Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,882,516 | +A | 5.9% | coding (291/381 nt) | atpI ← | F0F1 ATP synthase subunit I |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,882,516 | 1 | .→A | 5.9% | 2.3 ‑2.5 ‑0.0 | 34 | coding (291/381 nt) | atpI | F0F1 ATP synthase subunit I |
Reads supporting (aligned to +/- strand): new base (0/2): ref base (24/8): total (24/10) | ||||||||||
Fisher's exact test strand distribution p-value = 8.02e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.43e-01 |
CCCACGTAACGATCAGCGGCAAGAATACCGCCTTT.AAAACCGCCAACGCCACCACCAGTAACACCAACA > REL606/3882482‑3882550
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cccACGTAACGATCAGCGGCAAGAATACCGCCTTT.a > 1:2760742/1‑36 (MQ=255)
ccACGTAACGATCAGCGGAAAAAATACCGCCTTT.aa < 1:7747773/36‑1 (MQ=25)
ccACGGAACGATCAGCGGCAAGAATACCGCTTTT.aa > 1:7626149/1‑36 (MQ=37)
cACGTAACGATCAGCGGCAAGAATACCGCCTTT.aaa > 1:732151/1‑36 (MQ=255)
cACGAAACGATCAGCGGCAAGAATACCGCCTTT.aaa < 1:6044408/36‑1 (MQ=255)
cACATAACGATCAGCGGAAAAAATACCGCCTTT.aaa < 1:4704531/36‑1 (MQ=21)
aCGTAACGATCAGCGGCAAGAATACCGCCTTT.aaaa > 1:905778/1‑36 (MQ=255)
aCGTAACGATCAGCGGCAAGAATACCGCCTTT.aaaa > 1:7807538/1‑36 (MQ=255)
aCGTAACGATCAGCGGAAAGAATACCGCCTTT.aaaa < 1:4041259/36‑1 (MQ=255)
gTAACGATCAGCGGCAAGAATACCGCCTTT.AAAAcc > 1:3519421/1‑36 (MQ=255)
tAACGATCAGCGGCAAGAATACCGCCTTT.TAAACCg > 1:410126/1‑36 (MQ=255)
tAACGATCAGCGGCAAGAATACCGCCTTT.AAAACCg > 1:5936630/1‑36 (MQ=255)
aCGATCAGCGGCAAGAATACCGCCTTT.AAAACCgac > 1:6055524/1‑34 (MQ=255)
aCGATCAGCGGCAAGAATACCGCATTT.AAAACCGcc > 1:4745902/1‑36 (MQ=255)
gATCAGCGGCAAGAATACCGCCTTT.AAAACCGCCaa > 1:679569/1‑36 (MQ=255)
gATCAGCGGCAAGAATACCGCCTTT.AAAACCGCCaa > 1:7354081/1‑36 (MQ=255)
aTCAGCGGCAAGAATACCGCCTTT.AAAACCGCCAAc > 1:1430161/1‑36 (MQ=255)
cAGCGGCAAGAATACCGCCTTT.AAAACCGCCAACGc > 1:6601641/1‑36 (MQ=255)
aaGCGGAAAAAAAACCGCCTTT.AAAACCGCCAACGc < 1:5934848/35‑1 (MQ=21)
aGCGGCAAGAATACCGCCTTT.AAAACCGCCAACGcc > 1:4402213/1‑36 (MQ=255)
gCGGCAAGAATACCGCCTTT.AAAACCGCCAACGcca > 1:7291016/1‑36 (MQ=255)
cGGCAAGAATACCGCCTTT.AAAACCGCCAACGccac > 1:1345236/1‑36 (MQ=255)
cGGCAAGAATACCGCCTTT.AAAACCGCCAACGccac > 1:7698994/1‑36 (MQ=255)
cAAGAATACCGCCTTT.AAAACCGCCAACGccaccac > 1:2188488/1‑36 (MQ=255)
acgAATACACCCTTTAAAAACCGCCAACGccaccac < 1:1464115/34‑1 (MQ=16)
aGAATACCGCCTTT.AAAACCGCCAACGccaccacca > 1:251724/1‑36 (MQ=255)
gAATACCGCCTTT.AAAACCGCCAACGCCACCACCAg > 1:5504635/1‑36 (MQ=255)
gAATACCGCCTTT.AAAACCGCCAAAGCCACCACCAg > 1:688496/1‑36 (MQ=255)
aaTACCGCCTTT.AAAACCGCCAACGCCACCACCAGt > 1:2243185/1‑36 (MQ=255)
aTACCGCCTTT.AAAACCGCCAACGCCACCACCAGTa > 1:1822643/1‑36 (MQ=255)
aTACCGCCTTT.AAAACCGCCAACGCCACCACCAGTa > 1:7247880/1‑36 (MQ=255)
aaCCCCCTTA.AAAACCGCCAACGCCACCACCAGTaa < 1:4879329/35‑1 (MQ=25)
aCCGCCTTT.AAAACCGCCAACGCCACCACCAGTAac > 1:7169075/1‑36 (MQ=255)
aCCGACTTT.AAAACCGCCAACGCCACCACCAGTAac > 1:7486878/1‑36 (MQ=255)
cccccTTA.AAAACCGCCAACGCCACCACCAGTAaca < 1:6987352/33‑1 (MQ=37)
ccccTTTAAAAACCGCCAACGCCACCACCAGTAaca < 1:3795606/34‑1 (MQ=25)
ccccTTA.AAAACCGCCAACGCCACCACCAGTAacac < 1:87935/34‑1 (MQ=37)
cGCCTTT.AAAACCGCCAACGCCACCACCAGTAacac > 1:2446645/1‑36 (MQ=255)
cGCCTTA.AAAACCGCCAACGCCACCACCAGTAacac < 1:4764601/36‑1 (MQ=255)
gCCTTT.AAAACCGCCAACGCCACCACCAGTAACAcc > 1:6242087/1‑36 (MQ=255)
cccTTA.AAAACCGCCAACGCCACCACCAGTAACAcc < 1:243683/35‑1 (MQ=255)
ccTTA.AAAACCGCCAACGCCACCACCAGTAACACCa < 1:1711365/36‑1 (MQ=255)
cTTA.AAAACCGCAAACGCCACCACCAGTAACACCaa < 1:6019910/36‑1 (MQ=25)
tat.AAAACCGCCAACTCCACCACCAGTAACACCAAc < 1:5267941/34‑1 (MQ=38)
tt.AAAACCGCCAACGCCACCACCAGTAACACCAACa > 1:797834/1‑36 (MQ=255)
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CCCACGTAACGATCAGCGGCAAGAATACCGCCTTT.AAAACCGCCAACGCCACCACCAGTAACACCAACA > REL606/3882482‑3882550
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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