Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,459,924 | A→C | 19.8% | V12V (GTT→GTG) | zipA ← | cell division protein ZipA |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,459,924 | 0 | A→C | 19.8% | 2.0 ‑4.2 0.0 | 40 | 36 | zipA | cell division protein ZipA |
Reads supporting (aligned to +/- strand): new base (9/0): ref base (16/14): total (26/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.49e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCATGTACCAGTAAAGCGATTATGGCGATCGCGCCAACAATGATTAATATCAGACGCAAATCCTGCATCAT > REL606/2459889‑2459959
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ccATGTACCAGTAAAGCGATTATGGCGATCGCGCca < 1:7794725/36‑1 (MQ=255)
ccATGTACCAGTAAAGCGATTATGGCGATCGCGCca < 1:6962728/36‑1 (MQ=255)
cATGTACCAGTAAAGCGATTATGGCGATCGCGCcaa < 1:5583874/36‑1 (MQ=255)
aTGTACCAGTAAAGCGATTATGGCGATCGCGCcaac < 1:7001964/36‑1 (MQ=255)
aTGTACCAGTAAAGCGATTATGGCGATCGCGCcaac < 1:5384491/36‑1 (MQ=255)
aTGTACCAGTAAAGCGATTATGGCGATCGCGCcaac < 1:1099474/36‑1 (MQ=255)
tGTACCAGTAAAGCGATTATGGCGATCGCGCcaaca < 1:7378590/36‑1 (MQ=255)
tGTACCAGTAAAGCGATTATGGCGATCGCGCcaaca > 1:292136/1‑36 (MQ=255)
tGTACCAGTAAAGCGATTATGGCGATCGCGCcaaca < 1:295430/36‑1 (MQ=255)
gTACCAGTAAAGCGATTATGGCGATCTCGTccacaa > 1:5206612/1‑36 (MQ=25)
tACCAGTAAAGCTATTATGGCGATCGCGCCAACAAt < 1:6993861/36‑1 (MQ=255)
tACCAGTAAAGCGATTATGGCGATTGCGCcaacaaa > 1:2583219/1‑35 (MQ=255)
tACCAGTAAAGCGATTATGGCGATCGCGCccacaaa > 1:4458468/1‑35 (MQ=255)
tACCAGTAAAGCGATTATGGCGATCGCGCCAACAAt < 1:3124658/36‑1 (MQ=255)
aCCAGTAAATCGATTATGGCGATCGCGCCAACAATg < 1:149063/36‑1 (MQ=255)
aCCAGTAAAGCGATTATGGCGATCGCGCCACCAATg > 1:2344213/1‑36 (MQ=255)
aCCAGTAAAGCGATTATGGCGACCGCGCCAACAATg > 1:752874/1‑36 (MQ=255)
ccAGTAAAGCGATTATGGCGATCCCGCCCACAATGa > 1:7135672/1‑36 (MQ=37)
cAGTAAAGCGATTATGGCGATCGCGCCAACAATGAt < 1:6216842/36‑1 (MQ=255)
aGTAAAGCGATTATGGCGATTCGGCCCACAATTAtt > 1:6633306/1‑36 (MQ=12)
gTAAAGCGATTATGGCGATCGGGCCCACAAAAATTa > 1:4684138/1‑36 (MQ=16)
gTAAAGCGATTATGGAGAAAACGCAAAGAATGAGTa > 1:3537347/1‑36 (MQ=0)
tAAAGCGATTATGGCGATCGCGCCAACAATGATTaa < 1:6511589/36‑1 (MQ=255)
aaaGCGATTATGGCGATCGCGCCCACAAAGAtttaa > 1:7834088/1‑33 (MQ=25)
aaGCGATTATGGCGATCGCGCCAACAATGATTAata < 1:871393/36‑1 (MQ=255)
aaGCGATTATGGCGATCGCGCCAACAAAGATTTata > 1:4490436/1‑36 (MQ=37)
aGCGATTATGGCGATGCCGGCAACAAAGATTAataa > 1:8249885/1‑35 (MQ=16)
aGCGATTATGGCGATCGCGCCAACAATGATTAatat < 1:174422/36‑1 (MQ=255)
gCGATTATGGCGATCGCGCCCACAATGATTAATATc > 1:5458842/1‑36 (MQ=255)
gCGATTATGGCGATCGCGCCAACAATGATTAATATc > 1:8354723/1‑36 (MQ=255)
gCGATTATGGCGATCGCGCCAACAATGATTAATATc < 1:6145854/36‑1 (MQ=255)
gCGATTATGGCGATCCCGCCCCCAAAAATTTatata > 1:5726318/1‑35 (MQ=2)
cGATTATGGCGATGACGACGAGAATCAGTAatatta > 1:6958171/1‑34 (MQ=0)
cGATTATGGCGATCTCGCCCACAAAGATTTatatta > 1:4463445/1‑34 (MQ=16)
cGATTATGGCGATCGCGCCCACAATAATTAATAACa > 1:4991708/1‑36 (MQ=25)
cGATTATGGCGATCGCGCCAACAATGATTAATATCa < 1:2413710/36‑1 (MQ=255)
cGATTATGGCGATCGCGCCAACAATGAATTatatta > 1:7896565/1‑34 (MQ=21)
gATTATGGCGATCGCGCCAACAATGATTAATATCAg > 1:7668333/1‑36 (MQ=255)
aTGGCGATCGCGCCCACAATGATTAATATCAGACGc > 1:2354717/1‑36 (MQ=255)
aTGGCGATCGCGCCAACAATGATTAATATCAGACGc > 1:5705208/1‑36 (MQ=255)
tGGCGATCGCGCCAACAATGATTAATATCAGACGCa > 1:3939338/1‑36 (MQ=255)
tGGCGATCGCGCCAACAATGATTAATATCAGACGCa < 1:2654737/36‑1 (MQ=255)
ggCGATCGCGCCAACAATGATTAATATCAGACGCaa > 1:811964/1‑36 (MQ=255)
ggCGATCGCGCCAACAATGATTAATATCAGACGCaa < 1:4616958/36‑1 (MQ=255)
cGATCGCGCCAACAATGATTAATATCAGACGCAAAt > 1:6284890/1‑36 (MQ=255)
gATCGCGCCAACAATGATTAATATCAGACGCAAATc > 1:8342997/1‑36 (MQ=255)
gATCGCGCCAACAATGATTAATATCAGACGCAAATc > 1:8268964/1‑36 (MQ=255)
gATCGCGCCAACAATGATTAATATCAGACGCAAATc < 1:6508046/36‑1 (MQ=255)
tCGCGCCANCAATGATTAATATCAGACGCAAATCCt < 1:6563074/36‑1 (MQ=255)
tCGCGCCAACAATGATTAATATCAGACGCAAATCCt < 1:915496/36‑1 (MQ=255)
gcgcCAACAATGATTAATATCAGACGCAAATCCTGc > 1:2968785/1‑36 (MQ=255)
ccAACAATGATTAATATCAGACGCAAATCCTGcatc > 1:1124797/1‑36 (MQ=255)
caacaaTGATTAATATCAGACGCAAATCCTGcatca < 1:1632280/36‑1 (MQ=255)
caacaaTGATTAATATCAGACGCAAATCCTGcatca > 1:818454/1‑36 (MQ=255)
caacaaTGATTAATATCAGACGCAAATCCTGcatca > 1:3643412/1‑36 (MQ=255)
caacaaTGATTAATATCAGACGCAAATCCTGcatca > 1:3014256/1‑36 (MQ=255)
aacaaTGATTAATATCAGACGCAAATCCTGcatcat < 1:4498704/36‑1 (MQ=255)
aacaaTGATTAATATCAGACGCAAATCCTGcatcat < 1:8327089/36‑1 (MQ=255)
aacaaTGATTAATATCAGACGCAAATCCTGcatcat < 1:1872613/36‑1 (MQ=255)
aacaaTGATTAATATCAGACGCAAATCCTGcatcat > 1:1839846/1‑36 (MQ=255)
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CCATGTACCAGTAAAGCGATTATGGCGATCGCGCCAACAATGATTAATATCAGACGCAAATCCTGCATCAT > REL606/2459889‑2459959
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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