Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,616,396 | G→A | 9.9% | G290S (GGC→AGC) | nadR → | nicotinamide‑nucleotide adenylyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,616,396 | 0 | G→A | 9.9% | 7.2 0.0 ‑0.0 | 51 | 868 | nadR | nicotinamide‑nucleotide adenylyltransferase |
Reads supporting (aligned to +/- strand): new base (3/2): ref base (25/20): total (28/23) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.95e-01 |
CATTGCAGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATA > REL606/4616361‑4616430
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cATTGCAGTATTCCGATTACGATAAAATCGCGCTgg < 1:6688738/36‑1 (MQ=255)
ttGCAGTATTCCGATTACGATAAAATCGCGCTGGGc < 1:4278100/36‑1 (MQ=255)
ttGCAGTATTCCGATTACGATAAAATCGCGCTGGGc > 1:4369115/1‑36 (MQ=255)
tGCAGTATTCCGATTACGATAAAATAGCGCTGGGcc > 1:1486014/1‑36 (MQ=255)
gCAGTATTCCGATTACGATAAAATCGCGCTGGGCCa < 1:1648051/36‑1 (MQ=255)
cAGTATTCCGATTACGATAAAATCGCGCTGGGCCAc < 1:5051677/36‑1 (MQ=255)
aGTATTCCGATTACGATAAAATCGCGCTGGGCCACg > 1:4655648/1‑36 (MQ=255)
gTATTCCGATTACGATAAAATCGCGCTGGGCCACGc < 1:6336030/36‑1 (MQ=255)
tATTCCGATTACGCTAAAATCGCGCTGAGCCACGca < 1:7089274/36‑1 (MQ=25)
tATTCCGATTACGATAAAATCGCGCTGAGCCACGca < 1:1419482/36‑1 (MQ=255)
aTTCCGATTACGATAAAATCGCGCTGGGCCACGcac < 1:2108897/36‑1 (MQ=255)
aTTCCGATTACGATAAAATCGCGCTGGGCCACGcac > 1:5980604/1‑36 (MQ=255)
aTTCCGATTACGATAAAATCGCGCTGGGCCACGcac < 1:4867480/36‑1 (MQ=255)
aTTCCGATTACGATAAAATCGCGCTGGGCCACGcac < 1:3454044/36‑1 (MQ=255)
ttCCGATTACGATAAAATCGCGCTGGGCCACGcaca > 1:797262/1‑36 (MQ=255)
tCCGATTACGATAAAATCGCGCTGGGCCACGCACaa < 1:4463556/36‑1 (MQ=255)
cGATTACGATAAAATCGCGCTGGGCCACGCACAATa < 1:863036/36‑1 (MQ=255)
cGATTACGATAAAATCGCGCTGGGCCACGCACAATa < 1:3541531/36‑1 (MQ=255)
gATTACGATAAAATCGCGCTGGGCCACGCACAATAc > 1:7497035/1‑36 (MQ=255)
gATTACGATAAAATCGCGCTGGGCCACGCACAATAc < 1:3031930/36‑1 (MQ=255)
gATTACGATAAAATCGCGCTGGGCCACGCACAATAc < 1:549074/36‑1 (MQ=255)
aTTACGATAAAATCGCGCTGGGCCACGCACAATACa > 1:6293868/1‑36 (MQ=255)
tACGATAAAATCGCGCTGGGCCACGCACAATACAtt > 1:7609552/1‑36 (MQ=255)
aCGATAAAATCGCGCTGGGCCACGCACAATACATTg > 1:4744292/1‑36 (MQ=255)
cGATAAAATCGCGCTGGGCCACGCACAATACATTGa < 1:6187468/36‑1 (MQ=255)
gATAAAATCGCGCTGGGCCACGCACAATACATTGAt > 1:7809857/1‑36 (MQ=255)
gATAAAATCGCGCTGAGCCACGCACAATACATTGAt > 1:4508332/1‑36 (MQ=255)
gATAAAATCGCGCGGGGAAATGCACAATACATTGAt > 1:5017429/1‑36 (MQ=16)
aTAAAATCGCGCTGGGCCACGCACAATACATTGAtt > 1:5001624/1‑36 (MQ=255)
tAAAATCGCGCTGGGCCACGCACAATACATTGAttt < 1:6864459/36‑1 (MQ=255)
tAAAATCGCGCTGGGCCACGCACAATACATTGAttt < 1:4580653/36‑1 (MQ=255)
aaaaTCGCGCTGGGCCACGCACAATACATTGAtttt > 1:6053553/1‑36 (MQ=255)
aaaaTCGCGCTGGGCCACGCACAATACATTGAtttt > 1:5833745/1‑36 (MQ=255)
aaaaTCGCGCTGGGCCACGCACAATACATTGAtttt < 1:3840116/36‑1 (MQ=255)
aaaaTCGCGCTGGGCCACGCACAATACATTGAtttt > 1:1909986/1‑36 (MQ=255)
aaaaTCGCGCTGGGCCAAGCACAATACATTGAtttt > 1:7095555/1‑36 (MQ=255)
aaTCGCGCTGGGCCACGCACAATACATTGATTTTGc > 1:3008891/1‑36 (MQ=255)
tCGCGCTGGGCCACGCACAATACATTGATTTTGCAg < 1:3004346/36‑1 (MQ=255)
cgcgCTGGGCCACGCACAATACATTGATTTTGCAGt < 1:6204465/36‑1 (MQ=255)
tcgcTGTGCCACGCCCAATACATTGATTTTGCAGTg < 1:2356794/35‑1 (MQ=37)
gcgcTGGGCCACGCACAATGCATTGATTTTGCAGTg > 1:2330088/1‑36 (MQ=255)
gcgcTGGGCCACGCACAATACATTGATTTTGCAGTg > 1:5015567/1‑36 (MQ=255)
gcgcTGGGCCACGCACAATACATTGATTTTGCAGTg > 1:7872994/1‑36 (MQ=255)
gcgcTGGGCCACGCACAATACATTGATTTTGCAGTg < 1:3646965/36‑1 (MQ=255)
gcTGGGCCACGCACAATACATTGATTTTGCAGTGaa > 1:3448612/1‑36 (MQ=255)
gcTGGGCCACGCACAATACATTGATTTTGCAGTGaa < 1:2030570/36‑1 (MQ=255)
cTGAGCCACGCACAATACATTGATTTTGCAGTGaaa > 1:3086259/1‑36 (MQ=255)
cTGAGCCACGCACAATACATTGATTTTGCAGTGaaa > 1:3627210/1‑36 (MQ=255)
tGGGCCACGCACAATACATTGATTTTGCAGTGAAat > 1:7217221/1‑36 (MQ=255)
tGGGCCACGCACAATACATTGATTTTGCAGTGAAat > 1:7827371/1‑36 (MQ=255)
tGGGCCACGCACAATACATTGATTTTGCAGTGAAat > 1:3617284/1‑36 (MQ=255)
tGGGCCACGCACAATACATTGATTTTGCAGTGAAat > 1:1480542/1‑36 (MQ=255)
gggCCACGCAAAATACATTGATTTTGCAGTGAAata < 1:4625418/36‑1 (MQ=255)
gggCCAAGCACAATACANNGNNTTTGCAGTGAAata < 1:6994154/36‑1 (MQ=37)
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CATTGCAGTATTCCGATTACGATAAAATCGCGCTGGGCCACGCACAATACATTGATTTTGCAGTGAAATA > REL606/4616361‑4616430
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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