Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,047,519 | +G | 7.7% | coding (241/330 nt) | yccK ← | predicted sulfite reductase subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,047,519 | 1 | .→G | 7.7% | 3.2 ‑3.5 ‑0.0 | 26 | coding (241/330 nt) | yccK | predicted sulfite reductase subunit |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (3/21): total (5/21) | ||||||||||
Fisher's exact test strand distribution p-value = 3.08e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.94e-01 |
CGGACCTTTCGGAAACAGTCGGTATAAATAGCGGCT.GTTACCTTTTTCTTCGCCAAATTTATTCGCCATCG > REL606/1047484‑1047554
|
cGGACCTTTCGGAAACAGTCGGTATAAATAGCGGCt > 1:1016782/1‑36 (MQ=255)
ggACCCTTCGGAACCAGTCGGTATAAATAGCTGCtc < 1:1737639/36‑2 (MQ=18)
gACCTTTCGGAAACAGTCGGTATAAATAGCGGGT.gg > 1:6080513/1‑35 (MQ=255)
gACCTTTCGGAAACAGTCGGTATAAATAGCGGCT.Gt < 1:1355338/36‑1 (MQ=255)
tttCGGAAACAGTCGGTATAAATAGCGGCT.GTTAcc < 1:4023971/36‑1 (MQ=255)
cGGCAACAGTCGGTATAAATAGCGGCT.GTTACCttt < 1:5328943/36‑1 (MQ=255)
gAAACAGTCGGTATAAATAGCGGCT.GTTACCttttt < 1:2946434/36‑1 (MQ=255)
gAAACAGTCGGTATAAATAGCGGCT.GTTACCttttt < 1:5482438/36‑1 (MQ=255)
aaccAGTCGGTATAAATAGCGGCT.GTTACCTTTttc < 1:3006932/33‑1 (MQ=255)
aaaCAGTCGGTATAAATAGCGGCT.GTTACCTTTttc < 1:7815002/36‑1 (MQ=255)
aaaCAGCCGTTATACATCTCGGCT.GTTACCTTTttc < 1:4603794/36‑1 (MQ=12)
aaCAGTCGGTATAAATAGCGGCT.GTTACCTTTttct < 1:7638859/36‑1 (MQ=255)
aCAGTCGGTATAAATAGCGGCTGGTTACTttttttt > 1:1314000/1‑34 (MQ=25)
cAGTCGGTATAAATAGCGGCT.GTTACCTTTttcttc < 1:3273297/36‑1 (MQ=255)
cAGTCGGTATAAATAGCGGCT.GTTACCTTTttcttc < 1:3813398/36‑1 (MQ=255)
cAGTCGGTATAAATAGCGGCT.GTTACCTTTttcttc < 1:1376960/36‑1 (MQ=255)
aGTCGGTATAAATAGCGGCT.GTTACCTTTTTCTTCg < 1:5708409/36‑1 (MQ=255)
tataAATAGCGGCT.GTTACCTTTTTCTTCGCCAAAt < 1:886047/36‑1 (MQ=255)
tataAATAGCGGCT.GTTACCTTTTTCTTCGCCAAAt < 1:5565231/36‑1 (MQ=255)
tataAATAGCGGCT.GTTACCTTTTTCTTCGCCAAAt < 1:5402930/36‑1 (MQ=255)
ataAATAGCGGCTGGTTACTTTTTTTTTTTCCaatt > 1:7184717/1‑34 (MQ=2)
ataAATAGCGGCT.GTTACCTTTTTCTTCGCCAAAtt < 1:6382403/36‑1 (MQ=255)
ataAATAGCGGCT.GGTTCCTTTTTTTTTTCCAAAtt > 1:3573312/1‑36 (MQ=16)
aaaTAGCGGCT.GTTACCTTTTTCTTCGCCAAATTTa < 1:7532742/36‑1 (MQ=255)
aTAGCGGCT.GGTACCTTTTTTTTTTCCAAATTTTtt > 1:1131262/1‑36 (MQ=16)
tAGCGGCT.GTTACCTTTTTCTTCGCCAAATTTATTc < 1:6719130/36‑1 (MQ=255)
gCGGCT.GTTACCTTTTTCTTCGCCAAATTTATTCGc < 1:2079218/36‑1 (MQ=255)
cGGCT.GTTACCTTTTTCTTCGCCAAATTTATTCGcc > 1:7842956/1‑36 (MQ=255)
cT.GTTACCTTTTTCTTCGCCAAATTTATTCGCCATc < 1:3437423/36‑1 (MQ=255)
t.GTTACCTTTTTCTTCGCCAAATTTATTCGCCATCg < 1:7152441/36‑1 (MQ=255)
|
CGGACCTTTCGGAAACAGTCGGTATAAATAGCGGCT.GTTACCTTTTTCTTCGCCAAATTTATTCGCCATCG > REL606/1047484‑1047554
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|