New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 78449026 (0.460)3 (0.050) 3/64 NT 9.2% coding (359/2262 nt) ybhJ predicted hydratase
?REL606 3912266 = 33 (0.530)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

TTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  >  REL606/3912231‑3912299
                                   |                                 
ttAACGAACTAAGACCCCCGCACCGAAAGGTCCggg                                   <  1:1988528/36‑1 (MQ=255)
ttAACGAACTAAGACCCCCGCACCGAAAGGTCCggg                                   <  1:2372498/36‑1 (MQ=255)
 tttttggtttatcggcggcccagcgttatggcgggg                                  >  1:7955109‑M2/35‑36 (MQ=255)
 tAACGAACTAAGACCCCCGCACCGAAAGGTCCgggg                                  >  1:8396971/1‑36 (MQ=255)
  aaCGAACTAAGACCCCCGCACCGAAAGGTCCggggg                                 <  1:2411471/36‑1 (MQ=255)
    cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt                               <  1:1165222/36‑1 (MQ=255)
     gAACTAAGACCCCCGCACCGAAAGGTCCGAGGGttt                              >  1:7432572/1‑36 (MQ=255)
     gAACTAAGACCCCCGCACCGAAAGGACCGGTGGttt                              >  1:2770617/1‑36 (MQ=38)
      aaCTAAGGCCCCCGCACCGAAAGGTCCGGGGGtttt                             <  1:3042932/36‑1 (MQ=255)
      aaCTAAGACCCCCGCAGCGAAAGGTCCGGGGGtttt                             <  1:5184148/36‑1 (MQ=255)
       aCTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt                            <  1:2867137/36‑1 (MQ=255)
        cTAAGGCCCCCGCACCGAAAGGTCCGGGGGtttttt                           <  1:4064038/36‑1 (MQ=255)
        cTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt                           <  1:4065944/36‑1 (MQ=255)
        cTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt                           >  1:466216/1‑36 (MQ=255)
         ttatcggcggcccagcgttttggcggGGGttttttt                          >  1:8290936‑M2/27‑36 (MQ=255)
         tAAGACCCCCGCACCGAAAGGTCCGGGGGttttttt                          <  1:4158785/36‑1 (MQ=255)
          tatcggcggccccgcgttatggcggGGGtttttttt                         >  1:1465031‑M2/26‑36 (MQ=255)
          aaGACCCCCGCACCGAAAGGTCCGGGGGtttttttt                         <  1:7344704/36‑1 (MQ=255)
             aCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                      <  1:6670321/36‑1 (MQ=255)
             aCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                      <  1:6842802/36‑1 (MQ=255)
              cccccGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                     <  1:518565/36‑1 (MQ=255)
               ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                    <  1:7161182/36‑1 (MQ=255)
               ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                    <  1:7165059/36‑1 (MQ=255)
               ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                    >  1:73749/1‑36 (MQ=255)
               ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                    <  1:2253486/36‑1 (MQ=255)
                cccGCACCGAAAGTTCCGGGGGTTTTTTTTGACCtt                   <  1:677096/36‑1 (MQ=255)
                 ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa                  >  1:2065027/1‑36 (MQ=255)
                   gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                >  1:516791/1‑36 (MQ=255)
                   gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                >  1:702/1‑36 (MQ=255)
                    cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa               >  1:548560/1‑36 (MQ=255)
                    cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa               <  1:4890250/36‑1 (MQ=255)
                    cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa               <  1:4715545/36‑1 (MQ=255)
                       cGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa            >  1:6449486/1‑36 (MQ=255)
                       cGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa            <  1:8448523/36‑1 (MQ=255)
                        gAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt           <  1:5871306/36‑1 (MQ=255)
                            ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc       <  1:3740013/36‑1 (MQ=255)
                            ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc       >  1:198120/1‑36 (MQ=255)
                             gTCCGGGGGTTTTTTTTGACGTTAAAAACATAACCg      >  1:7442192/1‑36 (MQ=255)
                             gTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg      >  1:2974731/1‑36 (MQ=255)
                              tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCga     >  1:1627149/1‑36 (MQ=255)
                                cggGGGTTTTTTTTGACCTTAAAAACATAACCgagg   >  1:4118219‑M2/4‑36 (MQ=255)
                                 ggGGGTTTTTTTTGACCTTAAAAACATAACCgagga  <  1:642736‑M2/34‑1 (MQ=255)
                                 ggGGGTTTTTTTTGACCTTAAAAACATAACCgagga  >  1:4398470‑M2/3‑36 (MQ=255)
                                   |                                 
TTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGA  >  REL606/3912231‑3912299

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG