New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 84006436 (0.640)6 (0.110) 5/64 NT 14.1% coding (566/747 nt) glnH glutamine ABC transporter periplasmic protein
?REL606 2842326 = 37 (0.600)intergenic (+24/+50) metV/amiC tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase

AGTCACCTACCGCTTTGAACTGACCGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGC  >  REL606/840029‑840099
                                   |                                   
agTCACCTACCGCTTTGAACTGACCGTTACcggcgg                                     >  1:7078915/1‑36 (MQ=255)
agTCACCTACCGCTTTGAACTGACCGTTACcggcgg                                     >  1:6892428/1‑36 (MQ=255)
agTCACCTACCGCTTTGAACTGACCGTTACcggcgg                                     >  1:6473385/1‑36 (MQ=255)
 gTCACCTACCGCTTTGAACTGACCGTTACcggcggc                                    >  1:7334465/1‑35 (MQ=255)
 gTCACCTACCGCTTTGAACTGACCGTTACCGGCGGg                                    >  1:2541769‑M1/1‑35 (MQ=255)
  tCACCTACCGCTTTGAGCTGACCGTTACCGGCGGtt                                   <  1:6780353/36‑1 (MQ=255)
  tCACCTACCGCTTTGAACTGACCGTTACCGGCGGgg                                   >  1:3472688‑M1/1‑34 (MQ=255)
   cACCTACCGCTTTGAACTGACCGTTACCGGCGGggt                                  >  1:5994964‑M1/1‑33 (MQ=255)
    aCCTACCGCTTTGAACTGACCGTTACCGGCGGtttt                                 <  1:3888680/36‑1 (MQ=255)
    aCCTACCGCTTTGAACTGACCGTTACCGGCGGtgtt                                 >  1:7572448/1‑36 (MQ=255)
    aCCTACCGCTTTGAACTGACCGTTACCGGCGGggtt                                 >  1:999222‑M1/1‑32 (MQ=255)
     ccTACCGCTTTGAACTGACCGTTACCGGCGGTTTtg                                <  1:5075968/36‑1 (MQ=255)
       tACCGCTTTGAACTGACCGTTCCCGGCGGTTTtgat                              <  1:2876521/36‑1 (MQ=255)
       tACCGCTTTGAACTGACCGTTACCGGCGGggttttt                              >  1:1118965‑M1/1‑29 (MQ=255)
       tACCGCTTTGAACTGACCGTTACCGGCGGTTTtgat                              <  1:3210565/36‑1 (MQ=255)
       tACCGCCTTGAACTGACCGTTCCCGGCGGTTTtgat                              <  1:6051285/36‑1 (MQ=37)
        aCCGCTTTGAACTGACCGTTACCGGCGGTTTtgatg                             <  1:6542728/36‑1 (MQ=255)
         ccGCTTTGAACTGACCGTTACCGGCGGTTTtgatga                            <  1:2143227/36‑1 (MQ=255)
          cGCTTTGAACTGACCGTTACCGGCGGgttttgtttt                           >  1:4475910‑M1/1‑26 (MQ=255)
          cGCTTTGAACTGACCGTTACCGGCGGggtttttttt                           >  1:3018073‑M1/1‑26 (MQ=255)
          cGCTTTGAACTGACCGTTACCGGCGGTTTTGATGaa                           <  1:5585429/36‑1 (MQ=255)
           gCTTTGAACTGACCGTTACCGGCGGTTTTGATGAAg                          <  1:2326586/36‑1 (MQ=255)
             tttGAACTGACCGTTACCGGCGGgtttttttttgtt                        >  1:4175816‑M1/1‑23 (MQ=255)
             tttGAACTGACCGTTACCGGCGGTTTTGATGAAGTa                        <  1:5925081/36‑1 (MQ=255)
              ttGAACTGACCGTTACCGGCGGgtttttttttgttt                       >  1:7284419‑M1/1‑22 (MQ=255)
                  aCTGACCGTTACCGGCGGTTTTGATGAAGTACAGaa                   <  1:3825408/36‑1 (MQ=255)
                   cTGACCGTTACCGGCGGTTTTGATGAAGTACAGAAt                  <  1:1420274/36‑1 (MQ=255)
                    tGACCGTTACCGGCGGTTTTGATGAAGTACAGAATg                 <  1:7226538/36‑1 (MQ=255)
                     gACCGTTACCGGCGGTTTTGATGAAGTACAGAATGt                <  1:7155427/36‑1 (MQ=255)
                        cGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTg             <  1:143620/36‑1 (MQ=255)
                         gTTACCGGCGGTTTTGATGAAGTACAGAATGTTTgg            <  1:5771129/36‑1 (MQ=255)
                           tACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCg          <  1:7380037/36‑1 (MQ=255)
                           tACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCg          <  1:2413483/36‑1 (MQ=255)
                             ccGGCGGTTTTGATGAGGTACAGAATGTTTGGCGTa        <  1:3554625/36‑1 (MQ=255)
                             ccGGCGGTTTTGATGAAGTACAGAATGTTTGGCGTa        <  1:2562904/36‑1 (MQ=255)
                              cggcggTTTTGATGAAGTACAGAATGTTTGGCGTAt       <  1:3635882/36‑1 (MQ=255)
                              cggcggTTTTGATGAAGTACAGAATGTTTGGCGTAt       <  1:8022128/36‑1 (MQ=255)
                               ggcggTTTTGATGAAGTACAGAATGTTTGTCGTATc      >  1:2392773/1‑36 (MQ=255)
                                gcggTTTTGATGAAGTACAGAATGTTTGGCGTATCg     >  1:6072991/1‑36 (MQ=255)
                                gcggTTTTGATGAAGTACAGAATGTTTGGCGTATCg     >  1:7688186/1‑36 (MQ=255)
                                gcggTTTTGATGAAGTACAGAATGTTTGGCGTATCg     <  1:240843/36‑1 (MQ=255)
                                gcggTTTTGATGAAGTACAGAATGTTTGGCGTATCg     <  1:4801881/36‑1 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    <  1:2012751/36‑1 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    <  1:4919057/36‑1 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    <  1:1422781/36‑1 (MQ=255)
                                  ggTTTTGATGAAGTACAGAATGTTTGGCGTATCGTg   <  1:3176843/36‑1 (MQ=255)
                                  ggTTTTGATGAAGTACAGAACTTTTGGCGGATCgcg   >  1:4312013/1‑34 (MQ=21)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  <  1:1691549/36‑1 (MQ=255)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  <  1:6569419/36‑1 (MQ=255)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  >  1:5627797/1‑36 (MQ=255)
                                   |                                   
AGTCACCTACCGCTTTGAACTGACCGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGC  >  REL606/840029‑840099

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG