Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,780,211 | A→T | 7.7% | intergenic (‑374/‑148) | thrS ← / → arpB | threonyl‑tRNA synthetase/hypothetical protein; ankyrin‑repeat protein B; b1720(b4494) |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,780,211 | 0 | A→T | 7.7% | 2.3 ‑1.4 ‑0.0 | 39 | intergenic (‑374/‑148) | thrS/arpB | threonyl‑tRNA synthetase/hypothetical protein; ankyrin‑repeat protein B; b1720(b4494) |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (19/17): total (22/17) | ||||||||||
Fisher's exact test strand distribution p-value = 2.43e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.99e-01 |
GCAAAGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAACGCTCATGAGATTAATGACGAAGTGGTCATATC > REL606/1780176‑1780246
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gCAAAGTTCGTTGCGTGATTTGGCGGTAGTATTTTa < 1:1476666/36‑1 (MQ=255)
gCAAAGTTCGTTGCGTGATTTGGCGGTAGTATTTTa < 1:373923/36‑1 (MQ=255)
cAAAGTTCGTTGCGTGATTTGGCGGTAGTATTTTaa < 1:3240833/36‑1 (MQ=255)
aaGTTCGTTGCGTGATTTGGCGGTAGTATTTTtaaa > 1:1180730/1‑35 (MQ=255)
aaGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAAc < 1:5542225/36‑1 (MQ=255)
aaGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAAc < 1:1599166/36‑1 (MQ=255)
aaGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAAc < 1:7507496/36‑1 (MQ=255)
aGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAACg < 1:6011862/36‑1 (MQ=255)
ttCGTTGCGTGATTTGGCGGTAGTATTTTTAACGCt > 1:6000121/1‑36 (MQ=255)
ttCGTTGCGTGATTTGGCGGTAGTATTTTAAACGCt < 1:1496799/36‑1 (MQ=255)
ttCGTTGCGTGATTTGGCGGTAGTATTTTAAACGCt < 1:6728430/36‑1 (MQ=255)
ttCGTTGCGTGATTTGGCGGTAGGATTTTTAAAGCt > 1:4696180/1‑36 (MQ=25)
tCGTTGCGTGATTTGGCGGTAGTATTTTAAACGCTc < 1:7503574/36‑1 (MQ=255)
cGTTGCGTGATTTGGCGGTAGTATTTTAAACGCTCa < 1:5060875/36‑1 (MQ=255)
tGCGTGATTTGGCGGTAGTATTTTAAACGCTCATga < 1:6688257/36‑1 (MQ=255)
gCGTGATTTGGCGGTAGTATTTTAAACGCTCAttat > 1:436072/1‑33 (MQ=255)
gCGTGATTTGGCGGTAGTATTTTAAACGCTCATgag < 1:2322458/36‑1 (MQ=255)
cGTGATTTGGCGGTAGTATTTTAAAACCTCATgaga > 1:7787928/1‑36 (MQ=38)
tGATTTGGCGGTAGTATTTTAAACGCTCATGAGAtt < 1:4760621/36‑1 (MQ=255)
gATTTGGCGGTAGTATTTTAAACGCTCATGAGATTa < 1:8208047/36‑1 (MQ=255)
aTTTGGCGGTAGTATTTTAAACGCTCATTAGAttta > 1:7465093/1‑34 (MQ=38)
aTTTGGCGGTAGTATTTTAAACGCTCATGAGATTaa > 1:8335440/1‑36 (MQ=255)
aTTTGGCGGTAGTATTTTAAACGCTCATGAGATTaa < 1:8110375/36‑1 (MQ=255)
tttGGCGGTAGTATTTTTTAAACTCATTAGAttttt > 1:6683860/1‑33 (MQ=9)
ggCGGTAGTATTTTAAACGCTCATTAGATTAATTAc > 1:8006006/1‑36 (MQ=38)
ggCGGTAGTATTTTAAACGCTCATGAGATTAATGAc < 1:6840934/36‑1 (MQ=255)
cGGTAGTATTTTAAACGCTCATGAGATTAATGACGa < 1:7119908/36‑1 (MQ=255)
cGGTAGTATTTTAAACGCTCATGAGATTAATGACGa > 1:7873818/1‑36 (MQ=255)
ggTAGTATTTTAAACGCTCATGAGATTAATGACGaa > 1:113982/1‑36 (MQ=255)
ggTAGTATTTTAAACGCTCATGAGATTAATGACGaa > 1:2794627/1‑36 (MQ=255)
tagtaTTTTAAACGCTCATGAGATTAATGACGAAGt > 1:865386/1‑36 (MQ=255)
gtaTTTTAAACGCTCATGAGATTAATGACGAAGTgg > 1:3051712/1‑36 (MQ=255)
taTTTTAAACGCTCATGAGATTAATTACGAAGTGGt > 1:5732155/1‑36 (MQ=255)
taTTTTAAACGCTCATGAGATTAATGACGAAGTGGt > 1:4521538/1‑36 (MQ=255)
taTTTTAAACGCTCATGAGATTAATGACGAAGTGGt > 1:142124/1‑36 (MQ=255)
taTTTTAAACGCTCATGAGATTAATGACGAAGTGGt > 1:600342/1‑36 (MQ=255)
ttttAAACGCTCATGAGATTAATGACGAAGTGGTCa > 1:292023/1‑36 (MQ=255)
tttAAACGCTCATGAGATTAATGACGAAGTGGTCat < 1:6894942/36‑1 (MQ=255)
tttAAACGCTCATGAGATTAATGACGAAGTGGTCat < 1:409542/36‑1 (MQ=255)
tttAAACGCTCATGAGATTAATGACGAAGTGGTCat > 1:3995524/1‑36 (MQ=255)
tttAAACGCTCATGAGATTAATGACGAAGTGGTCat > 1:205433/1‑36 (MQ=255)
ttAAACGCTCATGAGATTAATGACGAAGTGGTCata > 1:4267963/1‑36 (MQ=255)
tAAACGCTCATGAGATTAATGACGAAGTGGTCatat > 1:6772189/1‑36 (MQ=255)
aaaCGCTCATGAGATTAATGACGAAGTGGTCATATc < 1:2916020/36‑1 (MQ=255)
aaaCGCTCATGAGATTAATGACGAAGTGGTCATATc < 1:2894573/36‑1 (MQ=255)
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GCAAAGTTCGTTGCGTGATTTGGCGGTAGTATTTTAAACGCTCATGAGATTAATGACGAAGTGGTCATATC > REL606/1780176‑1780246
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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