Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,476,233 | 0 | A→T | 7.7% | 0.6 ‑7.1 ‑0.0 | 67 | 347 | idnO | gluconate 5‑dehydrogenase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (6/0): ref base (16/44): total (23/44) | ||||||||||
Fisher's exact test strand distribution p-value = 8.21e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.53e-01 |
CCGCTTGCGATACCAGGAACACGGCGGTCTGGTTTACTGCGATCACATCATTCCACTCTTGTTCAGGGAAC > REL606/4476198‑4476268
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ccGCTTGCGATACCAGGAACACGGCGGTCTGGTTTa < 1:6174989/36‑1 (MQ=255)
cGCTTGCGATACCAGGAACACGGCGGTCTGGTTTAc < 1:4596123/36‑1 (MQ=255)
gCTTGCGATACCAGGAACACGGCGGTCTGGTTTACt > 1:5435042/1‑36 (MQ=255)
cTTGCGATACCAGGAACACGGCGGTCTGGTTTACTg < 1:3484378/36‑1 (MQ=255)
cTTGCGATACCAGGAACACGGCGGTCTGGTTTACTg < 1:7080035/36‑1 (MQ=255)
ttGCGATACCAGGAACACGGCGGTCTGGTTTACTGc < 1:2715740/36‑1 (MQ=255)
ttGCGATACCAGGAACACGGCGGTCTGGTTTACTGc < 1:1766959/36‑1 (MQ=255)
gtGCGATACCAGGAACACGGCGGTCTGGTTTACTGc < 1:3848713/35‑1 (MQ=255)
tGCGATACCAGGAACACGGCGGTCTGGTTTACTGCg < 1:1337075/36‑1 (MQ=255)
gCGATACCAGGAACACGGCGGTCTGGTTTACTGCGa < 1:5524820/36‑1 (MQ=255)
cGATACCAGGAACACGGCGGTCTGGTTTACTGCGAt < 1:2059501/36‑1 (MQ=255)
gATACCAGGAACACGGCGGTCTTGTTTGCTGCGATc > 1:995267/1‑36 (MQ=37)
aTACCAGGAACACGGCGGTCTGGTTTACTGCGATca < 1:4371408/36‑1 (MQ=255)
tACCAGGAACACGGCGGTCTGGTTTACTGCGATcac < 1:1216132/36‑1 (MQ=255)
aCCAGGAACACGGCGGTCTGGTTTACTGCGATtaca > 1:5642074/1‑36 (MQ=255)
aCCAGGAACACGGCGGTCTGGTTTACTGCGATcacc < 1:5050983/36‑2 (MQ=255)
aCCAGGAACACGGCGGTCTGGTTTACTGCGATcaca < 1:557261/36‑1 (MQ=255)
aCCAGGAACACGGCGGTCTGGGTTTCTTCGATcaca > 1:4860055/1‑36 (MQ=25)
ccAGGAACACGGCGGTCTGGTTTTCTGCGATcacac > 1:1962430/1‑35 (MQ=255)
ccAGGAACACGGCGGTCTGGTTTACTGCGATCAcat < 1:7635459/36‑1 (MQ=255)
ccAGGAACACGGCGGTCTGGTTTACTGCGATCAcat < 1:6146694/36‑1 (MQ=255)
ccAGGAACACGGCGGTCTGGTTTACTGCGATCAcat < 1:3748067/36‑1 (MQ=255)
cAGGAACACGGCGGTCTGGTTTTCTTCGATCCcatc > 1:4887561/1‑36 (MQ=25)
cAGGAACACGGCGGTCTGGTTTACTGCGATCAcatc < 1:5256539/36‑1 (MQ=255)
cAGGAACACGGCGGTCTGGTTTACTGCGATCAcatc < 1:989260/36‑1 (MQ=255)
cAGGAACACGGCGGTCTGGTTTACTGCGATCAcatc < 1:2174609/36‑1 (MQ=255)
aGGAACACGGCGGTCTGGTTTTTTGCGATCAcatca > 1:2948396/1‑36 (MQ=37)
aGGAACACGGCGGTCTGGTTTACTGCGATCAcatca < 1:5357906/36‑1 (MQ=255)
aGGAACACGGCGGTCTGGGTTTCTTTTATCAcctca > 1:4499729/1‑36 (MQ=12)
aGGAACACGGCGGGCTGGTTTACTGCGATTAcatca > 1:1521823/1‑36 (MQ=37)
ggAACACGGCGGTCTGGTTTACTGCGATCAcatcat < 1:7262903/36‑1 (MQ=255)
ggAACACGGCGGTCTGGTTTACTGCGATCAcatcat < 1:5559471/36‑1 (MQ=255)
gAACACGGCGGTCTGGTTTACTGCGATCACATCAtt < 1:1981341/36‑1 (MQ=255)
aaCACGGCGGTCTGGTTTACTGCGATCACATCATTc < 1:3363531/36‑1 (MQ=255)
aaCACGGCGGTCTGGTTTACTGCGATCACATCATTc < 1:3033919/36‑1 (MQ=255)
aaCACGGCGGTCCGGTGTATTGCGCTCATAGCATTc > 1:1518988/1‑36 (MQ=12)
acacGGCGGTCTGGTTTACTGCGATCACATCATTcc < 1:5337330/36‑1 (MQ=255)
cacGGCGGTCTGGTTTACTGCGATCACATCATTCCa < 1:5216043/36‑1 (MQ=255)
acGGCGGTCTGGTTTACTGCGATCACATCATTCCAc < 1:7268518/36‑1 (MQ=255)
cggcggTCTGGTTTACTGCGATCACATCATTCCAct < 1:1842368/36‑1 (MQ=255)
ggcggTCTGGTTTTCTGCGATCACATCATTTCActc > 1:4148231/1‑36 (MQ=37)
ggcggTCTGGTTTACTGCGATCACATCATTCCActc < 1:7657546/36‑1 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct < 1:7248561/36‑1 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct > 1:6327009/1‑36 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct > 1:5507597/1‑36 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct < 1:2541513/36‑1 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct < 1:304787/36‑1 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct < 1:4914653/36‑1 (MQ=255)
gcggTCTGGTTTACTGCGATCACATCATTCCActct < 1:3666200/36‑1 (MQ=255)
cggTCTGGTTTACTGCGATCACATCATTCCACTCtt > 1:6110251/1‑36 (MQ=255)
cggTCTGGTTTACTGCGATCACATCATTCCACTCtt < 1:1593157/36‑1 (MQ=255)
cggTCTGGTTTACTGCGATCACATCATTCCACTCtt < 1:7872659/36‑1 (MQ=255)
ggTCTTATTTACTTCGATCACATCATTCCACTCTTg < 1:4051116/36‑1 (MQ=25)
ggTCTGGTTTACTGCGATCACATCATTCCACTCTTg > 1:6245780/1‑36 (MQ=255)
ggTCTGGTTTACTGCGATCACATCATTCCACTCTTg > 1:3934801/1‑36 (MQ=255)
gTCTGGTTTACTGCGATCACATCATTCCACTCTTGt > 1:1544719/1‑36 (MQ=255)
tCTGGTTTACTGCGATCACATCATTCCACTCTTGtt < 1:886486/36‑1 (MQ=255)
cTGGTTTACTGCGATCACATCATTCCACTCTTGTTc < 1:237146/36‑1 (MQ=255)
cTGGTTTACTGCGATCACATCATTCCACTCTTGTTc > 1:3164888/1‑36 (MQ=255)
ggTTTACTGCGATCACATCATTCCACTCTTGTTCAg > 1:7425278/1‑36 (MQ=255)
gTTTACTGCGATCACATCATTCCACTCTTGTTCAgg > 1:1213892/1‑36 (MQ=255)
gTTTACTGCGATCACATCATTCCACTCTTGTTCAgg > 1:3437504/1‑36 (MQ=255)
gTTTACTGCGATCACATCATTCCACTCTTGTTCAgg < 1:2209368/36‑1 (MQ=255)
tttACTGCGATCACATCATTCCACTCTTGTTCAggg < 1:3456282/36‑1 (MQ=255)
tttACTGCGATCACATCATTCCACTCTTGTTCAggg > 1:3555848/1‑36 (MQ=255)
tttACTGCGATCACATCATTCCACTCTTGTTCAggg < 1:5220988/36‑1 (MQ=255)
ttACTGCGATCACATCATTCCACTCTTGTTCAGGGa > 1:7759352/1‑36 (MQ=255)
tACTGCGATCACATCATTCCACTCTTGTTCAGGGaa < 1:6772287/36‑1 (MQ=255)
aCTGCGATCACATCATTCCTCTCTTGTTCAGGGAAc < 1:1391124/36‑1 (MQ=255)
aCTGCGATCACATCATTCCACTCTTGTTCAGGGAAc > 1:3328620/1‑36 (MQ=255)
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CCGCTTGCGATACCAGGAACACGGCGGTCTGGTTTACTGCGATCACATCATTCCACTCTTGTTCAGGGAAC > REL606/4476198‑4476268
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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