Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 887,247 | T→A | 15.7% | R452R (CGT→CGA) | ECB_00825 → | putative replication protein for prophage |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 887,247 | 0 | T→A | 15.7% | 4.4 ‑4.3 0.0 | 40 | 1356 | ECB_00825 | putative replication protein for prophage |
Reads supporting (aligned to +/- strand): new base (0/7): ref base (17/16): total (17/23) | ||||||||||
Fisher's exact test strand distribution p-value = 1.42e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTACTGTGCACTGGCATCTCATGTGTTTCATGCGTAAAAAAGACCGCCGCGCCATCACTGCATTACTGC > REL606/887213‑887281
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gTACTGTGCACTTGCATCTCATGTGTTTCATGCGTa < 1:7298357/36‑1 (MQ=255)
gTACTGTGCACTGGCATCTCATGTGTTTCATGCGTa < 1:7972315/36‑1 (MQ=255)
tACTGTGCACTGGCATCTCATGTGTTTCATGCGTaa < 1:8455820/36‑1 (MQ=255)
aCTGTGCACTGGCATCTCATGTGTTTCATGCGTaaa < 1:1468121/36‑1 (MQ=255)
gtgCACTGGCATCTCATGTGTTTCATGCGTaaaaaa < 1:1540761/36‑1 (MQ=255)
gtgCACTGGCATCTCATGTGTTTCATGCGTaaaaaa < 1:5826070/36‑1 (MQ=255)
gCACTGGCATCTCATGTGTTTCATGCGTAAAAAAGa < 1:8208275/36‑1 (MQ=255)
gCACTGGCATCTCATGTGTTTCATGCGTAAAAAAGa < 1:2741457/36‑1 (MQ=255)
aCTGGCATCTCATGTGTTTCATGCGTAAAAAAGAcc > 1:6563766/1‑36 (MQ=255)
cTGGCATCTCATGTGTTTCATGCGTAAAAAAGAccg > 1:6109237/1‑36 (MQ=255)
cTGGCATCTCATGTGTTTCATGCGTAAAAAAGAccg < 1:1738438/36‑1 (MQ=255)
ggCATCTCATGTGTTTCATGCGTAAAAAAGAccgcc < 1:6839608/36‑1 (MQ=255)
ggCATCTCATGTGTTTCATGCGTAAAAAAGAccgcc < 1:4139686/36‑1 (MQ=255)
ggCATCTCATGTGTTTCATGCGTAAAAAAGAccgcc > 1:7681310/1‑36 (MQ=255)
gCATCTCATGTGTTTCATGCGTAAAAAAGAccgccg > 1:5901273/1‑36 (MQ=255)
cATGTGTTTCATGCGTAAAAAAGACCGCCGCGCCAt > 1:1993059/1‑36 (MQ=255)
cATGTGTTTCATGCAAAAAAAAGCCCGCCGCGCCAt < 1:7247085/36‑1 (MQ=25)
cATGTGTTTAATGCGAAAAAAAGACCGCCGCGCCAt < 1:3460517/36‑1 (MQ=37)
aTGTGTTTCATGCGTAAAAAAGACCGCCGCGCCATc > 1:3042447/1‑36 (MQ=255)
aTGTGTTTCATGCGTAAAAAAGACCGCCGCGCCATc > 1:3983177/1‑36 (MQ=255)
aTGTGTTTCATCCATAAAAAAGGCCGCCGCGCCATc < 1:1194819/36‑1 (MQ=25)
aTGTGTTTCAGGCGTAAAAAAGACCGCCGCGCCATc < 1:4627074/36‑1 (MQ=255)
tgtgTTTCGTGAAAAAAAAACACCGCCGCGCCATCa < 1:5238731/36‑1 (MQ=16)
tgtgTTTCATGCGTAAAAAAGACCGCCGCGCCATCa > 1:4531047/1‑36 (MQ=255)
tgtgTTTCATGCGAAAAAAAGCCCGCCGCGCCATCa < 1:2325084/36‑1 (MQ=37)
agtgtTTCATGAATAAAAAACCCCGCCGCGCCATCa < 1:2404539/35‑1 (MQ=16)
gtTTCATGCGTAAAAAAGACCGCCGCGCCATCACTg > 1:3585033/1‑36 (MQ=255)
tttCATGCGTAAAAAGGACCGCCGCGCCATCACTGc < 1:6517860/36‑1 (MQ=255)
tttAATGCGAAAAAAAGACCGCCGCGCCATCACTGc < 1:4145637/36‑1 (MQ=37)
tCATGCAAAAAAAAGACCGCCGCGCCATCACTGCAt < 1:1932984/36‑1 (MQ=37)
aTGCGTAAAAAAGACCGCCGCGCCATCACTGCATTa > 1:4822834/1‑36 (MQ=255)
aTGCGTAAAAAAGACCGCCGCGCCATCACTGCATTa > 1:3372260/1‑36 (MQ=255)
aTGCGTAAAAAAGACCGCCGCGCCATCACTGCATTa > 1:2869401/1‑36 (MQ=255)
aTGCGTAAAAAAGACCGCCGCGCCATCACTGCATTa > 1:6739951/1‑36 (MQ=255)
tGCGTAAAAAAGACCGCCGCGCCATCACTGCATTAc < 1:7934319/36‑1 (MQ=255)
tGCGTAAAAAAGACCGCCGCGCCATCACTGCATTAc > 1:4699447/1‑36 (MQ=255)
gCGTAAAAAAGACCGCCGCGCCATCACTGCATTACt > 1:2729215/1‑36 (MQ=255)
gCGAAAAAAAGCCCGCCGCGCCATCACTGCATTACt < 1:990580/36‑1 (MQ=37)
cGTAAAAAAGACCGCCGCGCCATCACTGCATTACTg > 1:643388/1‑36 (MQ=255)
gTAAAAAAGACCGCCGCGCCATCACTGCATTACTGc > 1:7179167/1‑36 (MQ=255)
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GTACTGTGCACTGGCATCTCATGTGTTTCATGCGTAAAAAAGACCGCCGCGCCATCACTGCATTACTGC > REL606/887213‑887281
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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