Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 100% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)41 (1.000) 28/64 NT 100% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 0 (0.040)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =0 (0.000)55 (1.340) 33/64 NT 100% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 104 total aligned reads displayed.

CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACA  >  REL606/1821490‑1821559
                                   |                                  
tccatttcatcgtccaacaaaatgggtgcagtacat                                    <  1:3890898‑M1/1‑1 (MQ=255)
 ttCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATG                                   <  1:5342690‑M2/36‑1 (MQ=255)
 ttCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATG                                   >  1:3656581‑M2/1‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                   >  1:4309266‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                   >  1:3407446‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                   >  1:3144009‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                   >  1:1475053‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                   >  1:1124715‑M1/35‑36 (MQ=255)
  tcctccATGTTTGCTTTAAAGGTATTGGCTCCATGG                                  >  1:5418506‑M2/1‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaTgg                                  <  1:937589‑M1/3‑1 (MQ=255)
   ccgccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                 <  1:942629‑M2/36‑2 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                 >  1:1984244‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                 >  1:1957766‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                 <  1:569662‑M1/4‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                >  1:2046263‑M1/32‑36 (MQ=255)
    ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGtg                                >  1:4906228‑M2/1‑34 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                               <  1:4898083‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                               <  1:5511555‑M1/6‑1 (MQ=255)
     tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                               <  1:1160114‑M2/36‑4 (MQ=255)
     tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                               <  1:2859617‑M2/36‑4 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaTGGTCGc                              <  1:3830261‑M1/7‑1 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaTGGTCGcc                             >  1:4340277‑M1/29‑36 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                             >  1:5644853‑M2/1‑31 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                            <  1:3432307‑M1/9‑1 (MQ=255)
         tGTTTGCTTTAAAGGTATTGGCTCCATGGtgtactg                           <  1:306759‑M2/36‑8 (MQ=255)
          cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                          <  1:4746049‑M1/11‑1 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATTGtgtactgac                         <  1:3763532‑M2/36‑10 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                         <  1:4495235‑M2/36‑10 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                         <  1:1554556‑M1/12‑1 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                         <  1:2824893‑M1/12‑1 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                         <  1:5926677‑M1/12‑1 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                         <  1:5322695‑M1/12‑1 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                         <  1:3233891‑M1/12‑1 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                        >  1:4824470‑M2/1‑26 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                        <  1:825250‑M2/36‑11 (MQ=255)
            tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                        >  1:2458162‑M1/24‑36 (MQ=255)
            tccaacaaaatgggtgcagtacaTGGTCGACagaaa                        <  1:1483315‑M1/13‑1 (MQ=255)
             tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                       >  1:5744827‑M2/1‑25 (MQ=255)
             tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                       >  1:1207454‑M2/1‑25 (MQ=255)
             ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                       >  1:1299822‑M1/23‑36 (MQ=255)
              gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                      <  1:855712‑M2/36‑13 (MQ=255)
              gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                      >  1:1455654‑M2/1‑24 (MQ=255)
              gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                      >  1:662170‑M2/1‑24 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                      <  1:1973363‑M1/15‑1 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                      <  1:824119‑M1/15‑1 (MQ=255)
              caacaaaatgggtgcagtacaTGGTAGCCagaaaga                      <  1:4975862‑M1/15‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                     <  1:2581843‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                     <  1:5333950‑M1/16‑1 (MQ=255)
                tttAAAGGTATTGGCTCCATGGtgtactgaccccaa                    <  1:813051‑M2/36‑15 (MQ=255)
                tttAAAGGTATTGGCTCCATGGtgtactgaccccaa                    >  1:5524429‑M2/1‑22 (MQ=255)
                acaaaatgggtgccgtacaTGGTCGCCAgaaagaaa                    <  1:4717525‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                    <  1:1219955‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                    <  1:1736325‑M1/17‑1 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                   >  1:1779516‑M1/19‑36 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                   <  1:2812768‑M1/18‑1 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                  <  1:403225‑M2/36‑17 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                  >  1:3329205‑M2/1‑20 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                  <  1:3203603‑M2/36‑17 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                 <  1:1702492‑M1/20‑1 (MQ=255)
                   aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                 <  1:3116255‑M2/36‑18 (MQ=255)
                    aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                <  1:2818787‑M1/21‑1 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt               <  1:3684199‑M1/22‑1 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt               <  1:2448874‑M1/22‑1 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc             >  1:4995754‑M1/13‑36 (MQ=255)
                        tATTGGCTCCATGGtgtacttaccccaaaaagttgg            <  1:4552603‑M2/36‑23 (MQ=255)
                        tATTGGCTCCATGGtgtactgaccccaaaaagttgg            <  1:5888107‑M2/36‑23 (MQ=255)
                        tATTGGCTCCATGGtgtactgaccccaaaaagttgg            <  1:4370302‑M2/36‑23 (MQ=255)
                        ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa            <  1:403302‑M1/25‑1 (MQ=255)
                        ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa            <  1:4586627‑M1/25‑1 (MQ=255)
                        ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa            <  1:1264974‑M1/25‑1 (MQ=255)
                         gtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAt           <  1:3864065‑M1/26‑1 (MQ=255)
                          ttGGCTCCATGGtgtactgaccccaaaaagttggac          <  1:5928682‑M2/36‑25 (MQ=255)
                          tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt          >  1:1893187‑M1/10‑36 (MQ=255)
                           tGGCTCCATGGtgtactgaccccaaaaagttggaca         >  1:1332250‑M2/1‑11 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCGCCATTa         <  1:1695707‑M1/28‑1 (MQ=255)
                            cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa        >  1:4309354‑M1/8‑36 (MQ=255)
                            cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa        >  1:1834347‑M1/8‑36 (MQ=255)
                            cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa        >  1:3253547‑M1/8‑36 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt       <  1:968183‑M2/36‑28 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt       >  1:4599144‑M2/1‑9 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt       <  1:3980702‑M2/36‑28 (MQ=255)
                             agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg       <  1:4931497‑M1/30‑1 (MQ=255)
                              gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg      <  1:1325722‑M1/31‑1 (MQ=255)
                              cTCCATGGtgtactgaccccaaaaagttggacagtt      <  1:3146714‑M2/36‑29 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc     <  1:4860952‑M1/32‑1 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc     >  1:4808562‑M1/5‑36 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc     >  1:4097900‑M1/5‑36 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc     >  1:719027‑M1/5‑36 (MQ=255)
                               tCCATGGtgtactgaccccaaaaagttggacagtta     <  1:310714‑M2/36‑30 (MQ=255)
                               tCCATGGtgtactgaccccaaaaagttggacagtta     >  1:5073458‑M2/1‑7 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa   <  1:1599675‑M2/36‑32 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa   >  1:3574340‑M2/1‑5 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa   <  1:3908495‑M2/36‑32 (MQ=255)
                                 cATGGggtactgaccccaaaaagttggacagttaaa   <  1:5251465‑M2/36‑32 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac  >  1:660915‑M2/1‑4 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac  >  1:5480529‑M2/1‑4 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac  <  1:5345524‑M2/36‑33 (MQ=255)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca  <  1:12209‑M1/35‑1 (MQ=255)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca  <  1:25451‑M1/35‑1 (MQ=255)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca  <  1:192310‑M1/35‑1 (MQ=255)
                                   |                                  
CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACA  >  REL606/1821490‑1821559

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG