Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,139,261 | +G | 5.7% | coding (911/918 nt) | oxyR → | DNA‑binding transcriptional dual regulator |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,139,261 | 1 | .→G | 5.7% | 3.1 ‑1.5 ‑0.1 | 35 | coding (911/918 nt) | oxyR | DNA‑binding transcriptional dual regulator |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (15/18): total (17/18) | ||||||||||
Fisher's exact test strand distribution p-value = 2.29e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.01e-01 |
AATGGATGGCCATTTCGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCTACCCGATAGGC > REL606/4139226‑4139295
|
aaTGGATGGCCATTTCGATAAAGTTTTAAAACAGGc > 1:1708044/1‑36 (MQ=255)
aaTGGATGGCCATTTCGATAAAGTTTTAAAACAGGc < 1:1947533/36‑1 (MQ=255)
aaTGGATGGCCATTTCGATAAAGTTTTAAAACAGGc > 1:2118862/1‑36 (MQ=255)
aaTGGATGGCCATTTATAGAAAGATTTAAAACACGc > 1:1387781/1‑36 (MQ=16)
tggatggCCATTTCGATAAAGTTTTAAAACAGGC.gg > 1:2926123/1‑36 (MQ=255)
gatggCCATTTCGATAAAGTTTTAAAACAGGC.gggt > 1:3924901/1‑34 (MQ=255)
gagggCCATTTCCATAAAGTGTTAAAACAGGC.GG.tt > 1:3187345/4‑36 (MQ=25)
tggCCATTTCGATAAAGTTTTAAAACAGGC.GG.TTTa < 1:692279/36‑1 (MQ=255)
ggCCATTTCGATAAAGTTTTAAAACAGGC.GG.gtttt > 1:835079/1‑34 (MQ=25)
ggCCATTTCGATAAAGTTTTAAAACAGGC.GG.GTTat > 1:4103213/1‑35 (MQ=255)
cATTTCGATAAAGTTTTAAAACAGGC.GG.TTTAAAcc < 1:996112/36‑1 (MQ=255)
aTTTCGATAAAGTTTTAAAACAGGC.GG.TTTTAAACg > 1:1942063/1‑36 (MQ=37)
aTTTCGATAAAGTTTTAAAACAGGC.GG.TTTAAAACg > 1:610073/1‑36 (MQ=255)
tttCGATAAAGTTTTAAAACATGC.GGTTTTAAAcct > 1:4946915/1‑35 (MQ=21)
tttCGATAAAGTTTTAAAACAGGCGGG.TTTaaaact > 1:3066049/1‑33 (MQ=25)
tttCGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGt < 1:39085/36‑1 (MQ=255)
ttCGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGtt < 1:3690037/36‑1 (MQ=255)
tCGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGttt < 1:3244005/36‑1 (MQ=255)
cGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGTTTa < 1:4445382/36‑1 (MQ=255)
gATAAAGTTTTAAAACAGGCGGG.TTTAAAGCTtttt > 1:2706428/1‑35 (MQ=16)
gATAAAGTTTTAAAACAGGC.GG.TTTAAACCGTTTaa < 1:2792730/36‑1 (MQ=255)
tAAAGTTTTAAAACAGGC.GG.TTTAAACCCTTTAACg > 1:5789111/1‑36 (MQ=255)
aaaGTTTTAAAACAGGC.GGTTTTAAACCCTTAaatc > 1:3626338/1‑34 (MQ=12)
aaGTTTTAAAACAGGC.GG.TTTAAACCGTTTAACGCa < 1:2809624/36‑1 (MQ=255)
aaGTTTTAAAACAGGC.GG.TTTAAACCGTTTAACGCa < 1:2738895/36‑1 (MQ=255)
aGTTTTAAAACAGGC.GG.TTTAAACCGTTTAACGCAg < 1:4205159/36‑1 (MQ=255)
ttttAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCt < 1:846716/36‑1 (MQ=255)
ttttAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCt < 1:1269026/36‑1 (MQ=255)
ttttAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCt < 1:2361602/36‑1 (MQ=255)
ttAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCTAc < 1:4419617/36‑1 (MQ=255)
ttAAAACAGGC.GG.GTTTAAACGTTTTACCCAGCttc > 1:4141570/1‑34 (MQ=9)
aaaaCAGGC.GG.TTTAAACCGTTTAACGCAGCTAccc < 1:3564178/36‑1 (MQ=255)
aaaaCAGGC.GG.TTTAAAAAGCTTAAATCAGCTAccc > 1:2974480/1‑36 (MQ=16)
aaCAGGC.GG.TTTTAACAGTTTAAAGCAGGTAcccca > 1:1574980/1‑34 (MQ=16)
aaCAGGC.GG.TTTAAACCGTTTTTGGCAGCTTACCGa > 1:4366107/1‑36 (MQ=12)
aaaGGC.GG.TTTAAACCGTTTAACGCAGCTACCCGAt < 1:2989899/34‑1 (MQ=255)
aCAGGC.GG.TTTAAACCGTTTAACGCAGCTACCCGAt < 1:123230/36‑1 (MQ=255)
aGGC.GG.TTTAAACCGTTTAACGCAGCTACCCGATAg < 1:5302663/36‑1 (MQ=255)
aGGC.GG.TTTAAACCGTTTAACGCAGCTACCCCATAg > 1:4744011/1‑36 (MQ=255)
ggC.GG.TTTAAACCGTTTAACGAAGCTACCCGATAgg > 1:3919636/1‑36 (MQ=255)
gC.GG.TTTAAACCGTTTAACGCAGCTACCCGATAGGc > 1:5550607/1‑36 (MQ=255)
|
AATGGATGGCCATTTCGATAAAGTTTTAAAACAGGC.GG.TTTAAACCGTTTAACGCAGCTACCCGATAGGC > REL606/4139226‑4139295
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|