Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,209,196 | C→A | 18.5% | intergenic (‑123/‑89) | pepE ← / → yjbC | peptidase E/23S rRNA pseudouridine synthase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,209,196 | 0 | C→A | 18.5% | 4.7 ‑4.5 0.0 | 58 | intergenic (‑123/‑89) | pepE/yjbC | peptidase E/23S rRNA pseudouridine synthase |
Reads supporting (aligned to +/- strand): new base (1/12): ref base (21/24): total (22/36) | ||||||||||
Fisher's exact test strand distribution p-value = 1.11e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TGCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCAAGCCAATGGAAATAACAAATAGTTCGCTCAT > REL606/4209161‑4209228
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tGCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTc < 1:8337731/36‑1 (MQ=255)
tGCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTc < 1:4864862/36‑1 (MQ=255)
tGCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTc < 1:698544/36‑1 (MQ=255)
gCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCa > 1:5627072/1‑36 (MQ=255)
gCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCa < 1:5724745/36‑1 (MQ=255)
gCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCa > 1:6144051/1‑36 (MQ=255)
cgtCTGGAAAGTGATTTGAGCAGGTAACGAATTCaa > 1:2336049/3‑36 (MQ=255)
cTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCaa < 1:8125149/36‑1 (MQ=255)
cTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCaa < 1:2753194/36‑1 (MQ=255)
tCTGGAAAGTGATTTGAGCAGGTAACGAATTCAAGc > 1:7298891/1‑36 (MQ=255)
tGGAAAGTGATTTGAGCAGGTAACGAATTCAAGCCa > 1:3579173/1‑36 (MQ=255)
ggAAAGTGATTTGAGCAGGTAACTAATTCAAGCCaa < 1:3759719/36‑1 (MQ=255)
ggAAAGTGATTTGAGCAGGTAACGAATTCAAGCCaa < 1:5478693/36‑1 (MQ=255)
ggAAAGTGATTTGAGCAGGTAACGAATTCAAGCCaa < 1:2654363/36‑1 (MQ=255)
aaaGTGATTTGAGCAGGTAACGAATTCAAGCCAATg > 1:4960983/1‑36 (MQ=255)
aaaGTGATTTGAGCAGGTAACGAATTCAAGCCAATg > 1:2625425/1‑36 (MQ=255)
aaaGGGAGTTGAGCAGGTAACGAATTCAAGCCATTg > 1:2659977/1‑36 (MQ=37)
aaGTGATTTGAGCAGGGAACGAATTCAAGCCAATgg > 1:338409/1‑36 (MQ=255)
aaGTGATTTGAGCAGGGAACGAATTAAATCCAATgg > 1:2809693/1‑36 (MQ=37)
aGTGATTTGAGCAGGTAACGAATTCAAGCCAATGGa < 1:6341659/36‑1 (MQ=255)
aGTGATTTGAGCAGGTAACGAATTCAAGCCAATGGa < 1:50962/36‑1 (MQ=255)
gTGATTTGAGCAGGTAACGAATTCAAGCCAATGGaa < 1:6269843/36‑1 (MQ=255)
gTGATTTGAGCAGGTAACGAATTCAAGCCAATGGaa < 1:8287507/36‑1 (MQ=255)
gTGATTTGAGCAGGTAACGAATTCAAGCCAATGGaa < 1:1032894/36‑1 (MQ=255)
tGATTTGAGCAGGTAACGAATTCAAGCCAATGGaaa > 1:2711624/1‑36 (MQ=255)
tGATTTGAGCAGGTAACGAATGCAAGACAATGGaaa > 1:624447/1‑36 (MQ=38)
gATTTGAGCAGGTAACGAATTCAAGCCAATGGAAAt < 1:6463321/36‑1 (MQ=255)
gATTTGAGCAGGTAACGAATTCAAGCCAATGGAAAt < 1:1412150/36‑1 (MQ=255)
gATTTGAGCAGGTAACGAATTCAAGCCAATGGAAAt < 1:743695/36‑1 (MQ=255)
gATTTGAGAAGGTAACGAATTCAAGCCAATGGAAAt < 1:2773095/36‑1 (MQ=255)
aTTTGAGCAGGTAACGAATTCAAGCCAATGGAAATa > 1:5009451/1‑36 (MQ=255)
aTTTGAGCAGGTAACGAATTCAAGCCAATGGAAATa < 1:4007363/36‑1 (MQ=255)
tttGAGCAGGTAACGAATTAAAGCCAATGGAAATaa < 1:4166894/36‑1 (MQ=255)
tttGAGCAGGTAACGAATTAAAGCCAATGGAAATaa < 1:5659609/36‑1 (MQ=255)
tttGAGAATATAACGAATTCACGCCAATGGAAATaa < 1:138390/36‑1 (MQ=19)
tttGAGAAGGTAACTAATTAAAGCCAATGGAAATaa < 1:7454277/36‑1 (MQ=25)
gAGCAGGTAACGAATTAAAGCCAATGGAAATAACaa < 1:1282897/36‑1 (MQ=255)
gAGCAGGCAACGAATTCATGCCAATGGAAAGAACaa > 1:5970749/1‑36 (MQ=25)
gAGAAGGTAACGAATTCAAGCCAATGGAAATAACaa < 1:2144834/36‑1 (MQ=255)
agaaGGTAACGAATTCAAGCCAATGGAAATAACaaa < 1:1967189/33‑1 (MQ=255)
aGCAGGTAACGAATTCAAGCCAATGGAAATAACaaa > 1:8086248/1‑36 (MQ=255)
aGCAGGTAACGAATTCAAGCCAATGGAAATAACaaa > 1:1923653/1‑36 (MQ=255)
aGCAGGTAACGAATTAAAGCCAATGGAAATAACaaa < 1:8463600/36‑1 (MQ=255)
gCAGGTAACGAATTCAAGCCAATGGAAATAACAAAt > 1:6325811/1‑36 (MQ=255)
aaGGTAACGAATTAAAGCCAATGGAAATAACAAATa < 1:3324893/35‑1 (MQ=255)
ggTAAAGAATTCAAGCCAATGGAAATAACAAATAGt < 1:2270225/36‑1 (MQ=255)
aaaaCGAATTAAAGCCAATGGAAATAACAAATAGtt < 1:5354375/34‑1 (MQ=38)
tAACGAATTCAAGCCAATGGAAATAACAAATAGTTc > 1:2311065/1‑36 (MQ=255)
tAAAGAATTAAAGCCAATGGAAATAACAAATAGTTc < 1:2796415/36‑1 (MQ=37)
aaagAATTCAAGCCAATGGAAATAACAAATAGTTCg < 1:736073/33‑1 (MQ=255)
aaCGAATTCAAGCCAATGGAAATAACAAATAGTTCg > 1:7244371/1‑36 (MQ=255)
acaaaTTAAAGCCAATGGAAATAACAAATAGTTCGc < 1:1088055/33‑1 (MQ=37)
aagAATTCAAGCCAATGGAAATAACAAATAGTTCGc < 1:7920296/34‑1 (MQ=255)
aaaaaTTCAAGCCAATGGAAATAACAAATAGTTCGc < 1:7092076/33‑1 (MQ=255)
agAATTAAACCCAATTGAAATAACAAATAGTTCACt < 1:1160883/35‑1 (MQ=16)
gAATTCAAGCCAATGGAAATAACAAATAGTTCGCTc < 1:6224742/36‑1 (MQ=255)
gAATTCAAGCCAATGGAAATAACAAATAGTTCGCTc > 1:2538215/1‑36 (MQ=255)
gAATTCAAGCCAATGGAAATAACAAATAGTTCGCTc > 1:8338442/1‑36 (MQ=255)
aaTTCAAGCCAATGGAAATAACAAATAGTTCGCTCa > 1:7651124/1‑36 (MQ=255)
aaTTAAAGCCAATGGAAATAACAAATAGTTCGCTCa < 1:52655/36‑1 (MQ=255)
aTTAAAGCCAATGGAAATAACAAATAGTTCGCTCAt < 1:2013904/36‑1 (MQ=255)
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TGCTTCTGGAAAGTGATTTGAGCAGGTAACGAATTCAAGCCAATGGAAATAACAAATAGTTCGCTCAT > REL606/4209161‑4209228
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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