New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1525665 =70 (1.200)11 (0.190) 11/66 NT 14.1% coding (178/654 nt) fdnI formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible
?REL606 = 1536792 64 (1.040)coding (223/582 nt) ddpX D‑ala‑D‑ala dipeptidase, Zn‑dependent

GTACGCCGCAGATGGGACGCATTTTGCACCCGTTTTTCGGCATTGCGATTTTCGTCGCACTGATGTTTAT  >  REL606/1525630‑1525699
                                   |                                  
gggtctgggcaggcttgccccaacatcgcctgtgct                                    <  1:5726058‑M1/1‑1 (MQ=255)
 tACGCCGCAGATGGGACGCATTTTGCACCCGttttt                                   >  1:67206/1‑36 (MQ=255)
 tACGCCGCAGATGGGACGCATTTTGCACCCGttttt                                   >  1:4086392/1‑36 (MQ=255)
 ggtctgggcaggcttgccacaacatcgcctgtgctt                                   >  1:8254122‑M1/35‑36 (MQ=255)
 ggtctgggcaggcttgccacaacatcgcctgtgctt                                   >  1:4342307‑M1/35‑36 (MQ=255)
  aCGCCGCAGATGGGACGCATTTTGCACCCGTTTTTc                                  <  1:2771830/36‑1 (MQ=255)
  aCGCCGCAGATGGGACGCATTTTGCACCCGTTTTTc                                  >  1:2100458/1‑36 (MQ=255)
  aCGCCGCAGATGGGACGCAGTTTGCACCCGTTTTTc                                  >  1:6554580/1‑36 (MQ=255)
   cgccgcAGATGGGACGCATTTTGCACCCGtttttag                                 >  1:6018108/1‑34 (MQ=255)
   cgccgcAGATGGGACGCATTTTGCACCCGTTTTTCg                                 >  1:3429637/1‑36 (MQ=255)
   cgccgcAGATGGGACGCATTTTGCACCCGTTTTTCg                                 >  1:4627895/1‑36 (MQ=255)
    gccgcAGATGGGACGCATTTTGCCCCCGTTTTTCgg                                <  1:570961/36‑1 (MQ=255)
    gccgcAGATGGGACGCATTTTGCACCCGTTTTTCgg                                <  1:3434895/36‑1 (MQ=255)
     ccgcAGATGGGACGCATTTTGCACCCGTTTTTCGGc                               <  1:599106/36‑1 (MQ=255)
      cgcAGATGGGACGCATTTTGCACCCGTTTTTCGGCa                              >  1:4019892/1‑36 (MQ=255)
       gcAGATGGGACGCATTTTGCACCCGTTTTTCGGCAt                             <  1:5535827/36‑1 (MQ=255)
         aGATGGGACGCATTTTGCACCCGTTTTTCGGCATTg                           >  1:7484201/1‑36 (MQ=255)
         aGATGGGACGCATTTTGCACCCGTTTTTCGGCATTg                           >  1:7738082/1‑36 (MQ=255)
         aGATGGGACGCATTTTGCACCCGTTTTTCGGCATTg                           >  1:3282458/1‑36 (MQ=255)
         aGATGGGACGCATTTTGCACCCGTTTTTCGGCATTg                           >  1:8166105/1‑36 (MQ=255)
          gATGGGACGCATTTTGCACCCGTTTTTCGGCATTGc                          >  1:4597220/1‑36 (MQ=255)
           aTGGGACGCATTTTGCACCCGTTTTTCGGCATTGCg                         <  1:6023617/36‑1 (MQ=255)
           aTGGGACGCATTTTGCACCCGTTTTTCGGCATTGCg                         <  1:2748363/36‑1 (MQ=255)
           aTGGGACGCATTTTGCACCCGTTTTTCGGCATTGCg                         >  1:6379477/1‑36 (MQ=255)
           aTGGGACGCATTTTGCACCCGTTTTTCGGCATTGCg                         >  1:8413384/1‑36 (MQ=255)
            tGGGACGCATTTTGCACCCGTTTTTCGGCATTGCGa                        <  1:6283297/36‑1 (MQ=255)
            tGGGACGCATTTTGCACCCGTTTTTCGGCATTGCGa                        >  1:5233181/1‑36 (MQ=255)
             gggACGCATTTTGCACCCGTTTTTCGGCATTGCGAt                       <  1:3722654/36‑1 (MQ=255)
              ggACGCATTTTGCACCCGTTTTTCGGCATTGCGAtt                      <  1:6206539/36‑1 (MQ=255)
              ggACGCATTTTGCACCCGTTTTTCGGCATTGCGAtt                      <  1:2171939/36‑1 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     >  1:5478691/1‑36 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     >  1:4951672/1‑36 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     >  1:6681070/1‑36 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     <  1:1438199/36‑1 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     >  1:34357/1‑36 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGCATTGCGAttt                     <  1:4092930/36‑1 (MQ=255)
               gACGCATTTTGCACCCGTTTTTCGGAATTGCGAttt                     >  1:3150919/1‑36 (MQ=255)
                gccacaacatcgcctgtgcTTCGGCATTGCGAtttt                    <  1:7519344‑M1/17‑1 (MQ=255)
                 ccacaacatcgcctgtgcTTCGGCATTGCGATTTtc                   >  1:3482395‑M1/19‑36 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   >  1:6064348/1‑36 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   <  1:611794/36‑1 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   <  1:34183/36‑1 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   >  1:6787710/1‑36 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   <  1:691724/36‑1 (MQ=255)
                 cGCATTTTGCACCCGTTTTTCGGCATTGCGATTTtc                   <  1:5111279/36‑1 (MQ=255)
                  gCATTTTGCACCCGTTTTTCGGCATTGCGATTTtcg                  >  1:5558125/1‑36 (MQ=255)
                   cATTTTGCACCCGTTTTTCGGCATTGCGATTTtcgt                 <  1:4833643/36‑1 (MQ=255)
                   cATTTTGCACCCGTTGTTCGGCATTGCGATTTtcgt                 <  1:4332449/36‑1 (MQ=255)
                    caacatcgcctgtgcTTCGGCATTGCGATTTtcgtc                <  1:5559957‑M1/21‑1 (MQ=255)
                    aTTTTGCACCCGTTTTTCGGCATTGCGATTTtcgtc                <  1:7008833/36‑1 (MQ=255)
                    aTTTTGCACCCGTTTTTCGGCATTGCGATTTtcgtc                >  1:5645322/1‑36 (MQ=255)
                    aTTTTGCACCCGTTTTTCGGCATTGCGATTTtcgtc                >  1:5778776/1‑36 (MQ=255)
                     ttttGCACCCGTTTTTCGGCATTGCGATTTtcgtcg               >  1:7045073/1‑36 (MQ=255)
                      tttGCACCCGTTTTTCGGCATTGCGATTTTCGTCGc              >  1:7119755/1‑36 (MQ=255)
                      tttGCACCCGTTTTTCGGCATTGCGATTTTCGTCGc              <  1:4372942/36‑1 (MQ=255)
                      tttGCACCCGTTTTTCGGAATTGCGTTTTtcgtctc              >  1:2754293/1‑34 (MQ=37)
                      acatcgcctgtgcTTCGGCATTGCGATTTTCGTCGc              <  1:7340171‑M1/23‑1 (MQ=255)
                      acatcgcctgtgcTTCGGCATTGCGATTTTCGTCGc              >  1:4133823‑M1/14‑36 (MQ=255)
                       ttGCACCCGTTTTTCGGCATTGCGATTTTCGTCGCa             <  1:3019606/36‑1 (MQ=255)
                       ttGCACCCGTTTTTCGGCATTGCGATTTTCGTCGCa             <  1:8308130/36‑1 (MQ=255)
                       ttGCACCCGTTTTTCGGCATCGCGATTTTCGTCGCa             >  1:4346345/1‑36 (MQ=255)
                        tGCACCCGTTTTTCGGCATTGCGATTTTCGTCGAAc            >  1:7132106/1‑36 (MQ=255)
                         gCACCCGTTTTTCGGCATTGCGATTTTCGTCGCACt           <  1:8329866/36‑1 (MQ=255)
                           aCCCGTTTTTCGGCATTGCGATTTTCGTCGCACTGa         >  1:5363550/1‑36 (MQ=255)
                            cccGTTTTTCGGCATTGCGATTTTCGTCGCACTGat        >  1:734027/1‑36 (MQ=255)
                            cccGTTTTTCGGCATTGCGATTTTCGTCGCACTGat        <  1:7990292/36‑1 (MQ=255)
                             ctgtgcTTCGGCATTGCGATTTTCGTCGCACTGATg       >  1:5711922‑M1/7‑36 (MQ=255)
                             ccGTTTTTCGGCATTGCGATTTTCGTCGCACTGatg       >  1:1820104/1‑36 (MQ=255)
                             ccGTTTTTCGGCATTGCGATTTTCGTCGCACTGatg       <  1:5507024/36‑1 (MQ=255)
                             ccGTTTTTCGGCATTGCGATTTTCGTCGCACTGatg       >  1:4212134/1‑36 (MQ=255)
                              tgtgcTTCGGCATTGCGATTTTCGTCGCACTGATGt      >  1:2346645‑M1/6‑36 (MQ=255)
                              cggttttCGGCATTGCGATTTTCGTCGCACTGatgt      >  1:5912009/4‑36 (MQ=255)
                              cGTTTTTCGGCATTGCGATTTTCGTCGCACTGatgt      >  1:5414214/1‑36 (MQ=255)
                              cGTTTTTCGGCATTGCGATTTTCGTCGCACTGatgt      <  1:6302617/36‑1 (MQ=255)
                              cGTTTTACGGCATTGCGATTTTCGTCGCACTGatgt      <  1:8248832/36‑1 (MQ=255)
                               gtgcTTCGGCATTGCGATTTTCGTCGCACTGATGtt     >  1:165299‑M1/5‑36 (MQ=255)
                               gTTTTTCGGCATTGCGATTTTCGTCGAACTGatgtt     >  1:2940052/1‑36 (MQ=255)
                                tttttCGGCATTGCGATTTTCGTCGCACTGatgttt    <  1:7479824/36‑1 (MQ=255)
                                tttttCGGCATTGCGATTTTCGTCGCACTGatgttt    >  1:6685640/1‑36 (MQ=255)
                                tgcTTCGGCATTGCGATTTTCGTCGCACTGATGttt    >  1:2530875‑M1/4‑36 (MQ=255)
                                 ttttCGGCATTGCGATTTTCGTCGCACTGatgttta   <  1:1291421/36‑1 (MQ=255)
                                 gcTTCGGCATTGCGATTTTCGTCGCACTGATGTTTa   >  1:470719‑M1/3‑36 (MQ=255)
                                  tttCGGCATTGCGATTTTCGTCGCACTGatgtttat  >  1:1800036/1‑36 (MQ=255)
                                  tttCGGCATTGCGATTTTCGTCGCACTGatgtttat  <  1:6730329/36‑1 (MQ=255)
                                  tttCGGCATTGCGATTTTCGTCGCACTGatgtttat  >  1:1958827/1‑36 (MQ=255)
                                  tttCGGCATTGCGATTTTCGTCGCACTGatgtttat  <  1:2863909/36‑1 (MQ=255)
                                  cTTCGGCATTGCGATTTTCGTCGCACTGATGTTTAt  <  1:1620907‑M1/35‑1 (MQ=255)
                                   |                                  
GTACGCCGCAGATGGGACGCATTTTGCACCCGTTTTTCGGCATTGCGATTTTCGTCGCACTGATGTTTAT  >  REL606/1525630‑1525699

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG