Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 88,137 | A→G | 8.9% | intergenic (+21/‑297) | leuO → / → ilvI | leucine transcriptional activator/acetolactate synthase III large subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 88,137 | 0 | A→G | 8.9% | 2.9 ‑1.9 ‑0.3 | 45 | intergenic (+21/‑297) | leuO/ilvI | leucine transcriptional activator/acetolactate synthase III large subunit |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (17/23): total (17/28) | ||||||||||
Fisher's exact test strand distribution p-value = 1.47e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.64e-01 |
ATTTGCAAACGCTAACTGATTGCAGAATAGGTCAGACATGAATGTCTGGTTTATTCTGCATTTTTTAT > REL606/88102‑88169
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aTTTGCAAACGCTAACTGATTGCAGAATAGGTCAGa > 1:2378495/1‑36 (MQ=255)
tttGCAAACGCTAACTGATTGCAGAATAGGTCAGAc < 1:102885/36‑1 (MQ=255)
tttGCAAACGCTAACTGATTGCAGAATAGGTCAGAc > 1:7365567/1‑36 (MQ=255)
tttGCAAACGCTAACTGATCGCAGAATAGGTCAGAc < 1:4098159/36‑1 (MQ=255)
ttGCAAACGCTAACTGATTGCAGAATAGGGCAGACa > 1:482840/1‑36 (MQ=255)
tGCAAACGCTAACTGATTGCAGAATAGGTCAGCCAt < 1:745332/36‑1 (MQ=255)
gCAAACGCTAACTGATTGCAGAATAGGTCAGACATg > 1:7731386/1‑36 (MQ=255)
gCAAACGCTAACTGATTGCAGAATAGGTCAGACATg > 1:1774329/1‑36 (MQ=255)
gCAAACGCTAACTGATTGCAGAATAGGTCAGACATg > 1:103061/1‑36 (MQ=255)
cAAACGCTAACTGATTGCAGAATAGGTCAGACATGa < 1:4530520/36‑1 (MQ=255)
aaCGCTAACTGATTGCAGCATAGGTCAGACATGAAt < 1:7413748/36‑1 (MQ=255)
aaCGCTAACTGATTGCAGAATAGGGCAGACATGAAt > 1:5811040/1‑36 (MQ=255)
aaCGCTAACTGATTGCAGAATAGGACAGACATGAAt > 1:5736267/1‑36 (MQ=255)
gCTAACTGATTGCAGAATAGGTCAGGCATGAATGTc < 1:2008943/36‑1 (MQ=255)
cTAACTGATTGCAGAATAGGTCAGGCATGAATGTCt < 1:7322113/36‑1 (MQ=255)
cTAACTGATTGCAGAATAGGTCAGACATGAATGTCt < 1:361788/36‑1 (MQ=255)
cTAACTGATTGCAGAATAGGTCAGACATGAATGTCt < 1:3571346/36‑1 (MQ=255)
aaCTGATTGCAGAATAGGTCAGACATGAATGTCTgg > 1:1277266/1‑36 (MQ=255)
aaCTGATTGCAGAATAGGTCAGACATGAATGTCTgg < 1:6200159/36‑1 (MQ=255)
aCTGATTGCAGAATAGGTCAGACATGAATGTCTGGt < 1:5070592/36‑1 (MQ=255)
cTGATTGCAGAATAGGTCAGACATGAATGTCTGGtt < 1:2137032/36‑1 (MQ=255)
tGATTGCAGAATAGGTCAGACATGAATGTCTGGttt > 1:1627866/1‑36 (MQ=255)
gATTGCAGAATAGGTCAGACATGAATGTCTGGTTTa < 1:859177/36‑1 (MQ=255)
gATTGCAGAATAGGTCAGACATGAATGTCTGGTTTa < 1:4029636/36‑1 (MQ=255)
aTTGCAGAATAGGTCAGACATGAATGTCTGGTTTAt > 1:7321903/1‑36 (MQ=255)
ttGCAGAATAGGTCAGGCATGAATGTCTGGTTTAtt < 1:6213382/36‑1 (MQ=255)
ttGCAGAATAGGTCAGACATGAATGTCTGGTTTAtt < 1:6382649/36‑1 (MQ=255)
ttGCAGAATAGGTCAGACATGAATGTCTGGTTTAtt < 1:7858463/36‑1 (MQ=255)
ttGCAGAATAGGTCAGACATGAATGTCTGGTTTAtt < 1:1437963/36‑1 (MQ=255)
ttGCAGAATAGGTCAGACATGAATGTCTGGTTTAtt < 1:7638690/36‑1 (MQ=255)
tGCAGAATAGGTCAGACATGAATGTCTGGTTTATTc < 1:5424614/36‑1 (MQ=255)
tGCAGAATAGGTCAGACATGAATGTCTGGTTTATTc > 1:2341867/1‑36 (MQ=255)
gCAGAATAGGTCAGACATGAATGTCTGGTTTATTCt > 1:7733704/1‑36 (MQ=255)
gCAGAATAGGTCAGACATGAATGTCTGGTTTATTCt < 1:3654221/36‑1 (MQ=255)
aGAATAGGTCAGACATGAATGTCTGGTTTATTCTGc > 1:6455468/1‑36 (MQ=255)
gAATAGGTCAGACATGAATGTCTGGTTTATTCTGCa > 1:4674742/1‑36 (MQ=255)
aaTAGGTCAGACATGAATGTCTGGTTTATTCTGCAt < 1:1503840/36‑1 (MQ=255)
aTAGGTCAGACATGAATGTCTGGTTTATTCTGCAtt < 1:972473/36‑1 (MQ=255)
ggTCAGACATGAATGTCTGGTTTATTCTGCAttttt < 1:7711401/36‑1 (MQ=255)
ggTCAGACATGAATGTCTGGTTTATTCTGCAttttt > 1:1216450/1‑36 (MQ=255)
gTCAGACATGAATGTCTGGTTTATTCTGCAtttttt < 1:7632689/36‑1 (MQ=255)
gTCAGACATGAATGTCTGGTTTATTCTGCAtttttt < 1:5811985/36‑1 (MQ=255)
gTCAGACATGAATGTCTGGTTTATTCTGCAtttttt > 1:5757570/1‑36 (MQ=255)
tCAGACATGAATGTCTGGTTTATTCTGCATTTTTTa < 1:7360895/36‑1 (MQ=255)
cAGGCATGAATGTCTGGTTTATTCTGCATTTTTTAt < 1:7859840/36‑1 (MQ=255)
cAGACATGAATGTCTGGTTTATTCTGCATTTTTTAt > 1:5791474/1‑36 (MQ=255)
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ATTTGCAAACGCTAACTGATTGCAGAATAGGTCAGACATGAATGTCTGGTTTATTCTGCATTTTTTAT > REL606/88102‑88169
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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