Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 86.1% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =5 (0.110)28 (0.610) 20/52 NT 84.9% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169745 (0.090)34 (0.640) 25/60 NT 87.2% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAT  >  REL606/2775844‑2775912
                                 |                                   
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAgg                                   >  1:3903499‑M2/1‑34 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAgg                                   >  1:3597797‑M2/1‑34 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAgg                                   >  1:5685303‑M2/1‑34 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAgg                                   <  1:6184195‑M2/36‑3 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:8334341‑M2/1‑33 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  <  1:6095765‑M2/36‑4 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  <  1:2076012‑M2/36‑4 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:6906106‑M2/1‑33 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:2004617‑M2/1‑33 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 >  1:8250249‑M2/1‑32 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 <  1:3738810‑M2/36‑5 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 >  1:6896012‑M2/1‑32 (MQ=255)
   tttCATCGTCCAACAAAATGGGTGCAGTACAggttg                                <  1:6099994‑M2/36‑6 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttgt                               <  1:473341‑M2/36‑7 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               <  1:4521752‑M2/36‑7 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               >  1:1028636‑M2/1‑30 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               <  1:8030530‑M2/36‑7 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               >  1:1458779‑M2/1‑30 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               >  1:7955434‑M2/1‑30 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               <  1:7393889‑M2/36‑7 (MQ=255)
    ttCATCGTCCAACAAAATGGGTGCAGTACAggttga                               <  1:1971102‑M2/36‑7 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              <  1:4558667‑M2/36‑8 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:5011364‑M2/1‑29 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:5360282‑M2/1‑29 (MQ=255)
      cATCGTCCAACAAAATGGGTGCAGTACAggttgata                             <  1:1980262‑M2/36‑9 (MQ=255)
      cATCGTCCAACAAAATGGGTGCAGTACAggttgata                             >  1:4186223‑M2/1‑28 (MQ=255)
      cATCGTCCAACAAAATGGGTGCAGTACAggttgata                             <  1:5419093‑M2/36‑9 (MQ=255)
      cATCGTCCAACAAAATGGGTGCAGTACAggttgata                             >  1:7862010‑M2/1‑28 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            >  1:5832968‑M2/1‑27 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            >  1:4367855‑M2/1‑27 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            <  1:6128601‑M2/36‑10 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            >  1:722575‑M2/1‑27 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACA.GTTGATAGa                           <  1:2192112/36‑1 (MQ=11)
        tCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGa                           <  1:5670225/36‑1 (MQ=255)
        tCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGa                           <  1:2832098/36‑1 (MQ=255)
         cGTCCAACAAAATGGGTGCAGTACAGGTTGATAGaa                          <  1:2740080/36‑1 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAggttgatagtaa                         <  1:3561155‑M2/36‑13 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAggttgatagtaa                         <  1:1341657‑M2/36‑13 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                         >  1:3146301/1‑36 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                         <  1:6336035/36‑1 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                         <  1:1195829/36‑1 (MQ=255)
              aacaaAATGGGTGCAGTACAggttgatagtaaaata                     >  1:1801789‑M2/1‑20 (MQ=255)
              aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                     >  1:5444547/1‑36 (MQ=255)
              aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                     <  1:1017338/36‑1 (MQ=255)
               acaaAATGGGTGCAGTACAggttgatagtaaaatat                    <  1:1928510‑M2/36‑18 (MQ=255)
                caaAATGTGTGCAGTACAggttgatagtaaaatatc                   >  1:1189810‑M2/1‑18 (MQ=255)
                caaAATGGGTGCAGTACAgtttgatagtaaaatatc                   >  1:180869‑M2/1‑18 (MQ=255)
                caaAATGGGTGCAGTACAggttgatagtaaaatatc                   <  1:2489396‑M2/36‑19 (MQ=255)
                caaAATGGGTGCAGTACAggttgatagtaaaatatc                   <  1:3522247‑M2/36‑19 (MQ=255)
                caaAATGGGTGCAGTACAGGTTGATAGAAATATCGc                   <  1:7680579/36‑1 (MQ=255)
                caaAATGGGTGCAGTACAGGTTGATAGAAATATCGc                   <  1:5281958/36‑1 (MQ=255)
                caaAATGGGTGCAGTACAGGTTGATAGAAATATCGc                   >  1:1726976/1‑36 (MQ=255)
                 aaaaTGGGTGCAGTACAGGTTGATAGAAATATCGcc                  <  1:7598435/36‑1 (MQ=255)
                 aaaaTGGGTGCAGTACAGGTTGATAGAAATATCGcc                  <  1:2885913/36‑1 (MQ=255)
                  aaaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                 >  1:1079771/1‑36 (MQ=255)
                  aaaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                 <  1:7492285/36‑1 (MQ=255)
                  aaaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                 >  1:340860/1‑36 (MQ=255)
                    aTGGGTGCAGTACAggttgatagtaaaatatcactc               >  1:1508927‑M2/1‑14 (MQ=255)
                    aTGGGTGCAGTACAGGTTGATAGAAATATCGCCTgg               <  1:3311549/36‑1 (MQ=255)
                    aTGGGTGAAGTACAGGTTGATAGAAATATCGCCTgg               <  1:5235759/36‑1 (MQ=255)
                     tGGGTGCAGTACAggttgatagtaaaatatcactcg              <  1:7209542‑M2/36‑24 (MQ=255)
                      gggTGCAGTACAggttgatagtaaaatatcactcgg             <  1:5034331‑M2/36‑25 (MQ=255)
                       ggTGCAGTACAggttgatagtaaaatatcactcggg            >  1:889170‑M2/1‑11 (MQ=255)
                       ggTGCAGTACAggttgatagtaaaatatcactcggg            >  1:6790997‑M2/1‑11 (MQ=255)
                       ggTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc            <  1:8105182/36‑1 (MQ=255)
                        gTGGAGTACAggttgatagtaaaatatcactcgggg           >  1:5486160‑M2/1‑10 (MQ=255)
                        gTGCAGTACAggttgatagtaaaatatcactcgggg           <  1:856367‑M2/36‑27 (MQ=255)
                        gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt           >  1:5122730/1‑36 (MQ=255)
                        gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt           <  1:4660309/36‑1 (MQ=255)
                        gTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCt           <  1:1497871/36‑1 (MQ=255)
                         tGCAGTACAggttgatagtaaaatatcactcggggc          <  1:3136500‑M2/36‑28 (MQ=255)
                         tGCAGTACAggttgatagtaaaatatcactcggggc          >  1:6331631‑M2/1‑9 (MQ=255)
                         tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt          <  1:5264713/36‑1 (MQ=255)
                         ggCAGTACGGGTGGATAGAAATATCGCCTGGGGCtt          <  1:5960743/35‑1 (MQ=37)
                          gCAGTACAggttgatagtaaaatatcactcggggct         <  1:8098224‑M2/36‑29 (MQ=255)
                          gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt         <  1:1761870/36‑1 (MQ=255)
                            aGTACAggttgatagtaaaatatcactcggggcttt       >  1:8154607‑M2/1‑6 (MQ=255)
                            aGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTg       <  1:798936/36‑1 (MQ=255)
                             gTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGt      <  1:243205/36‑1 (MQ=255)
                              tACAggttgatagtaaaatatcactcggggcttttc     >  1:7588337‑M2/1‑4 (MQ=255)
                              tACAggttgatagtaaaatatcactcggggcttttc     <  1:3844061‑M2/36‑33 (MQ=255)
                              tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc     <  1:8008125/36‑1 (MQ=255)
                              tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc     <  1:2655678/36‑1 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    >  1:926362‑M2/1‑3 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    >  1:2354210‑M2/1‑3 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    >  1:6126712‑M2/1‑3 (MQ=255)
                               aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc    <  1:3320240/36‑1 (MQ=255)
                               aCAGGTTGATAGAAATATCGCCTGGGCCTTTTGTcc    >  1:90306/1‑36 (MQ=255)
                               aCAGGTTGATACAAATATCGCCTGGGGCTTTTGTca    <  1:5058007/36‑2 (MQ=255)
                                cAggttgatagtaaaatatcactcggggcttttctc   <  1:4451953‑M2/36‑35 (MQ=255)
                                cAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCa   <  1:1968839/36‑1 (MQ=255)
                                 aggttgatagtaaaatatcactcggggcttttctct  <  1:6641158‑M2/36‑36 (MQ=255)
                                 aggttgatagtaaaatatcactcggggcttttctct  <  1:5017033‑M2/36‑36 (MQ=255)
                                 aggttgatagtaaaatatcactcggggcttttctct  <  1:4237617‑M2/36‑36 (MQ=255)
                                 aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAt  >  1:4583639/1‑36 (MQ=255)
                                 aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAt  >  1:4490730/1‑36 (MQ=255)
                                 |                                   
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAT  >  REL606/2775844‑2775912

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG