Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,871,909 | G→T | 35.3% | intergenic (‑96/‑36) | yoaA ← / → yoaB | conserved protein with nucleoside triphosphate hydrolase domain/hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,871,909 | 0 | G→T | 35.3% | 6.6 ‑4.4 0.0 | 33 | intergenic (‑96/‑36) | yoaA/yoaB | conserved protein with nucleoside triphosphate hydrolase domain/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (12/0): ref base (11/9): total (24/9) | ||||||||||
Fisher's exact test strand distribution p-value = 1.17e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGACAAAATG > REL606/1871874‑1871944
|
aGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTg < 1:3460803/36‑1 (MQ=255)
aGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTg < 1:2747688/36‑1 (MQ=255)
gtggtgACGGCGCCCTCACATTGTGGCAGTCTTTgc < 1:5219570/36‑1 (MQ=255)
gtggtgACGGCGACCTCACATTGTGGCAGTCTTTgc < 1:4701228/36‑1 (MQ=255)
gtggtgACGGCGACCTCACATTGTGGCAGTCTTTgc < 1:1817059/36‑1 (MQ=255)
gtgACGGCGACCTCACATTGTGGCAGTCTTTgcagc < 1:2123327/36‑1 (MQ=255)
tgACGGCGACCTCACATTGTGGCAGTCTTTgcagca < 1:3906393/36‑1 (MQ=255)
gACGGCGAACTCACATTGTGGCAGTCTTTTCAGCAc > 1:657202/1‑36 (MQ=38)
cGGCGACCTCACATTGTGGCAGTTTTTTTAGCTCGa > 1:3209786/1‑36 (MQ=19)
cGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGa > 1:5891727/1‑36 (MQ=255)
gCGACCTCACATTGTGGCAGTCTTTGCAGCACGaaa < 1:4016076/36‑1 (MQ=255)
gCGACCTCACATTGTGGCAGTCTTTGCAGCACGaaa < 1:4908332/36‑1 (MQ=255)
cGACCTCACATTGTGGCAGTCCTTGCAGAACGaaaa > 1:3009301/1‑36 (MQ=38)
cGACCTCACATTGTGGCAGCATTTGCAGCACGaaaa > 1:265234/1‑36 (MQ=37)
gACCTCACATTGTGGCAGTCTTTTCAGTACGAAAAt > 1:5157786/1‑36 (MQ=37)
gACCTCACATTGTGGCAGTCTTTTCAGCACGAAAAt > 1:114055/1‑36 (MQ=255)
gACCTCACATTGGGGAAGTCTGTGCTGCTCGAAAAt > 1:1617956/1‑36 (MQ=16)
aCCTCACATTGTGGCAGTCTGTCCAGCACGAAAATg > 1:282535/1‑36 (MQ=37)
ccTCACATTGTGGCAGTCTTTTTAGCACGAAAATgg > 1:5360379/1‑36 (MQ=37)
ccTCACATTGTGGCAGTCTTTTCCGCACGCAAAttg > 1:4267300/1‑34 (MQ=21)
cTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGa < 1:2672343/36‑1 (MQ=255)
cTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGa < 1:2357692/36‑1 (MQ=255)
cTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGa < 1:177182/36‑1 (MQ=255)
cTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGa > 1:4194743/1‑36 (MQ=255)
tCACATTGTGGCAGTCTTTTCAGCACGAAAATGGaa > 1:5633970/1‑36 (MQ=255)
tCACATTGTGGCAGTCTTTGCAGCACGAAAATGGaa < 1:5611141/36‑1 (MQ=255)
cacaTTGTGGCAGTCTTTTTAGCACGAAAATGGAAg > 1:4066889/1‑36 (MQ=37)
acaTTGTGGCAGTCTTTTCAGCACGAAAATGGAAgg > 1:3312426/1‑36 (MQ=255)
acaTTGTGGCAGCNNTTTCAGAACGAAAATCGAAgg > 1:563740/1‑36 (MQ=16)
aTTGTGGCAGTCTTTTCAGCACGAAAATGGAAGGAt > 1:1630774/1‑36 (MQ=255)
aTTGTGGCAGGCTTTTACGCGCGAAAATTGAAgggt > 1:1393255/1‑34 (MQ=2)
gtgGCAGTCTTTGCAGCACGAAAATGGAAGGATAAt < 1:3367975/36‑1 (MQ=255)
ggCAGTCTTTGCAGCACGAAAATGGAAGGATAATGa < 1:2409059/36‑1 (MQ=255)
ggCAGTCTTTGCAGCACGAAAATGGAAGGATAATGa > 1:1378902/1‑36 (MQ=255)
aGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGa > 1:844281/1‑36 (MQ=255)
gTCTTTGCAGCACGAAAATGGAAGGATAATGAGGAc > 1:5587918/1‑36 (MQ=255)
tCTTTGCAGCACGAAAATGTAAGGATAATGAGGACa < 1:4570046/36‑1 (MQ=255)
tCTTTGCAGCACGAAAATGGAAGGATAATGAGGACa > 1:2412709/1‑36 (MQ=255)
ctgtGCAGCACGACCATGGAAGGGCAATGAGGACaa > 1:155665/4‑36 (MQ=16)
cTTTGCAGCACGAAAATGGAAGGATAATGAGGACaa > 1:2214504/1‑36 (MQ=255)
gcagcaCGAAAATGGAAGGATAATGAGGACAAAatg > 1:126929/1‑36 (MQ=255)
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AGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGACAAAATG > REL606/1871874‑1871944
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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