Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546959–547702 555923–555878 8177–8965 8 [7] [0] 66 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)41 (1.030) 27/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128
                                  |                                   
atcatACACTAAATCAGTAAGTTGGCAGCATCGCCc                                    >  1:489247‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCCCCc                                    >  1:834211‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:5898913‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:2691061‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:5795462‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:3298774‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:2235414‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:2173823‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:505201‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:1752338‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3632515‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3808837‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:1307707‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:5242265‑M2/36‑2 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:3396851‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:3058739‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:3906930‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:262516‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:249326‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:2470487‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGCAAGTTGGCAGCATCACCca                                   <  1:5240436‑M2/36‑3 (MQ=255)
 tcatAAACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:5200930‑M2/36‑3 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:5365345‑M2/36‑5 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg                               <  1:5042855‑M2/36‑7 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg                               <  1:3985948‑M2/36‑7 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              >  1:5208358‑M2/1‑29 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              >  1:5101822‑M2/1‑29 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              <  1:3139012‑M2/36‑8 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCcaaacgcg                             <  1:3627279‑M2/36‑9 (MQ=255)
       acTAAATCAGTAAGATGGCAGCATCACCcaaacgcg                             <  1:2454518‑M2/36‑9 (MQ=255)
          aaaTCAGTAAGTTGTCAGCATCACCcaaacgcgcat                          >  1:5661330‑M2/1‑25 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc                         <  1:785966‑M2/36‑13 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc                         <  1:3994867‑M2/36‑13 (MQ=255)
              cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg                      >  1:1115020‑M2/1‑21 (MQ=255)
              cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg                      >  1:4570926‑M2/1‑21 (MQ=255)
               aGTAAGTTTGCAGCATCACCcaaacgcgcatcaggt                     >  1:5567835‑M2/1‑20 (MQ=255)
               aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt                     <  1:852418‑M2/36‑17 (MQ=255)
               aGGAAGTTGGCAGCATCACCcaaacgcgcatcaggt                     >  1:1028598‑M2/1‑20 (MQ=255)
                 tAAGTTGGCAGCATCTCCcaaacgcgcatcaggtgc                   >  1:3434064‑M2/1‑18 (MQ=255)
                 tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc                   >  1:3912990‑M2/1‑18 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa                 <  1:243389‑M2/36‑21 (MQ=255)
                     ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca               <  1:4667312‑M2/36‑23 (MQ=255)
                     ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca               >  1:919504‑M2/1‑14 (MQ=255)
                      tGGCAGCATCACCcaaacgcgcatcaggtgcaacat              >  1:4839836‑M2/1‑13 (MQ=255)
                      tGGCAGCATCACCcaaacgcgcatcaggtgcaacat              <  1:5240058‑M2/36‑24 (MQ=255)
                       ggCAGCATCACCcaaacgcgcatcaggtgcaacata             <  1:1326017‑M2/36‑25 (MQ=255)
                         cagcaTCACCcaaacgcgcatcaggtgcaacataca           >  1:3581696‑M2/1‑10 (MQ=255)
                         cagcaTCACCcaaacgcgcatcaggtgcaacataca           >  1:817951‑M2/1‑10 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         >  1:1009596‑M2/1‑8 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggggcaacatacatt         >  1:2921671‑M2/1‑8 (MQ=255)
                            caTCACCcaaacgcgcatcaggtgcaacatacatta        >  1:191197‑M2/1‑7 (MQ=255)
                             aTCACCcaaacgcgcatcaggtgcaacatacattaa       >  1:4013049‑M2/1‑6 (MQ=255)
                             aTCACCcaaacgcgcatcaggtgcaacatacattaa       >  1:926487‑M2/1‑6 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      <  1:3058747‑M2/36‑32 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      <  1:2538789‑M2/36‑32 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     <  1:473315‑M2/36‑33 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     >  1:4008739‑M2/1‑4 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     >  1:813466‑M2/1‑4 (MQ=255)
                                aCCcaaacgcgcatcaggtgcaacatacattaataa    <  1:3155749‑M2/36‑34 (MQ=255)
                                aCCcaaacgcgcatcaggtgcaacatacattaataa    <  1:726795‑M2/36‑34 (MQ=255)
                                aCCcaaacgcgcatcaggtgaaacatacattaataa    <  1:1385163‑M2/36‑34 (MQ=255)
                                 cccaaacgcgcatcaggtgcaacatacattaataaa   >  1:94290‑M2/1‑2 (MQ=255)
                                  ccaaacgcgcatcaggtgcaacatacattaataaat  <  1:2102470‑M2/36‑36 (MQ=255)
                                  ccaaacgcgaatcaggtgcaacatacattaataaat  >  1:1925371‑M2/1‑1 (MQ=255)
                                  |                                   
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG