Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,620,003 | C→G | 17.5% | A353G (GCG→GGG) | slt → | lytic murein transglycosylase, soluble |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,620,003 | 0 | C→G | 17.5% | 3.7 ‑4.3 ‑0.0 | 28 | 1058 | slt | lytic murein transglycosylase, soluble |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (8/15): total (13/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.31e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.40e-01 |
GGCGAAAGAGAAAGATGAATGGCGTTACTGGCAGGCGGATTTACTGCTGGAACGCGGACGTGAAGCTGAA > REL606/4619968‑4620037
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ggCGAAAGAGAAAGATGAATGGCGTTACTGGCAGGc < 1:889621/36‑1 (MQ=255)
gaaagagaaagaTGAATGGCGTTACTGGCAGGGggg > 1:5642007/1‑35 (MQ=255)
gaaagagaaagaTGAATGGCGTTACTGGCAGGGggg > 1:3047800/1‑35 (MQ=255)
aaagagaaagaTGAATGGCGTTACTGGCAGGGgggg > 1:1391529/1‑34 (MQ=37)
aagagaaagaTGAATGGCGTTACTGGTAGGCGGAtt < 1:4434923/36‑1 (MQ=255)
aagagaaagaTGAATGGCGTTACTGGCAGGGggggt > 1:4232906/1‑33 (MQ=37)
tagaaataTGAATGGCGTTACTGGCAGGCGGATTTa < 1:4081602/35‑1 (MQ=255)
agaaagaTGAATGGCGTTACTGGCAGGCGGATTTAc < 1:1895144/36‑1 (MQ=255)
agaaagaTGAATGGCGTTACTGGCAGGCGGATTTAc < 1:4158163/36‑1 (MQ=255)
gaaagaTGAATGGCGTTACTGGCAGGCGGATTTAct < 1:622074/36‑1 (MQ=255)
gaaagaTGAATGGCGTTACTGGCAGGCGGATTTAct < 1:1159693/36‑1 (MQ=255)
agaTGAATGGCGTTACTGGCAGGCGGATTTActgct < 1:3691193/36‑1 (MQ=255)
tGAATGGCGTTACTGGCAGGCGGATTTACTGCTGGa < 1:3954523/36‑1 (MQ=255)
tGAATGGCGTTACTGGCAGGCGGATTTACTGCTGGa < 1:4560970/36‑1 (MQ=255)
tGGCGTTACTGGCAGGCGGATTTACTGCTGGAAcgc < 1:4637804/36‑1 (MQ=255)
gCGTTACTGGCAGGGGGGGTTATTGGTGGGAAGCgg > 1:3432925/1‑36 (MQ=0)
gCGTTACTGGCAGGCGGGTTTTTTGCTTGGAAGCgg > 1:637551/1‑36 (MQ=9)
gTTACTGGCAGGCGGGTTTTTTGCTTGGACGCgggc > 1:1197602/1‑34 (MQ=12)
tGGCAGGCGGATTTACTGCTGGAACGCGGACGtgaa < 1:4614899/36‑1 (MQ=255)
ggCAGGCGGATTTACTGCTGGAACGCGGACGtgaag > 1:1702836/1‑36 (MQ=255)
gCAGGCGGATTTACTGCTGGAACGCGGACGtgaagc < 1:5454994/36‑1 (MQ=255)
gCAGGCGGATTTACTGCTGGAAAGCGGACGtgaagc > 1:5706767/1‑36 (MQ=255)
cAGGCGGATTTACTGCTGGAACGCGGACGtgaagct < 1:983523/36‑1 (MQ=255)
cAGGCGGATTTACTGCTGGAACGCGGACGtgaagct > 1:540083/1‑36 (MQ=255)
cAGGCGGATTTACTGCTGGAACGCGGACGtgaagct > 1:3150462/1‑36 (MQ=255)
aGGCGGATTTACTGCTGGAACGCGGACGtgaagctg > 1:5458380/1‑36 (MQ=255)
ggCGGATTTCCTGCTGGAACGCGGACGtgaagctga < 1:1836790/36‑1 (MQ=255)
gCGGATTTACTTCGGGAACGCGGACGtgaagctgaa < 1:5083883/36‑1 (MQ=38)
gCGGATTTACTGCTGGAACGCGGACGtgaagctgaa > 1:728387/1‑36 (MQ=255)
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GGCGAAAGAGAAAGATGAATGGCGTTACTGGCAGGCGGATTTACTGCTGGAACGCGGACGTGAAGCTGAA > REL606/4619968‑4620037
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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