Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 751,788 | G→T | 21.3% | intergenic (+295/‑552) | ybgG → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 751,788 | 0 | G→T | 21.3% | 2.0 ‑2.2 0.0 | 31 | intergenic (+295/‑552) | ybgG/cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
Reads supporting (aligned to +/- strand): new base (6/2): ref base (9/14): total (15/16) | ||||||||||
Fisher's exact test strand distribution p-value = 1.13e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATT > REL606/751757‑751823
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cTAAATGTTAATATTGGCGGGGTGGATTTATTCCtt < 1:6367914/36‑1 (MQ=255)
tAAATGTTAATATTGGCGGGGTGGATTTATGCCttt < 1:7015988/36‑1 (MQ=255)
aaaTGTTAATATTGGCGGGGTGGGTTTTTTCCtttt > 1:2642377/1‑35 (MQ=21)
aaaTGTTAATATTGGCGGGGTGGATTTATTCCTtta < 1:6240503/36‑1 (MQ=255)
aaTGTTAATATTGGCGGGGTGGGTTTTTTCCttttt > 1:5638999/1‑34 (MQ=25)
aaTGTTAATATTGGCGGGGTGGGTTTTTTCCtttct > 1:4904949/1‑34 (MQ=25)
tAATATTGGCGGGGTGGATTTATGCCTTTATTATTa > 1:1313261/1‑36 (MQ=255)
tAATATTGGCGGGGTGGAGTTATGCCTTTATTAGTa < 1:4765246/36‑1 (MQ=255)
tAATATTGGCGGGGAGGCTTTATTTGTttattattt > 1:1573236/1‑33 (MQ=9)
aaTATTGGCGGGGTGGATTTATTCCTTTTTTATTaa > 1:7387/1‑36 (MQ=21)
aaTATTGGCGGGGTGGATTTATGCCTTTATTAGTaa < 1:6813817/36‑1 (MQ=255)
atatTGGCGGGGTGGATTTATGCCTTTATTAGTAAt < 1:2928739/36‑1 (MQ=255)
atatTGGCGGGGGGGGTTTTTTCCTTTTTTTTTAAt > 1:7270706/1‑36 (MQ=2)
tatTGGCGGGGTGGATTTATGCCTTTATTAGTAATc < 1:1912715/36‑1 (MQ=255)
tatTGGCGGGGTGGATTTATGCCTTTATTAGTAATc < 1:6633205/36‑1 (MQ=255)
ttGGCGGGGTGGATTTATGCCTTTATTAGTAATCCt > 1:4086382/1‑36 (MQ=255)
ttGGCGGGGTGGATTTATGCCTTTATTAGTAATCCt > 1:4677319/1‑36 (MQ=255)
ggCGGGGTGGATTTATGCCTTTATTAGTAATCCTGa < 1:1798152/36‑1 (MQ=255)
gCGGGGTGGATTTATGCCTTTATTAGTAATCCTGaa > 1:4153834/1‑36 (MQ=255)
gggTGGAATTATGCCTTTATTAGTAATCCTGAAAct < 1:6120842/36‑1 (MQ=255)
ggTGGATTTATGCCTTTATTAGTAATCCTGAAActc > 1:7210700/1‑36 (MQ=255)
gTGGATTTATGCCTTTATTAGTAATCCTGAAActct < 1:6534644/36‑1 (MQ=255)
ggATTTATGCCTTTATTAGTAATCCTGAAACTCTGc < 1:1998097/36‑1 (MQ=255)
gATTTATGCCTTTATTAGTAATCCTGAAACTCTGcg > 1:378416/1‑36 (MQ=255)
tttATGCCTTTATTAGTAATCCTGAAACTCTGcgtc < 1:165108/36‑1 (MQ=255)
ttATGCCTTTATTAGTAATCCTGAAACTCTGcgtcg < 1:7240872/36‑1 (MQ=255)
aTGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTa > 1:5148183/1‑36 (MQ=255)
aTGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTa > 1:1819286/1‑36 (MQ=255)
aTGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTa < 1:1080432/36‑1 (MQ=255)
tGCTTTTATTAGTAATCCTGAAACTCTGCGTCGTAt < 1:7486542/36‑1 (MQ=255)
tGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTAt > 1:2270539/1‑36 (MQ=255)
gCCTTTATTAGTAATCCTGAAACTCTGCGTCGTAtt < 1:4543802/36‑1 (MQ=255)
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CTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATT > REL606/751757‑751823
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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