Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,566,735 | C→A | 12.9% | L123F (TTG→TTT) | yneL ← | predicted transcriptional regulator |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,566,735 | 0 | C→A | 12.9% | 2.4 ‑3.0 ‑0.1 | 38 | 369 | yneL | predicted transcriptional regulator |
Reads supporting (aligned to +/- strand): new base (0/5): ref base (18/15): total (18/20) | ||||||||||
Fisher's exact test strand distribution p-value = 4.80e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.80e-01 |
GCCCCATCAAGTATTAATACCTCACCCGTACGGTCCAAAATTTGAATACCGACATTTTGGGCAGAGCCTGC > REL606/1566700‑1566770
|
gCCCCATCAAGTATTAATACCTCACCCGTACGGTcc > 1:2248333/1‑36 (MQ=255)
gCCCCATCAAGTATTAATACCTCACCCGTACGGTcc > 1:625479/1‑36 (MQ=255)
ccccATCAAGTATTAATACCTCACCCGTACGGTCCa < 1:488495/36‑1 (MQ=255)
cccATCAAGTATTAATACCTCACCCGTACGGTCCaa < 1:4371116/36‑1 (MQ=255)
cccATCAAGTATTAATACCTCACCCGTACGGTCCaa < 1:4445782/36‑1 (MQ=255)
cATCAAGTATTAATACCTCACCCGTACGGTCCaaaa < 1:6664541/36‑1 (MQ=255)
cAAGTATTAATACCTCACCCGTACGGTCCAAAAttt < 1:1053015/36‑1 (MQ=255)
aaGTATTAATACCTCACCCGTACGGTCCAAAATTTg > 1:6944170/1‑36 (MQ=255)
aaGTATTAATACCTCACCCGTACGGGCCAAAATTTg > 1:2390079/1‑36 (MQ=255)
gTATTAATACCTCACCCGCACGCTCCAAAATTTGaa > 1:6737962/1‑36 (MQ=37)
aTTAATACCTCACCCGTACGGTCCAAAATTTGAATa < 1:5933772/36‑1 (MQ=255)
ttAATACCTCACCCGTACGGTCCAAAATTTGAATAc < 1:2323769/36‑1 (MQ=255)
ttAATACCTCACCCGTACGGTCCAAAATTTGAATAc > 1:5610562/1‑36 (MQ=255)
tAATACCTCACCCGTACGGTCCAAAATTTGAATAcc > 1:3151202/1‑36 (MQ=255)
tAATACCTCACCCGTACGGTCCAAAATTTGAATAcc < 1:7123749/36‑1 (MQ=255)
aaTACCTCACCCGTACGGTCCAAAATTTGAATACCg < 1:4716247/36‑1 (MQ=255)
aaTACCTCACCCGTACGGTCCAAAATTTGAATACCg < 1:957180/36‑1 (MQ=255)
ccTCACCCGTACGGTCCAAAATTTGAATACCGACAt > 1:421930/1‑36 (MQ=255)
ccTCACCCGTACGGTCCAAAATTTGAATACCGACAt > 1:4377997/1‑36 (MQ=255)
ccTCACCCGTACGGTCCAAAATTTGAATACCGACAt < 1:906318/36‑1 (MQ=255)
ctaaCCCGTACGGTAAAAAATTTGAATACCGACAtt < 1:4830800/33‑1 (MQ=25)
tCACCCGTACGGTCCAAAATTTGAATACCGACAttt < 1:373321/36‑1 (MQ=255)
tCACCCGTACGGTCCAAAATTTGAATACCGACAttt > 1:7762837/1‑36 (MQ=255)
tCACCCGTACGGTCCAAAATTTGAATACCGACAttt < 1:2860708/36‑1 (MQ=255)
tCACCCGTACGGTCAAAAATTTGAATACCGACAttt < 1:5401980/36‑1 (MQ=255)
cACCCGTACGGTCCAAAATTTGAATACCGACAtttt > 1:2044558/1‑36 (MQ=255)
cACCCGTACGGTCCAAAATTTGAATACCGACAtttt < 1:5184013/36‑1 (MQ=255)
aCCCGTACGGTCCAAAATTTGAATACCGACATTTTg > 1:244522/1‑36 (MQ=255)
cccGTACGGTCCAAAATTTGAATACCGACATTTTgg < 1:7760011/36‑1 (MQ=255)
cccGTACGGTCCAAAATTTGAATACCGACATTTTgg > 1:3543513/1‑36 (MQ=255)
cccGTACGGTCAAAAATTTGAATACCGACATTTTgg < 1:6515003/36‑1 (MQ=255)
ccGTACGGTCCAAAATTTGAATACCGACATTTTggg > 1:3486287/1‑36 (MQ=255)
ccGTACGGTAAAAAATTTGAATACCGACATTTTggg < 1:2980827/36‑1 (MQ=37)
cGTACGGTCCAAAATTTGAATACCGACATTTTGGGc > 1:1019497/1‑36 (MQ=255)
cGTACGGTCCAAAATTTGAATACCGACATTTTGGGc > 1:2038213/1‑36 (MQ=255)
gTACGGTCCAAAATTTGAATACCGACATTTTGGGCa > 1:5516671/1‑36 (MQ=255)
aCGGTAAAAAATTTGAATACCGACATTTTGGGCaga < 1:2510074/36‑1 (MQ=37)
ggTCCAAAATTTGAATACCGACATTTTGGGCAGAGc > 1:2255321/1‑36 (MQ=255)
tCCAAAATTTGAATACCGACATTTTGGGCAGAGCCt > 1:2342145/1‑36 (MQ=255)
tCCAAAATTTGAATACCGACATTTTGGGCAGAGCCt > 1:563141/1‑36 (MQ=255)
cAAAATTTGAATACCGACATTTTGGGCAGAGCCCGc > 1:7766415/1‑36 (MQ=255)
|
GCCCCATCAAGTATTAATACCTCACCCGTACGGTCCAAAATTTGAATACCGACATTTTGGGCAGAGCCTGC > REL606/1566700‑1566770
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|