Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,303,805 | A→G | 18.0% | S59P (TCC→CCC) | phnC ← | phosphonate/organophosphate ester transporter subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,303,805 | 0 | A→G | 18.0% | 2.6 ‑2.4 ‑0.2 | 24 | 175 | phnC | phosphonate/organophosphate ester transporter subunit |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (8/11): total (13/11) | ||||||||||
Fisher's exact test strand distribution p-value = 9.32e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.33e-01 |
GTGCGGCCCAGCAGCTCGATATGGCTGCCGGCGGATTTATCGCCGGTAATCAAACCGCTTAAGTGACGTA > REL606/4303771‑4303840
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gtgCGGCCCAGCAGCTCGATATGGCTGCCGGCGGAt < 1:1646692/36‑1 (MQ=255)
tgCGGCCCAGCAGCTCGATATGGCTGGCGGCGGGtt > 1:4092932/1‑36 (MQ=37)
ggCCCAGCAGCTCGATATGGCTGATGGCGGTGTTAt > 1:1219957/1‑36 (MQ=16)
gCCCAGCAGCTCGAAATGGCTGCCGGCGGATTTATc < 1:1865854/36‑1 (MQ=255)
agcagcTCGATATGGCTGCCGGCGGATTTATCGCCg < 1:4838871/36‑1 (MQ=255)
cagcTCGATATGGCTGCCGGCGGATTTATCGCCGGt < 1:2844283/36‑1 (MQ=255)
agcTCGATATGGCTGCCGGCGGGTTTTTCGCCGGTa > 1:5337344/1‑36 (MQ=37)
agcTCGATATGGCTGCCGGCGGATTTATCGCCGGTa < 1:2258157/36‑1 (MQ=255)
agcTCGATATGGCTGCCGGCGGATTTATCGCCGGTa < 1:4002806/36‑1 (MQ=255)
cTCGATATGGCTGCCGGCGGGTTTTTTGCCGGTAAt > 1:3610190/1‑36 (MQ=25)
gATATGGCTGCCGGCGGGTTTTTCGCCGGGAATCaa > 1:5588770/1‑36 (MQ=25)
tatGGCTGCCGGCGGATTTTTCTCCGGTAATCaaaa > 1:6250616/1‑35 (MQ=37)
ctGGGTGCCGGAGGATTTATCGCCGGTAATCAAAcc < 1:1274075/35‑1 (MQ=25)
atGGCTGCCGGCGGATTTATCGCCGGTAATCAAAcc > 1:4442295/1‑36 (MQ=255)
atGGCTGCCGGCGGATTTATCGCCGGGAATCaaaac > 1:5810866/1‑34 (MQ=37)
ggCTGCCGGCGGATTTATCGCCGGTAATCAAACCGc > 1:3990413/1‑36 (MQ=255)
cTGGCGGCGGATTTATCTCCGGTAATCAAACCGCtt < 1:6377422/36‑1 (MQ=25)
cTGCCGGCGGATTTATCGCCGGTAATCAAACCGCtt < 1:4680564/36‑1 (MQ=255)
tGCCGGCGGATTTATCGCCGGTAATCAAACCGCTTa > 1:5800191/1‑36 (MQ=255)
tGCCGGCGGATTTATCGCCGGTAATCAAACCGCTTa > 1:7425808/1‑36 (MQ=255)
cggcggATTTATCGCCGGTAATCAAACCGCTTAAGt < 1:1625741/36‑1 (MQ=255)
gcggATTTATCGCCGGTAATCAAACCGCTTAAGTGa > 1:7252952/1‑36 (MQ=255)
cggATTTATCGCCGGTAATCAAACCGCTTAAGTGAc < 1:1431377/36‑1 (MQ=255)
gATTTATCGCCGGTAATCAAACCGCTTAAGTGACGt > 1:4466298/1‑36 (MQ=255)
aTTTATCGCCGGTAATCAAACCGCTTAAGTGACGTa < 1:6360596/36‑1 (MQ=255)
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GTGCGGCCCAGCAGCTCGATATGGCTGCCGGCGGATTTATCGCCGGTAATCAAACCGCTTAAGTGACGTA > REL606/4303771‑4303840
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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