Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 27 [3] | [0] 25 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 24 (0.580) | 18/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894963‑3894996
................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:5879808/36‑1 (MQ=1)
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:4794483/36‑1 (MQ=1)
GTGTTTAACTGTCCAAATTTTTGGGGTCAGTACAGG > 1:799298/1‑36 (MQ=0)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:1301283/1‑36 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:4719054/36‑1 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:5749452/36‑1 (MQ=38)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 1:2740182/36‑1 (MQ=38)
ACTATCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 1:1225791/36‑1 (MQ=255)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCACGT > 1:1018221/1‑36 (MQ=255)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:3653140/36‑1 (MQ=38)
CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC < 1:291042/36‑1 (MQ=38)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 1:4248546/1‑36 (MQ=38)
ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 1:3644452/36‑1 (MQ=38)
cTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:1341685/35‑1 (MQ=255)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:217109/36‑1 (MQ=255)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:5647713/36‑1 (MQ=255)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:5813060/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:3281647/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:132874/36‑1 (MQ=255)
TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 1:4898020/36‑1 (MQ=255)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA < 1:3281474/36‑1 (MQ=255)
AGTACAGGTTGCCCAGGCGACCAGCACGCCGCCAAG > 1:4823841/1‑36 (MQ=255)
GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA < 1:5573964/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGCAC < 1:3020632/36‑1 (MQ=255)
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894963‑3894996
................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|