Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,398,4380A→G100.0% 2.6 1797tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (0/0):  total (0/1)

CACCAGCACGGCCT.TCGTCCAGCAGTTTGCGGAAC  >  REL606/3398418‑3398452
                     |              
ccccAGCACGGCCTGTTGGCCGGCGGTTTGCGGCAc  <  1:5306370/34‑1 (MQ=25)
                     |              
CACCAGCACGGCCT.TCGTCCAGCAGTTTGCGGAAC  >  REL606/3398418‑3398452

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 34 ≤  ATCG