Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,972 | IS150 (–) +3 bp | 86.1% | intergenic (‑14/‑514) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16972 = | 5 (0.110) | 28 (0.610) | 20/52 | NT | 84.9% | intergenic (‑14/‑516) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16974 | 5 (0.090) | 34 (0.640) | 25/60 | NT | 87.2% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
ACGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACC.................................. < REL606/17015‑16972
...................................CTATCAACCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < REL606/2775877‑2775844
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT < 1:6641158/36‑1 (MQ=255)
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT < 1:5017033/36‑1 (MQ=255)
AGAGAAAAGCCCCGAGTGATATTTTACTATCAACCT < 1:4237617/36‑1 (MQ=255)
GAGAAAAGCCCCGAGTGATATTTTACTATCAACCTG < 1:4451953/36‑1 (MQ=255)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT > 1:926362/1‑36 (MQ=255)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT > 1:6126712/1‑36 (MQ=255)
AGAAAAGCCCCGAGTGATATTTTACTATCAACCTGT > 1:2354210/1‑36 (MQ=255)
GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA < 1:3844061/36‑1 (MQ=255)
GAAAAGCCCCGAGTGATATTTTACTATCAACCTGTA > 1:7588337/1‑36 (MQ=255)
AAAGCCCCGAGTGATATTTTACTATCAACCTGTACT > 1:8154607/1‑36 (MQ=255)
AGCCCCGAGTGATATTTTACTATCAACCTGTACTGC < 1:8098224/36‑1 (MQ=255)
GCCCCGAGTGATATTTTACTATCAACCTGTACTGCA < 1:3136500/36‑1 (MQ=255)
GCCCCGAGTGATATTTTACTATCAACCTGTACTGCA > 1:6331631/1‑36 (MQ=255)
CCCCGAGTGATATTTTACTATCAACCTGTACTGCAC < 1:856367/36‑1 (MQ=255)
CCCCGAGTGATATTTTACTATCAACCTGTACTCCAC > 1:5486160/1‑36 (MQ=255)
CCCGAGTGATATTTTACTATCAACCTGTACTGCACC > 1:889170/1‑36 (MQ=255)
CCCGAGTGATATTTTACTATCAACCTGTACTGCACC > 1:6790997/1‑36 (MQ=255)
CCGAGTGATATTTTACTATCAACCTGTACTGCACCC < 1:5034331/36‑1 (MQ=255)
CGAGTGATATTTTACTATCAACCTGTACTGCACCCA < 1:7209542/36‑1 (MQ=255)
GAGTGATATTTTACTATCAACCTGTACTGCACCCAT > 1:1508927/1‑36 (MQ=255)
GATATTTTACTATCAACCTGTACTGCACCCATTTTG < 1:3522247/36‑1 (MQ=255)
GATATTTTACTATCAACCTGTACTGCACCCATTTTG < 1:2489396/36‑1 (MQ=255)
GATATTTTACTATCAACCTGTACTGCACACATTTTG > 1:1189810/1‑36 (MQ=255)
GATATTTTACTATCAAACTGTACTGCACCCATTTTG > 1:180869/1‑36 (MQ=255)
ATATTTTACTATCAACCTGTACTGCACCCATTTTGT < 1:1928510/36‑1 (MQ=255)
TATTTTACTATCAACCTGTACTGCACCCATTTTGTT > 1:1801789/1‑36 (MQ=255)
TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC < 1:1341657/36‑1 (MQ=255)
TTACTATCAACCTGTACTGCACCCATTTTGTTGGAC < 1:3561155/36‑1 (MQ=255)
ACGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACC.................................. < REL606/17015‑16972
...................................CTATCAACCTGTACTGCACCCATTTTGTTGGACGATGAAATGG < REL606/2775877‑2775844
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 24 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
|