New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 308482 =56 (0.910)7 (0.110) 3/70 NT 13.7% coding (554/606 nt) yahD predicted transcriptional regulator with ankyrin domain
?REL606 1580990 = 32 (0.520)coding (757/1389 nt) yneI predicted aldehyde dehydrogenase

CGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTGA  >  REL606/308447‑308517
                                   |                                   
tattgtgcttaacgatgccgatctggaactggcggg                                     <  1:8366445‑M1/1‑1 (MQ=255)
cGATAAATATGGCAAAACGCCACTGGAACTGGcgcg                                     <  1:7224042/36‑1 (MQ=255)
agATAAATAGGGCAAAACGCCACTGGGACTGGcgcg                                     >  1:8450990/2‑36 (MQ=25)
 gATAAATATGGCAAAACGCCACTGGAACTGGCGCgg                                    <  1:6887781/36‑1 (MQ=255)
 attgtgcttaacgatgccgatctggaactggcgggg                                    <  1:3128728‑M1/2‑1 (MQ=255)
 attgtgcttaacgatgccgatctggaactggcgggg                                    <  1:2357813‑M1/2‑1 (MQ=255)
 attgtgcttaacgatgccgatctggaaccggcgggg                                    <  1:3296095‑M1/2‑1 (MQ=255)
  ttgtgcttaacgatgccgatctggaactggcggggg                                   <  1:6269464‑M1/3‑1 (MQ=255)
  ttgtgcttaacgatgccgatctggaactggcggggg                                   <  1:5839275‑M1/3‑1 (MQ=255)
   tAAATATGGCAAAACGCCACTGGAACTGGCGCGGGa                                  >  1:5668340/1‑36 (MQ=255)
    gtgcttaacgatgccgatctggaactggcgggggga                                 <  1:1529302‑M1/5‑3 (MQ=255)
    aaaTATGGCAAAACGCCACTGGAACTGGCGCGGGaa                                 <  1:8046418/36‑1 (MQ=255)
     aagatGACAAAACGCCACTGGAACTGGCGCGGGAAc                                <  1:2124948/33‑1 (MQ=37)
     aaTATGGCAAAACGCCACTGGAACTGGCGCGGGAAc                                <  1:443585/36‑1 (MQ=255)
     aaTATGGCAAAACGCCACTGGAACTGGCGCGGGAAc                                <  1:706848/36‑1 (MQ=255)
     aaTATGGCAAAACGCCACTGGAACTGGCGCGGGAAc                                >  1:333407/1‑36 (MQ=255)
     aaTATGGCAAAACGCCACTGGAACTGGCGCGGGAAc                                <  1:5471354/36‑1 (MQ=255)
     aaTATGGCAAAACGCCACTGGAACTGGCGCGGGAAc                                <  1:710389/36‑1 (MQ=255)
      atatGGCAAAACGCCACTGGAACTGGCGCGGGAACg                               <  1:395090/36‑1 (MQ=255)
        atGGCAAAACGCCACTGGAACTGGCGCGGGAACggg                             >  1:2529618/1‑36 (MQ=255)
         tGGCAAAACGCCACTGGAACTGGCGCGGGAACgggg                            >  1:4369852/1‑36 (MQ=255)
          ggCAAAACGCCACTGGAACTGGCGCGGGAACGGGGc                           <  1:6374435/36‑1 (MQ=255)
          ggCAAAACGCCACTGGAACTGGCGCGGGAACGGGGc                           <  1:6594017/36‑1 (MQ=255)
           gCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCt                          >  1:3935447/1‑36 (MQ=255)
           gCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCt                          <  1:5872151/36‑1 (MQ=255)
            cAAAACGCCACTGGAACTGGCGCGGGAACGGGGCtt                         <  1:923668/36‑1 (MQ=255)
             aaaaCGCCACTGGAACTGGCGCGGGAACGGGGCttt                        <  1:2866565/36‑1 (MQ=255)
              aaaCGCCACTGGAACTGGCGCGGGAACGGGGCTTTg                       >  1:7581552/1‑36 (MQ=255)
               aaCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGa                      >  1:7498428/1‑36 (MQ=255)
               aaCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGa                      <  1:229873/36‑1 (MQ=255)
                aCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGaa                     <  1:404448/36‑1 (MQ=255)
                aCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGaa                     <  1:812566/36‑1 (MQ=255)
                aCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGaa                     <  1:4764622/36‑1 (MQ=255)
                aCGCCACTGGAACTGGCGCGGGAACGGGGCTTTGaa                     <  1:6453086/36‑1 (MQ=255)
                 cGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAag                    <  1:2331879/36‑1 (MQ=255)
                  ggcACTGGAACGGGCGCGGGAACGGGGCTTTGAaga                   <  1:6694641/34‑1 (MQ=37)
                  gCCACTGGAACTGGCGCGGGAACGGGGCTTTGAaga                   <  1:47694/36‑1 (MQ=255)
                  gCCACTGGAACGGGCGCGGGAACGGGGCTTTGAaga                   <  1:4404889/36‑1 (MQ=255)
                   ccACTGGAACTGGCGCGGGAACGGGGCTTTGAagag                  <  1:6182279/36‑1 (MQ=255)
                     aCTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGAt                <  1:3307360/36‑1 (MQ=255)
                     aCTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGAt                >  1:6764225/1‑36 (MQ=255)
                       tGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTg              >  1:3492131/1‑36 (MQ=255)
                        ggAACTGGCGCGGGAACGGGGCTTTGAAGAGAttac             >  1:6594898/1‑34 (MQ=255)
                        ggAACTGGCGCGGGAACGGGGCTTTGAAGAGATTgc             >  1:704467/1‑36 (MQ=255)
                         gAACTGGCGCGGGTACGGGGGTTTGAAGAGATTgcg            >  1:850873/1‑36 (MQ=37)
                         gAACTGGCGCGGGAACGGGGCTTTGAAGAGATTgcg            <  1:7727293/36‑1 (MQ=255)
                         gAACTGGCGCGGGAACGGGGCTTTGAAGAGATTgcg            >  1:2624941/1‑36 (MQ=255)
                         gAACTGGCGCGGGAACGGGGCTTTGAAGAGATTgcg            <  1:2079470/36‑1 (MQ=255)
                          aaCTGGCGCGGGAACGGGGCTTTGAAGAGATTgcgc           >  1:1317275/1‑36 (MQ=255)
                           aCTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCa          <  1:6600338/36‑1 (MQ=255)
                            cTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAg         >  1:4337262/1‑36 (MQ=255)
                             tGGCGCGGGAACGGGGTTTTGAAGAGATTGCGCAGt        <  1:4758270/36‑1 (MQ=255)
                              ggCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGtt       <  1:1591301/36‑1 (MQ=255)
                              ggCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGtt       <  1:590610/36‑1 (MQ=255)
                              ggCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGtt       <  1:8337107/36‑1 (MQ=255)
                               gcgcGGGACCGGGGCTTTGAAGAGATTGCGCAGTTa      <  1:5658671/36‑1 (MQ=255)
                               gcgcGGGAACGGGGCTTTGAAGAGATTGCGCAGTTa      >  1:5559775/1‑36 (MQ=255)
                                 gcgGGAACGGGGCTTTGAAGAGATTGCGCAGTTACt    >  1:4608624/1‑36 (MQ=255)
                                 gcgGGAACGGGGCTTTGAAGAGATTGCGCAGTTACt    >  1:6763577/1‑36 (MQ=255)
                                 gcgGGAACGGGGATTTGAAGAGATTGCGCAGTTACt    >  1:8348968/1‑36 (MQ=255)
                                  cgGGCACGGGGCTTTGAAGCGATTGCGCAGTTGCTg   <  1:6791018/36‑1 (MQ=21)
                                  cgGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTg   >  1:5514692/1‑36 (MQ=255)
                                  cgGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTg   <  1:2416500/36‑1 (MQ=255)
                                   gggAACGGGGCTTTGAAGAGATTGCGCAGTTACTGa  <  1:383103/36‑1 (MQ=255)
                                   gggAACGGGGCTTTGAAGAGATTGCGAGGTTACTgg  >  1:1606590/1‑35 (MQ=37)
                                   |                                   
CGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTGA  >  REL606/308447‑308517

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG