Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,545,811 | 0 | A→T | 6.7% | 0.2 ‑8.4 0.0 | 66 | 1457 | nikA | nickel transporter subunit |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (7/0): ref base (15/44): total (22/44) | ||||||||||
Fisher's exact test strand distribution p-value = 2.19e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GACATTCTGACCCGTCTGCATGACGAGGCGGTTTATCTGCCTATCAGTTACATCTCAATGATGGTGGTAT > REL606/3545777‑3545846
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gACATTCTGACCCGTCTGCATGACGAGGCGGTTTAt < 1:4930259/36‑1 (MQ=255)
aCATTCTGACCCGTCTGCATGACGAGGCGGTTTATc < 1:1355630/36‑1 (MQ=255)
aCATTCTGACCCGTCTGCATGACGAGGCGGTTTATc < 1:351427/36‑1 (MQ=255)
cATTCTGACCCGTCTGCATGACGAGGCGGTTTATCt < 1:410394/36‑1 (MQ=255)
cATTCTGACCCGTCTGCATGACGAGGCGGTTTATCt < 1:3205793/36‑1 (MQ=255)
aTTCTGACCCGTCTGCATGACGAGGCGGTTTTTCtt > 1:3804282/1‑35 (MQ=255)
aTTCTGACCCGTCTGCATGACGAGGCGGTTTTTCtt > 1:2646985/1‑35 (MQ=255)
aTTCTGACCCGTCTGCATGACGAGGCGGTTTATCTg < 1:2462470/36‑1 (MQ=255)
tCTGACCCGTCTGCATGACGAGGCGGTTTATCTGcc < 1:784205/36‑1 (MQ=255)
tCTGACCCGTCTGCATGACGAGGCGGTTTATCTGcc < 1:5001965/36‑1 (MQ=255)
gcTGACCCGTCTGCATGACGAGGCGGTTTATCTGcc < 1:370130/35‑1 (MQ=255)
tGACCCGTCTGCATTGCGAGGCGGTTTATCTGCCTa < 1:6491533/36‑1 (MQ=37)
tGACCCGTCTGCATGACGAGGCGGTTTATCTTCCtt > 1:7189171/1‑35 (MQ=255)
tGACCCGTCTGCATGACGAGGCGGTTTATCTGCCTa < 1:6422476/36‑1 (MQ=255)
tGACCCGTCTGCATGACGAGGCGGTTTATCTGCCTa < 1:2891516/36‑1 (MQ=255)
gACCCGTCTGCATGACGAGGCGGTTTATCTGCCTAt < 1:4401132/36‑1 (MQ=255)
aCCCGTCTGCATGACGAGGCGGTTTATCTGCCTATc < 1:762181/36‑1 (MQ=255)
aCCCGTCTGCATGACGAGGCGGTTTATCTGCCTATc < 1:5350391/36‑1 (MQ=255)
cccGTCTGCATGACGAGGCGGTTTTTCTGCCTATCa > 1:7135315/1‑36 (MQ=255)
cccGTCTGCATGACGAGGCGGTTTATCTGCCTATCa < 1:3932917/36‑1 (MQ=255)
ccGTCTGCATGACGAGGCGGTTTATCTTCCTATCat > 1:1248849/1‑35 (MQ=255)
ccGTCTGCATGACGAGGCGGTTTATCTGCCTATCAg < 1:3472065/36‑1 (MQ=255)
ccGTCTGCATGACGAGGCGGTTTATCTGCCTATCAg < 1:3852164/36‑1 (MQ=255)
gTCTGCATGACGAGGCGGTTTTTCTTCCTATCCGtt > 1:2209859/1‑36 (MQ=25)
gTCTGCATGACGAGGCGGTTTATTTTCCTATCAGtt > 1:2661881/1‑36 (MQ=37)
gTCTGCATGACGAGGCGGTTTATCTGCCTATCAGtt < 1:412421/36‑1 (MQ=255)
tCTGCATGACGAGGCGGTTTATCTGCCTATCAGTTa < 1:7181602/36‑1 (MQ=255)
tCTGCATGACGAGGCGGTTTATCTGCCTATCAGTTa < 1:6411922/36‑1 (MQ=255)
tGCATGACGAGGCGGTTTTTCTTCCTTTTAGTTGCa > 1:5551070/1‑36 (MQ=16)
tGCATGACGAGGCGGTTTATCTGCCTATCAGTTACa < 1:1009999/36‑1 (MQ=255)
tGCATGACGAGGCGGTTTATCTGCCTATCAGTTACa < 1:4263807/36‑1 (MQ=255)
gCATGACGAGGCGGTTTATCTGCCTATCAGTTACAt < 1:4204091/36‑1 (MQ=255)
cATGACGAGGCGGTTTATCTTCCTATCAGTTACAtc > 1:4985042/1‑36 (MQ=255)
cATGACGAGGCGGTTTATCTGCCTATCAGTTACAtc < 1:6162348/36‑1 (MQ=255)
cATGACGAGGCGGTTTATCTGCCTATCAGTTACAtc < 1:445797/36‑1 (MQ=255)
cATGACGAGGCGGTTTATCTGCCTATCAGTTACAtc < 1:5743558/36‑1 (MQ=255)
cATGACGAGGCGGTTTATCTGCCTATCAGTTACAtc < 1:1358966/36‑1 (MQ=255)
cATGACGAGGCGGCTTTTCTTCCTATTAGTTACAtc > 1:2751623/1‑36 (MQ=19)
aTGACGAGGCGGTTTATCTTCCTATCAGTTACAtct > 1:1325102/1‑36 (MQ=255)
tGACGAGTCGGTTTATCTGCCTCTCAGTTACAtctc < 1:5591060/36‑1 (MQ=38)
tGACGAGGCGGTTTATCTGCCTATCAGTTACAtctc < 1:5433448/36‑1 (MQ=255)
gACGAGGCGGTTTATCTGCCTATCAGTTACATCTCa < 1:2102378/36‑1 (MQ=255)
gACGAGGCGGGTTTTTTTCCTATCAGTTACAtctct > 1:5523549/1‑35 (MQ=16)
aCGAGGCGGTTTATCTGCCTATCAGTTACATCTCaa < 1:6342019/36‑1 (MQ=255)
aCGAGGCGGTTTAGCTGCCTATCAGTTACATCTCaa > 1:3049454/1‑36 (MQ=255)
cGAGGCGGTTTATCTGCCTATCAGTTACATCTCAat < 1:4299994/36‑1 (MQ=255)
cGAGGCGGTTTATCTGCCTATCAGTTACATCTCAat < 1:3671934/36‑1 (MQ=255)
cGAGGCGGTTTATCTGCCTATCAGTTACATCTCAat < 1:5413633/36‑1 (MQ=255)
aGGCGGTTTATCTTCCTATCAGTTAAATCTTAatga > 1:550112/1‑36 (MQ=37)
aGGCGGTTTATCTGCCTATCAGTTACATCTCAatga < 1:7411051/36‑1 (MQ=255)
aGGCGGTTTATCTGCCTATCAGTTACATCTCAatga > 1:6766812/1‑36 (MQ=255)
ggCGGTTTATCTGCCTATCAGTTACATCTCAatgat < 1:1041964/36‑1 (MQ=255)
ggCGGTTTATCTGCCTATCAGTGACATCTCAatgat < 1:2568294/36‑1 (MQ=255)
gCGGTTTATCTGCCTATCAGTTACATCTCAatgatg > 1:3989344/1‑36 (MQ=255)
cGGTTTATCTGCCTATCAGTTACATCTCAATGAtgg < 1:2473122/36‑1 (MQ=255)
cGGTTTATCTGCCTATCAGTTACATCTCAATGAtgg > 1:676098/1‑36 (MQ=255)
cGGTTTATCTGCCTATCAGTTACATCTCAATGAtgg > 1:5862830/1‑36 (MQ=255)
gTTTATCTGCCTATCATTTACATCTCAATGAtggtg > 1:7246806/1‑36 (MQ=255)
gTTTATCTGCCTATCAGTTACATCTCAATGAtggtg > 1:1995831/1‑36 (MQ=255)
gTTTATCTGCCTATCAGTTACATCTCAATGAtggtg < 1:5152823/36‑1 (MQ=255)
tttATCTGCCTATCAGTTACATCTCAATGAtggtgg < 1:1086588/36‑1 (MQ=255)
tttATCTGCCTATCAGTTACATCTCAATGAtggtgg > 1:7486436/1‑36 (MQ=255)
ttATCTGCCTATCAGTTACATCTCAATGATggtggt < 1:5655393/36‑1 (MQ=255)
tATCTGCCTATCAGTTACATCTCAATGATGGTGGTa > 1:1679226/1‑36 (MQ=255)
tATCTGCCTATCAGTTACATCTCAATGATGGTGGTa < 1:4567317/36‑1 (MQ=255)
tATCTGCCTATCAGTTACATCTCAATGATGGTGGTa < 1:526880/36‑1 (MQ=255)
aTCTGCCTATCAGTTACATCTCAATGATGGTGGTAt < 1:5485192/36‑1 (MQ=255)
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GACATTCTGACCCGTCTGCATGACGAGGCGGTTTATCTGCCTATCAGTTACATCTCAATGATGGTGGTAT > REL606/3545777‑3545846
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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