Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,398,1000C→T100.0% 3.5 31135tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/1):  total (2/1)

GCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGA  >  REL606/3398066‑3398135
                                  |                                   
gCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCa                                    <  1:2340458/36‑1 (MQ=38)
        gCCCGCGCCAACGGCACGGCCGCCTGTACGGAGTgg                            >  1:506432/1‑35 (MQ=0)
             cgcCAACGGTACGGCAGCCGTTAAGGATTGTGGAAc                       >  1:4328935/1‑36 (MQ=0)
                                  cACGGATTGCGAAACGCAGAACGTCGTCCCGcgcgc  >  1:2288234/1‑35 (MQ=1)
                                  |                                   
GCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGA  >  REL606/3398066‑3398135

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 10 ≤  ATCG  < 24 ≤  ATCG  < 37 ≤  ATCG