Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 86.1% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =5 (0.110)28 (0.610) 20/52 NT 84.9% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169745 (0.090)34 (0.640) 25/60 NT 87.2% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 113 total aligned reads displayed.

GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007
                                   |                                   
gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                     >  1:2993875‑M1/1‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    >  1:3903499‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    >  1:3597797‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    >  1:5685303‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    <  1:6184195‑M1/2‑1 (MQ=255)
 cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                    >  1:2849934‑M1/1‑36 (MQ=255)
 cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                    >  1:1640640‑M1/1‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:8334341‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   <  1:6095765‑M1/3‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:6906106‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   <  1:2076012‑M1/3‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:2004617‑M1/34‑36 (MQ=255)
  aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                   <  1:6821911‑M1/36‑1 (MQ=255)
   ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                  <  1:6721488‑M1/36‑2 (MQ=255)
   ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                  <  1:7236525‑M1/36‑2 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:6896012‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  <  1:3738810‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:8250249‑M1/33‑36 (MQ=255)
    tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtg                                 >  1:2654816‑M1/1‑34 (MQ=255)
    tctACATGTGTTCAGCATATAGGGAGCCTCGGGTtg                                 <  1:6352216‑M1/36‑3 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTtgt                                <  1:473341‑M1/6‑2 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                >  1:1028636‑M1/31‑36 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                <  1:1971102‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                <  1:7393889‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                >  1:7955434‑M1/31‑36 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                <  1:4521752‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                >  1:1458779‑M1/31‑36 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                <  1:8030530‑M1/6‑1 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               <  1:4558667‑M1/7‑1 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:5360282‑M1/30‑36 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              >  1:7862010‑M1/29‑36 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              >  1:4186223‑M1/29‑36 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              <  1:1980262‑M1/8‑1 (MQ=255)
       aCATGTGTTCAGCATTTAGGGGGCCTCGGGTtgtat                              >  1:6038669‑M1/1‑31 (MQ=255)
       aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                              >  1:5103223‑M1/1‑31 (MQ=255)
       aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                              >  1:2438965‑M1/1‑31 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:5832968‑M1/28‑36 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:722575‑M1/28‑36 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:6128601‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:4367855‑M1/28‑36 (MQ=255)
         aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactt                            >  1:7166903‑M1/1‑29 (MQ=255)
         aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                            >  1:5017926‑M1/1‑29 (MQ=255)
         aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                            <  1:3344851‑M1/36‑8 (MQ=255)
           gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                          <  1:1341657‑M1/12‑1 (MQ=255)
            tgtTCAGCATATAGGGGGCCTCGGGTtgtactgacc                         <  1:7012629‑M1/36‑11 (MQ=255)
            tgtTCAGCATATAGGGGGCCTCGGGTTGATAGTaaa                         <  1:4170698/36‑1 (MQ=255)
             gtTCAGCATATAGGGGGCCTCGGGTtgtactgaccc                        >  1:3311227‑M1/1‑25 (MQ=255)
              ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                       <  1:5817689‑M1/36‑13 (MQ=255)
               aacaaaatgggtgcagtacaGGTTGATAGTAAAata                      >  1:1801789‑M1/21‑36 (MQ=255)
                cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                     <  1:6370962‑M1/36‑15 (MQ=255)
                acaaaatgggtgcagtacaGGTTGATAGTAAAatat                     <  1:1928510‑M1/17‑1 (MQ=255)
                 caaaatgtgtgcagtacaGGTTGATAGTAAAATATc                    >  1:1189810‑M1/19‑36 (MQ=255)
                 caaaatgggtgcagtacaGTTTGATAGTAAAATATc                    >  1:180869‑M1/19‑36 (MQ=255)
                 caaaatgggtgcagtacaGGTTGATAGTAAAATATc                    <  1:2489396‑M1/18‑1 (MQ=255)
                 caaaatgggtgcagtacaGGTTGATAGTAAAATATc                    <  1:3522247‑M1/18‑1 (MQ=255)
                 aGCATATAGGGGGCCTCGGGTtgtactgaccccaaa                    >  1:2436732‑M1/1‑21 (MQ=255)
                  gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                   >  1:1869302‑M1/1‑20 (MQ=255)
                  gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCa                   <  1:4006084/36‑1 (MQ=255)
                  gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCa                   <  1:2040389/36‑1 (MQ=255)
                   cATATAGGGGGCCTCGGGTtgtactgaccccaaaaa                  <  1:7217534‑M1/36‑18 (MQ=255)
                    atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                 <  1:6363243‑M1/36‑19 (MQ=255)
                    atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                 <  1:8127818‑M1/36‑19 (MQ=255)
                    atatAGGGGGCCTCGGGTTGATAGTAAAATATCACt                 <  1:2357285/36‑1 (MQ=255)
                     tataGGGGGCCTCGGGTtgtactgaccccaaaaagt                >  1:2833562‑M1/1‑17 (MQ=255)
                     atgggtgcagtacaGGTTGATAGTAAAATATCACTc                >  1:1508927‑M1/15‑36 (MQ=255)
                      tgggtgcagtacaGGTTGATAGTAAAATATCACTCg               <  1:7209542‑M1/23‑1 (MQ=255)
                      ataGGGGGCCTCGGGTtgtactgaccccaaaaagtt               <  1:7594217‑M1/36‑21 (MQ=255)
                      ataGGGGGCCTCGGGTtgtactgaccccaaaaagtt               >  1:917110‑M1/1‑16 (MQ=255)
                       taGGGGGCCTCGGGTtgtactgaccccaaaaagttg              <  1:8046781‑M1/36‑22 (MQ=255)
                       gggtgcagtacaGGTTGATAGTAAAATATCACTCgg              <  1:5034331‑M1/24‑1 (MQ=255)
                        ggtgcagtacaGGTTGATAGTAAAATATCACTCggg             >  1:889170‑M1/12‑36 (MQ=255)
                        ggtgcagtacaGGTTGATAGTAAAATATCACTCggg             >  1:6790997‑M1/12‑36 (MQ=255)
                        aGGGGGCCTCGGGTtgtactgaccccaaaaagttgg             <  1:3944373‑M1/36‑23 (MQ=255)
                         gtggagtacaGGTTGATAGTAAAATATCACTCgggg            >  1:5486160‑M1/11‑36 (MQ=255)
                         gtgcagtacaGGTTGATAGTAAAATATCACTCgggg            <  1:856367‑M1/26‑1 (MQ=255)
                         gggggCCTCGGGTtgtactgaccccaaaaagttgga            <  1:7543980‑M1/36‑24 (MQ=255)
                          tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc           >  1:6331631‑M1/10‑36 (MQ=255)
                          tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc           <  1:3136500‑M1/27‑1 (MQ=255)
                          ggggCCTCGGGTtgtactgaccccaaaaagttggac           >  1:1450183‑M1/1‑12 (MQ=255)
                           gcagtacaGGTTGATAGTAAAATATCACTCGGGGCt          <  1:8098224‑M1/28‑1 (MQ=255)
                             gCCTCGGGTtgtactgaccccaaaaagctggacagt        >  1:6850397‑M1/1‑9 (MQ=255)
                             agtacaGGTTGATAGTAAAATATCACTCGGGGCttt        >  1:8154607‑M1/7‑36 (MQ=255)
                              ccTCGGGTtgtactgaccccataaagttggacagtt       <  1:1664532‑M1/36‑29 (MQ=255)
                              ccTCGGGTtgtactgaccccaaaaagttggacagtt       >  1:3765443‑M1/1‑8 (MQ=255)
                               tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc      >  1:7588337‑M1/5‑36 (MQ=255)
                               tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc      <  1:3844061‑M1/32‑1 (MQ=255)
                               cTCGGGTtgtactgaccccaaaaagttggacagtta      >  1:2080494‑M1/1‑7 (MQ=255)
                               cTCGGGTtgtactgaccccaaaaagttggacagtta      >  1:4628017‑M1/1‑7 (MQ=255)
                                tCGGGTtgtactgaccccaaaaagttggacagttaa     <  1:6946702‑M1/36‑31 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     >  1:6126712‑M1/4‑36 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     >  1:2354210‑M1/4‑36 (MQ=255)
                                 caGGTTGATAGTAAAATATCACTCGGGGCTTTtctc    <  1:4451953‑M1/34‑1 (MQ=255)
                                 cGGGTtgtactgaccccaaaaagttggacagttaaa    >  1:5135836‑M1/1‑5 (MQ=255)
                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   <  1:5017033‑M1/35‑1 (MQ=255)
                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   <  1:4237617‑M1/35‑1 (MQ=255)
                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   <  1:6641158‑M1/35‑1 (MQ=255)
                                   ggTtgtactgaccccaaaaagtttgacagttaaaca  <  1:5754725‑M1/36‑34 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:5212321‑M1/1‑3 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:7003265‑M1/1‑3 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:5810141‑M1/1‑3 (MQ=255)
                                   |                                   
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG