Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,856,145 | G→T | 25.5% | intergenic (+176/+91) | yeaP → / ← yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,856,145 | 0 | G→T | 25.5% | 4.2 ‑4.1 ‑0.0 | 43 | intergenic (+176/+91) | yeaP/yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Reads supporting (aligned to +/- strand): new base (11/1): ref base (16/15): total (27/16) | ||||||||||
Fisher's exact test strand distribution p-value = 1.71e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.65e-01 |
AAACAACGATTATTATGATGGGTGTGGCGATTATTGTCGTACTCGGCACTGAGCTGGGATGGTGGTAACGT > REL606/1856110‑1856180
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aaaCAACGATTATTATGATGGGTGTGGCGATTATTg < 1:4799292/36‑1 (MQ=255)
aaaCAACGATTATTATGATGGGTGTGGCGATTATTg > 1:4556708/1‑36 (MQ=255)
aacaacGATTATTATGATGGGTGTGGCGATTATTGt < 1:1959031/36‑1 (MQ=255)
aacGATTATTATGATGGGTGTGGCGATTATTGTCGt < 1:856280/36‑1 (MQ=255)
aacGATTATTATGATGGGTGTGGCGATTATTGTCGt > 1:348705/1‑36 (MQ=255)
aacGATTATTAAGATGCGTGTCGCGATTATTGTCGt < 1:5915469/36‑1 (MQ=21)
acGATTATTATGATGGGTGTGGCTATTATTTTCGTa < 1:4008794/36‑1 (MQ=38)
acGATTATTATGATGGGTGTGGCGATTATTGTCGTa < 1:1292183/36‑1 (MQ=255)
aattattATGATGGGTGTGGCGATTATTTTTGTagt > 1:1493955/2‑34 (MQ=25)
attattATGATGGGTGTGGCGATTATTTTTGTattt > 1:1860735/1‑33 (MQ=25)
tattatGATGGGTGTGGCGATTTTTTTTGTACTAgg > 1:4432617/1‑36 (MQ=16)
tattatGATGGGTGTGGCGATTATTTTTGTACTctg > 1:2082779/1‑34 (MQ=25)
tattatGATGGGTGTGGCGATTATTGTCGGACTCgg < 1:2409399/36‑1 (MQ=255)
attatGATGGGTGTGGCGATTATTTTCGTACTTGGc > 1:5132368/1‑36 (MQ=37)
attatGATGGGTGTGGCGATTATTGTCGTACTCGGc < 1:91481/36‑1 (MQ=255)
ttatGATGGGTGTGGCGATTATTTTTGTACTGGGCa > 1:5622395/1‑36 (MQ=25)
ttatGATGGGTGCGGCGATTATTGTCGTACTCGGCa > 1:4314467/1‑36 (MQ=255)
tatGATGGGTGTGGCGATTATTTTTGTACTCGGccc > 1:2223801/1‑34 (MQ=25)
tatGATGGGTGTGGCGATTATTGTCGTACTCGGccc > 1:252799/1‑34 (MQ=255)
gatgatgGGAGTGGCTATTATTGTCGTACTCGGCAc < 1:617577/35‑1 (MQ=37)
tgatgGGTGTGGCGATTATTTTCGTAATCGGCACTg > 1:5564351/1‑36 (MQ=37)
tgatgGGTGTGGCGATTATTGTCTTACTCTGCattt > 1:1408114/1‑33 (MQ=25)
gatgGGTGTGGCGATTCTTTTCGTAATCGGCACttt > 1:108216/1‑34 (MQ=21)
atgGGTGTGGCGATTATTTTTGTACTCGGCACTTAg > 1:1269028/1‑36 (MQ=25)
atgGGTGTGGCGATTATTTTAGTACTCGGCACttgg > 1:5548037/1‑33 (MQ=25)
atgGGTGTGGCGATTATTGTCGTACTCGGCACTGAg > 1:4324094/1‑36 (MQ=255)
tgGGTGTGGCGATTATTGTCGTACTCGGCACTGAGc < 1:1683064/36‑1 (MQ=255)
tgGGTGTGGCGATTATTGTCGTACTCGGCACTGAGc > 1:3958246/1‑36 (MQ=255)
tgGGTGTGGCAATTATTGTCGTACTCGGCACTGAGc < 1:863409/36‑1 (MQ=255)
gggTGTTGCGATTATTGTCGTACTCGGCGCTGAGCt < 1:1086489/36‑1 (MQ=37)
gggTGTGGCGATTATTGTCGTACTCGGCACTGGGCt > 1:5380582/1‑36 (MQ=255)
gggTGTGGCGATTATTGTCGTACTCGGCACTGAggt > 1:2817142/1‑34 (MQ=255)
gggTGTGGCGATTATTGTCGTACTCGGCACTGAGCt < 1:1328958/36‑1 (MQ=255)
gggTGTGGCGATTATTGTCGTAATCGGCATTGAGCt > 1:2641599/1‑36 (MQ=37)
ggTGCGGCGATTATTGCCGTAATCGGAACTCAGccg > 1:551418/1‑34 (MQ=9)
gtgtGGCGATTATTGTCGTAATAGGCACTGAGCTgg > 1:4036078/1‑36 (MQ=37)
gtgGCGATTATTGTCGTACTCGGCACTGAGCTGGGa > 1:5423904/1‑36 (MQ=255)
tgGCGATTATTGTCGTACTCGGCACTGAGCTGGGAt > 1:5452976/1‑36 (MQ=255)
ggCGATTATTGTCGTACTCGGCACTGAGCTGGGAtg > 1:3975326/1‑36 (MQ=255)
gATTATTGTCGTACTCGGCACTGAGCTGGGAtggtg < 1:4631436/36‑1 (MQ=255)
attattGTCGTACTCGGCACTGAGCTGGGAtggtgg > 1:4662088/1‑36 (MQ=255)
ttattGTCGTACTCGGCACTGAGCTGGGATggtggt < 1:5225587/36‑1 (MQ=255)
tattGTCGTACTCGGCACTGAGCTGGGATGGTGGTa > 1:1408428/1‑36 (MQ=255)
attGTCGTACTCGGCACTGAGCTGGGATGGTGGTaa < 1:3342176/36‑1 (MQ=255)
ttGTCGTACTCGGCACTGAGCTGGGATGGTGGTAAc < 1:1374542/36‑1 (MQ=255)
gTCGTACTCGGCACTGAGCTGGGATGGTGGTAACGt < 1:3691998/36‑1 (MQ=255)
gTCGTACTCGGCAATGAGCAGGGATGGTGGTAACGt > 1:5287406/1‑36 (MQ=38)
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AAACAACGATTATTATGATGGGTGTGGCGATTATTGTCGTACTCGGCACTGAGCTGGGATGGTGGTAACGT > REL606/1856110‑1856180
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 12 ≤
ATCG
< 23 ≤
ATCG
< 37 ≤
ATCG
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