Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,893,550 | +G | 52.5% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,893,550 | 1 | .→G | 52.5% | 122.4 ‑3.9 0.0 | 59 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): new base (10/21): ref base (18/10): total (28/31) | ||||||||||
Fisher's exact test strand distribution p-value = 1.94e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
|
tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCa < 1:3959775/36‑1 (MQ=255)
aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..g < 1:6432068/36‑1 (MQ=255)
tCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..gg > 1:1169334/1‑35 (MQ=255)
tCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..gg < 1:566442/36‑2 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggg < 1:2284526/36‑3 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggg < 1:1568981/36‑3 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCCA..GAc > 1:5062583/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggga < 1:865649/36‑4 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..GACt > 1:4669058/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..GACt > 1:5910371/1‑36 (MQ=255)
gAACTGGGTACTCAGGGCGAAATCTAACGCCA..ggac > 1:1373942/1‑33 (MQ=37)
aaCTGGGTACTCAGGTCGAAATCTAACGCCA..GACTg > 1:4082048/1‑36 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCCA..GACTGt > 1:5392904/1‑36 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCCAG.GACTGt < 1:3921093/36‑1 (MQ=37)
cTGGGTACTCAGGTCGAAATCTAACGCCAG.GACTGt < 1:3345186/36‑1 (MQ=37)
tGGGTACTCAGGTCGAAATCTAACGCCAG.GACTGTa > 1:1488490/1‑36 (MQ=37)
tGGGTACTCAGGTCGAAATCTAACGCCAG.GACTGTa > 1:5857391/1‑36 (MQ=37)
tGGGTACTCAGGTCGAAATCTAACGCCA..GACTGTAc < 1:174289/36‑1 (MQ=255)
ggTCCTCAGGTCGAAAACTAACGCCAG.GACTGTACt < 1:5164588/36‑1 (MQ=16)
ggTACTCAGGTCGAAATCTAACGCCAG.GACTGTACt < 1:7885861/36‑1 (MQ=37)
ggTACTCAGGTCGAAATCTAACGCCAG.GACTGTACt < 1:1435460/36‑1 (MQ=37)
ggTACTCAGGTCGAAATCTAACGCCA..GACTGTACTg > 1:1229646/1‑36 (MQ=255)
ggTACTCAGGTCGAAATCTAACGCCA..GACTGTACTg < 1:7623076/36‑1 (MQ=255)
gTACTCAGGACGAAATCTAACGCCAG.GACTGTACTg < 1:3235028/36‑1 (MQ=25)
tACTCAGGTCGAAATCTAACGCCAG.GACTGTACTGc < 1:5682266/36‑1 (MQ=37)
cTCAGGTCGAAATCTAACGCCAG.GACTGTACTGCAc < 1:3132448/36‑1 (MQ=37)
tCAGGTCGAAATCTAACGCCAGGGACTGTACTGCAc < 1:1220785/36‑1 (MQ=25)
tCAGGTCGAAATCTAACGCCAGGGACTGTACTGCAc < 1:4426115/36‑1 (MQ=25)
tCAGGTCGAAATCTAACGCCA..GACTGTACTGCAccc > 1:7750356/1‑36 (MQ=255)
tCAGGTCGAAATCTAACGCCA..GACTGTACTGCAccc > 1:5687016/1‑36 (MQ=255)
cAGGTCGAAATCTAACGCCAG.GACTGTACTGCAccc > 1:1338767/1‑36 (MQ=37)
cAGGTCGAAATCTAACGCCA..GACTGTACTGCACCCa < 1:3541793/36‑1 (MQ=255)
cAGGTCGAAATCTAACGCCA..GACTGTACTGCACCCa < 1:3884614/36‑1 (MQ=255)
cAGGGCGAAATCTAACGCCAG.GACTGTACTGCAccc > 1:4221981/1‑36 (MQ=25)
aGGTCGAAATCTAACGCCA..GACTGTACTGCACCCAt > 1:1668159/1‑36 (MQ=255)
ggTCGAAATCTAACGCCA..GACTGTACTGCACCCAtt < 1:1436699/36‑1 (MQ=255)
ggTCGAAATCTAACGCCA..GACTGTACTGCACCCAtt > 1:464716/1‑36 (MQ=255)
tCGAAATCTAACGCCAGGGACTGTACTGCACCCAtt < 1:3501556/36‑1 (MQ=21)
tCGAAATCTAACGCCAG.GACTGTACTGCACCCAttt < 1:2539491/36‑1 (MQ=25)
tCGAAATCTAACGCCAG.GACTGTACTGCACCCAttt < 1:597603/36‑1 (MQ=25)
tCGAAATCTAACGCCA..GACTGTACTGCACCCAtttt < 1:7091624/36‑1 (MQ=255)
gAAATCTAACGCCAGGGACTGTACTGCACCCAtttt < 1:4414649/36‑1 (MQ=18)
gAAATCTAACGCCA..GACTGTACTGCACCCATTttgt > 1:5988658/1‑36 (MQ=255)
aaTCTAACGCCAGGGACTGTACTGCACCCATTttgt > 1:4000488/1‑36 (MQ=17)
aaTCTAACGCCAG.GACTGTACTGCACCCATTttgtt < 1:1601477/36‑1 (MQ=18)
aaTCTAACGCCA..GACTGTACTGCACCCATTttgttg < 1:1638731/36‑1 (MQ=255)
aaTCTAACGCCA..GACAGGACTGCACACATTttgttg > 1:2066881/1‑36 (MQ=25)
aTCTAACGCCA..GACTGTACTGCACCCATTTTGTTgg > 1:1193553/1‑36 (MQ=255)
aTCTAACGCCA..GACTGTACTGCACCCATTTTGTTgg > 1:6129105/1‑36 (MQ=255)
aTCTAACGCCA..GACTGTACTGCACCCATTTTGTTgg < 1:2037049/36‑1 (MQ=255)
tCTAACGCCAGGGACTGTACTGCACCCATTttgttg < 1:5294812/36‑1 (MQ=14)
tCTAACGCCAG.GACTGTACTGCACCCATTTTGTTgg > 1:3797144/1‑36 (MQ=18)
cTAACGCCAGGGACTGTACTGCACCCATTTTGTTgg < 1:57519/36‑1 (MQ=14)
cTAACGCCAGGGACTGTACTGCACCCATTTTGTTgg > 1:6925174/1‑36 (MQ=14)
cTAACGCCA..GACTGTACTGCACCCATTTTGTTGGAc < 1:1695972/36‑1 (MQ=255)
tAACGCCAG.GACTGTACTGCACCCATTTTGTTgggg > 1:2175791/1‑34 (MQ=17)
tAACGCCAG.GACTGTACTGCACCCATTTTGTTGGAc < 1:3352411/36‑1 (MQ=17)
caCGCCAG.GACTGTACTGCACCCATTTTGTTGGACg < 1:6278421/35‑1 (MQ=14)
aaCGCCAG.GACTGTACTGCACCCATTTTGTTGGACg > 1:4151082/1‑36 (MQ=14)
aaCGCCAG.GACTGTACTGCACCCATTTTGTTGGACg < 1:3975722/36‑1 (MQ=14)
aaCGCCA..GACTGTACTGCACCCATTTTGTTGGACGa > 1:296834/1‑36 (MQ=255)
aCGCCAG.GACTGTACTGCACCCATTTTGTTGGACGa > 1:5554334/1‑36 (MQ=14)
cGCCAG.GACTGTACTGCACCCATTTTGTTGGACGAt < 1:2613995/36‑1 (MQ=11)
gCCA..GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:5497695/1‑36 (MQ=255)
gCCA..GACTGTACTGCACCCAGTTTGTTGGACGATGa > 1:2400344/1‑36 (MQ=255)
ccA..GACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:4751092/36‑1 (MQ=255)
ccA..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:7238705/1‑36 (MQ=255)
a..GACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:1978697/1‑36 (MQ=38)
a..GACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:7419286/36‑1 (MQ=38)
|
TATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|