Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,315,848 | 0 | C→A | 12.1% | 0.8 ‑14.0 0.0 | 75 | 238 | yhcP | p‑hydroxybenzoic acid efflux system component |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/14): ref base (43/18): total (43/32) | ||||||||||
Fisher's exact test strand distribution p-value = 8.41e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAA > REL606/3315813‑3315883
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tGCGCGGATCATCGCAATGATGATCACCAGTCCGGc > 1:267995/1‑36 (MQ=255)
tGCGCGGATCATCGCAATGATGATCACCAGTCCGGc < 1:3341041/36‑1 (MQ=255)
gcgcGGATCATCGCAATGATGATCACCAGTCCGGCa > 1:2232706/1‑36 (MQ=255)
cgcgGATCATCGCAATGATGATCACCAGTCCGGCaa < 1:7921081/36‑1 (MQ=255)
gcgGATCATCGCAATGATGATCACCAGTCCGGCAAt < 1:6444203/36‑1 (MQ=255)
gcgGATCATCGCAATGATGATCACCAGTCCGGCAAt > 1:5891784/1‑36 (MQ=255)
cgGATCATCGCAATGATGATCACCAGTCCGGCAATa < 1:4405367/36‑1 (MQ=255)
cgGATCATCGCAATGATGATCACCAGTCCGGCAATa > 1:1493913/1‑36 (MQ=255)
cgGATCATCGCAATGATGATCACCAGTCCGGCAATa < 1:185946/36‑1 (MQ=255)
cgGATCATCGCAATGATGATCACCAGGCCGGCAATa > 1:1971838/1‑36 (MQ=255)
aggATCATCGAAATGATGATCAAAAGTCCGGCaaga > 1:2823283/2‑34 (MQ=19)
ggATCATCGCAATGATGATCACCAGTCCGGCAATAc > 1:1784143/1‑36 (MQ=255)
gATCATCGCAATGATGATCACCATTCCGGCAATACa < 1:4995737/36‑1 (MQ=255)
gATCATCGCAATGATGATCACCAGTCCGGCAATACa > 1:1137482/1‑36 (MQ=255)
gATCATCGCAATGATGATCACCAGTCCGGCAATACa > 1:5219913/1‑36 (MQ=255)
atcatcGCAATGATGATCACCAGTCCGGCAATACAg < 1:5021944/36‑1 (MQ=255)
atcatcGCAATGATGATCACCAGTCCGGCAATACAg < 1:1816981/36‑1 (MQ=255)
atcatcGCAATGATGATCACCAGTCCGGCAATACAg > 1:7641088/1‑36 (MQ=255)
tcatcGCAATGATGATCACCAGTCCGGCAATACAGc > 1:6244395/1‑36 (MQ=255)
tcatcGCAATGATGATCACCAGTCCGGCAATACAGc < 1:4647818/36‑1 (MQ=255)
tcatcGCAATGATGATCACCAGTCCGGCAATACAGc < 1:1447917/36‑1 (MQ=255)
tcatcGCAATGATGATCACCAGTCCGGCAATACAGc < 1:7126663/36‑1 (MQ=255)
tcatcGCAATGATGATCACCAGTCCGGCAATACAGc > 1:933321/1‑36 (MQ=255)
tcatcGCAATGATGATAACCAGTTCGGCAATACAGc < 1:2800113/36‑1 (MQ=37)
catcGCAATGATGATCACCAGTCCGGCAATACAGcc < 1:4526357/36‑1 (MQ=255)
catcGCAATGATGATCACCAGTCCGGCAATACAGcc < 1:3743918/36‑1 (MQ=255)
catcGCAATGATGATCACCAGTCCGGCAATACAGcc > 1:7479218/1‑36 (MQ=255)
catcGCAATGATGATCACCAGTCCGGCAATACAGcc < 1:1232964/36‑1 (MQ=255)
atcGCAATGATGATCACCAGTCCGGCAATACAGCCa < 1:2818950/36‑1 (MQ=255)
atcGCAATGATGATCACCAGTCCGGCAATACAGCCa < 1:7922119/36‑1 (MQ=255)
atcGCAATGATGATCACCAGTCCGGCAATACAGCCa > 1:235605/1‑36 (MQ=255)
tcGCAATGATGATCACCAGTCCGGCAATACAGTCaa < 1:1630667/36‑1 (MQ=255)
tcGCAATGATGATCACCAGTCCGGCAATACAGCCaa > 1:6988615/1‑36 (MQ=255)
tcGCAATGATGATCACCAGTCCGGCAATACAGCCaa > 1:2278989/1‑36 (MQ=255)
cGCAATGATGATCACCAGTCCGGCAATACAGCCAAt > 1:5173169/1‑36 (MQ=255)
cGCAATGATGATCACCAGTCCGGCAATACAGCCAAt > 1:2528108/1‑36 (MQ=255)
gCAATGATGATCACCAGTCCGGCAATACAGCCaaca > 1:5231054/1‑34 (MQ=255)
gCAATGATGATCACCAGTCCGGCAATACAGCCAATa > 1:4972105/1‑36 (MQ=255)
gCAATGATGATCACCAGTCCGGCAATACAGCCAATa > 1:285799/1‑36 (MQ=255)
cAATGATGATCACCAGTCCGGCAATACAGCCAATaa > 1:1026963/1‑36 (MQ=255)
cAATGATGATCACCAGTCCGGCAATACAGCCAATaa > 1:5751827/1‑36 (MQ=255)
cAATGATAACCACCAGTCCGGCAATACAGCCAATaa < 1:4690102/36‑1 (MQ=37)
aaTGATGATCACCAGTCCGGCAATACAGCCAATaaa > 1:890270/1‑36 (MQ=255)
aaTGATGATCACCAGTCCGGCAATACAGCCAATaaa > 1:2539179/1‑36 (MQ=255)
atgatgATCACCAGTCCGGCAATACAGCCAATAAAt > 1:7841/1‑36 (MQ=255)
atgatgATCACCAGTCCGGAAATACAGCCAATAAAt < 1:3327844/36‑1 (MQ=255)
aaaatgatCACAAGTCCGGAAATACAGCCAATAAAt < 1:1049617/33‑1 (MQ=21)
tgatgaTCACCAGTCCGGCAATACAGCCAATAAAtg > 1:5247317/1‑36 (MQ=255)
gatgatCACCAGTCCGGCAATACAGCCAATAAAtgt > 1:7294415/1‑36 (MQ=255)
atgatCACCAGTCCGGCAATACAGCCAATAAAtgtg > 1:1829941/1‑36 (MQ=255)
atgatCACAAGTCCGCAAATACAGCCAATAAAtgtg < 1:6082329/36‑1 (MQ=37)
tgatCACCAGTCCGGCAATACAGCCAATAAATGTGc > 1:3197902/1‑36 (MQ=255)
tgatCACCAGTCCGGCAATACAGCCAATAAATGTGc > 1:5172152/1‑36 (MQ=255)
gatCACCAGTCCGGCAATACAGCCAATAAATGTGcc > 1:2640493/1‑36 (MQ=255)
atCACCAGTCCGGCAATACAGCCAATAAATGTGCCg > 1:6198453/1‑36 (MQ=255)
tCACCAGTCCGGCAATACAGCCAATAAATGTGCCga > 1:490945/1‑36 (MQ=255)
tCACCAGTCAGGAAATACAGCCAATAAATGTGCCga < 1:6666042/36‑1 (MQ=37)
acACAAGTCCGTAAATCCAGCCAATAAATGTGCCga < 1:4009852/35‑1 (MQ=16)
cACCAGTCCGGCAATACAGCCAATAAATGTGCCgat > 1:2041743/1‑36 (MQ=255)
cACCAGTCCGGAAATACAGCCAATAAATGTGCCgat < 1:4700231/36‑1 (MQ=255)
cACAAGTCCGGAAATACAGCCAATAAATGTGCCgat < 1:7013904/36‑1 (MQ=37)
aCCAGTCCGGCAATACAGCCAATAAATGTGCCgatg > 1:5628968/1‑36 (MQ=255)
aCCAGTCCGGCAATACAGCCAATAAATGTGCCgatg > 1:4653298/1‑36 (MQ=255)
aCCAGTCCGGAAATACAGCCAATAAATGTGCCgatg < 1:5082163/36‑1 (MQ=255)
aCCAGTCCGCAAATCCAGCCAATAAATGTGCCgatg < 1:1266630/36‑1 (MQ=25)
caaGTCCGGAAATACAGCCAATAAATGTGCCgatga < 1:4911555/34‑1 (MQ=38)
gaGTCCGGAAATACAGCCAATAAATGTGCCgatgat < 1:6865781/35‑1 (MQ=255)
cAGTCCGGCAATACAGCCAATAAATGTGACgatgat > 1:5931456/1‑36 (MQ=255)
aaGTCCGGAAATACAGCCAATAAATGTGCCgatgat < 1:2552366/35‑1 (MQ=255)
gTCCGGCAATACAGCCAATAAATGTGCCGATGATgc > 1:1774434/1‑36 (MQ=255)
gTCCGCAAATACAGCCAATAAATGTGCCGATGATgc < 1:5477138/36‑1 (MQ=37)
tCCGGCAATACAGCCAATAAATGTGCCGATGATgcg > 1:4661940/1‑36 (MQ=255)
tCCGGCAATACAGCCAATAAATGTGCCGATGATgcg > 1:2111921/1‑36 (MQ=255)
ccGGAAACACAGCCAATAAATGTGCCGATGATgcgc < 1:2941903/36‑1 (MQ=37)
cGGCAATACAGCCAATAAATGTGCCGATGATGCGCa > 1:352431/1‑36 (MQ=255)
ggCAATACAGCCAATAAATGTGCCGATGATGCGGaa > 1:1312994/1‑36 (MQ=255)
gCAATACAGCCAATAAATGTGCCGATGATGCGCaaa > 1:6737264/1‑36 (MQ=255)
cAATACAGCCAATAAATGTGCCGATGATGCGCaaaa > 1:1413124/1‑36 (MQ=255)
cAATACAGCCAATAAATGTGCCGATGATGCGCaaaa > 1:1805474/1‑36 (MQ=255)
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TGCGCGGATCATCGCAATGATGATCACCAGTCCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAA > REL606/3315813‑3315883
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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