Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 990,797 | C→G | 15.3% | Q57E (CAG→GAG) | smtA → | predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 990,797 | 0 | C→G | 15.3% | 3.8 ‑3.5 0.0 | 42 | 169 | smtA | predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (18/17): total (25/17) | ||||||||||
Fisher's exact test strand distribution p-value = 3.00e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTGCGTGTGCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGCATCAG > REL606/990764‑990832
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cTGCGTGTGCTGGATGCTGGCGGTGGGGAAGGGCAg > 1:7633904/1‑36 (MQ=255)
tGCGTGTGCTGGATGCTGGCGGTGGGGAAGGGGAGa > 1:6160961/1‑36 (MQ=37)
gCGTGTGCTGGATGCTGGCGGTGGGGAAGGGGAggg > 1:3980852/1‑34 (MQ=25)
gCGTGTGCTGGATGCTGGCGGTGGAGAAGGGCAGAc < 1:2875748/36‑1 (MQ=255)
cgcgtgCTGTTTGCTGGCGGTGGAGAAGGGCAGAcc < 1:2721405/33‑1 (MQ=21)
tgtgCTGGATGCTGGCGGTGGAGAAGGGCAGACCGc < 1:4986971/36‑1 (MQ=255)
tgtgCTGGATGCTGGCGGTGGAGAAGGGCAGACCGc < 1:7447256/36‑1 (MQ=255)
gtgCTGGATGCTGGCGGTGGGGAAGGGGAGACCGCa > 1:7516275/1‑36 (MQ=37)
gtgCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCa < 1:4992189/36‑1 (MQ=255)
tgCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCaa < 1:2721698/36‑1 (MQ=255)
tgCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCaa > 1:5328180/1‑36 (MQ=255)
gCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCAAt < 1:5443142/36‑1 (MQ=255)
gCTGGATGCTGGCGGGGGGGGAGGGCAGACCGGAAt > 1:5565788/1‑36 (MQ=19)
cTGGATGCTGGCGGAGGGGGAGGGGAGAGCGGaaaa > 1:4269523/1‑34 (MQ=9)
tGGATGCTGGCGGTGGAGAAGGGCAGACCGCAATCa < 1:5349543/36‑1 (MQ=255)
ggATGCTGGCGGTGGGGAAGGGGAGACCGCAATCaa > 1:5138059/1‑36 (MQ=37)
ggATGCTGGCGGTGGGGAAGGGCAGACCGCAATCaa > 1:1527827/1‑36 (MQ=255)
gATGCTGGCGGTGGGGAAGGGCAGACCGCAATCaaa > 1:2790967/1‑36 (MQ=255)
gATGCTGGCGGTGGAGAAGGGCAGACCGCAATCaaa < 1:953723/36‑1 (MQ=255)
aTGCTGGCGGTGGAGAAGGGCAGACCGCAATCaaaa < 1:7379301/36‑1 (MQ=255)
tGCTGGCGGTGGGGAAGGGGAGACCGCAAACAAAAt > 1:3766697/1‑36 (MQ=25)
tGCTGGCGGTGGAGAAGGGGAGAACGCAATCAAAAt > 1:3681063/1‑36 (MQ=37)
cTGGCGGTGGAGAAGGGCAGACCGCAATCAAAATgg < 1:3763646/36‑1 (MQ=255)
tGGCGGTGGAGAAGGGCAGACCGCAATCAAAATGGc > 1:1626870/1‑36 (MQ=255)
tGGCGGTGGAGAAGGGCAGACCGCAATCAAAATGGc < 1:7872747/36‑1 (MQ=255)
tGGCGGTGGAGAAGGGCAGACCGCAATCAAAATGGc < 1:4768258/36‑1 (MQ=255)
gCGGTGGAGAAGGGCAGACCGCAATCAAAATGGCCg > 1:2171491/1‑36 (MQ=255)
gCGGTGGAGAAGGGCAGACCGCAATCAAAATGGCCg < 1:6682047/36‑1 (MQ=255)
gCGGTGGAGAAGGGCAGACCGCAATCAAAATGGCCg > 1:4659477/1‑36 (MQ=255)
ggTGGAGAAGGGCAGACCGCAATCAAAATGGCCGAg > 1:7130143/1‑36 (MQ=255)
ggAGAAGGGCAGACCGCAATCAAAATGGCCGAGCGt > 1:2785463/1‑36 (MQ=255)
agaAGGGCAGACCGCAATCAAAATGGCCGAGCGTgg > 1:5708186/1‑36 (MQ=255)
agaAGGGCAGACCGCAATCAAAATGGCCGAGCGTgg > 1:1921327/1‑36 (MQ=255)
aaGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGc > 1:751440/1‑36 (MQ=255)
aaGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGc > 1:6452252/1‑36 (MQ=255)
aGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGCa > 1:7573888/1‑36 (MQ=255)
aGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGCa > 1:5880123/1‑36 (MQ=255)
aGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGCa < 1:7790685/36‑1 (MQ=255)
gggCAGACCGCAATCAAAATGGCCGAGCGTGGGCAt > 1:6808308/1‑36 (MQ=255)
gggCAGACCGCAATCAAAATGGCCGAGCGTGGGCAt > 1:4274286/1‑36 (MQ=255)
ggCAGACCGCAATAAAAATGGCCGAGCGTGGGCATc < 1:5308408/36‑1 (MQ=255)
gCAGACCGCAATCAAAAGGGCCGAGCGTGGGCATCa < 1:2663974/36‑1 (MQ=255)
cAGACCGCAATCAAAATGGCCGAGCGTGGGCATCAg > 1:5767853/1‑36 (MQ=255)
cAGACCGCAATCAAAATGGCCGAGCGTGGGCATCAg < 1:1255801/36‑1 (MQ=255)
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CTGCGTGTGCTGGATGCTGGCGGTGGAGAAGGGCAGACCGCAATCAAAATGGCCGAGCGTGGGCATCAG > REL606/990764‑990832
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|