New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286705 =35 (0.710)8 (0.160) 6/56 NT 25.0% intergenic (+29/‑154) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 1802338 = 13 (0.210)intergenic (‑136/+67) ydjR/spy hypothetical protein/envelope stress induced periplasmic protein

GACAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCCGA...................................  <  REL606/1286746‑1286705
...................................CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAA  >  REL606/1802338‑1802372
                                                                             
                        aaAAAAAAACCCCGCCGATCCTGTCCACCGCATTAC                   <  1:4053813/34‑1 (MQ=17)
                          AAAAAATCCCCGCCGATCCTGTCCACCGCATTACTG                 <  1:3613825/36‑1 (MQ=12)
                           AAAAAACCCCGCCGATCCTGTCCACCGCATTACTGC                <  1:6922917/36‑1 (MQ=1)
                           AAAAAAACCCGCCGATCCTGTCCACCGCATTACTGC                <  1:5226555/36‑1 (MQ=0)
                             AAACCCCCGCCGATCCTGTCCACCGCATTACTGCAA              <  1:5839144/36‑1 (MQ=0)
                                ACCCCGCCGATCCTGTCCACCGCATTACTGCAAGGT           <  1:5380101/36‑1 (MQ=1)
                                 CCCCGCCGATCCTGTCCACCGCATTACTGCAAGGTA          <  1:3747616/36‑1 (MQ=1)
                                  CCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAG         <  1:8307634/36‑1 (MQ=1)
                                                                             
GACAACTCACCCCGCACCGTGCCCATAAAAAAACCCCGCCGA...................................  <  REL606/1286746‑1286705
...................................CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAA  >  REL606/1802338‑1802372

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 21 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG