Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,113,332 | G→T | 13.3% | D204Y (GAT→TAT) | metF → | 5,10‑methylenetetrahydrofolate reductase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,113,332 | 0 | G→T | 13.3% | 3.2 ‑4.5 ‑0.0 | 51 | 610 | metF | 5,10‑methylenetetrahydrofolate reductase |
Reads supporting (aligned to +/- strand): new base (6/1): ref base (14/30): total (20/31) | ||||||||||
Fisher's exact test strand distribution p-value = 1.10e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.45e-01 |
TGCGTTTTCGTGACCGCTGTGTATCGGCGGGCATTGATGTGGAAATTATTCCGGGAATTTTGCCGGTATCT > REL606/4113297‑4113367
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tGCGTTTTCGTGACCGCTGTGTATCGGCGGGCATTg < 1:504594/36‑1 (MQ=255)
tGCGTTTTCGTGACCGCTGTGTATCGGCGGGCATTg < 1:3463949/36‑1 (MQ=255)
gCGTTTTCGTGACCGCTGTGTATCGGCGGGCATTGa < 1:6609378/36‑1 (MQ=255)
cGTTTTCGTGACCGCTGTGTATCGGCGGGCATTGAt < 1:4018316/36‑1 (MQ=255)
cGTTTTCGTGACCGCTGTGTATCGGCGGGCATTGAt < 1:3753270/36‑1 (MQ=255)
tttCGTGACCGCTGTGTATCGGCGGGCATTTAtgtg > 1:2424979/1‑36 (MQ=255)
tttCGTGACCGCTGTGTATCGGCGGGCATTGAtgtg < 1:7167290/36‑1 (MQ=255)
ttCGTGACCGCTGTGTATCGGCGGGCATTGATGTgg < 1:4883260/36‑1 (MQ=255)
tCGTGACCGCTGTGTATCGGCGGGCATTGTTGTggg > 1:3835609/1‑35 (MQ=255)
tCGTGACCGCTGTGTATCGGCGGGCATTGATGTGGa < 1:1102967/36‑1 (MQ=255)
cGTGACCGCTGTGTATCGGCGGGCATTGATGTGGaa < 1:7381475/36‑1 (MQ=255)
ttGACCGCTGTGTATCGGCGGGCATTGATGTGGaaa < 1:6912046/35‑1 (MQ=255)
gTGACCGCTGTGTATCGGCGGGCATTGATGTGGaaa < 1:5528936/36‑1 (MQ=255)
tGACCGCTGTGTATCGGCGGGCCTTGATTTTGAAat > 1:2038685/1‑36 (MQ=25)
tGACCGCTGTGTATCGGCGGGCATTGATGTGGAAat > 1:2271571/1‑36 (MQ=255)
tGACCGCTGTGTATCGGCGGGCATTGATGTGGAAat < 1:4996099/36‑1 (MQ=255)
gACCGCTGTGTATCGGCGGGCATTTATGTGGGAatt > 1:5029419/1‑36 (MQ=37)
gACCGCTGTGTATCGGCGGGCATTGATGTGGAAatt < 1:6060707/36‑1 (MQ=255)
gACCGCTGTGTATCGGCGGGCATTGATGTGGAAatt < 1:7420731/36‑1 (MQ=255)
aCCGCTGTGTATCGGCGGGCATTTATGTGGAAatta > 1:6782431/1‑36 (MQ=255)
aCCGCTGTGTATCGGCGGGCATTGATGTGGAAatta < 1:712874/36‑1 (MQ=255)
aCCGCTGTGTATCGGCGGGCATTGATGTGGAAatta < 1:4205611/36‑1 (MQ=255)
ccGCTGTGTATCGGCGGGCATTGATGTGGAAattat < 1:1661919/36‑1 (MQ=255)
cGCTGTGTATCGGCGGGCATTGATGTGGAAattatt < 1:290601/36‑1 (MQ=255)
gCTGTGTATCGGCGGGCATTGATGTGGAAattattt > 1:163746/1‑35 (MQ=255)
gCTGTGTATCGGCGGGCATTGATGTGGAAATTATTc < 1:1059936/36‑1 (MQ=255)
acTGTGTATCGGCGGTCATTGATGTGGAAATTATTc < 1:830695/35‑1 (MQ=255)
tgtgTATCTGCGTGCATTTATGTGGAAATTATTCCg < 1:1809396/36‑1 (MQ=25)
tgtgTATCGGCGGGCATTTATGTGGGAattattttt > 1:4782100/1‑33 (MQ=25)
tgtgTATCGGCGGGCATGTGGGTGGGAATTATTTCg > 1:6427492/1‑36 (MQ=9)
gtgtATCGGCGGGCATTGATGTGGAAATTATTCCgg < 1:5779661/36‑1 (MQ=255)
gtATCGGCGGGGATTGATGTGGGAATTATTACgggc > 1:1077609/1‑35 (MQ=21)
gtATCGGCGGGCATTGATGTGTAAATTATTCCGGGa < 1:5132458/36‑1 (MQ=255)
gtATCGGCGGGCATTGATGTGGAAATTATTCCGGGa < 1:4934293/36‑1 (MQ=255)
gtATCGGCGGGCATTGATGTGGAAATTATTCCGGGa < 1:3973436/36‑1 (MQ=255)
tATCGGCGGGCATTTATTTGGGAATTATTCCGGGaa > 1:6907281/1‑36 (MQ=25)
tATCGGCGGGCATTGATGTGGAAATTATTCCGGGaa < 1:5605944/36‑1 (MQ=255)
aTCGGCGGGCATTGATGTGGAAATTATTCCGGGAAt < 1:2934008/36‑1 (MQ=255)
tCGGCGGGCATTGATGTGGAAATTATTCCGGGAAtt > 1:3624922/1‑36 (MQ=255)
cggcggGCATTGATGTGGAAATTATTCCGGGAAttt < 1:1829496/36‑1 (MQ=255)
cggcggGCATTGATGTGGAAATTATTCCGGGAAttt > 1:2990009/1‑36 (MQ=255)
ggcggGCATTGATGTGGAAATTATTCCGGGAAtttt > 1:613374/1‑36 (MQ=255)
gcggGCATTGATGTGGAAATTATTCCGGGAATTTTg < 1:7454030/36‑1 (MQ=255)
gggCATTGATGTGGAAATTATTCCGGGAATTTTGcc < 1:6256585/36‑1 (MQ=255)
gggCATTGATGTGGAAATTATTCCGGGAATTTTGcc < 1:251745/36‑1 (MQ=255)
gggCATTGATGTGGAAATTATTCCGGGAATTTTGcc > 1:6416048/1‑36 (MQ=255)
ggCATTGATGTGGAAATTATTCCGGGAATTTTGCCg > 1:383351/1‑36 (MQ=255)
gCATTGATGTGGAAATTATTCCGGGAATTTTGCCgg > 1:6316026/1‑36 (MQ=255)
cATTGATGTGGAAATTATTCCGGGAATTTTGCCGGt < 1:3329801/36‑1 (MQ=255)
cATTGATGTGGAAATTATTCCGGGAATTTTGCCGGt > 1:4460062/1‑36 (MQ=255)
cATTGATGTGGAAATTATTCCGGGAATTTTGCCGGt > 1:3894244/1‑36 (MQ=255)
ttGATGTGGAAATTATTCCGGGAATTTTGCCGGTAt > 1:7369161/1‑36 (MQ=255)
tGATGTGGAAATTATTCCGGGAATTTTGCCGGTATc < 1:5829627/36‑1 (MQ=255)
gATGTGGAAATTATTCCGGGTATTTTGCCGGTATCt > 1:7878214/1‑36 (MQ=255)
gATGTGGAAATTATTCCGGGAATTTTGCCGGTATCt < 1:1755103/36‑1 (MQ=255)
gATGTGGAAATTATTCCGGGAATTTTGCCGGTATCt < 1:5721220/36‑1 (MQ=255)
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TGCGTTTTCGTGACCGCTGTGTATCGGCGGGCATTGATGTGGAAATTATTCCGGGAATTTTGCCGGTATCT > REL606/4113297‑4113367
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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