Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,911,966 | Δ1 bp | 26.1% | intergenic (‑167/‑156) | yifB ← / → ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,911,966 | 0 | T→. | 26.1% | 19.6 0.0 ‑0.1 | 23 | intergenic (‑167/‑156) | yifB/ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (2/15): total (2/21) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.66e-01 |
ACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACA > REL606/3911931‑3911999
|
aCGAGGAAGGGAACAACATTCATACTGAAATTGAAt < 1:3091158/36‑1 (MQ=255)
gAGGAAGGGAACAACATTCATACTGAAATTGAAttt > 1:1833122/1‑36 (MQ=255)
aaGGGAACAACATTCATACTGAAATTGAAttttttt < 1:3171777/36‑1 (MQ=255)
aGGTAACAGCATTCATACTGAAATTGAAttttttcg < 1:5929105/36‑3 (MQ=25)
aGGGAACAACATTCATACTGAAATTGAATTTTTTtc < 1:2156440/36‑1 (MQ=255)
aacaacATTCATACTGAAATTGAATTTTTTtcactc < 1:6891450/36‑1 (MQ=255)
acaacaTTCATACTGAAATTGAATTTTTTtcactca < 1:4956491/36‑1 (MQ=255)
acaacaTTCATACTGAAATTGAA.TTTTTtcactcac < 1:1299665/36‑1 (MQ=37)
aaaacaTTCATACTGAAATTGAA.TTTTTtcactcac < 1:7579796/34‑1 (MQ=37)
caacaTTCATACTGAAATTGAA.TTTTTTcactcact < 1:1757060/36‑1 (MQ=37)
aaacaTTCATACTGAAATTGAATTTTTTtcactcac < 1:1778208/35‑1 (MQ=255)
aacaTTCATACTGAAATTGAATTTTTTTcactcact < 1:3261338/36‑1 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTCACTCACtat < 1:7478651/36‑1 (MQ=255)
caTTCATACTGAAATTGAATTTTTTTCACTCACtat < 1:3253909/36‑1 (MQ=255)
aTTCATACTGAAATTGAATTTTTTTCACTCACtatt < 1:7642510/36‑1 (MQ=255)
ttCATACTGAAATTGAA.TTTTTTCACTCACtatttt < 1:3748270/36‑1 (MQ=37)
tCATACTGAAATTGAATTTTTTTCACTCACtatttt > 1:6661237/1‑36 (MQ=255)
tCATACTGAAATTGAATTTTTTTCACTCACtatttt < 1:1281439/36‑1 (MQ=255)
cATACTGAAATTGAATTTTTTTCACTCACtatttta < 1:7146703/36‑1 (MQ=255)
cATACGGAAATTGAA.TTTTTTCACTCACtattttat < 1:2942732/36‑1 (MQ=25)
aTACTGAAATTGAATTTTTTTCACTCACtattttat < 1:7399524/36‑1 (MQ=255)
cTGAAATTGAATTTTTTTCACTCACTattttatttt < 1:1427854/36‑1 (MQ=255)
aaaTTGAATTTTTTTCACTCACTATTTTATTTTTaa < 1:6330867/36‑1 (MQ=255)
aaTTGAATTTTTTTCACTCACTATTTTATTTTTaaa < 1:6261067/36‑1 (MQ=255)
ttGAATTTTTTTCACTCACTATTTTATTTTTaaaaa < 1:4026996/36‑1 (MQ=255)
ttGAA.TTTTTTCACTCACTATTTTATTTTTaaaaaa < 1:4614293/36‑1 (MQ=37)
aaTTTTTTTCACTCACTATTTTATTTTTAAAAaaca > 1:5396752/1‑36 (MQ=255)
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ACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACA > REL606/3911931‑3911999
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 35 ≤
ATCG
< 37 ≤
ATCG
|