Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 146,093 | Δ1 bp | 4.8% | coding (512/927 nt) | yadG → | predicted transporter subunit: ATP‑binding component of ABC superfamily |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 146,093 | 0 | T→. | 4.8% | 5.1 ‑1.4 ‑0.4 | 63 | coding (512/927 nt) | yadG | predicted transporter subunit: ATP‑binding component of ABC superfamily |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (30/30): total (33/30) | ||||||||||
Fisher's exact test strand distribution p-value = 2.40e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.01e-01 |
TCTCGACGAACCGACCGCAGGCGTGGATATTGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTAA > REL606/146058‑146128
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tctcGACGAACCGACCGCAGGCGTGGATATTGAACt < 1:8423234/36‑1 (MQ=255)
ctcGACGAACCGACCGCAGGCGTGGATATTGAACtt > 1:3531297/1‑36 (MQ=255)
tcGACGAACCGACCGCAGGCGTGGATATTGAACTTc < 1:5880427/36‑1 (MQ=255)
tcGACGAACCGACCGCAGGCGTGGATATTGAACTTc < 1:5900309/36‑1 (MQ=255)
tcGACGAACCGACCGCAGGCGTGGATATTGAACTTc > 1:3393771/1‑36 (MQ=255)
tcGACGAACCGACCGCAGGCGTGGATATTGAACTTc < 1:2887609/36‑1 (MQ=255)
cgacgaACCGACCGCAGGCGTGGATATTGAACTTcg > 1:486334/1‑36 (MQ=255)
gacgaACCGACCGCAGGCGTGGATATTGAACTTcgc < 1:4956126/36‑1 (MQ=255)
gacgaACCGACCGCAGGCGTGGATATTGAACTTcgc > 1:4742182/1‑36 (MQ=255)
gacgaACCGACCGCAGGCGTGGATATTGAACTTcgc < 1:8349051/36‑1 (MQ=255)
cgaACCGACCGCAGGCGTGGATATTGAACTTcgccg < 1:7221453/36‑1 (MQ=255)
cgaACCGACCGCAGGCGTGGATATTGAACTTcgccg < 1:141562/36‑1 (MQ=255)
gaACCGACCGCAGGCGTGGATATTGAACTTcgccgc > 1:528949/1‑36 (MQ=255)
gaACCGACCGCAGGCGTGGATATTGAACTTcgccgc > 1:2469460/1‑36 (MQ=255)
gaACCGACCGCAGGCGTGGATATTGAACTTcgccgc > 1:7599280/1‑36 (MQ=255)
aaCCGACCGCAGGCGTGGATATTGAACTTCGCCGCt < 1:5017173/36‑1 (MQ=255)
aaCCGACCGCAGGCGTGGATATTGAACTTCGCCGCt < 1:8409430/36‑1 (MQ=255)
accgaccgCAGGCGTGGATATTGAACTTCGCCGCTc < 1:7191828/36‑1 (MQ=255)
accgaccgCAGGCGTGGATATTGAACTTCGCCGCTc > 1:3376391/1‑36 (MQ=255)
accgaccgCAGGCGTGGATATTGAACTTCGCCGCTc < 1:1705230/36‑1 (MQ=255)
ccgaccgCAGGCGTGGATATTGAACTTCGCCGCTCa < 1:2388729/36‑1 (MQ=255)
gaccgCAGGCGTGGATATTGAACTTCGCCGCTCAAt < 1:3983154/36‑1 (MQ=255)
gaccgCAGGCGTGGATATTGAACTTCGCCGCTCAAt > 1:5021688/1‑36 (MQ=255)
accgCAGGCGTGGATATTGAACTTCGCCGCTCAAtg > 1:6207745/1‑36 (MQ=255)
accgCAGGCGTGGATATTGAACTTCGCCGCTCAAtg < 1:7719809/36‑1 (MQ=255)
accgCAGGCGTGGATATTGAACTTCGCCGCGCAAtg > 1:7743296/1‑36 (MQ=255)
ccgCAGGCGTGGATATTGAACTTCGCCGCTCAAtgt < 1:7987372/36‑1 (MQ=255)
ccgCAGGCGTGGATATTGAACTTCGCCGCTCAAtgg > 1:1906822/1‑35 (MQ=255)
cgCAGGCGTGGATATTGAACTTCGCCGCTCAAtgtg < 1:5082452/36‑1 (MQ=255)
gCAGGCGTGGATCTTGAACTTCGCTGCTCAATGTgg > 1:7764408/1‑36 (MQ=38)
gCAGGCGTGGATATTGAACTTCGCCGCTCCATGTgg > 1:4827822/1‑36 (MQ=255)
gCAGGCGTGGATATTGAACTTCGCCGCTCAATGTgg > 1:4483034/1‑36 (MQ=255)
gCAGGCGTGGATATTGAACTTCGCCGCTCAATGTgg < 1:5418932/36‑1 (MQ=255)
gCAGGCGTGGATATTGAACTTCGCCGCTCAATGCgg > 1:6926809/1‑36 (MQ=255)
cAGGCGTGGATATTGACCTTCGCCGCTCAATGTggg < 1:1056386/36‑1 (MQ=255)
aGGCGTGGATATTGAACTTCGCCGCTCAATGTgggg > 1:7744031/1‑36 (MQ=255)
cGTGGATATTGAACTTCGCCGCTCAATGTGGGGCtt > 1:4129274/1‑36 (MQ=255)
gTGGATATTGAACTTCGCCGCTCAATGTGGGGCttt > 1:7842594/1‑36 (MQ=255)
tGGATATTGAACTTCGCCGCTCCATGTGGGGCtttt > 1:8201538/1‑36 (MQ=255)
tGGATATTGAACTTCGCCGCTCAATGTGGGGCtttt < 1:8406934/36‑1 (MQ=255)
tGGATATTGAACTTCGCCGCTCAATGTGGGGCtttt < 1:2860202/36‑1 (MQ=255)
tGGATATTGAACTTCGCCGCTCAATGTGGGGCtttt > 1:6516722/1‑36 (MQ=255)
ggATATTGAACTTCGCCGCTCAATGTGGGGCttttt < 1:7729688/36‑1 (MQ=255)
ggATATTGAACTTCGCCGCTCAATGTGGGGCttttt < 1:3544713/36‑1 (MQ=255)
gATATTGAACTTCGCCGCTCAATGTGGGGCTTTTTg > 1:598257/1‑36 (MQ=255)
atatTGAACTTCGCCGCTCAATGTGGGGCTTTTTGa > 1:1160025/1‑36 (MQ=255)
tatTGAACTTCGCCGCTCAATGTGGGGCTTTTTGaa > 1:7786064/1‑36 (MQ=255)
tatTGAACTTCGCCGCTCAATGTGGGGCTTTTTGaa < 1:3256931/36‑1 (MQ=255)
tatTGAACTTCGCCGATCAATGTGGGGCTTTTTGaa > 1:2412878/1‑36 (MQ=255)
cttGAAC.TCGCCGCTCAATGTGGGGCTTTTTGAAgg > 1:6704612/2‑36 (MQ=38)
cttGAAC.TCGCCGCTCAATGTGGGGCTTTTTGAAgg > 1:5167537/2‑36 (MQ=38)
cttGAAC.TCGCCGCTCAATGTGGGGCTTTTTGAAgg > 1:5249888/2‑36 (MQ=38)
atTGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAg > 1:3203856/1‑36 (MQ=255)
atTGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAg < 1:572567/36‑1 (MQ=255)
ttGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAgg > 1:7869928/1‑36 (MQ=255)
tGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGa > 1:7883569/1‑36 (MQ=255)
tGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGa > 1:2882305/1‑36 (MQ=255)
tGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGa < 1:373484/36‑1 (MQ=255)
tGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGa > 1:5664748/1‑36 (MQ=255)
aaCTTCGCCGCTCAATGTGGGGCTTTTTGAAGGAtt < 1:4586351/36‑1 (MQ=255)
aCTTCGCCGCTCAATGTGGGGCTTTTTGAAGGAttt < 1:8065228/36‑1 (MQ=255)
aCTTCGCCGCTCAATGTGGGGCTTTTTGAAGGAttt < 1:5176297/36‑1 (MQ=255)
cTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTa < 1:2666190/36‑1 (MQ=255)
cTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTa > 1:3181659/1‑36 (MQ=255)
cTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTa < 1:140739/36‑1 (MQ=255)
ttCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTaa > 1:4548700/1‑36 (MQ=255)
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TCTCGACGAACCGACCGCAGGCGTGGATATTGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTAA > REL606/146058‑146128
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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