Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 86.1% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =5 (0.110)28 (0.610) 20/52 NT 84.9% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169745 (0.090)34 (0.640) 25/60 NT 87.2% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 113 total aligned reads displayed.

ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATC  >  REL606/16939‑17009
                                   |                                   
catttcatcgtccaacaaaatgggtgcagtacaGGt                                     <  1:6095765‑M1/3‑1 (MQ=255)
catttcatcgtccaacaaaatgggtgcagtacaGGt                                     >  1:6906106‑M1/34‑36 (MQ=255)
catttcatcgtccaacaaaatgggtgcagtacaGGt                                     >  1:8334341‑M1/34‑36 (MQ=255)
catttcatcgtccaacaaaatgggtgcagtacaGGt                                     >  1:2004617‑M1/34‑36 (MQ=255)
aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                     <  1:6821911‑M1/36‑1 (MQ=255)
 ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                    <  1:7236525‑M1/36‑2 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                    <  1:3738810‑M1/4‑1 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                    >  1:8250249‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaGGtt                                    >  1:6896012‑M1/33‑36 (MQ=255)
  tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtg                                   >  1:2654816‑M1/1‑34 (MQ=255)
  tctACATGTGTTCAGCATATAGGGAGCCTCGGGTtg                                   <  1:6352216‑M1/36‑3 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTtgt                                  <  1:473341‑M1/6‑2 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  <  1:4521752‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  <  1:7393889‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  >  1:7955434‑M1/31‑36 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  <  1:8030530‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  <  1:1971102‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  >  1:1028636‑M1/31‑36 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                  >  1:1458779‑M1/31‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                 >  1:5011364‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                 >  1:5360282‑M1/30‑36 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                                 <  1:4558667‑M1/7‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                                <  1:1980262‑M1/8‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                                >  1:7862010‑M1/29‑36 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaGGTTGATa                                >  1:4186223‑M1/29‑36 (MQ=255)
     aCATGTGTTCAGCATTTAGGGGGCCTCGGGTtgtat                                >  1:6038669‑M1/1‑31 (MQ=255)
     aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                                >  1:2438965‑M1/1‑31 (MQ=255)
     aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                                >  1:5103223‑M1/1‑31 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                               >  1:722575‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                               >  1:5832968‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                               >  1:4367855‑M1/28‑36 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaGGTTGATAg                               <  1:6128601‑M1/9‑1 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactt                              >  1:7166903‑M1/1‑29 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                              <  1:3344851‑M1/36‑8 (MQ=255)
       aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                              >  1:5017926‑M1/1‑29 (MQ=255)
         gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                            <  1:3561155‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                            <  1:1341657‑M1/12‑1 (MQ=255)
          tgtTCAGCATATAGGGGGCCTCGGGTtgtactgacc                           <  1:7012629‑M1/36‑11 (MQ=255)
          tgtTCAGCATATAGGGGGCCTCGGGTTGATAGTaaa                           <  1:4170698/36‑1 (MQ=255)
           gtTCAGCATATAGGGGGCCTCGGGTtgtactgaccc                          >  1:3311227‑M1/1‑25 (MQ=255)
            ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                         <  1:5817689‑M1/36‑13 (MQ=255)
              cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                       <  1:6370962‑M1/36‑15 (MQ=255)
              acaaaatgggtgcagtacaGGTTGATAGTAAAatat                       <  1:1928510‑M1/17‑1 (MQ=255)
               caaaatgtgtgcagtacaGGTTGATAGTAAAATATc                      >  1:1189810‑M1/19‑36 (MQ=255)
               caaaatgggtgcagtacaGTTTGATAGTAAAATATc                      >  1:180869‑M1/19‑36 (MQ=255)
               caaaatgggtgcagtacaGGTTGATAGTAAAATATc                      <  1:2489396‑M1/18‑1 (MQ=255)
               caaaatgggtgcagtacaGGTTGATAGTAAAATATc                      <  1:3522247‑M1/18‑1 (MQ=255)
               aGCATATAGGGGGCCTCGGGTtgtactgaccccaaa                      >  1:2436732‑M1/1‑21 (MQ=255)
                gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                     >  1:1869302‑M1/1‑20 (MQ=255)
                gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCa                     <  1:2040389/36‑1 (MQ=255)
                gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCa                     <  1:4006084/36‑1 (MQ=255)
                 cATATAGGGGGCCTCGGGTtgtactgaccccaaaaa                    <  1:7217534‑M1/36‑18 (MQ=255)
                  atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                   <  1:6363243‑M1/36‑19 (MQ=255)
                  atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                   <  1:8127818‑M1/36‑19 (MQ=255)
                  atatAGGGGGCCTCGGGTTGATAGTAAAATATCACt                   <  1:2357285/36‑1 (MQ=255)
                   atgggtgcagtacaGGTTGATAGTAAAATATCACTc                  >  1:1508927‑M1/15‑36 (MQ=255)
                    tgggtgcagtacaGGTTGATAGTAAAATATCACTCg                 <  1:7209542‑M1/23‑1 (MQ=255)
                    ataGGGGGCCTCGGGTtgtactgaccccaaaaagtt                 >  1:917110‑M1/1‑16 (MQ=255)
                    ataGGGGGCCTCGGGTtgtactgaccccaaaaagtt                 <  1:7594217‑M1/36‑21 (MQ=255)
                     taGGGGGCCTCGGGTtgtactgaccccaaaaagttg                <  1:8046781‑M1/36‑22 (MQ=255)
                     gggtgcagtacaGGTTGATAGTAAAATATCACTCgg                <  1:5034331‑M1/24‑1 (MQ=255)
                      ggtgcagtacaGGTTGATAGTAAAATATCACTCggg               >  1:889170‑M1/12‑36 (MQ=255)
                      ggtgcagtacaGGTTGATAGTAAAATATCACTCggg               >  1:6790997‑M1/12‑36 (MQ=255)
                      aGGGGGCCTCGGGTtgtactgaccccaaaaagttgg               <  1:3944373‑M1/36‑23 (MQ=255)
                      aGGGGGCCTCGGGTtgtactgaccccaaaaagttgg               >  1:174459‑M1/1‑14 (MQ=255)
                       gtggagtacaGGTTGATAGTAAAATATCACTCgggg              >  1:5486160‑M1/11‑36 (MQ=255)
                       gtgcagtacaGGTTGATAGTAAAATATCACTCgggg              <  1:856367‑M1/26‑1 (MQ=255)
                       gggggCCTCGGGTtgtactgaccccaaaaagttgga              <  1:7543980‑M1/36‑24 (MQ=255)
                        tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc             >  1:6331631‑M1/10‑36 (MQ=255)
                        tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc             <  1:3136500‑M1/27‑1 (MQ=255)
                        ggggCCTCGGGTtgtactgaccccaaaaagttggac             >  1:1450183‑M1/1‑12 (MQ=255)
                        ggggCCTCGGGTtgtactgaccccaaaaagttggac             >  1:2814332‑M1/1‑12 (MQ=255)
                         tggcCTCGGTTtgtactgaccccaaaaagttggaca            >  1:2065761‑M1/2‑11 (MQ=255)
                         gcagtacaGGTTGATAGTAAAATATCACTCGGGGCt            <  1:8098224‑M1/28‑1 (MQ=255)
                           gCCTCGGGTtgtactgaccccaaaaagctggacagt          >  1:6850397‑M1/1‑9 (MQ=255)
                           agtacaGGTTGATAGTAAAATATCACTCGGGGCttt          >  1:8154607‑M1/7‑36 (MQ=255)
                            ccTCGGGTtgtactgaccccataaagttggacagtt         <  1:1664532‑M1/36‑29 (MQ=255)
                            ccTCGGGTtgtactgaccccaaaaagttggacagtt         >  1:4178000‑M1/1‑8 (MQ=255)
                            ccTCGGGTTGATAGTAAAATATCACTCGGGGCtttt         >  1:6686537/1‑36 (MQ=255)
                             tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc        <  1:3844061‑M1/32‑1 (MQ=255)
                             tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc        >  1:7588337‑M1/5‑36 (MQ=255)
                             cTCGGGTtgtactgaccccaaaaagttggacagtta        >  1:2080494‑M1/1‑7 (MQ=255)
                             cTCGGGTtgtactgaccccaaaaagttggacagtta        >  1:4628017‑M1/1‑7 (MQ=255)
                              tCGGGTtgtactgaccccaaaaagttggacagttaa       <  1:6946702‑M1/36‑31 (MQ=255)
                              acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct       >  1:6126712‑M1/4‑36 (MQ=255)
                              acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct       >  1:2354210‑M1/4‑36 (MQ=255)
                               cgagttgtactgaccccaaaaagttggacagttaaa      <  1:4018586‑M1/33‑32 (MQ=255)
                               cgagttgtactgaccccaaaaagttggacagttaaa      <  1:7040635‑M1/33‑32 (MQ=255)
                               caGGTTGATAGTAAAATATCACTCGGGGCTTTtctc      <  1:4451953‑M1/34‑1 (MQ=255)
                               cGGGTtgtactgaccccaaaaagttggacagttaaa      >  1:6955017‑M1/1‑5 (MQ=255)
                               cGGGTtgtactgaccccaaaaagttggacagttaaa      >  1:5135836‑M1/1‑5 (MQ=255)
                                aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct     <  1:6641158‑M1/35‑1 (MQ=255)
                                 ggTtgtactgaccccaaaaagtttgacagttaaaca    <  1:5754725‑M1/36‑34 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca    >  1:5212321‑M1/1‑3 (MQ=255)
                                 ggTtgtactgaccccaaaaagttggacagttaaaca    >  1:5810141‑M1/1‑3 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac   <  1:4014653‑M1/36‑35 (MQ=255)
                                  gTtgtactgaccccaaaaagttggacagttaaacac   <  1:5171295‑M1/36‑35 (MQ=255)
                                   ttgtactgaccccaaaaagttggacagttaaacacg  <  1:4589878‑M1/36‑36 (MQ=255)
                                   ttgtactgaccccaaaaagttggacagttaaacacg  >  1:5480800‑M1/1‑1 (MQ=255)
                                   TTGATAGTAAAATATCACTCGGGGCTTTTCTCTATc  >  1:3167265‑M1/1‑36 (MQ=255)
                                   |                                   
ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATC  >  REL606/16939‑17009

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG