Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 648,332 | A→T | 11.1% | V189E (GTG→GAG) | mrdB ← | cell wall shape‑determining protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 648,332 | 0 | A→T | 11.1% | 14.3 ‑1.5 ‑0.7 | 63 | 566 | mrdB | cell wall shape‑determining protein |
Reads supporting (aligned to +/- strand): new base (6/1): ref base (32/24): total (38/25) | ||||||||||
Fisher's exact test strand distribution p-value = 2.28e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.04e-01 |
AGAACCACAGAATCGGAATGAACGCCGCTACCAGCACTACTGCGACGCCAATCAGACGCCAGCTAAGGCCA > REL606/648297‑648367
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agaaCCACAGAATCGGAATGAACGCCGCTACCAGCa > 1:2715540/1‑36 (MQ=255)
agaaCCACAGAATCGGAATGAACGCCGCTACCAGCa < 1:5205610/36‑1 (MQ=255)
gaaCCACAGAATCGGAATGAACGCCGCTACCAGCac < 1:5271490/36‑1 (MQ=255)
aaCCACAGAATCGGAATGATCGCCGCTACCAGCact > 1:2641008/1‑36 (MQ=255)
aaCCACAGAATCGGAATGAACGCCGCTACCAGCact > 1:1328588/1‑36 (MQ=255)
aaCCACAGAATCGGAATGAACGCCGCTACCAGCact > 1:2287517/1‑36 (MQ=255)
aCCACAGAATCGGAATGAACGCCGCTACCAGCacta > 1:4375914/1‑36 (MQ=255)
aCCACAGAATCGGAATGAACGCCGCTACCAGCacta < 1:5611517/36‑1 (MQ=255)
aCCACAGAATCGGAATGAACGCCGCTACCAGCacta > 1:5886459/1‑36 (MQ=255)
ccACAGAATCGGAATGAACGCCGCTACCAGCactac > 1:2187745/1‑36 (MQ=255)
ccACAGAATCGGAATGAACGCCGCTACCAGCactac < 1:3147675/36‑1 (MQ=255)
cacaGAATCGGAATGAACGCCGCTACCAGCactact < 1:4370578/36‑1 (MQ=255)
acaGAATCGGAATGAACGCCGCTATCAGCACTACTg > 1:3903793/1‑36 (MQ=255)
acaGAATCGGAATGAACGCCGCTACCAGCACTACTg < 1:3295281/36‑1 (MQ=255)
aaaGAATCGGAATGAACGCCGCTACCAGCACTACTg < 1:5637391/34‑1 (MQ=255)
caGAATCGGAATGAACGCCGCTACCAGCACTACTGc < 1:6695908/36‑1 (MQ=255)
caGAATCGGAATGAACGCCGCTACCAGCACTACTGc < 1:3706577/36‑1 (MQ=255)
aGAATCGGAATGAACGCCGCTACCAGCTCTACTGCg > 1:3963204/1‑36 (MQ=255)
aGAATCGGAATGAACGCCGCTACCAGCTCTACTGCg > 1:2939769/1‑36 (MQ=255)
aGAATCGGAATGAACGCCGCTACCAGCACTTCTGCg > 1:3837147/1‑36 (MQ=255)
aaTCGGAATGAACGCCGCTACCAGCTCTACTGCGAc < 1:3398861/36‑1 (MQ=255)
aaTCGGAATGAACGCCGCTACCAGCACTACTGCGAc > 1:3892725/1‑36 (MQ=255)
aaTCGGAATGAACGCCGCTACCAGCACTACTGCGAc > 1:2202204/1‑36 (MQ=255)
aaTCGGAATGAACGCCGCTACCAGCACTACTGCGAc > 1:6839245/1‑36 (MQ=255)
aTCGGAATGAACGCCGCTACCAGCTCTACTGCGACg > 1:5401307/1‑36 (MQ=255)
aTCGGAATGAACGCCGCTACCAGCACTACTGCGACg > 1:6842023/1‑36 (MQ=255)
aTCGGAATGAACGCCGCTACCAGCACTACTGCGACg > 1:217672/1‑36 (MQ=255)
aTCGGAATGAACGCCGCTACCAGCACTACTGCGACg > 1:5660031/1‑36 (MQ=255)
cGGAATGAACGCCGCTACCAGCACTACTGCGACGcc > 1:5316507/1‑36 (MQ=255)
ggAATGAACGCCGCTACCAGCACTACTGCGACGCCa > 1:6319833/1‑36 (MQ=255)
ggAATGAACGCCGCTACAAGCTATACTGCGACGCCa > 1:6638702/1‑36 (MQ=25)
gAATGAACGCCGCTACCAGCTCTACTGCGACGCCaa > 1:918360/1‑36 (MQ=255)
gAATGAACGCCGCTACCAGCACTACTGCGACGccga < 1:1731547/36‑3 (MQ=255)
gAATGAACGCCGCTACCAGCACTACTGCGACGCCaa > 1:1640053/1‑36 (MQ=255)
gAATGAACGCCGCTACCAGCACTACTGCGACGCCaa > 1:3747618/1‑36 (MQ=255)
gAATGAACGCCGCTACCAGCACTACTGCGACGCCaa > 1:5209908/1‑36 (MQ=255)
aaTGAACGCCGCTACCAGCACTACTGCGACGCCAAt > 1:5017219/1‑36 (MQ=255)
aaTAAACGCCGCTACCAGCACTACTGCGACGCCAAt < 1:2856332/36‑1 (MQ=255)
aTGAACGCCGCTACCAGCACTACTGCGACGCCAATc < 1:4237511/36‑1 (MQ=255)
aTGAACGCCGCTACCAGCACTACTGCGACGCCAATc > 1:480605/1‑36 (MQ=255)
aTGAACGCCGCTACCAGCACTACTGCGACGCCAATc > 1:3126787/1‑36 (MQ=255)
aTGAACGCCGCTACCAGCACTACTGCGACGCCAATc < 1:2517172/36‑1 (MQ=255)
tGAACGCCGCTACCAGCACTACTGCGACGCCAATCa < 1:942969/36‑1 (MQ=255)
tGAACGCCGCTACCAGCACTACTGCGACGCCAATCa < 1:2483819/36‑1 (MQ=255)
aaCGCCGCTACCAGCTCTACTGCGACGCCAATCAGa > 1:5329720/1‑36 (MQ=255)
aaCGCCGCTACCAGCACTACTGCGACGCCAATCAGa < 1:1235368/36‑1 (MQ=255)
aaCGCCGCTACCAGCACTACTGCGACGCCAATCAGa > 1:281124/1‑36 (MQ=255)
aaCGCCGCTAACAACACTACTGCGACGCCAATCAGa < 1:722799/36‑1 (MQ=37)
aCGCCGCTACCAGCACTACTTCGACGCCAATCAGAc < 1:3787633/36‑1 (MQ=255)
aCGCCGCTACCAGCACTACTGCGACGCCAATCAGAc < 1:6705746/36‑1 (MQ=255)
gccgcTACCAGCACTACTGCGACGCCAATCAGACGc < 1:7157647/36‑1 (MQ=255)
cgcTACCAGCACTACTGCGACGCCAATCAGACGCCa < 1:7508481/36‑1 (MQ=255)
gcTACCAGCACTACTGCGACGCCAATCAGACGCCAg > 1:4574216/1‑36 (MQ=255)
gcTACCAGCACTACTGCGACGCCAATCAGACGCCAg > 1:3560186/1‑36 (MQ=255)
cTACCAGCACTACTGCGACGCCAATCAGACGCCAGc > 1:1603841/1‑36 (MQ=255)
cTACCAGCACTACTGCGACGCCAATCAGACGCCAGc < 1:724004/36‑1 (MQ=255)
cTACCAGCACTACTGCGACGCCAATCAGACGCCAGc > 1:3312186/1‑36 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa > 1:7044331/1‑36 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa > 1:2203302/1‑36 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa > 1:4043887/1‑36 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa < 1:6193723/36‑1 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa < 1:1580497/36‑1 (MQ=255)
aCCAGCACTACTGCGACGCCAATCAGACGCCAGCTa < 1:1104473/36‑1 (MQ=255)
ccAGCACTACTGCGACGCCAATCAGACGCCAGCTaa > 1:1388809/1‑36 (MQ=255)
ccAGCACTACTGCGACGCCAATCAGACGCCAGCTaa > 1:6741403/1‑36 (MQ=255)
ccAGCACTACTGCGACGCCAATCAGACGCCAGCTaa < 1:2171934/36‑1 (MQ=255)
ccAGCACTACTGCGACGCCAATCAGACGCCAGCTaa > 1:4263310/1‑36 (MQ=255)
cAGCACTACTGCGACGCCAATCAGACGCCAGCTAAg < 1:260320/36‑1 (MQ=255)
aGCACTACTGCGACGCCAATCAGACGCCAGCTAAgg > 1:2125360/1‑36 (MQ=255)
aGCACTACTGCGACGCCAATCAGACGCCAGCTAAgg > 1:5498307/1‑36 (MQ=255)
gCACTACTGCGACGCCAATCAGACGCCAGCTAAGGc < 1:1486210/36‑1 (MQ=255)
gCACTACTGCGACGCCAATCAGACGCCAGCTAAGGc > 1:296326/1‑36 (MQ=255)
gCACTACTGCGACGCCAATCAGACGCCAGCTAAGGc < 1:434047/36‑1 (MQ=255)
gCACTACTGCGACCCCAATCAGACGCCAGCTAAGGc > 1:6471498/1‑36 (MQ=255)
cACTACTGCGACGNCAATCAGACGCCAGCTAAGGcc > 1:2324403/1‑36 (MQ=255)
actactGCGACGCCAATCAGACGCCAGCTAAGGCCa > 1:1771191/1‑36 (MQ=255)
actactGCGACGCCAATCAGACGCCAGCTAAGGCCa < 1:3247479/36‑1 (MQ=255)
actactGCGACGCCAATCAGACGCCAGCTAAGGCCa > 1:5005539/1‑36 (MQ=255)
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AGAACCACAGAATCGGAATGAACGCCGCTACCAGCACTACTGCGACGCCAATCAGACGCCAGCTAAGGCCA > REL606/648297‑648367
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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