Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,499,315 | G→A | 36.6% | intergenic (‑110/‑179) | maeB ← / → talA | malic enzyme/transaldolase A |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,499,315 | 0 | G→A | 36.6% | 51.6 ‑3.3 ‑1.1 | 50 | intergenic (‑110/‑179) | maeB/talA | malic enzyme/transaldolase A |
Reads supporting (aligned to +/- strand): new base (4/14): ref base (17/14): total (22/28) | ||||||||||
Fisher's exact test strand distribution p-value = 3.72e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.13e-02 |
TATTACCCTGCCGGAGTCTACAGACTTTGAGCAAGTCCAAACTCTCACCATTAATATAATGTTTTGGTA > REL606/2499281‑2499349
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tattaCCCTGCCGGAGTCTACAGACTTTGAGCAAGt > 1:1475142/1‑36 (MQ=255)
tattaCCCTGCCGGAGTCTACAGACTTTGAGCAAGt > 1:5767336/1‑36 (MQ=255)
tattaCCCTGCCGGAGTCTACAGACTTTGAGCAAGt > 1:2656321/1‑36 (MQ=255)
attaCCCTGCCGGAGTCTACAGACTTTGAGCAAGTc > 1:2791438/1‑36 (MQ=255)
attaCCCTGCCGGAGTCTACAGACTTTGAGCAAATc < 1:325024/36‑1 (MQ=255)
ttaCCCTGCCGGAGTCTACAGACTTTGAGCAAGTcc < 1:5831472/36‑1 (MQ=255)
ttaCCCTGCCGGAGTCTACAGACTTTGAGCAAGTcc > 1:3618106/1‑36 (MQ=255)
ttaCCCTGCCGGAGTCTACAGACTTTGAGCAAGTcc < 1:5584689/36‑1 (MQ=255)
taCCCTGCCGGAGTCTACAGACTTTGAGCAATTCCa > 1:4964255/1‑36 (MQ=255)
taCCCTGCCGGAGTCTACAGACTTTGAGCAAATCCa < 1:4047579/36‑1 (MQ=255)
aCCCTGCCGGAGTCTACAGACTTTGAGCAAGTCCaa < 1:720915/36‑1 (MQ=255)
ccTGCCGGAGTCTACAGACTTTGAGCAAATCCAAAc < 1:2328268/36‑1 (MQ=255)
cTGCCGGAGTCTACAGACTTTGAGCAAGTCCAAAct > 1:5608429/1‑36 (MQ=255)
cTGCCGGAGTCTACAGACTTTGAGCAAATCCAAAct < 1:2712642/36‑1 (MQ=255)
gCCGGAGTCTACAGACTTTGAGCAAGTCCAAActct > 1:6157217/1‑36 (MQ=255)
ccGGAGTCTACAGACTTTGAGCAAGTCCAAACtctc < 1:3116433/36‑1 (MQ=255)
ccGGAGTCTACAGACTTTGAGCAAATCCAAACcctc < 1:5746625/36‑1 (MQ=255)
cGGAGTCTACAGACTTTGAGCAAGTCCAAACTCTCa > 1:2345843/1‑36 (MQ=255)
cGGAGTCTACAGACTTTGAGCAAGTCCAAACTCTCa > 1:883510/1‑36 (MQ=255)
ggAGTCTACAGACTTTGAGCAAGTCCAAACTCTCAc < 1:6567302/36‑1 (MQ=255)
gAGTCTACAGACTTTGAGCAAATCCAAACTCTCAcc < 1:3433651/36‑1 (MQ=255)
gTCTACAGACTTTGATCAAATCCAAACTCTCACCAt < 1:449594/36‑1 (MQ=38)
gTCTACAGACTTTGAGCAAATCCAAACTCTCACCAt < 1:6065295/36‑1 (MQ=255)
gTCTACAGACTTTGAGCAAATCCAAACTCTCACCAt < 1:7408112/36‑1 (MQ=255)
gTCTACAGACTTTGAGCAAATCCAAACTCTCACCAt < 1:158234/36‑1 (MQ=255)
tCTACAGACTTTGAGCAAGTCCAAACTCTCACCAtt < 1:5238537/36‑1 (MQ=255)
tCTACAGACTTTGAGCAAATCCAAACTCTCACCAtt < 1:306478/36‑1 (MQ=255)
cTACAGACTTTGAGCAAATCCAAACTCTCACCATTa > 1:2592108/1‑36 (MQ=255)
cTACAGACTTTGAGCAAATCCAAACTCTCACCATTa < 1:7378551/36‑1 (MQ=255)
tACAGACTTTGAGCAAGTCCAAACTCTCACCATTaa < 1:4297836/36‑1 (MQ=255)
tACAGACTTTGAGCAAGTCCAAACTCTCACCATTaa > 1:7831067/1‑36 (MQ=255)
tACAGACTTTCAGCAAGTCCAAACTCTCACCATTaa < 1:44429/36‑1 (MQ=255)
aCAGACTTTGAGCAAATCCAAACTCTCACCATTAat > 1:5309788/1‑36 (MQ=255)
aCAGACTTTGAGCAAATCCAAACGCTCACCATTAat < 1:2661325/36‑1 (MQ=37)
cAGACTTTGAGCAAATCCAAACTCTCACCATTAata < 1:2415763/36‑1 (MQ=255)
aGACTTTGAGCAAGTCCAAACTCTCACCATTAatat < 1:7177009/36‑1 (MQ=255)
aGACTTTGAGCAAGTCCAAACTCTCACCATTAatat < 1:1449477/36‑1 (MQ=255)
aGACTTTGAGCAAATCCAAACTCTCACCATTAatat > 1:3328364/1‑36 (MQ=255)
cTTTGAGCAAGTCCAAACTCTCACCATTAATATAAt > 1:1801617/1‑36 (MQ=255)
ttGAGCAAGTCCAAACTCTCACCATTAATATAATGt > 1:3949431/1‑36 (MQ=255)
ttGAGCAAGTCCAAACTCTCACCATTAATATAATGt < 1:28925/36‑1 (MQ=255)
tGAGCAAGTCCAAACTCTCACCATTAATATAATGtt > 1:7518597/1‑36 (MQ=255)
gAGCAAGTCCAAACTCTCACCATTAATATAATGttt > 1:452634/1‑36 (MQ=255)
aGCAAGTCCAAACTCTCACCCTTAATATAATGtttt > 1:3914068/1‑36 (MQ=255)
aGCAAATCCAAACTCTCACCATTAATATAATGtttt > 1:6777268/1‑36 (MQ=255)
gCAAGTCCAAACTCTCACCATTAATATAATGTTTTg < 1:212955/36‑1 (MQ=255)
cAAGTCCAAACTCTCACCATTAATATAATGTTTTgg < 1:5712616/36‑1 (MQ=255)
aaGTCCAAACTCTCACCATTAATATAATGTTTTGGt > 1:521730/1‑36 (MQ=255)
aaGTCCAAACTCTCACCATTAATATAATGTTTTGGt > 1:2612790/1‑36 (MQ=255)
aGTCCAAACTCTCACCATTAATATAATGTTTTGGta < 1:7891234/36‑1 (MQ=255)
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TATTACCCTGCCGGAGTCTACAGACTTTGAGCAAGTCCAAACTCTCACCATTAATATAATGTTTTGGTA > REL606/2499281‑2499349
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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