACAATATCATGATGATCCTCAAT > REL606/3584580‑3584650
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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