New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1290519 =16 (0.450)5 (0.140) 3/56 NT 29.4% coding (484/1014 nt) hnr response regulator of RpoS
?REL606 = 1977651 8 (0.180)coding (175/1005 nt) yedY hypothetical protein

ATTAACCCGGCAATGGGAAATCACCTGCTGAACCGGCGG..........  <  REL606/1290557‑1290519
................................CCGGCGGGGGCGGGTGG  <  REL606/1977651‑1977642
                                                 
          CAATGGGAAATCACCTGCTGAACCGGCGGGGGGGGG     >  1:5566752/1‑36 (MQ=255)
           AATGGGAAATCACCTGCTGAACCGGCGGGGGGGGGg    >  1:639033/1‑35 (MQ=255)
           AATGGGAAATCACCTGCTGAACCGGCGGGGGGGGGT    >  1:616866/1‑36 (MQ=255)
           AATGGGAAATCACCTGCTGAACCGGCGGGGGCGGGT    >  1:5918961/1‑36 (MQ=255)
             TGGGAAATCACCTGCTGAACCGGCGGGGGGGGGTGG  >  1:1666277/1‑36 (MQ=255)
                                                 
ATTAACCCGGCAATGGGAAATCACCTGCTGAACCGGCGG..........  <  REL606/1290557‑1290519
................................CCGGCGGGGGCGGGTGG  <  REL606/1977651‑1977642

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 12 ≤  ATCG  < 35 ≤  ATCG  < 37 ≤  ATCG