Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,248,957 | A→T | 93.4% | D764E (GAT→GAA) | infB ← | translation initiation factor IF‑2 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,248,957 | 0 | A→T | 93.4% | 5.3 ‑0.5 ‑0.0 | 61 | 2292 | infB | translation initiation factor IF‑2 |
Reads supporting (aligned to +/- strand): new base (30/27): ref base (3/1): total (33/28) | ||||||||||
Fisher's exact test strand distribution p-value = 6.18e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.54e-01 |
CAATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGC > REL606/3248923‑3248989
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cAATCAGGTTATAGATGACGGAGTAGTAACGCAGAt > 1:4819749/1‑36 (MQ=255)
aaTCAGGTTATAGATGACGGAGTAGTAACGCAGTTc > 1:1592010/1‑36 (MQ=255)
aaTCAGGTTATAGATGACGGAGTAGTAACGCAGTTc > 1:6385111/1‑36 (MQ=255)
aTCAGGTTATAGATGACGGAGTAGTAACGCAGTTcc < 1:6069279/36‑1 (MQ=255)
tCAGGTTATAGATGACGGAGTAGTAACGCAGTTcaa > 1:814068/1‑34 (MQ=38)
tCAGGTTATAGATGACGGAGTAGTAACGCAGTTCCa > 1:5622569/1‑36 (MQ=255)
cAGGTTATAGATGACGGAGTAGTAACGCAGTTCCAg < 1:489058/36‑1 (MQ=255)
cAGGTTATAGATGACGGAGTAGTAACGCAGTTCCAg < 1:8390786/36‑1 (MQ=255)
cAGGTTATAGATGACGGAGTAGTAACGCAGATCCAg > 1:2217421/1‑36 (MQ=255)
ggTTATAGATGACGGAGTAGTATCGCAGTTCCAGGc > 1:5800617/1‑36 (MQ=37)
ggTTATAGATGACGGAGTAGTAACGCAGTTCCAGGc < 1:60049/36‑1 (MQ=255)
ggTTATAGATGACGGAGTAGTAACGCAGTTCCAGGc < 1:1093973/36‑1 (MQ=255)
ggTTATAGATGACGGAGTAGTAACGCAGTTCCAGGc > 1:2340402/1‑36 (MQ=255)
ggTTATAGATGACGGAGTAGTAACGCAGTTCCAGGc > 1:2019034/1‑36 (MQ=255)
ttATAGATGACGGAGTAGTAACGCAGTTCCAGGCtt > 1:2912757/1‑36 (MQ=255)
ttATAGATGACGGAGTAGTAACGCAGTTCCAGGCtt > 1:3053068/1‑36 (MQ=255)
ttATAGATGACGGAGTAGTAACGCAGTTCCAGGCtt > 1:375727/1‑36 (MQ=255)
tataGATGACGGAGTAGTAACGCAGTTCCAGGCttt > 1:3828831/1‑36 (MQ=255)
ataGATGACGGAGTAGTAACGCAGTTCCAGGCTTTc < 1:7344302/36‑1 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTCCAGGCTTTcc > 1:5756357/1‑36 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTCCAGGCTTTcc < 1:6236143/36‑1 (MQ=255)
aGATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCg > 1:5434361/1‑36 (MQ=255)
aGATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCg < 1:1975395/36‑1 (MQ=255)
gATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGc > 1:600454/1‑36 (MQ=255)
gATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGc > 1:1850846/1‑36 (MQ=255)
gATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGc < 1:1951682/36‑1 (MQ=255)
aTGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCt < 1:4840192/36‑1 (MQ=255)
tGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCtt < 1:4067702/36‑1 (MQ=255)
tGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCtt > 1:6611201/1‑36 (MQ=255)
tGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCtt < 1:6807180/36‑1 (MQ=255)
tGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCtt < 1:2357009/36‑1 (MQ=255)
aCGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCa > 1:914480/1‑36 (MQ=255)
aCGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCa > 1:8080544/1‑36 (MQ=255)
aCGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCa > 1:4920265/1‑36 (MQ=255)
cGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCaa > 1:2423516/1‑36 (MQ=255)
ggAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAAt < 1:8324339/36‑1 (MQ=255)
ggAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAAt < 1:4957945/36‑1 (MQ=255)
gAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAATc > 1:7917982/1‑36 (MQ=255)
gAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAATc > 1:7016523/1‑36 (MQ=255)
gAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAATc > 1:1427826/1‑36 (MQ=255)
agtagtAACGCAGTTCCAGGCTTTCCGCTTCAATCa > 1:7421828/1‑36 (MQ=255)
tagtaACGCAGTTCCAGGCTTTCCGCTTCAATCACt < 1:2359648/36‑1 (MQ=255)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCATttt > 1:3875464/1‑36 (MQ=37)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCACttt < 1:250047/36‑1 (MQ=255)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCACttt < 1:5450271/36‑1 (MQ=255)
aaCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTAc < 1:8364691/36‑1 (MQ=255)
aaCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTAc > 1:2694136/1‑36 (MQ=255)
aCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTACg < 1:5328027/36‑1 (MQ=255)
aCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTACg < 1:3589826/36‑1 (MQ=255)
cGCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGt < 1:7657515/36‑1 (MQ=255)
cGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGt > 1:5404642/1‑36 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg > 1:2203265/1‑36 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg < 1:8128774/36‑1 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg < 1:717597/36‑1 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg > 1:5516408/1‑36 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc < 1:7665600/36‑1 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc > 1:6619723/1‑36 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc > 1:6609298/1‑36 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc < 1:4052658/36‑1 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc < 1:4390442/36‑1 (MQ=255)
cAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTGc < 1:8420600/36‑1 (MQ=255)
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CAATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTGC > REL606/3248923‑3248989
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 28 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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