breseq  version 0.24  revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,660,9970G→T15.7% 8.8 ‑13.7 0.081480tyrAfused chorismate mutase T/prephenate dehydrogenase
*REL6063,250,9111.→C 3.8% 8.2 0.0 ‑0.680coding (338/2673 nt)infBtranslation initiation factor IF‑2
*REL6063,344,2730A→G 6.7% 5.5 ‑2.9 ‑0.2741350acrFmultidrug efflux system protein
*REL6064,383,4600G→T14.0% 5.4 ‑10.3 0.079619purAadenylosuccinate synthetase
*REL6063,248,9570A→T94.1% 5.3 ‑0.5 ‑0.1682292infBtranslation initiation factor IF‑2
*REL6063,842,6510A→T 9.1% 5.1 ‑4.5 ‑0.07532dnaNDNA polymerase III subunit beta
*REL6061,450,5161.→C 4.3% 4.5 ‑0.7 ‑0.147coding (274/1293 nt)ynbDpredicted phosphatase, inner membrane protein
*REL6061,450,5181.→A 4.3% 4.2 ‑0.7 ‑0.047coding (276/1293 nt)ynbDpredicted phosphatase, inner membrane protein
*REL6063,304,2750C→A13.2% 4.2 ‑9.5 0.086400sspBClpXP protease specificity‑enhancing factor
*REL6061,733,6490A→C 3.9% 3.5 ‑0.5 ‑0.1102685pykFpyruvate kinase
*REL6063,893,5501.→G 2.9% 3.4 0.0 ‑0.068intergenic (+5/‑51)kup/insJ‑5potassium transporter/IS150 hypothetical protein
*REL60666,6110G→T14.3% 3.1 ‑20.6 0.0801974polBDNA polymerase II
*REL6063,398,4410A→G100.0% 2.7 1794tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6063,398,4380A→G100.0% 2.6 1797tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6063,398,4311.→G100.0% 2.5 1coding (804/1185 nt)tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6063,398,4350T→G100.0% 2.3 1800tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6063,584,6040T→A 7.0% 2.1 ‑6.4 ‑0.070431yhiFpredicted DNA‑binding ranscriptional regulator
*REL6063,398,4500A→C100.0% 1.7 1785tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL606569,2330A→G100.0% 1.6 1704yhhIpredicted transposase
*REL6063,944,4530C→T100.0% 1.6 2noncoding (48/87 nt)leuTtRNA‑Leu
*REL6062,241,5870A→G 7.5% 1.4 ‑5.3 ‑0.067813ccmHheme lyase, CcmH subunit
*REL606569,3310T→A100.0% 1.1 1606yhhIpredicted transposase
*REL606569,3220G→T100.0% 1.0 1615yhhIpredicted transposase
*REL6063,398,4330C→T100.0% 1.0 1802tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL606569,3370C→A100.0% 0.9 1600yhhIpredicted transposase
*REL606569,3230G→T100.0% 0.8 1614yhhIpredicted transposase
*REL606569,2300C→A100.0% 0.7 1707yhhIpredicted transposase
*REL6061,274,3300G→T 9.0% 0.7 ‑5.3 ‑0.069256ychPpredicted invasin
*REL6061,032,3991.→G 3.4% 0.6 ‑2.9 0.059coding (398/549 nt)ymbAhypothetical protein
*REL606569,3350C→A100.0% 0.5 1602yhhIpredicted transposase
*REL6063,807,0330T→. 2.9% 0.5 ‑1.6 ‑0.070coding (67/1392 nt)uhpTsugar phosphate antiporter
*REL606569,3340C→A100.0% 0.3 1603yhhIpredicted transposase
*REL6063,293,8770A→T 8.7% 0.3 ‑7.4 0.0674011gltBglutamate synthase, large subunit
*REL606573,0750C→A100.0% 0.2 3414ECB_00530conserved hypothetical protein
*REL606573,2020T→G100.0% 0.2 6287ECB_00530conserved hypothetical protein
*REL6062,650,1440A→C100.0% 0.2 3noncoding (534/2906 nt)rrlG23S ribosomal RNA
*REL6063,398,6110G→T100.0% 0.2 4624tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6064,590,3600T→C 6.8% 0.2 ‑1.6 ‑0.079392dnaTprimosomal protein I
*REL606553,5560C→A100.0% 0.1 11716ECB_00512putative tail component of prophage
*REL606553,5610T→C100.0% 0.1 11721ECB_00512putative tail component of prophage
*REL6063,603,6880G→C 2.9% 0.1 0.0 ‑0.568835yhjDconserved inner membrane protein
*REL6063,928,5130T→A 6.0% 0.1 ‑5.6 0.071297rhotranscription termination factor Rho