New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)33 (0.550) 28/70 NT 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCT...................................  <  REL606/35‑1
...................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  <  REL606/4629812‑4629778
                                                                      
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                    >  1:6378490/1‑36 (MQ=255)
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                    <  1:4677891/36‑1 (MQ=255)
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                    <  1:410470/36‑1 (MQ=255)
  ACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAA                                  <  1:1480544/36‑1 (MQ=255)
   CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                 >  1:5607014/1‑36 (MQ=255)
    ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAA                                <  1:4992471/36‑1 (MQ=255)
     TATTGCCCGTTGCAGTCAGAATGAAAAGATGAAAAA                               >  1:7140470/1‑36 (MQ=255)
        TGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                            >  1:643598/1‑36 (MQ=255)
         GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                           >  1:7046600/1‑36 (MQ=255)
           CCGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                         <  1:2416287/36‑1 (MQ=255)
               TGCAGTTAGAATGAAAAGCTGAAAAATACTTACTAA                     >  1:2338375/1‑36 (MQ=255)
               TGCAGTCAGAATGAAAAGCTGAAAAATACTTACTAA                     <  1:2411439/36‑1 (MQ=255)
                GCAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                    >  1:98152/1‑36 (MQ=255)
                 CAGTCAGAATGAAAAGCTGAAAAATACTTACTAAGG                   >  1:2898450/1‑36 (MQ=255)
                  AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                  >  1:1681221/1‑36 (MQ=255)
                   GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                 >  1:596652/1‑36 (MQ=255)
                   GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                 >  1:6467157/1‑36 (MQ=255)
                    TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT                >  1:7301739/1‑36 (MQ=255)
                     CAGAATGAAAAGCTGAAAAATAATTACTAAGGCGTT               >  1:7142546/1‑36 (MQ=255)
                      AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT              <  1:1142205/36‑1 (MQ=40)
                       GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT             >  1:2629139/1‑36 (MQ=38)
                        AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT            <  1:2383957/36‑1 (MQ=35)
                          TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA          <  1:7633118/36‑1 (MQ=1)
                          TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA          <  1:2884721/36‑1 (MQ=1)
                           GAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT         <  1:2535150/36‑1 (MQ=1)
                             AAAGCTGAAAAATACTTACTAAGGTGTTTTTTATTT       <  1:718532/36‑1 (MQ=0)
                             AAAGCTGAAAAATACTTACTAAGGCGTTTTTTATTT       >  1:7261732/1‑36 (MQ=1)
                              AAGCTGAAAAATACTTACTAAGGCGTTTTTTATTTG      <  1:1712965/36‑1 (MQ=1)
                              AAGCTGAAAAATACTTACTAAGGCGTTTTTTATTTG      <  1:5173651/36‑1 (MQ=1)
                                GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT    <  1:740207/36‑1 (MQ=1)
                                 CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG   >  1:6437874/1‑36 (MQ=1)
                                 CTGAAAAATACTTACTAAGGCGTTTTTTATTTGGTG   >  1:5682187/1‑36 (MQ=1)
                                  TGAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  >  1:6978267/1‑36 (MQ=1)
                                                                      
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCT...................................  <  REL606/35‑1
...................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  <  REL606/4629812‑4629778

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG