Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,737,779 | G→C | 18.8% | A42G (GCA→GGA) | hycI ← | protease involved in processing C‑terminal end of HycE |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,737,779 | 0 | G→C | 18.8% | 3.9 ‑3.8 0.0 | 47 | 125 | hycI | protease involved in processing C‑terminal end of HycE |
Reads supporting (aligned to +/- strand): new base (1/8): ref base (21/15): total (22/25) | ||||||||||
Fisher's exact test strand distribution p-value = 2.20e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCAGTTCACGGATGGCGACGATGTCGTTTTCCGGTGCACTACCGCCATCAATCACCACCCAGTTACCTTTC > REL606/2737744‑2737814
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gcAGTTCGCGGATGACGACGATGTCGTTTTCCGATg < 1:423325/36‑1 (MQ=25)
cAGTTCACGGATGGCGACGATGTCGTTTTCCGGTgg > 1:3215353/1‑35 (MQ=255)
aGTTCACGGATGGCGACGATGTCGTTTTCCGGTGCa > 1:1820106/1‑36 (MQ=255)
aGTTCACGGATGGCGACGATGTCGTTTTCCGGTGCa > 1:4239021/1‑36 (MQ=255)
aGTTCACGGATGGCGACGATGTCGTTTTCCGGTGCa > 1:3173442/1‑36 (MQ=255)
gTTCACGGATTGCGACGATGTCGTTTTCCGGTGCAc < 1:3730424/36‑1 (MQ=255)
gTTCACGGATGGCGGCGATGTCGTTTTCCGGTGCAc < 1:2557360/36‑1 (MQ=255)
ttCACGGATGGCGACGATGTCGTTTTCCGGTGCACt < 1:2075906/36‑1 (MQ=255)
cACGGATGGCGACGATGTCGTTTTCCGGTGCACTAc > 1:1982268/1‑36 (MQ=255)
cACGGATGGCGACGATGTCGTTTTCCGGTGCACTAc < 1:436684/36‑1 (MQ=255)
gcGGATGGCGACGATGTCGTTTTCCGGTGCACTAcc < 1:5424957/35‑1 (MQ=255)
aCGGATGGCGACGATGTCGTTTTCCGGTGCACTAcc < 1:394288/36‑1 (MQ=255)
ggATGGCGACGATGTCGTTTTCCGGTGCACTACCGc < 1:5454565/36‑1 (MQ=255)
ggATGGCGACGATGTCGTTTTCCGGTGCACTACCGc > 1:4898221/1‑36 (MQ=255)
ggATGGCGACGATGTCGTTTTCCGGTGCACTACCGc > 1:5774485/1‑36 (MQ=255)
ggATGGCGACGATGTCGTTTTCCGGTGCACTACCGc < 1:4222546/36‑1 (MQ=255)
ggATGGCGACGATGTCGTTTTCCGGGGCACTACCGc > 1:24920/1‑36 (MQ=255)
ggATGGCGACGATGTCGTCTTCCCCTCCACCACCGc > 1:4162149/1‑36 (MQ=16)
aTGGCGACGATGTCGTTTTCCGGTGCACTACCGCCa > 1:3577578/1‑36 (MQ=255)
aTGGCGACGATGTCGTTTTCCGGTGCACTACCGCCa > 1:2282481/1‑36 (MQ=255)
ggCGACGATGTCTTTTCCCGGTGCACTACCGCCatc < 1:895951/36‑1 (MQ=37)
gCGACGTTGTCTTTTCCCGGTCCACTACCGCCatca < 1:3060359/36‑1 (MQ=16)
gCGACGATGTCGTTTTCCGGTGCACTACCGCCatca > 1:2909786/1‑36 (MQ=255)
gCGACGATGTCGTTTTCCGGTGCACTACCGCCatca > 1:5116184/1‑36 (MQ=255)
gacgaTGTCGTTTTCCGGTGCACTACCGCCatcaat > 1:1279349/1‑36 (MQ=255)
acgaTGTCGTTTTCCGGTGCACTACCGCCatcaatc > 1:5560648/1‑36 (MQ=255)
gaTGTTGTTTACCGGTGCAAAACCGCCATCAATcac < 1:949788/36‑1 (MQ=16)
gaTGTCTTTTTCCGGTGCACTACCGCCATCAATcac < 1:3915294/36‑1 (MQ=255)
gaTGTCTTTTTCCGGCACAGCGCCGCCATCAATcac < 1:3627077/36‑1 (MQ=2)
gaTGTCGTTTTCCGGTGCACTACCGCCATCAATcac > 1:1621159/1‑36 (MQ=255)
gaTGTCGTTTTCCGGTGCACTACCGCCATCAATcac > 1:2577043/1‑36 (MQ=255)
gaTGTCGTTTTCCGGTGCACTACCGCCATCAATcac > 1:3245071/1‑36 (MQ=255)
aTGTCATTTCCGGGTCCCCTCCCGCCATCAATcacc < 1:4217774/36‑1 (MQ=9)
tGTCGTTTCCCGGTGCACTACCGCCATCAATcacca < 1:3013186/36‑1 (MQ=255)
gTCGTTTTCCGGTGCACTACCGCCATCAATcaccac > 1:2371354/1‑36 (MQ=255)
tCGTTTCCCGGTCCACTACCGCCATCAATCaccacc < 1:1490363/36‑1 (MQ=37)
ctttttCGGGCCCACAACCGCCATCAATCACCAccc < 1:3756345/34‑1 (MQ=16)
tttCCGGTGCACTACCGCCATCAATCACCACCCAGt > 1:3528608/1‑36 (MQ=255)
ttCCGGGCCACTACCGCCATCAATCACCACCCAGtt < 1:5726002/36‑1 (MQ=37)
cccGGTCAACTACCGCCATCAATCACCACCCAGTTa < 1:300792/35‑1 (MQ=37)
ccGGTACACTACCGCCATCAATCACCACCCAGTTAc < 1:5505359/36‑1 (MQ=255)
cgttGCACCACCACCATCAATCACCACCCAGTTAcc < 1:4395653/33‑1 (MQ=21)
cGGTCCACTACCGCCATCAATCACCACCCAGTTAcc < 1:5044079/36‑1 (MQ=255)
cGGTCCACCACCGCCATCAATCACCACCCAGTTAcc < 1:3222414/36‑1 (MQ=37)
ggTGCCCTACCGCCATCAATCACCACCCAGTTACCt < 1:811058/36‑1 (MQ=255)
gTGCACTACCGCCATCAATCACCACCCAGTTACCtt > 1:4608375/1‑36 (MQ=255)
gTGCACTACCGCCATCAATCACCACCCAGTTACCtt > 1:3594038/1‑36 (MQ=255)
gTGCACTACCGCCATCAATCACCACCCAGTTACCtt < 1:5825367/36‑1 (MQ=255)
gTGCACTACCGCCATCAATCACCACCCAGTTACCtt > 1:3741025/1‑36 (MQ=255)
gCACTACCGCCATCAATCACCACCCAGTTACCTTTc < 1:579110/36‑1 (MQ=255)
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GCAGTTCACGGATGGCGACGATGTCGTTTTCCGGTGCACTACCGCCATCAATCACCACCCAGTTACCTTTC > REL606/2737744‑2737814
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 12 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
|