Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 904,176 | +C | 6.8% | coding (249/369 nt) | ECB_00850 → | putative regulator of late gene expression |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 904,176 | 1 | .→C | 6.8% | 3.5 ‑3.6 0.0 | 44 | coding (249/369 nt) | ECB_00850 | putative regulator of late gene expression |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (30/11): total (30/14) | ||||||||||
Fisher's exact test strand distribution p-value = 2.75e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TACACGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTATTACCAC > REL606/904141‑904211
|
tACACGGAAATGCCAGTGAAAGTCAGTGGCTTTaaa < 1:2903234/36‑1 (MQ=255)
tACACGGAAATGCCAGTGAAAGTCAGGGGCTTTaaa > 1:2242138/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c > 1:5527300/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c > 1:3891497/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c < 1:597402/36‑1 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c > 1:409521/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c > 1:7409423/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c < 1:7175841/36‑1 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca > 1:3768563/1‑36 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca > 1:3522170/1‑36 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca > 1:2674939/1‑36 (MQ=255)
acGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAg > 1:2686663/1‑36 (MQ=255)
acGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAg > 1:922185/1‑36 (MQ=255)
cGGAAATGCCAGTGAAAGTTAGTCGCTTTTAA.GAGc > 1:4021069/1‑36 (MQ=19)
cGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGc > 1:641717/1‑36 (MQ=255)
cGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGc > 1:8129577/1‑36 (MQ=255)
cGGAAAGGCCAGTGAAAGGCAGTGGCTTTAAA.CAGc > 1:4473456/1‑36 (MQ=255)
ggAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGcc > 1:7854083/1‑36 (MQ=255)
ggAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGcc > 1:8090409/1‑36 (MQ=255)
aaaTGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGa < 1:6080189/36‑1 (MQ=255)
aTGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCAGATa > 1:2688592/1‑36 (MQ=255)
tGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAg > 1:5765483/1‑36 (MQ=255)
gCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAga > 1:5821500/1‑36 (MQ=255)
gCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAga > 1:6158384/1‑36 (MQ=255)
ccAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAgat > 1:1394130/1‑36 (MQ=255)
ccAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAgat > 1:8133516/1‑36 (MQ=255)
cAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAgatg > 1:3094827/1‑36 (MQ=255)
cAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAgatg > 1:477891/1‑36 (MQ=255)
aGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAgatga > 1:939369/1‑36 (MQ=255)
aaaaaaGTAAGTTGCTTAAAC.CAGCCGATAgatgat < 1:1327789/33‑1 (MQ=16)
aaaaGACAGTGGCTTAAAA.CAGCCGATAGATGATGc < 1:1350662/35‑1 (MQ=37)
aaaGTCAGTGTTTTAAAC.CAGCCGATAGATGATGCg < 1:6869764/36‑1 (MQ=19)
aaGTCTGTCGCTAAAAC.CAGCCGATAGATGATGCgg < 1:4471076/36‑1 (MQ=16)
aaGTAAGTGGTTTAAAA.CAGCCGATAGATGATGCgg < 1:1803936/36‑1 (MQ=25)
aaGACAGTGGTTTAAAC.CAGCCGATAGATGATGCgg < 1:2846322/36‑1 (MQ=19)
aGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGa > 1:8408416/1‑36 (MQ=255)
aGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGa > 1:1924869/1‑36 (MQ=255)
aGTAAGGGGTTTAAAA.CAGCCGATAGATGAAGCGGa < 1:7538888/36‑1 (MQ=12)
aaaGTGGATTTAAA.CAGCCGATAGATGATGCGGAAt < 1:8421005/34‑1 (MQ=38)
ggTGGCTAAAAC.CAGCCGATAGATGATGCGGAATgg < 1:1987312/35‑1 (MQ=25)
gTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGa > 1:1341691/1‑36 (MQ=255)
gTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGa > 1:7517280/1‑36 (MQ=255)
ggCTTTAAA.CAGCCGATAGATGATGCGGAATGGACt > 1:6412094/1‑36 (MQ=255)
ggCTTTAAA.CAGCCGATAGATGATGCGGAATGGACt > 1:2554675/1‑36 (MQ=255)
ttttAAACCAGCCGATAGATGATGCGGAATGGACTa < 1:6515169/35‑1 (MQ=37)
atttAAACCAGCCGATAGATGATGCGGAATGGACTa < 1:3747890/35‑1 (MQ=37)
tttAAACCAGCCGATAGATGATGCGGAATGGACTAt < 1:168952/36‑1 (MQ=37)
tttAAA.CAGCCGATAGATGATGCGGAATGGACTAtt > 1:2483539/1‑36 (MQ=255)
ttAGA.CACCCTATAGATGATGCTGAATGGACTATTa < 1:7313555/36‑1 (MQ=19)
ttAAA.CAGCCGATAGATGATGCGGAATGGACTATTa > 1:8293549/1‑36 (MQ=255)
ttAAA.CAGCCGATAGATGATGCGGAATGGACTATTa > 1:625141/1‑36 (MQ=255)
taaaa.CAGCCGATAGATGATGCGGAATGGACTATTa < 1:3097564/34‑1 (MQ=255)
tAAA.AAGCCGATAGATGATGCGGAATGGACTATTac > 1:7617853/1‑36 (MQ=255)
aaa.CAGCCGATAGATGATGCGGAATGGACTATTacc > 1:7647714/1‑36 (MQ=255)
a.CAGCCGGTAGATGATGCGGAATGGACTATTgccac < 1:446641/36‑1 (MQ=37)
|
TACACGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTATTACCAC > REL606/904141‑904211
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|