New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3434228 =39 (0.860)6 (0.130) 4/52 NT 15.0% noncoding (2/768 nt) IS1 repeat region
?REL606 = 4568881 29 (0.480)coding (374/2151 nt) yjiY predicted inner membrane protein

CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCG  >  REL606/3434193‑3434263
                                   |                                   
cataaagtcctgtaccgcaccggccagcactacccc                                     <  1:3319849‑M1/1‑1 (MQ=255)
cataaagtcctgtaccgcaccggccagcactacccc                                     >  1:1766593‑M1/36‑36 (MQ=255)
 ataaagtcctgtaccgcaccggccagcactaccccc                                    <  1:5645477‑M1/2‑1 (MQ=255)
 ataaagtcctgtaccgcaccggccagcactaccccc                                    >  1:4731923‑M1/35‑36 (MQ=255)
 ataaagtcctgtaccgcaccggccagcactaccccc                                    >  1:7112631‑M1/35‑36 (MQ=255)
    catACACTAAATCAGTAAGTTGGCAGCATCACCGcc                                 >  1:3155514/1‑36 (MQ=32)
    catACACTAAATCAGTAAGTTGGCAGCATCACCGcc                                 >  1:4886735/1‑36 (MQ=32)
    aagtcctgtaccgcaccggccagcactacccCCGcc                                 >  1:3677276‑M1/32‑36 (MQ=255)
    aagtcctgtaccgcaccggccagcactacccCCGcc                                 >  1:1620601‑M1/32‑36 (MQ=255)
     atACACTAAATCAGTAAGTTGGCAGCATCACCGCCa                                >  1:4930262/1‑36 (MQ=35)
     atACACTAAATCAGTAAGTTGGCAGCATCACCGCCa                                <  1:6416652/36‑1 (MQ=35)
     agtcctgtaccgcaccggccagcactacccCCGCCa                                >  1:4229261‑M1/31‑36 (MQ=255)
     agtcctgtaccgcaccggccagcactacccCCCCCa                                <  1:2332728‑M1/6‑1 (MQ=255)
      tACACTAAATCAGTAAGTTGGCAGCATCACCGCCAg                               >  1:571441/1‑36 (MQ=38)
      tACACTAAATCAGTAAGTTGGCAGCATCACCGCCAg                               >  1:2825157/1‑36 (MQ=38)
      gtcctgtaccgcaccggccagcactacccCCGCcac                               <  1:6171601‑M1/7‑2 (MQ=255)
       acacTAAATCAGTAAGTTGGCAGCATCACCGCCAGc                              >  1:4484149/1‑36 (MQ=40)
          cTAAATCAGTAAGTTGGCAGCATCACCGGCAGcaca                           <  1:710204/36‑1 (MQ=255)
           tAAATCAGTAAGTTGGCAGCATCACCGCCAGCACAt                          >  1:7541261/1‑36 (MQ=255)
             aaacAGTAAGTTGGCAGCACCCCCGCCAGCACATCt                        <  1:7869930/33‑1 (MQ=21)
             aaTCAGTAAGTTGGCAGCATCACCGCCAGCACATCt                        >  1:4737498/1‑36 (MQ=255)
             aaTCAGTAAGTTAGCAGCATTGCCGCCAGCACATCt                        >  1:3592808/1‑36 (MQ=18)
               tCAGTAAGTTGGCAGCATCACCGCCAGCACATCTGc                      >  1:60635/1‑36 (MQ=255)
               tCAGTAAGTTGGCAGCATCACCGCCAGCACATCTGc                      >  1:6851969/1‑36 (MQ=255)
                cAGTAAGTTGGCAGCATCACCGCCAGCACATCTGcc                     >  1:5224533/1‑36 (MQ=255)
                 agaaaGTGGCCAGAACCACCGCCAGCACATCTGCCa                    <  1:7082348/33‑1 (MQ=12)
                 aaaaaGTTGCCAGAACCACCGCCAGCACATCTGCCa                    <  1:6685532/33‑1 (MQ=16)
                 aGTAAGTTGGCAGCATCACCGCCAGCACATCTGCCa                    >  1:5166697/1‑36 (MQ=255)
                  gTAAGTTGGCAGCATCACCGCCAGCACATCTGCCAg                   >  1:2637850/1‑36 (MQ=255)
                  gTAAGCTGGCAGCATCACCGCTAGCTCATCTGCAAg                   >  1:6001484/1‑36 (MQ=12)
                   tAAGTTGGCAGCATCACCGCCAGCACATCTGCCAGc                  >  1:6193938/1‑36 (MQ=255)
                   tAAGTTGGCAGCATCACCGCCAGCACATCTGCCAGc                  >  1:4788269/1‑36 (MQ=255)
                   tAAGTTGGCAGCATCACCGCCAGCACATCTGCCAGc                  >  1:1030627/1‑36 (MQ=255)
                   aaaGTCGGCACCACCACCGCCAGCACATCTGCCAGc                  <  1:5921674/35‑1 (MQ=21)
                    aaGTTGGCAGCATCACCGCCAGCACATCTGCCAGCa                 >  1:6300415/1‑36 (MQ=255)
                    aaGTGGGCAGCATCACCACCAGCACATCTGCCAGCa                 <  1:6259041/36‑1 (MQ=25)
                     aGTTGGCAGCATCACCGCCAGCACATCTGCCAGCAc                >  1:6141100/1‑36 (MQ=255)
                     aGTTGGCAGCATCACCGCCAGCACATCTGCCAGCAc                >  1:5076140/1‑36 (MQ=255)
                     aGTTGGCAGCATCACCGCCAGAACATCTGCCAGCAc                >  1:4914526/1‑36 (MQ=255)
                       ttGGCAGCATCACCGCCAGCACATCTGCCAGCACGt              >  1:1889771/1‑36 (MQ=255)
                       ttGGCAGCACCACCGCCAGCACATCTGCCAGCACGt              <  1:7734020/36‑1 (MQ=255)
                        tGGCAGCATCACCGCCAGCACATCTGCCAGCACGTa             >  1:883050/1‑36 (MQ=255)
                        tGGCACCACCACCGCCAGCACATCTGCCAGCACGTa             <  1:6587489/36‑1 (MQ=37)
                         ggCAGCATCACCGCCAGCACATCTGCCAGCACGTAg            >  1:1776940/1‑36 (MQ=255)
                          gcacaacccCCGCCAGCACATCTGCCAGCACGTAGc           >  1:2100801‑M1/10‑36 (MQ=255)
                           cagcaTCACCGCCAGCACATCTGCCAGCACGTAGCt          >  1:1415812/1‑36 (MQ=255)
                           cagcaTCACCGCCAGCACATCTGCCAGCACGTAGCt          >  1:5882822/1‑36 (MQ=255)
                           cagcaTCACCGCCAGCACATCTGCCAGCACGTAGCt          >  1:3237852/1‑36 (MQ=255)
                           caccacccCCGCCAGCACATCTGCCAGCACGTAGCt          >  1:1842650‑M1/9‑36 (MQ=255)
                            agcaTCACCGCCAGCACATCTGCCAGCACGTAGCTg         >  1:5971856/1‑36 (MQ=255)
                            agcaTCACCGCCAGCACATCTGCCAGCACGTAGCTg         >  1:5901678/1‑36 (MQ=255)
                            agcaTCACCGCCAGCACATCTGCCAGCACGTAGCTg         >  1:1276653/1‑36 (MQ=255)
                              catccCCGCCAGCACATCTGCCAGCACGTAGCTGTc       >  1:3208921‑M1/6‑36 (MQ=255)
                              caTCACCGCCAGCACATCTGCCAGCACGTAGCTGTc       >  1:1343648/1‑36 (MQ=255)
                              aacccCCGCCAGCACATCTGCCAGCACGTAGCTGTc       >  1:5668887‑M1/6‑36 (MQ=255)
                               cacACCGCCATCACATCTGCCAGCACGTAGCTGTcc      <  1:993214/34‑1 (MQ=37)
                               aTCACCGCCAGCACATCTGCCAGCACGTAGCTGTcc      >  1:4822566/1‑36 (MQ=255)
                               aTCACCGCCAGCACATCTGCCAGCACGTAGCTGTcc      >  1:4837843/1‑36 (MQ=255)
                                tCACCGCCAGCACATCTGCCAGCACGTAGCTGTCCt     >  1:2595342/1‑36 (MQ=255)
                                cccCCGCCAGCACATCTGCCAGCACGTAGCTGTCCt     >  1:4239415‑M1/4‑36 (MQ=255)
                                 ccCCGCCAGCACATCTGCCAGCACGTAGCTGTCCTg    >  1:3474554‑M1/3‑36 (MQ=255)
                                  aCCGCCAGCACATCTCCCAGAACGTAGCTGTCCTGc   >  1:5567590/1‑36 (MQ=37)
                                   CCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCg  >  1:7001345‑M1/1‑36 (MQ=255)
                                   CCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCg  <  1:3152702‑M1/36‑1 (MQ=255)
                                   CCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCg  >  1:570090‑M1/1‑36 (MQ=255)
                                   CCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCg  >  1:5449398‑M1/1‑36 (MQ=255)
                                   |                                   
CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCG  >  REL606/3434193‑3434263

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG