Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,192,978 | G→C | 100% | intergenic (+146/+147) | rrfE → / ← yjaB | 5S ribosomal RNA/predicted acetyltransferase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,192,978 | 0 | G→C | 100.0% | 15.2 | 11 | intergenic (+146/+147) | rrfE/yjaB | 5S ribosomal RNA/predicted acetyltransferase |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (5/0): total (5/6) | ||||||||||
Fisher's exact test strand distribution p-value = 2.16e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATAAAGCG > REL606/4192964‑4193011
|
gTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCa > 1:6304094/1‑36 (MQ=38)
gggCGGACAGAACCCCCGCCATAAACTGCCAGGCAt < 1:5450019/35‑1 (MQ=14)
ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATc > 1:6484110/1‑36 (MQ=38)
ggggAAGCACCCCCGCCATAAACTGCCAGGCATCaa < 1:6414575/35‑1 (MQ=14)
gggCAGGACGCCCGCCATAAACTGCCAGGCATCaaa > 1:7055441/1‑36 (MQ=38)
gggAAGAACCCCCGCCATAAACTGCCAGGCATCaaa < 1:1574653/36‑1 (MQ=14)
ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAAt > 1:2786987/1‑36 (MQ=38)
cAGGACCACCGAGATAAACTGCCAGGCATCAAATaa < 1:1708875/36‑1 (MQ=9)
gagACCCCCGCCATAAACTGCCAGGCATCAAATaaa < 1:572932/34‑1 (MQ=17)
gACCCCCGCCATAAACTGCCAGGCATCAAATAAAGc < 1:3661669/36‑1 (MQ=255)
aCGCCCGCCATAAACTGCCAGGGATCAAATAAAGCg > 1:5458434/1‑36 (MQ=255)
|
GTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATAAAGCG > REL606/4192964‑4193011
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 10 ≤
ATCG
< 25 ≤
ATCG
< 37 ≤
ATCG
|