Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,341,814 | 0 | C→T | 7.5% | 0.6 ‑3.7 ‑0.0 | 60 | 216 | yjdC | predicted transcriptional regulator |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (4/1): ref base (14/41): total (18/42) | ||||||||||
Fisher's exact test strand distribution p-value = 2.51e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.88e-01 |
TGATAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGCTGACGACGCCAGACAT > REL606/4341779‑4341848
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tGATAACGTGCCCGGCGGTTTTGTTCGGCGGTTTGc < 1:4634125/36‑1 (MQ=19)
aTAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGt > 1:682120/1‑36 (MQ=255)
taccGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGtt < 1:4667256/33‑1 (MQ=255)
tAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGtt < 1:2633079/36‑1 (MQ=255)
tAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGtt < 1:549455/36‑1 (MQ=255)
tAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGtt < 1:5913712/36‑1 (MQ=255)
tAACGTGCCAGCAGCTTTTGTTCGGCGGCTTGCGtt > 1:151375/1‑36 (MQ=255)
tAACATGCCAGCAGCTTTTGTTCGGCGGTTTGCGtt < 1:4442835/36‑1 (MQ=255)
aaCGTGCCCGTAGCTTTTGTTCGGCGGTTTGCGttt < 1:4895806/36‑1 (MQ=37)
aaCGTGCCCGCAGCTTTTGTTCGGCGGTTTGCGttt < 1:4302609/36‑1 (MQ=255)
aaCGTGCCAGCAGCTTTTGTTCGGCGGTTTTCGttt > 1:4658710/1‑36 (MQ=255)
aCGTGCCAGCATCTTTTGTTCGGCGGTTTGCGTTTc < 1:4606125/36‑1 (MQ=255)
aCGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTc < 1:5148732/36‑1 (MQ=255)
aCGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTc < 1:4561536/36‑1 (MQ=255)
aCGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTc < 1:4052953/36‑1 (MQ=255)
cGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCg < 1:2478966/36‑1 (MQ=255)
gTGCCAGCAGCTTTTGTTCGGCGGTTTTTGttttta > 1:4818712/1‑33 (MQ=25)
gTGCCAGCAGCTTTTGTTCGGCGGTTTGTGTTTCGt < 1:1392938/36‑1 (MQ=255)
gTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGt < 1:4308284/36‑1 (MQ=255)
gTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGt < 1:3679075/36‑1 (MQ=255)
tGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTc < 1:2623906/36‑1 (MQ=255)
tGCCAGCAGCTTTTGTTCGGCGGGTTTTGTTTTGtt > 1:3134941/1‑35 (MQ=16)
gCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTcc < 1:2143777/36‑1 (MQ=255)
gCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTcc < 1:53814/36‑1 (MQ=255)
gCCAGCAGCTTTTGTTCGGCGGGTTGTGTTTCTTcc > 1:1041406/1‑36 (MQ=18)
ccAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTCCa < 1:2865715/36‑1 (MQ=255)
gcagcTTTTGTTCGGCGGTTTGCGTTTCGTCCAGCa < 1:4387380/36‑1 (MQ=255)
gcagcTTTTGTTCGGCGGTTTGCGTTTCGTCCAACa < 1:1656155/36‑1 (MQ=255)
cgcTTTTGTTCGGCGTTTTGCGTTTCGTCCAGCATc < 1:3799972/35‑1 (MQ=255)
agcTTTTGTTCGGCGGTTTGCGTTTCGTCCAGCATc < 1:4160204/36‑1 (MQ=255)
gcTTTTGTTCTGCGGTTTGCGTTTCGTCCAGCATCa < 1:3660208/36‑1 (MQ=255)
gcTTTTGTTCGGCGGTTTTCGTTTTGTCCCGCATCa > 1:5868251/1‑36 (MQ=25)
ttttGTTCGGCGGTTTTTGTTTTTTCCAGCATCatc > 1:3206483/1‑34 (MQ=16)
ttttGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGc < 1:1552348/36‑1 (MQ=255)
ttttGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGc < 1:4351586/36‑1 (MQ=255)
tttGTTCGGCGGTTTTCGTTTTGTTCAGCACCAGCt > 1:5304495/1‑36 (MQ=16)
tttGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGCt < 1:1811878/36‑1 (MQ=255)
tttGTTCGGCGGGTTTCGTTTTTTCCCGCATCAGCt > 1:881583/1‑36 (MQ=16)
tttGTCCGGCGGTTTGCGTTTCGTCCAGCATCAGcc < 1:3660933/36‑2 (MQ=255)
tGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGCTga < 1:5404175/36‑1 (MQ=255)
gTTCGGCGGTTTTCGTTTCGTCCAGCATCCGCTgtc > 1:4350505/1‑34 (MQ=25)
gTTCGGCGGTTTGCGTTTCGTCCAGCATCAGCTgac < 1:107020/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCATCATCAGCTgccgac < 1:3785952/36‑1 (MQ=37)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:54306/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:1010708/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:2370646/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:3347159/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:4065148/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:4405815/36‑1 (MQ=255)
cggcggTTTGCGTTTCGTCCAGCATCAGCTgacgac < 1:467471/36‑1 (MQ=255)
ggcggTTTTCGTTTCGTGCCCCATTCGCTGacgacg > 1:5914584/1‑36 (MQ=9)
gcggTTTGCGTTTCGTCCAGCATCAGCTGACGACGc < 1:1341333/36‑1 (MQ=255)
cggTTTGCGTTTCGTCCAGCATCAGCTGACGACGcc < 1:514416/36‑1 (MQ=255)
ggTTTGCGTTTCGTCCAGCATCAGCTGACGACGCCa > 1:1620007/1‑36 (MQ=255)
gTTTGCGTTTCGTCCAGCATCAGCTGACGACGCCAg > 1:3694666/1‑36 (MQ=255)
tttGCGTTTCGTCCAGCATCAGCTGACGACGCCAGa < 1:4957975/36‑1 (MQ=255)
tttGCGTTTCGTCCAGCATCAGCTGACGACGCCAGa > 1:2877744/1‑36 (MQ=255)
tttGCGTTTCGTCCAGCATCAGCTGACGACGCCAGa > 1:1584561/1‑36 (MQ=255)
tttGCGTTTCGTCCAGAATCAGCTGACGACGCCAGa > 1:5831168/1‑36 (MQ=255)
ttGCGTTTCGTCCAGCATCAGCTGACGACGCCAGAc > 1:3001845/1‑36 (MQ=255)
gCGTTTCGTCCAGCATCAGCTGACGACGCCAGACat < 1:1884181/36‑1 (MQ=255)
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TGATAACGTGCCAGCAGCTTTTGTTCGGCGGTTTGCGTTTCGTCCAGCATCAGCTGACGACGCCAGACAT > REL606/4341779‑4341848
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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