Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,432,533 | C→A | 15.4% | intergenic (‑143/‑131) | ydbK ← / → ydbJ | fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,432,533 | 0 | C→A | 15.4% | 3.0 ‑3.8 ‑0.0 | 26 | intergenic (‑143/‑131) | ydbK/ydbJ | fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (15/7): total (15/11) | ||||||||||
Fisher's exact test strand distribution p-value = 2.21e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.46e-01 |
TCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAA > REL606/1432498‑1432567
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tCCCCCACATCAGCGTAATGAATGTTTTGATCAAAc < 1:5441345/36‑1 (MQ=255)
cacaTCAGCGTAATGAATGTTTTGATCAAACAGAgg < 1:1890922/36‑1 (MQ=255)
acaTCAGCGTAATGAATGTTTTGATCAAACAGAggg > 1:3637147/1‑36 (MQ=255)
acaTCAGCGTAATGAATGTTTTGATCAAACAGAggg > 1:3390384/1‑36 (MQ=255)
aTCAGCGTAATGAATGTTTTGATCAAACAGAGGGCa > 1:892989/1‑36 (MQ=255)
tCAGCGTAATGAATGTTTTGATCAAACAGAGGGCaa < 1:2810072/36‑1 (MQ=255)
aGCGTAATGAATGTTTTGATCAAACAGAGGGCaaaa < 1:4324160/36‑1 (MQ=255)
gCGTAATGAATGTTTTGATCAAACAGAGGGCaaaaa < 1:3749141/36‑1 (MQ=255)
gTAATGAATGTTTTGATCAAACAGAGGGCaaaaaaa < 1:6403846/36‑1 (MQ=255)
atgaatgTTTTGATCAAACAGAGGGCAAAAAAATAg > 1:7421451/1‑36 (MQ=255)
tgaatgTTTTGATCAAACAGAGGGCAAAAAAATAGc > 1:1082893/1‑36 (MQ=255)
gaatgTTTTGATCAAACAGAGGGCAAAAAAATAGcc < 1:6466513/36‑1 (MQ=255)
gaatgTTTCGATCAAACAGAGGGCAAAAAAATAGcc < 1:6228241/36‑1 (MQ=255)
aatgTTTTGATCAAACAGAGGGCAAAAAAATAGCCa > 1:508888/1‑36 (MQ=255)
aaggTTTTGATCAAACAGAGGGCAAAAAAATAGCCa > 1:582921/4‑36 (MQ=255)
gTTTTGATCAAACAGAGGGCAAAAAAATAGCCATaa > 1:7205709/1‑36 (MQ=255)
gTTTTGATCAAACAGAGGGCAAAAAAATAGCCATaa > 1:5483200/1‑36 (MQ=255)
gTTTTGATAAAAAAGAGGGAAAAAAAATAGCCATaa < 1:3669274/36‑1 (MQ=25)
aaaaaaAAGAGGCAAAAAAAATAGCCATAAAAAAGt < 1:5205329/33‑1 (MQ=16)
aTCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGt > 1:7727925/1‑36 (MQ=255)
tCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTa > 1:2807549/1‑36 (MQ=255)
aaaaaAAGAGGAAAAAAAAATAGCCATAAAAAAGTa < 1:3753493/34‑1 (MQ=21)
cAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTaa > 1:1559925/1‑36 (MQ=255)
aaaaAAGAGGGAAAAAAAATAGCCATAAAAAAGTaa < 1:5909126/35‑1 (MQ=37)
aaaCAGAGGGCAAAAAAATAGCCATAAAAAAGTaaa > 1:2689463/1‑36 (MQ=255)
aCAGAGGGCAAAAAAATAGCCATAAAAAAGTaaaaa > 1:2544874/1‑36 (MQ=255)
aCAGAGGGCAAAAAAATAGCCATAAAAAAGAaaaaa > 1:2233168/1‑36 (MQ=255)
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TCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAA > REL606/1432498‑1432567
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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