Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,509,782 | G→T | 12.2% | V454L (GTA→TTA) | acrD → | aminoglycoside/multidrug efflux system |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,509,782 | 0 | G→T | 12.2% | 2.8 ‑4.4 ‑0.1 | 33 | 1360 | acrD | aminoglycoside/multidrug efflux system |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (8/21): total (12/21) | ||||||||||
Fisher's exact test strand distribution p-value = 1.21e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.11e-01 |
TGGTCGGGATTGCGATGGTTCTTTCGGCGGTATTTGTACCAATGGCCTTCTTCGGCGGCACCACCGGTGC > REL606/2509747‑2509816
|
tGGTCGGGATTGCGATGGTTCTTTCGGCGGTATTTg < 1:6585062/36‑1 (MQ=255)
gATTGCGATGGTTCTTTCGGCGGTATTTGTACCAAt < 1:766295/36‑1 (MQ=255)
gATTGCGATGGTTCTTTCGGCGGTATTTGTACCAAt < 1:6537706/36‑1 (MQ=255)
gATTGCGATGGTTCTTTCGGCGGTATTTGTACCAAt < 1:6128479/36‑1 (MQ=255)
aTTGCGATGGTTCTTTCGGCGGTATTTGTACCAATg < 1:810727/36‑1 (MQ=255)
aTTGCGATGGTTCTTTCGGCGGTATTTGTACCAATg < 1:6978742/36‑1 (MQ=255)
ttGCGATGGTTCTTTCGGCGGTATTTTTTCCAAttg > 1:6176863/1‑34 (MQ=21)
ttGCGATGGTTCTTTCGGCGGTATTTGTACCAATgg < 1:2906457/36‑1 (MQ=255)
ttGCGATGGTTCTTTCGGCGGTAGTTGTACCaagtt > 1:3758325/1‑33 (MQ=25)
gCGATGGTTCTTTCGGCGGTATTTGTACCAATGGcc < 1:7470044/36‑1 (MQ=255)
gCGATGGTTCTTTCGGCGGTATTTGTACCAATGGcc < 1:2629623/36‑1 (MQ=255)
gCGATGGTACTGTCGGCGGTATTTGTATCCATgtgc > 1:2803219/1‑33 (MQ=9)
gATGGTTCTTTCGGCGGTATTTGTACCAATGGCctt < 1:2206140/36‑1 (MQ=255)
tGGTTCTTTCGGCGGTATTTGTACCAATGGCcttct < 1:6297066/36‑1 (MQ=255)
ggTTCTTTCGGCGGTATTTGTACCAATGGCcttctt < 1:2735566/36‑1 (MQ=255)
gTTCTTTCGGCGGTATTTGTAGCAATGGCCttcttc < 1:1921926/36‑1 (MQ=255)
gTTCTTTCGGCGGTATTTGTACCAATGGCCttcttc < 1:2509742/36‑1 (MQ=255)
tCTTTCGGCGGTATTTTTTCCCATTGCCttcttctg > 1:603394/1‑34 (MQ=16)
tCTTTCGGCGGTATTTTTACCAATTGCcttcttttt > 1:5364942/1‑33 (MQ=18)
tCTTTCGGCGGTATTTTTACCAATTGCcttcttttg > 1:4754381/1‑33 (MQ=18)
tCTTTCGGCGGTATTTGTACCAATGGCCTTCTTcgg < 1:3317904/36‑1 (MQ=255)
ggcggTATTTGTACCAATGGCCTTCTTTGGCGGcac > 1:2528428/1‑36 (MQ=255)
gcggTATTTGTACCAATGGCCTTCTTCGGCGGcacc < 1:239754/36‑1 (MQ=255)
gcggTATTTGTACCAATGGCCTTCTTCGGCGGcacc > 1:2722514/1‑36 (MQ=255)
gcggTATTTGTACCAATGGCCTTCTTCGGCGGcacc < 1:1498862/36‑1 (MQ=255)
gcggTATTTGTACCAATGGCCTTCTTCGGCGGcacc > 1:1422292/1‑36 (MQ=255)
ggTATTTGTACCAATGGCCTTCTTCGGCGGcaccac < 1:581249/36‑1 (MQ=255)
ggTATTTGTACCAATGGCCTTCTTCGGCGGcaccac > 1:6637248/1‑36 (MQ=255)
tATTTGTACCAATGGCCTTCTTCGGCGGCACCACCg < 1:1529581/36‑1 (MQ=255)
tATTTGTACCAATGGCCTTCTTCGGCGGCACCACCg < 1:1168740/36‑1 (MQ=255)
aTTTGTACCAATGGCCTTCTTCGGCGGCACCACCgg > 1:698201/1‑36 (MQ=255)
tttGTACCAATGGCCTTCTTCGGCGGCACCACCGGt < 1:6608929/36‑1 (MQ=255)
tttGTACCAATGCCCTTCTTCGGCGGCACCACCGGt > 1:1382233/1‑36 (MQ=255)
tGTACCAATGGCCTTCTTCGGCGGCACCACCGGTGc < 1:2803140/36‑1 (MQ=255)
|
TGGTCGGGATTGCGATGGTTCTTTCGGCGGTATTTGTACCAATGGCCTTCTTCGGCGGCACCACCGGTGC > REL606/2509747‑2509816
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|