Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,102,264 | G→T | 14.4% | Q187K (CAA→AAA) | ftsN ← | essential cell division protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,102,264 | 0 | G→T | 14.4% | 3.0 ‑4.5 0.0 | 54 | 559 | ftsN | essential cell division protein |
Reads supporting (aligned to +/- strand): new base (9/1): ref base (18/26): total (27/27) | ||||||||||
Fisher's exact test strand distribution p-value = 1.13e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACTGGCGCGGTTGCGCCTGTACCGGTGCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTCA > REL606/4102231‑4102298
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aCTGGCGCGGTTGCGCCTGTACCGGTGCGGCTTTCg > 1:2438082/1‑36 (MQ=255)
cTGGCGCGGTTGCGCCTGTACCGGTGCGGCTTGCGa < 1:4609823/36‑1 (MQ=255)
cTGGCGCGGTTGCGCCTGTACCGGTGCGGCTTGCGa < 1:560310/36‑1 (MQ=255)
tGGCGCGGTTGCGCCTGTACCGGTGCGGCTTTCggc > 1:3941422/1‑34 (MQ=37)
tGGCGCGGTTGCGCCTGTACCGGTGCGGCTTTCggc > 1:3248722/1‑34 (MQ=37)
tGGCGCGGTTGCGCCTGTACCGGTGCGGCTTTCGAc > 1:1655322/1‑36 (MQ=255)
ggCGCGGTTGCGCCTGTACCGGTGCGGCTTGCGACg < 1:476003/36‑1 (MQ=255)
ggCGCGGTTGCGACTGTAACGGAGCGGCTTTCgcgg > 1:8111832/1‑33 (MQ=16)
ggCGCAGTTGCGCCTGTGCCGGTGCGGCTTGCGACg < 1:6626288/36‑1 (MQ=37)
gcgcGGTTGCGCCTGTACCGGTGCGGCTTGTGGCGt > 1:527976/1‑36 (MQ=37)
gcgcGGTTGCGCCTGTACCGGTGCGGCTTGCGACGt < 1:5089019/36‑1 (MQ=255)
gcgcGGTTGCGCCTGTACCGGTGCGGCTTGCGACGt < 1:1951923/36‑1 (MQ=255)
gcgGTTGCGCCTGTACCGGTGCGGCTTTCGACGTag > 1:6350279/1‑35 (MQ=255)
gccgTTGCGCCTGTACCGTTGCGGCTTGCGACGTAc < 1:4699909/33‑1 (MQ=37)
cgGTTGCGCCTGTACCGGTGCGGCTTGCGACGTAcg < 1:7808990/36‑1 (MQ=255)
cgGTTGCGCCTGTACCGGTGCGGCTTGCGACGTAcg > 1:4287175/1‑36 (MQ=255)
cgGTTGCGCCTGTACCGGTGCGGCTTGCGACGTAcg > 1:4129897/1‑36 (MQ=255)
ggTTGCGCCTGTACCGGTGCGGCTTGCGACGTAcgc > 1:199060/1‑36 (MQ=255)
gcgcCTGTACCGGTGCGGCTTTCGACGTACGCGTct > 1:6425863/1‑36 (MQ=255)
gcgcCTGTACCGGTGCGGCTTGCGACGTACGCGTct > 1:7271563/1‑36 (MQ=255)
gcgcCTGTACCGGCGAGGCTTTCGCCGTACGCGTct > 1:7526896/1‑36 (MQ=16)
cgcCTGTACCGGTGCGGCTTGCGACGTACGCGTctg < 1:403006/36‑1 (MQ=255)
gcCTGTACCGGTGCGGCTTGCGACGTACGCGTctgc < 1:6151810/36‑1 (MQ=255)
ccTGTACCGGTGCGGCTTGCGACGTACGCGTctgct > 1:5512364/1‑36 (MQ=255)
ccTGTACCGGTGCGGCTTGCGACGTACGCGTctgct < 1:7999128/36‑1 (MQ=255)
cTGTACCGGTGCGGCTTGCGACGTACGCGTctgctg < 1:4043965/36‑1 (MQ=255)
tGTACCGGTGCGGCTTTCGACGTACGCGTctgctgc > 1:6269904/1‑36 (MQ=255)
tGTACCGGTGCGGCTTGCGACGTACGCGTctgctgc < 1:6157405/36‑1 (MQ=255)
tGTACCGGTGCGGCTTGCCACGTACGCGTctgcttt > 1:5070748/1‑34 (MQ=38)
gTACCGGTTCGGCTTGCGCCGTACGCGTctgctgct < 1:3464738/36‑1 (MQ=37)
gTACCGGTGCGGCTTGCGACGTACGCGTctgctgct < 1:2011373/36‑1 (MQ=255)
tACCGGTGCGGCTTGCGACGTACGCGTctgctgctg < 1:2251981/36‑1 (MQ=255)
aCCGGTGCGGCTTGGGACGGAAGGGTCtactgctgc > 1:5277447/1‑36 (MQ=16)
aCCGGTGCGGCTTGCGACGTACGCGTCtgctgctgc > 1:1762519/1‑36 (MQ=255)
aCCGGTGCGGCTTGCGACGTACGCGTAtgcttctgc > 1:6740411/1‑36 (MQ=255)
ccGGTGCGGCTTGCGACGTACGCGTCTGCTGCTGcc > 1:490239/1‑36 (MQ=255)
ggTGCGGCTTGCGACGTACGCGTCTGCTGCTGCCAg < 1:4031651/36‑1 (MQ=255)
gTGCGGCTTGCGACGTACGCGTCTGCTGCTGCCAga > 1:6581060/1‑35 (MQ=255)
gTGCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGc < 1:3281022/36‑1 (MQ=255)
gTGCGGCTTGCGACGTACGCGTCTGCTGATGCCAGc > 1:2304693/1‑36 (MQ=255)
gCGGCTTTCGACGTACGCGTCTGCTGCTGCCAGCtt < 1:6737537/36‑1 (MQ=255)
gCGGCTTGCGACGTACGCGTCTGCTGCTGCCCGCtt > 1:1967892/1‑36 (MQ=255)
gCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGCtt < 1:2099285/36‑1 (MQ=255)
gCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGCtt > 1:7091611/1‑36 (MQ=255)
gCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGCtt > 1:4232701/1‑36 (MQ=255)
gCTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGt < 1:8076794/36‑1 (MQ=255)
cTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGtt < 1:6568230/36‑1 (MQ=255)
cTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGtt < 1:25996/36‑1 (MQ=255)
cTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGtt < 1:761544/36‑1 (MQ=255)
ttGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTc < 1:7104685/36‑1 (MQ=255)
ttGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTc < 1:4685941/36‑1 (MQ=255)
tGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTCa > 1:5841256/1‑36 (MQ=255)
tGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTCa < 1:1911064/36‑1 (MQ=255)
tGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTCa > 1:8286161/1‑36 (MQ=255)
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ACTGGCGCGGTTGCGCCTGTACCGGTGCGGCTTGCGACGTACGCGTCTGCTGCTGCCAGCTTTGTTCA > REL606/4102231‑4102298
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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