Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | 22.4% | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 15386 = | NA (NA) | 6 (0.110) | 6/64 | NT | 17.6% | noncoding (1/1343 nt) | IS186 | repeat region |
? | REL606 | = 4524527 | 28 (0.490) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
* | ? | REL606 | = 16728 | NA (NA) | 9 (0.170) | 8/64 | NT | 27.3% | noncoding (1343/1343 nt) | IS186 | repeat region |
? | REL606 | 4524522 = | 24 (0.420) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) |
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG................................... < REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC < REL606/4524527‑4524493
GTAATACCACAACCCTTAAGTTAGCGCTTATGGGTT < 1:6830039/36‑1 (MQ=255)
AATACCACAACCCTTAAGTTAGCGCTTATGGGTTGC < 1:1569491/36‑1 (MQ=255)
CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT < 1:696160/36‑1 (MQ=1)
AAGTGAGCGCTTATGGGTTGCGGCCCCGGTTGCAAA < 1:2686897/36‑1 (MQ=0)
GTTAGCGCTTATGGGTTGGGGCCCCGGTTGCAAAAT < 1:144910/36‑1 (MQ=0)
TTAGCGCTTATGGGTTGCGGCGCCGGTTGCAAAATA > 1:4254583/1‑36 (MQ=0)
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG................................... < REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC < REL606/4524527‑4524493
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|