Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,764,698 | IS1 (–) +9 bp | 52.5% | intergenic (‑318/‑7) | ppsA ← / → ydiA | phosphoenolpyruvate synthase/hypothetical protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 241257 = | NA (NA) | 18 (0.310) | 18/66 | NT | 48.6% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 1764698 = | 19 (0.440) | intergenic (‑318/‑15) | ppsA/ydiA | phosphoenolpyruvate synthase/hypothetical protein | |||||
* | ? | REL606 | = 1764706 | 19 (0.470) | 24 (0.420) | 22/66 | NT | 55.8% | intergenic (‑326/‑7) | ppsA/ydiA | phosphoenolpyruvate synthase/hypothetical protein |
? | REL606 | = 1974039 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region |
CACTAAATCAGTAAGTTGGCAGCATCACCCA................................... < REL606/241285‑241257
.............................CACGGGAAGAACAAAATGGATAATGCTGTTGATCGCC > REL606/1764698‑1764734
CACTAAATCAGTAAGTTGGCAGCATCACCCACGGGA > 1:6112959/1‑36 (MQ=35)
ACTAAATCAGTAAGTTGGCAGCATCACCCACGGGAA < 1:4784487/36‑1 (MQ=38)
CTAAATCAGTAAGTTGGCAGCATCACCCACGGGAAG < 1:790364/36‑1 (MQ=38)
CTAAATCAGTAAGTTGGCAGCATCACCCACGGGAAG > 1:640076/1‑36 (MQ=38)
TAAATCAGTAAGTTGGCAGCATCACCCACGGGAAGA < 1:4218586/36‑1 (MQ=38)
TCAGTAAGTTGGCAGCATCACCCACGGGAAGAACAA < 1:2978246/36‑1 (MQ=38)
CAGTAAGTTGGCAGCATCACCCACGGGAAGAACAAA < 1:7909033/36‑1 (MQ=38)
AAGTTGGCAGCATCACCCACGGGAAGAACAAAATGG < 1:3474185/36‑1 (MQ=38)
GTTGGCAGCATCACCCACGGGAAGAACAAAATGGAT > 1:4523025/1‑36 (MQ=35)
GGCAGCATCACCCACGTGAAGAACAAAATGGATAAT < 1:1920264/36‑1 (MQ=0)
GCAGCATCACCCACGGGAAGAACAAAATGGATAATG > 1:6900385/1‑36 (MQ=1)
AGCATCACCCACGGGAAGAACAAAATGGATAATGCT > 1:7169104/1‑36 (MQ=1)
GCATCACCCACGGGAAGAACAAAATGGATAATGCTG < 1:949364/36‑1 (MQ=1)
GCATCACCCACGGGAAGAACAAAATGGATAATGCTG > 1:6176105/1‑36 (MQ=1)
CATCACCCACGGGAAGAACAAAATGGATGATGCTGT < 1:7012737/36‑1 (MQ=0)
ATCACCCACGGGAAGAACAAAATGGATAATGCTGTT < 1:2073157/36‑1 (MQ=1)
ACCCACGGGAAGAACAAAATGGATAATGCTGTTGAT < 1:7325812/36‑1 (MQ=1)
CCACGGGAAGAACAAAATGGATAATGCTGTTGATCG < 1:5046047/36‑1 (MQ=1)
CACTAAATCAGTAAGTTGGCAGCATCACCCA................................... < REL606/241285‑241257
.............................CACGGGAAGAACAAAATGGATAATGCTGTTGATCGCC > REL606/1764698‑1764734
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|