Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,972 | IS150 (–) +3 bp | 100% | intergenic (‑14/‑514) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16972 = | 0 (0.000) | 30 (0.900) | 22/52 | NT | 100% | intergenic (‑14/‑516) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16974 | 0 (0.000) | 23 (0.600) | 20/60 | NT | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
CGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACC.................................. < REL606/17014‑16972
..................................CTATCAACCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < REL606/2775877‑2775844
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT > 1:4429756/1‑36 (MQ=32)
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT < 1:1897642/36‑1 (MQ=32)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT < 1:4716616/36‑1 (MQ=38)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT < 1:4236362/36‑1 (MQ=38)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT < 1:1308760/36‑1 (MQ=38)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT > 1:5348035/1‑36 (MQ=38)
GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA > 1:2491464/1‑36 (MQ=40)
GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA < 1:4786851/36‑1 (MQ=40)
AAGCCCCGAGTGATATTTTACTATCAACCTGTACTG > 1:271247/1‑36 (MQ=255)
GCCCCGAGTGATATTTTACTATCAACCTGTACTGCA > 1:2496934/1‑36 (MQ=255)
GCCCCGAGTGATATTTTACTATCAACCTGTACTGCA > 1:3921496/1‑36 (MQ=255)
CCCCGAGTGATATTTTACTATCAACCTGTACTGCAC < 1:2178390/36‑1 (MQ=255)
CCCCGAGTGATATTTTACTATCAACCTGTACTGCAC > 1:4963619/1‑36 (MQ=255)
CCCCGAGTGATATTTTACTATCAACCTGTACTGCAC < 1:379287/36‑1 (MQ=255)
CCGAGTGATATTTTACTATCAACCTGTACTGCACCC > 1:2480121/1‑36 (MQ=255)
GAGTGATATTTTACTATCAACCTGTACTGCACCCAT > 1:3283782/1‑36 (MQ=255)
GAGTGATATTTTACTATCAACCTGTACTGCACCCAT > 1:3562526/1‑36 (MQ=255)
AGTGATATTTTACTATCAACCTGTACGGCACCCATT > 1:2559927/1‑36 (MQ=255)
GTGATATTTTACTATCAACCTGTACTGCACCCATTT > 1:5216610/1‑36 (MQ=255)
GTGATATTTTACTATCAACCTGTACTGCACCCATTT > 1:4876620/1‑36 (MQ=255)
TGATATTTTACTATCCACCTGTACTGCACCCATTTT < 1:1020695/36‑1 (MQ=255)
TGATATTTTACTATCAACCTGTACTGCACCCATTTT < 1:4602659/36‑1 (MQ=255)
TGATATTTTACTATCAACCTGTACTGCACCCATTTT < 1:4411100/36‑1 (MQ=255)
GATATTTTACTATCAACCTGTACTGCACCCATTTTG > 1:892227/1‑36 (MQ=255)
ATATTTTACTATCAACCTGTACTGCACCCATTTTGT < 1:4990107/36‑1 (MQ=255)
ATATTTTACTATCAACCTGTACTGCACCCATTTTGT > 1:673980/1‑36 (MQ=255)
TATTTTACTATCAACCTGTACTGCACCCATTTTGTT < 1:4720448/36‑1 (MQ=255)
TATTTTACTATCAACCTGTACTGCACCCATTTTGTT > 1:236244/1‑36 (MQ=255)
TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC < 1:1692704/36‑1 (MQ=255)
TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC > 1:5346608/1‑36 (MQ=255)
CGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACC.................................. < REL606/17014‑16972
..................................CTATCAACCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < REL606/2775877‑2775844
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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