Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,029,577 | C→A | 18.2% | L13F (TTG→TTT) | ugd ← | UDP‑glucose 6‑dehydrogenase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,029,577 | 0 | C→A | 18.2% | 2.4 ‑3.2 0.0 | 37 | 39 | ugd | UDP‑glucose 6‑dehydrogenase |
Reads supporting (aligned to +/- strand): new base (1/7): ref base (17/12): total (18/19) | ||||||||||
Fisher's exact test strand distribution p-value = 4.22e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACCTCATGATTTTGTGCGATTAGAAGCCCGTTTGACAAGCCGACATAGCCAGTACCGGAAATGGTGATT > REL606/2029542‑2029610
|
aCCTCATGATTTTGTGCGATTAGAAGCCCGTTTGAc < 1:1497253/36‑1 (MQ=255)
ccTCAGGATTTTGTGCGATTAGAAGCCCGTTTGACa < 1:2904400/36‑1 (MQ=255)
cTCATGATTTTGTGCGATTAGAAGCCCGTTTGACaa < 1:249545/36‑1 (MQ=255)
cATGATTTTGTGCGATTAGAAGCCCGTTTGACAAGc < 1:4957413/36‑1 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc > 1:5724439/1‑36 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc > 1:5965981/1‑36 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc > 1:2276099/1‑36 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc < 1:726865/36‑1 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc > 1:6444873/1‑36 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc < 1:6697501/36‑1 (MQ=255)
aTGATTTTGTGCGATTAGAAGCCCGTTTGACAAGcc < 1:4539244/36‑1 (MQ=255)
tGATTTTGTGCGATTAGAAGCCCGTTTGACAAGCCg > 1:4483380/1‑36 (MQ=255)
gATTTTGTGCGATTAGAAGCCCGTTTGACAAGCCGa > 1:4032192/1‑36 (MQ=255)
aTTTTGTGCGATTAGAAGCCCGTTTGACAAGCCGAc < 1:576194/36‑1 (MQ=255)
ttttGTGAGATTAGAAGCCCGTTTGACAAGCCGACa < 1:795770/36‑1 (MQ=255)
tttGTGCGATTAGAAGCCCGTTGGACAAGCCGACAt < 1:4041213/36‑1 (MQ=255)
ttGTGCGATTAGAAGCCCGTTTGAAAAGCCGACATa > 1:3137862/1‑36 (MQ=255)
tgtgCGATTAGAAGCCCGTTTGACAAGCCGACATAg > 1:1433358/1‑36 (MQ=255)
gtgCGATTAGAAGCCCGTTTGACAAGCCGACATAGc < 1:6471339/36‑1 (MQ=255)
gtgCGATTAGAAGCCCGTTTGACAAGCCGACATAGc < 1:639665/36‑1 (MQ=255)
gtgCGATTAGAAGCCCGTTTGACAAGCCGACATAGc < 1:5593071/36‑1 (MQ=255)
gCGATTAGAAGCCCGTTTGACAAGCCGACATAGCCa > 1:1059807/1‑36 (MQ=255)
ttAGAAGCCCTTTTGAAAAGCCGACATAGCCAGTAc < 1:511726/36‑1 (MQ=37)
tAGAAGCCCGTTTGACAAGTCGACATAGCCAGTAcc > 1:2690501/1‑36 (MQ=255)
tAGAAGCCCGTTTGACAAACCGACATAGCCAGTAcc > 1:4172471/1‑36 (MQ=255)
tAGAAGCCCGTTTGAAAAGCCGACATAGCCAGTAcc < 1:7399829/36‑1 (MQ=255)
aGAAGCCCGTTTGACAAGCCGACATAGCCAGTACCg > 1:5116327/1‑36 (MQ=255)
aGAAGCCCGTTTGACAAGCCGACATAGCCAGTACCg > 1:1393433/1‑36 (MQ=255)
aaccccTTTAGAAAAGCCGACATAGCCAGTACCGGa < 1:6819663/33‑1 (MQ=16)
aaGCCCTTTTGAAAAGCCGAAATAGCCAGTACCGGa < 1:879354/36‑1 (MQ=25)
aGCCCGTTTGAAAAGCCGACATAGCCAGTACCGGaa < 1:3608563/36‑1 (MQ=255)
ccccTTTTAAAAAGCAGACATAGCCAGTACCGGaaa < 1:1803383/35‑1 (MQ=12)
gTTTGACAAGCCGACATAGCCAGTACCGGAAATGGt > 1:5581791/1‑36 (MQ=255)
gTTTGACAAGCCGACATAGCCAGTACCGGAAATGGt > 1:67638/1‑36 (MQ=255)
tttGACAAGCCGATATAGCCAGTACCGGAAATGGTg > 1:4381303/1‑36 (MQ=255)
tGACAAGCCGACATAGCCAGTACCGGAAATGGTGAt > 1:525500/1‑36 (MQ=255)
tGAAAAGCCGAAATAGCCAGTACCGGAAATGGTGAt < 1:2277532/36‑1 (MQ=25)
gACAAGCCGACATAGCCAGTACCGGAAATGGTGAtt > 1:5502268/1‑36 (MQ=255)
|
ACCTCATGATTTTGTGCGATTAGAAGCCCGTTTGACAAGCCGACATAGCCAGTACCGGAAATGGTGATT > REL606/2029542‑2029610
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|