![]() |
breseq version 0.24 revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,318,480 | 0 | A→T | 16.0% | 6.9 ‑15.2 0.0 | 96 | 759 | adiA | biodegradative arginine decarboxylase |
* | REL606 | 3,304,275 | 0 | C→A | 16.4% | 5.9 ‑17.0 0.0 | 92 | 400 | sspB | ClpXP protease specificity‑enhancing factor |
* | REL606 | 4,415,713 | 0 | T→. | 4.8% | 4.6 ‑1.4 ‑0.4 | 62 | coding (851/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
* | REL606 | 4,182,457 | 0 | A→G | 10.5% | 3.6 ‑16.9 0.0 | 75 | 926 | zraS | sensory histidine kinase in two‑component regulatory system with ZraR |
* | REL606 | 3,369,866 | 1 | .→G | 4.8% | 3.5 ‑2.8 0.0 | 63 | coding (138/390 nt) | rpsK | 30S ribosomal protein S11 |
* | REL606 | 2,779,430 | 0 | G→T | 11.8% | 3.3 ‑12.7 0.0 | 93 | 969 | cysJ | sulfite reductase, alpha subunit, flavoprotein |
* | REL606 | 3,584,615 | 0 | T→A | 8.8% | 3.0 ‑6.0 ‑0.0 | 70 | 442 | yhiF | predicted DNA‑binding ranscriptional regulator |
* | REL606 | 3,485,893 | 0 | G→T | 9.9% | 2.6 ‑9.5 0.0 | 78 | 787 | rtcB | hypothetical protein |
* | REL606 | 2,819,998 | 0 | G→T | 9.6% | 1.7 ‑8.7 ‑0.0 | 73 | 105 | xni | exonuclease IX |
* | REL606 | 3,171,682 | 0 | G→T | 8.7% | 1.7 ‑9.5 ‑0.0 | 81 | 286 | ygjT | predicted inner membrane protein, part of terminus |
* | REL606 | 3,292,478 | 0 | A→. | 2.6% | 1.6 ‑0.7 ‑0.1 | 77 | coding (2612/4554 nt) | gltB | glutamate synthase, large subunit |
* | REL606 | 4,437,366 | 0 | C→T | 6.8% | 1.4 ‑3.8 0.0 | 71 | 534 | yjfF | predicted sugar transporter subunit: membrane component of ABC superfamily |
* | REL606 | 1,485,450 | 0 | A→G | 7.1% | 0.8 ‑5.4 0.0 | 88 | 579 | ydcV | predicted spermidine/putrescine transporter subunit |
* | REL606 | 4,231,619 | 0 | T→C | 8.4% | 0.7 ‑5.3 0.0 | 76 | 182 | ubiC | chorismate pyruvate lyase |
* | REL606 | 1,950,038 | 1 | .→C | 3.9% | 0.6 ‑3.1 0.0 | 51 | coding (1424/1662 nt) | tar | methyl‑accepting chemotaxis protein II |
* | REL606 | 4,476,233 | 0 | A→T | 7.7% | 0.6 ‑7.1 ‑0.0 | 67 | 347 | idnO | gluconate 5‑dehydrogenase |
* | REL606 | 573,202 | 0 | T→G | 100.0% | 0.5 | 6 | 287 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,204 | 0 | C→G | 100.0% | 0.4 | 6 | 285 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 1,747,301 | 0 | G→T | 9.8% | 0.4 ‑10.1 0.0 | 74 | 961 | ydiK | predicted inner membrane protein |
* | REL606 | 430,298 | 0 | C→A | 100.0% | 0.2 | 2 | 490 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 1,929,920 | 0 | T→. | 2.5% | 0.2 0.0 ‑0.0 | 81 | coding (319/567 nt) | yecD | predicted hydrolase |
* | REL606 | 2,495,437 | 0 | A→C | 4.1% | 0.2 0.0 ‑0.0 | 72 | 395 | eutQ | hypothetical protein |
* | REL606 | 2,654,362 | 0 | G→T | 7.8% | 0.2 ‑5.9 ‑0.0 | 77 | 1220 | clpB | protein disaggregation chaperone |
* | REL606 | 1,498,280 | 0 | A→G | 100.0% | 0.1 | 2 | 197 | ECB_01413 | conserved hypothetical protein |
* | REL606 | 2,527,908 | 1 | .→C | 3.7% | 0.0 ‑0.7 ‑0.0 | 54 | coding (166/1581 nt) | hyfF | NADH dehydrogenase subunit N |
* | REL606 | 429,840 | 0 | C→A | 100.0% | ‑0.1 | 1 | 948 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,349 | 0 | G→T | 100.0% | ‑0.1 | 1 | 439 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,518 | 0 | T→G | 100.0% | ‑0.1 | 1 | 270 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,585 | 0 | T→A | 100.0% | ‑0.1 | 1 | 203 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 557,811 | 0 | G→A | 100.0% | ‑0.1 | 1 | 463 | ECB_00515 | conserved hypothetical protein |
* | REL606 | 572,332 | 0 | C→A | 100.0% | ‑0.1 | 1 | 1157 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 572,344 | 0 | C→G | 100.0% | ‑0.1 | 1 | 1145 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 572,430 | 0 | T→G | 100.0% | ‑0.1 | 2 | 1059 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,108 | 0 | G→T | 100.0% | ‑0.1 | 1 | 381 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,132 | 0 | G→T | 100.0% | ‑0.1 | 1 | 357 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,269 | 0 | C→T | 100.0% | ‑0.1 | 1 | 220 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,279 | 0 | G→A | 100.0% | ‑0.1 | 1 | 210 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 1,111,154 | 0 | A→C | 100.0% | ‑0.1 | 1 | 222 | insF‑1 | putative transposase for IS3 |
* | REL606 | 1,111,522 | 0 | A→G | 100.0% | ‑0.1 | 1 | 210 | insE‑1 | putative transposase‑related protein |
* | REL606 | 1,422,200 | 0 | C→A | 100.0% | ‑0.1 | 1 | 545 | ECB_01342 | conserved hypothetical protein |
* | REL606 | 1,422,221 | 0 | C→A | 100.0% | ‑0.1 | 1 | 566 | ECB_01342 | conserved hypothetical protein |
* | REL606 | 1,425,203 | 0 | A→C | 100.0% | ‑0.1 | 1 | 78 | pinR | predicted site‑specific recombinase |