Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,600,5790A→T100.0% 0.1 1intergenic (‑527/‑226)ydfJ/ydfKpredicted transporter/predicted DNA‑binding transcriptional regulator
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

AAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATCG  >  REL606/1600565‑1600614
              |                                   
aaaCGACAAGGTTTTTCAACGAATTTTGAAAAAAcc                >  1:4544959/1‑36 (MQ=2)
              aTCTACGAACTTTAAGAACACCCAAGATAAAAATCg  >  1:3670276/1‑36 (MQ=35)
              |                                   
AAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATCG  >  REL606/1600565‑1600614

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 13 ≤  ATCG  < 20 ≤  ATCG  < 34 ≤  ATCG