Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 452,245 | T→A | 22.2% | Y44F (TAC→TTC) | hha ← | modulator of gene expression, with H‑NS |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 452,245 | 0 | T→A | 22.2% | 6.9 ‑3.8 ‑0.0 | 30 | 131 | hha | modulator of gene expression, with H‑NS |
Reads supporting (aligned to +/- strand): new base (0/7): ref base (12/10): total (13/17) | ||||||||||
Fisher's exact test strand distribution p-value = 2.30e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.27e-01 |
TGGTCAATTCGGCGAGGCGGTGATCTGCGGCTGAGTAAAATACCGCCAGTTCATTATCTGATAA > REL606/452210‑452273
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tGGTCAATTCGGCGAGGCGGTGATCTGCGGGTGAGt > 1:7837554/1‑36 (MQ=255)
tGGTCAATTCGGCGAGGCGGTGATCTGCGGCTGGGt > 1:1723891/1‑36 (MQ=255)
tGGTCAATTCGGCGAGGCGGTGATCTGCGGCTGAGt < 1:977441/36‑1 (MQ=255)
ggTCAATTCGGCGAGGAGGTGATCTGCGGCTGAGTa < 1:6203065/36‑1 (MQ=255)
gTCAATTCGGCGAGGCGGTGGTCTTCGGCTGAGTaa > 1:1611228/1‑36 (MQ=37)
gTCAATTCGGCGAGGCGGTGATCTGCGGCTGGGTaa > 1:1460857/1‑36 (MQ=255)
gTCAATTCGGCGAGGCGGTGATCTGCGGCTGAGTaa < 1:277866/36‑1 (MQ=255)
tCAATTCGGCGAGGCGGTGATCTGCGGCTGAGTaaa < 1:2902853/36‑1 (MQ=255)
tCAATTCGGCGAGGCGGTGATCTGCGGCTGAGTaaa < 1:2180511/36‑1 (MQ=255)
gaTTCGGCGAGGCGGTGATCTGTTGCTGAGTTAAAt < 1:6793475/35‑1 (MQ=25)
aaTTCGGCGAGGCGGTGATCTTCGGCTGAGTAAAAt > 1:7906047/1‑36 (MQ=255)
aaTTCGGCGAGGCGGTGATCTGCGGCTGAGTAAAAt > 1:87898/1‑36 (MQ=255)
aaTTCGGCGAGGCGGTGATCTGCGGCTGAGTAAAAt < 1:1600343/36‑1 (MQ=255)
aaTTCGGCGAGGCGGAGATCTGCGGCTGGGTaaaaa > 1:1677184/1‑35 (MQ=37)
aTTCGGCGAGGCGGTGATCTGCGGCTGGGTaaaaaa > 1:4829957/1‑34 (MQ=37)
ttCGGCGAGGCGGGGATCTGCGGCTGGGTAAAATAc > 1:6590457/1‑36 (MQ=37)
tCGGCGAGGCGGTGATCTGCGGCTGAGTAAAATAcc < 1:2881348/36‑1 (MQ=255)
ggCGAGGCGGTGGTCTGCGGGTGGGGGAAATACCGc > 1:2407319/1‑36 (MQ=16)
ctgggCGGTGATCTGCGGCTGAGTAAAATACCGCCa < 1:6590637/33‑1 (MQ=255)
cGAGGCGGTTATCTGCGGCTGAGAAAAATACCGCCa < 1:3591266/36‑1 (MQ=37)
cGAGGCGGTGATCTTCGGCTGAGTAAAAAACCGCCa > 1:7458784/1‑36 (MQ=37)
cGAGGCGGTGATCTGCGGCTGAGTAAAATACCGCCa < 1:2428633/36‑1 (MQ=255)
aGGCGGTGATCTGCGGCTGAGTAAAATACCGCCAGt > 1:6778726/1‑36 (MQ=255)
ggCGGTGATCTGCGGCTGAGTAAAATACCGCCAGtt > 1:1300181/1‑36 (MQ=255)
ggCGGGGATCTGCGGCTGAGTAAAATACCGCCAGtt < 1:5659600/36‑1 (MQ=255)
ggTGATCGGGGGCTGAGAAAAATACCGCCAGTTCAt < 1:3115094/36‑1 (MQ=25)
taTCTGCGGCTGATAAAAATACCGCCAGTTCATTAt < 1:2394421/35‑1 (MQ=37)
gATCTGCGGCTGAGTAAAATACCGCCAGTTCATTAt > 1:1371469/1‑36 (MQ=255)
aaTCTGCGGATGAAAAAAAAACCGCCAGTTCATTAt < 1:2459851/35‑1 (MQ=16)
aTCTGCGGCTGATAAAAATACCGCCAGTTCATTATc < 1:7341697/36‑1 (MQ=37)
tcggCGGCTGAGAAAAATACCGCCAGTTCATTATCt < 1:249569/33‑1 (MQ=37)
tcggCGGCTGAAAAAAATACCGCCAGTTCATTATCt < 1:5492479/33‑1 (MQ=25)
ggCTGAGTAAAATACCGCCAGTTCATTATCTGATaa > 1:2566503/1‑36 (MQ=255)
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TGGTCAATTCGGCGAGGCGGTGATCTGCGGCTGAGTAAAATACCGCCAGTTCATTATCTGATAA > REL606/452210‑452273
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 37 ≤
ATCG
|