Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,383,460 | 0 | G→T | 14.0% | 5.4 ‑10.3 0.0 | 79 | 619 | purA | adenylosuccinate synthetase |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (13/1): ref base (21/44): total (34/45) | ||||||||||
Fisher's exact test strand distribution p-value = 3.47e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC > REL606/4383426‑4383495
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cGACATCCTGACTTCTATGGTGGTTGACGTTTCTGa > 1:3457030/1‑36 (MQ=255)
gccATCCTTACTTCTATGGTGGTGGACGTTTCTGAc < 1:5729076/34‑1 (MQ=25)
gACATCCTGACTTCTATGGTGGTTTACGTTTCTTAc > 1:1698343/1‑36 (MQ=37)
gACATCCTGACTTCTATGGTGGTTGACGTTTCTGAc < 1:6146197/36‑1 (MQ=255)
gACATCCTGACTTCTATGGTGGTTGACGTTTCTGAc < 1:675494/36‑1 (MQ=255)
aCATCCTGACTTCTATGGTGGTTGACGTTTCTGAcc < 1:7045377/36‑1 (MQ=255)
aCATCCTGACTTCTATGGTGGTTGACGTTTCTGAcc < 1:1609153/36‑1 (MQ=255)
cATCCTGACTTCTATGGTGGTTGACGTTTCTTACCt > 1:2751130/1‑36 (MQ=255)
cATCCTGACTTCTATGGTGGTTGACGTTTCTGACCt < 1:3620034/36‑1 (MQ=255)
cATCCTGACTTCTATGGTGGTTGACGTTTCTGACCt < 1:7181994/36‑1 (MQ=255)
aTCCTGACTTCTATGTTGGTTAACGTTTCTTACCTg > 1:7099339/1‑36 (MQ=25)
aTCCTGACTTCTATGGTGGTTGACGTTTCTTACCtt > 1:5201690/1‑35 (MQ=255)
aTCCTGACTTCTATGGTGGTTGACGTTTCTGACCTg < 1:2585380/36‑1 (MQ=255)
aTCCTGACTTCTATGGTGGTTGACGTTTCTGACCTg < 1:2353408/36‑1 (MQ=255)
tCCTGTCTTCTATGGCGATTGACGTTTCTGACCTGc < 1:4141843/36‑1 (MQ=37)
tCCTGACTTCTATGGTGTTTGACGTTTCTGACCTGc < 1:6813200/36‑1 (MQ=255)
tCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGc < 1:4560266/36‑1 (MQ=255)
ccTGACTTCTATGGTGGTTTACGTTTTTGACCTTCt > 1:4769278/1‑36 (MQ=25)
ccTGACTTCTATGGTGGTTGACGTTTCTTACCTGCt > 1:1795988/1‑36 (MQ=255)
ccTGACTTCTATGGTGGTTGACGTTTCTGACCTGCt < 1:364229/36‑1 (MQ=255)
ccTGACTTCTATGGTGGTTGACGTTTCTGACCTGCt > 1:1486418/1‑36 (MQ=255)
tGACTTCTATGGTGGTTTACGTTTCTTACCTTCTCg > 1:3379785/1‑36 (MQ=25)
tGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCg < 1:5355322/36‑1 (MQ=255)
tGACTTCTATGGCGGTTCGCATTTCTTTCCAGCTCg > 1:6761408/1‑36 (MQ=2)
gACTTCTATGGTGGTTGACGTTTCTTACCTGCTCGa > 1:2088116/1‑36 (MQ=255)
aCTTCTATGGTGGTTGATGTTTCTTACCTGCTCGAc > 1:3244126/1‑36 (MQ=25)
aCTTCTATGGTGGTTGACGTTTCTTACCTGCTCGAc > 1:101316/1‑36 (MQ=255)
aCTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAc < 1:7673674/36‑1 (MQ=255)
aCTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAc > 1:387483/1‑36 (MQ=255)
cTTCTATGGTTGTTGACGTTTCTGACCTGCTCGAcc < 1:3573596/36‑1 (MQ=255)
cTTCTATGGTGTTTTACGTTTCTGCCCTGCTCGAcc < 1:3267544/36‑1 (MQ=25)
cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc < 1:5713877/36‑1 (MQ=255)
cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc < 1:7665601/36‑1 (MQ=255)
cTTCTATAGTGGTTGACGTTTCTGACCTGCTCGAcc < 1:1387872/36‑1 (MQ=255)
ttCTATGGTGGTTGACGTTTCTGACCTGCTCGACCa < 1:4346709/36‑1 (MQ=255)
tCTATGGTTGTTGACGTTTCTGACCTGCTCGACCAg < 1:7634777/36‑1 (MQ=255)
tCTATGGTGGTTGGCGTTTCTTAGCTGCTCTAGCAg < 1:7169921/36‑1 (MQ=16)
tCTATGGTGGTTGACGTTTCTTACCTTCTCGACCAg > 1:1786464/1‑36 (MQ=25)
tCTATGGTGGTTGACGTTTCTTACCTGCTCGACCAg > 1:3172156/1‑36 (MQ=255)
tCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAg < 1:3280531/36‑1 (MQ=255)
tATGGTGGTTGACGTTTCTGACCTGCTCGACCAGgc < 1:1545259/36‑1 (MQ=255)
aTGGTGGTTGACGTTTCTTACCTGCTCGACCAGgcg > 1:3630084/1‑36 (MQ=255)
aTGGTGGTTGACGTTTCTGACCTGCTCGACCAGgcg < 1:7535745/36‑1 (MQ=255)
tggtggTTGACGTTTCTGACCTGCTCGACCAGgcgc < 1:7310679/36‑1 (MQ=255)
ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg > 1:4072174/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTTCTCGACCAGGCGCGt > 1:93401/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt > 1:465118/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt > 1:1929643/1‑36 (MQ=255)
tggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTc < 1:4737717/36‑1 (MQ=255)
tggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTc > 1:1636983/1‑36 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa > 1:5546710/1‑36 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa > 1:2255932/1‑36 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa < 1:6177420/36‑1 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa > 1:5975698/1‑36 (MQ=255)
ggtTGACGGTTCTGACCTGCTCGTCCAGGCGCGTCa < 1:7403988/36‑1 (MQ=38)
ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc > 1:7385455/1‑36 (MQ=255)
ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc < 1:7052521/36‑1 (MQ=255)
ggcGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:2461343/34‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCTTCAGCGt < 1:1042669/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:5776885/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:581231/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:3907685/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:1659633/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt > 1:2087210/1‑36 (MQ=255)
aaCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:1050079/35‑1 (MQ=255)
aCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTg > 1:5724270/1‑36 (MQ=255)
aCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTg < 1:201497/36‑1 (MQ=255)
aCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTg > 1:5618469/1‑36 (MQ=255)
cGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTgg < 1:4354926/36‑1 (MQ=255)
cGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTgg < 1:4350553/36‑1 (MQ=255)
gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc > 1:1291346/1‑36 (MQ=255)
tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg < 1:6344860/36‑1 (MQ=255)
ttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGa > 1:346225/1‑36 (MQ=255)
ttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGa > 1:2565946/1‑36 (MQ=255)
tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt < 1:4044485/36‑1 (MQ=255)
cTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAtt > 1:1721131/1‑36 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt < 1:2638413/36‑1 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt < 1:1205839/36‑1 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt > 1:5834788/1‑36 (MQ=255)
gACCTGCTCGGCCAGGCGCGTCAGCGTGGCGATTTc < 1:5320052/36‑1 (MQ=255)
gACCTGCTCGACCAGGCGCGTCAGCGTGGCGCTTTc > 1:2414827/1‑36 (MQ=255)
gACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTc < 1:6552515/36‑1 (MQ=255)
gACCTGCTCGACCAGGCGAGTCAGCGTGGCGATTTc > 1:108733/1‑36 (MQ=255)
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CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC > REL606/4383426‑4383495
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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