New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3198500 =39 (0.710)10 (0.180) 5/62 NT 27.0% coding (563/990 nt) tdcB threonine dehydratase
?REL606 3424874 = 15 (0.240)intergenic (+92/‑34) nirD/nirC nitrite reductase small subunit/nitrite transporter

GGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAT  >  REL606/3424839‑3424909
                                   |                                   
gataacgtgattgtgccaattggtggtggcggtttt                                     >  1:7849497‑M2/36‑36 (MQ=255)
gataacgtgattgtgccaattggtggtggcggattt                                     >  1:1777642‑M2/36‑36 (MQ=255)
   atatTGCAGGACATTTTTTAAACTTTTTGTTTTAtt                                  <  1:3800162/36‑1 (MQ=255)
   aacgtgattgtgccaattggtggtggcggtttTTtt                                  >  1:5965446‑M2/33‑36 (MQ=255)
    tatTGCAGGACATTTTTTAAACTTTTTGTTTTAttt                                 >  1:2825679/1‑36 (MQ=255)
    acgtgattgtgccaattggtggtggcggtttTTttt                                 >  1:5006785‑M2/32‑36 (MQ=255)
    acgtgattgtgccaattggtggtggcgggttTAttt                                 >  1:5694395‑M2/32‑36 (MQ=255)
     atTGCAGGACATTTTTTAAACTTTTTGTTTTAtttt                                <  1:6462547/36‑1 (MQ=255)
     atTGCAGGACATTTTTTAAACTTTTTGTTTTAtttt                                <  1:1323453/36‑1 (MQ=255)
     atTGCAGGACATTTTTTAAACTTTTTGTTTTAtttt                                <  1:3472317/36‑1 (MQ=255)
      ttGCAGGACATTTTTTAAACTTTTTGTTTTAttttt                               <  1:491449/36‑1 (MQ=255)
        gattgtgccaattggtggtggcggtttTatttcttt                             >  1:1019580‑M2/28‑35 (MQ=255)
         cAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                            <  1:7728997/36‑1 (MQ=255)
         attgtgccaattggtggtggcggttttatttttttt                            >  1:3975229‑M2/27‑34 (MQ=255)
         attgtgccaattggtggtggcggtttTATTTCTTGt                            >  1:4145380‑M2/27‑36 (MQ=255)
         attgtgccaattggtggtggcggtttAATTTTTTGt                            >  1:7820478‑M2/27‑36 (MQ=255)
             tgccaattggtggtggcggtttTATTTTTTGttttt                        >  1:2665105‑M2/23‑36 (MQ=255)
               aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                      >  1:5774591/1‑36 (MQ=255)
               aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                      <  1:7069853/36‑1 (MQ=255)
                ttttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt                     <  1:7247000/36‑1 (MQ=255)
                   tttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt                  <  1:6391925/36‑1 (MQ=255)
                    ttAAACTTTTTGTTTTATTTTTTGTTTTTAtttttt                 <  1:8326224/36‑1 (MQ=255)
                     tAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTa                <  1:5138622/36‑1 (MQ=255)
                       aaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa              >  1:587224/1‑36 (MQ=255)
                          tttttCTTTTCTTTTGTTTTTTTTTTTTTTcaaact           <  1:3925794/36‑4 (MQ=2)
                              tGTTTTATTTTTTGTTTTTATTTTTTAAAGTATAAt       >  1:2312787/1‑36 (MQ=255)
                                   tATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt  <  1:7479334/36‑1 (MQ=255)
                                   tATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt  <  1:5346909/36‑1 (MQ=255)
                                   |                                   
GGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAT  >  REL606/3424839‑3424909

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG