Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,594,508 | T→A | 17.0% | intergenic (+41/+7) | yphA → / ← yphB | predicted inner membrane protein/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,594,508 | 0 | T→A | 17.0% | 2.5 ‑3.7 0.0 | 23 | intergenic (+41/+7) | yphA/yphB | predicted inner membrane protein/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (13/6): total (13/10) | ||||||||||
Fisher's exact test strand distribution p-value = 2.37e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATTTAATAAATTACAGCCACTCTACCCGCAACGACATCT > REL606/2594473‑2594543
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aTGCCGGATGCGGCGTGAACGCCTTATCCGGCAttt > 1:2012612/1‑36 (MQ=35)
aTGCCGGATGCGGCGTGAACGCCTTATCCGGCAttt < 1:3460983/36‑1 (MQ=35)
gCCGGATGCGGCGTGAACGCCTTATCCGGCATTtaa > 1:1097544/1‑36 (MQ=40)
ccGGATGCGGCGTGAGCGCCTTATCCGGCATTtaat < 1:4335797/36‑1 (MQ=255)
ccGGATGCGGCGTGAACGCCTTATCCGGCATTtaat < 1:7903699/36‑1 (MQ=255)
ccGGATGCGGCGTGAACGCCTTATCCGGCATTtaat < 1:3979860/36‑1 (MQ=255)
ccGGATGCGGCGTGAAAGCCTTATCCGGCATTtaat > 1:4637177/1‑36 (MQ=255)
cGGATGCGGCGTGAACGCCTTATCCGGCATTtaata < 1:7289237/36‑1 (MQ=255)
cGGATGCGGCGTGAACGCCTTATCCGGCATTtaata < 1:2843212/36‑1 (MQ=255)
aggATGCGGCGTGAACGCCTTATCCGGCATTtaata < 1:3326323/35‑1 (MQ=255)
ggATGCGGCGTGAACGCCTTATCCGGCATTtaataa < 1:8365591/36‑1 (MQ=255)
ggATGCGGCGTGAACGCCTTATCCGGCATTtaataa > 1:6070593/1‑36 (MQ=255)
ggATGCGGCGTGAACGCCTTATCCGGCATTtaataa > 1:4484193/1‑36 (MQ=255)
gATGCGGCGTGAACGCCTTATCCGGCATTTAATaaa < 1:639075/36‑1 (MQ=255)
aTGCGGCGTGAACGCCTTATCCGGCATTTAATAAAt > 1:442135/1‑36 (MQ=255)
aTGCGGCGTGAACGCCTTATCCGGCATTTAATAAAt < 1:3383299/36‑1 (MQ=255)
gcggcgTGAACGCCTTATCCGGCATTTAATAAATTa > 1:3658003/1‑36 (MQ=255)
gcggcgTGAACGCCTTATCCGGCATTTAATAAATTa > 1:5554971/1‑36 (MQ=255)
gcggcaTGAACTCCTTATCCTGCATTTAATAAATTa < 1:2567976/36‑1 (MQ=21)
cggcgTGAACGCCTTATCCGGCATTTAATAAATTAc > 1:4456705/1‑36 (MQ=255)
ggcgTGAACGCCTTATCCGGCATTTAATAAATTACa < 1:379462/36‑1 (MQ=255)
gcgTGAACGCCTTATCCGGCATTTAATAAATTACAg < 1:3602584/36‑1 (MQ=255)
gcgTGAACGCCTTATCCGGCATTTAATAAATTACAg > 1:5126434/1‑36 (MQ=255)
tGAACGCCTTATCCGGCATTTAATAAATTACAGCCa < 1:7958338/36‑1 (MQ=255)
gAACGCCTTATCCGGCATTTAATAAATTACAGCCAc > 1:7326775/1‑36 (MQ=255)
gCCTTATCCGGCATTTAATAAATTACAGCCACTCTa > 1:4397600/1‑36 (MQ=255)
ccTTATCCGGCATTTAATAAATTACAGCCACTCTAc > 1:77131/1‑36 (MQ=255)
ccTTATCCGGCATTTAATAAATTACAGCCACTCTAc > 1:7451789/1‑36 (MQ=255)
ttATCCGGCATTTAATAAATTACAGCCACTCTAccc > 1:4631942/1‑36 (MQ=255)
cccGGAATTAAAAAAATCACAGCCACTCTACCCGCa < 1:3755998/35‑1 (MQ=16)
ccGGCATTTAATAAATTACAGCCACTCTACCCGCaa > 1:8457670/1‑36 (MQ=255)
gacATTAAAAAAACCACAGCCACTCTACCCGCAACg < 1:1482577/34‑1 (MQ=12)
gCATTTAATAAATTACAGCCACTCTACCCGCAACGa > 1:6757819/1‑36 (MQ=255)
cATTTAATAAATTACAGCCACTCTACCCGCAACGAc > 1:5761884/1‑36 (MQ=255)
cATTAAAAAAATCCCAGCCACTCTACCCGCAACGAc < 1:8349450/36‑1 (MQ=16)
aaTTAAAAAAATACCAGCCACTCTACCCGCAACGAc < 1:2535132/35‑1 (MQ=16)
tttAATAAATTACAGCCACTCTACCCGCAACGACAt > 1:2448036/1‑36 (MQ=255)
tttAATAAATTACAGCCACTCTACCCGCAACGACAt > 1:1370865/1‑36 (MQ=255)
tttAATAAATTACAGCCACTCTACCCGCAACGACAt > 1:3328692/1‑36 (MQ=255)
ttAATAAATTACAGCCACTCTACCCTCAACGACAtc > 1:2471031/1‑36 (MQ=255)
ttAATAAATTACAGCCACTCTACCCGCAACGACAtc > 1:214709/1‑36 (MQ=255)
ttAATAAATTACAGCCACTCTACCCGCAACGACAtc > 1:1972810/1‑36 (MQ=255)
ttAATAAATTACAGCCACTCTACCCGCAACGACAtc > 1:7532351/1‑36 (MQ=255)
ttAATAAATTACAGCCACTCTACCCGCAACGACAtc > 1:4509504/1‑36 (MQ=255)
taataaATTACAGCCACTCTACCCGCAACGACAtct > 1:7807623/1‑36 (MQ=255)
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ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATTTAATAAATTACAGCCACTCTACCCGCAACGACATCT > REL606/2594473‑2594543
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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