Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 100% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.000)30 (0.900) 22/52 NT 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)23 (0.600) 20/60 NT 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................  >  REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774435‑2774468
                                                                        
     CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT                                 <  1:3878335/36‑1 (MQ=32)
          TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA                            >  1:4892034/1‑36 (MQ=38)
            TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC                          >  1:3769548/1‑36 (MQ=38)
              TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC                        >  1:3826141/1‑36 (MQ=38)
                catCATATAGGGGGCCTCGGGTTGTACTGACCCCAA                      <  1:987645/33‑1 (MQ=255)
                CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAA                      <  1:707666/36‑1 (MQ=40)
                 AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA                     >  1:4167776/1‑36 (MQ=255)
                 AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA                     <  1:3137023/36‑1 (MQ=255)
                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                    <  1:817432/36‑1 (MQ=255)
                    ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG                  >  1:2371042/1‑36 (MQ=255)
                    ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG                  >  1:685946/1‑36 (MQ=255)
                     TATAGGGGGCCTCGGGTTGTACTGACCCAAAAAAGT                 >  1:3319914/1‑36 (MQ=255)
                        AGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGG              >  1:2514643/1‑36 (MQ=255)
                         GGGGGCCTCGGGTTGTACTGGCCCCAAAAAGTTGGA             <  1:3406796/36‑1 (MQ=255)
                         GGGGGCCTCGGGTTGTACTGACCCCAAACAGTTGGA             >  1:5848045/1‑36 (MQ=255)
                         GGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGA             >  1:4524928/1‑36 (MQ=255)
                           GGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA           <  1:3463919/36‑1 (MQ=255)
                            GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG          >  1:2962408/1‑36 (MQ=255)
                               CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA       >  1:3205064/1‑36 (MQ=255)
                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA      <  1:2347529/36‑1 (MQ=255)
                                 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA     >  1:5880490/1‑36 (MQ=40)
                                  GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    >  1:4102121/1‑36 (MQ=38)
                                  GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    <  1:16812/36‑1 (MQ=38)
                                                                        
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................  >  REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774435‑2774468

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG