New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 556412 =34 (0.640)7 (0.130) 5/60 NT 18.7% coding (1697/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 1539626 = 27 (0.440)coding (46/2400 nt) dos cAMP phosphodiesterase, heme‑regulated

TAACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCGG  >  REL606/1539591‑1539661
                                   |                                   
taaCACCGCGCCCATCATATTTTGTTCAAGGGCggg                                     <  1:3767641/36‑1 (MQ=255)
 attatcatttccgcatctgcaaaaagagtggcgggg                                    >  1:8158424‑M2/35‑36 (MQ=255)
 attatcatttccgcatctgcaaaaagagtggcgggg                                    >  1:4747847‑M2/35‑36 (MQ=255)
 aaCACCGCGCCCATCATATTTTGTTCAAGGGCgggg                                    >  1:3457508/1‑36 (MQ=255)
 aaCACCGCGCCCATCATATTTTGTTCAAGGGCgggg                                    <  1:3182472/36‑1 (MQ=255)
  ttatcatttccgcatctgcaaaaagagtggcggGGa                                   >  1:1045595‑M2/34‑36 (MQ=255)
  acacCGCGCCCATCATATTTTGTTCAAGGGCGGGGa                                   >  1:5441951/1‑36 (MQ=255)
    acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaaa                                 >  1:1189511/1‑36 (MQ=255)
    acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaaa                                 >  1:5183744/1‑36 (MQ=255)
    acCGCGCCCATCATATTTTGTTCAAGGGCGGGGaaa                                 >  1:502205/1‑36 (MQ=255)
     tcatttccgcatctgcaaaaagagtggcggGGaaaa                                >  1:7205936‑M2/31‑36 (MQ=255)
     ccGCGCCCATCATATTTTGTTCAAGGGCGGGGaaaa                                >  1:2586502/1‑36 (MQ=255)
     ccGCGCCCATCATATTTTGTTCAAGGGCGGGGaaaa                                <  1:1123388/36‑1 (MQ=255)
      cgcgCCCATCATATTTTGTTCAAGGGCGGGGaaaaa                               >  1:5333502/1‑36 (MQ=255)
      cgcgCCCATCATATTTTGTTCAAGGGCGGGGaaaaa                               >  1:5727044/1‑36 (MQ=255)
       atttccgcatctgcaaaaagagtggcggGGaaaaaa                              >  1:5792133‑M2/29‑36 (MQ=255)
        tttccgcatctgcaaaaagagtggcggGGaaaaaaa                             >  1:460327‑M2/28‑36 (MQ=255)
         ttccgcatctgcaaaaagagtggcggggaaaaaaca                            >  1:801073‑M2/27‑34 (MQ=255)
         gcCCATCATATTTTGTTCAAGGTCGGGGAAAAAAAt                            >  1:1775126/1‑36 (MQ=255)
         gcCCATCATATTTTGTTCAAGGGCGGGGAAAAAAAt                            <  1:2530553/36‑1 (MQ=255)
           ccATCATATTTTGTTCAAGGGCGGGGAAAAAAATGc                          <  1:2457798/36‑1 (MQ=255)
            catcatATTTTGTTCAAGGGCGGGGAAAAAAATGcc                         >  1:3609893/1‑36 (MQ=255)
              tcatATTTTGTTCAAGGGTGGGGAAAAAAATGCCAt                       <  1:264266/36‑1 (MQ=255)
              tcatATTTTGTTAAAGGGCGGGGAAAAAAATGCCAt                       <  1:5290897/36‑1 (MQ=255)
                atatTTTGTTCAAGGGCGGGGAAAAAAATGCCATcg                     >  1:757580/1‑36 (MQ=255)
                atatTTTGTTCAAGGGCGGGGAAAAAAATGCCATcg                     >  1:4856763/1‑36 (MQ=255)
                  atTTTGTTCAAGGGCGGGGAAAAAAATGCCATcgtc                   <  1:4914061/36‑3 (MQ=255)
                  atTTTGTTCAAGGGCGGGGAAAAAAATGCCATcggc                   <  1:2545354/36‑1 (MQ=255)
                   ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggcg                  <  1:2236206/36‑1 (MQ=255)
                   ttttGTTCAAGGGCGGGGAAAAAAATGCCATcggcg                  <  1:963746/36‑1 (MQ=255)
                    tttGTTCAAGGGCGGGGAAAAAAATGCCATcggcgg                 >  1:1885832/1‑36 (MQ=255)
                      tGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCa               <  1:6112572/36‑1 (MQ=255)
                      tGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCa               >  1:7207496/1‑36 (MQ=255)
                        ttCAAGGGCGGGGAAAAAAATGCCATCGGCGGCCtt             >  1:4181585/1‑36 (MQ=255)
                        ttCAAGGGCGGGGAAAAAAATGCCATCGGCGGCAtt             >  1:1562862/1‑36 (MQ=255)
                         tCAAGGGCGGGGAAAAAAATGCCATCGGCGGCAttt            >  1:6544368/1‑36 (MQ=255)
                          cAAGGGCGGGGAAAAAAATGCCATCGGCGGCAtttt           <  1:3977147/36‑1 (MQ=255)
                          cAAGGGCGGGGAAAAAAATGCCATCGGCGGCAtttt           >  1:1307291/1‑36 (MQ=255)
                           aaGGGCGGGGAAAAAAATGCCATCGGCGGAATTTTc          >  1:2360461/1‑36 (MQ=255)
                            aGGGCGGGGAAAAAAATGCCATCGGCGGCAatttgc         >  1:2436461/1‑34 (MQ=37)
                            aGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTcc         <  1:5473808/36‑1 (MQ=255)
                              ggcggGGAAAAAAATGCCATCGGCGGCATTTTCCGc       <  1:1529973‑M2/31‑1 (MQ=255)
                               gcggGGAAAAAAATGCCATCGGCGGCATTTTCCGCa      >  1:8013653‑M2/5‑36 (MQ=255)
                                 ggGGAAAAAAATGCCATCGGCGGCATTTTCCGCATc    >  1:4652702‑M2/3‑36 (MQ=255)
                                 ggGGAAAAAAATGCCATCGGCGGCATTTTCCGCATc    >  1:5982825‑M2/3‑36 (MQ=255)
                                  gGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCg   >  1:27282‑M2/2‑36 (MQ=255)
                                  gGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCg   <  1:967809‑M2/35‑1 (MQ=255)
                                   ggAAAAAAATGCCATCGGCGGCATTTTTCGCATccg  >  1:2659090/1‑34 (MQ=37)
                                   ggAAAAAAATGCCATCGGCGGCATTTTCCGCATCgg  >  1:2382545/1‑36 (MQ=255)
                                   |                                   
TAACACCGCGCCCATCATATTTTGTTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTTTCCGCATCGG  >  REL606/1539591‑1539661

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG