Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,508,110 | C→A | 25.0% | intergenic (‑108/‑65) | yddH ← / → nhoA | hypothetical protein/N‑hydroxyarylamine O‑acetyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,508,110 | 0 | C→A | 25.0% | 5.4 ‑3.5 0.0 | 41 | intergenic (‑108/‑65) | yddH/nhoA | hypothetical protein/N‑hydroxyarylamine O‑acetyltransferase |
Reads supporting (aligned to +/- strand): new base (1/11): ref base (14/15): total (15/26) | ||||||||||
Fisher's exact test strand distribution p-value = 2.99e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCGATTTGCAAACGTGATGCATGTCCGCGATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGTTATA > REL606/1508075‑1508144
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gCGATTTGCAAACGTGATGCATGTCCGCGATCGcac < 1:7742898/36‑1 (MQ=255)
cGATTTGCAAACGTGATGCATGTCCGCGATCGcaca < 1:1092174/36‑1 (MQ=255)
cGATTTGCAAACGTGATGCATGTCCGCGATCGcaca < 1:2903370/36‑1 (MQ=255)
gATTTGCAAACGTGATGCATGTCCGCGATCGCACaa < 1:3870945/36‑1 (MQ=255)
aTTTGCAAACGTGATGCATGTCCGCGATCGCACaaa < 1:2587556/36‑1 (MQ=255)
aTTTGCAAACGTGATGCATGTCCGCGATCGCACaaa < 1:2429165/36‑1 (MQ=255)
tttGCAAACGTGATGCATGTCCGCGATCGCACaaaa > 1:120149/1‑36 (MQ=255)
ttGCAAACGTGATGCATGTCCGCGATCGCACAAAAt < 1:7191794/36‑1 (MQ=255)
ttGCAAACGTGATGCATGTCCGCGATCGCACAAAAt < 1:4662972/36‑1 (MQ=255)
ttGCAAACGTGATGCATGTCCGCGATCGCAAAAAAt > 1:3723060/1‑36 (MQ=255)
tGCAAACGTGATGCATGTCCGCGATCGCACAAAATa < 1:7291925/36‑1 (MQ=255)
cAAACGTGATGCATGTCCGCGATCGCACAAAATAGc < 1:774887/36‑1 (MQ=255)
cAAACGTGATGCATGTCCGCGATCGCACAAAATAGc < 1:3039296/36‑1 (MQ=255)
cGTGATGCATGTCCGCGATCGCACAAAATAGCCGGt > 1:3879088/1‑36 (MQ=255)
cGTGATGCATGTCCGCGATCGCACAAAATAGCCGGt > 1:4124833/1‑36 (MQ=255)
cGTGATGCATGTCCGCGATCGCACAAAATAGCAGGt < 1:72542/36‑1 (MQ=255)
cGTGATGCATGTCCGCGATCGCAAAAAATAGCCGGt < 1:5319932/36‑1 (MQ=255)
gTGATGCATGTCCGCGATCGCACAAAATAGCCGGTg < 1:3151003/36‑1 (MQ=255)
gTGAAGCATGTCCTCGATCGCACAAAATAGCCGGTg < 1:7005395/36‑1 (MQ=38)
tGATGCATGTCCGCGATCGCAAAAAATAGCCGGTgc < 1:4852372/36‑1 (MQ=255)
ggATGCATGTCCGCGATCGCACAAAATAGCCGGTgc < 1:1860788/35‑1 (MQ=255)
gATGCATGTCCGCGATCGCACAAAATAGCCGGTgcg < 1:1644068/36‑1 (MQ=255)
ttcATGTCCGCGATCGCAAAAAATAGCCGGTgcggc < 1:3704081/34‑1 (MQ=37)
tGCATGTCCGCGATCGCAAAAAATAGCCGGTgcggc < 1:4943918/36‑1 (MQ=255)
cATGTCCGCGATCGCACAAAATAGCCGGTGCGGCGt > 1:1807340/1‑36 (MQ=255)
cATGTCCGCGATCCCACAAAATAGCCGGTGCGGCGt > 1:5780480/1‑36 (MQ=255)
aTGTCCGCGATCGCACAAAATAGCCGGTGCGGCGTc > 1:1897836/1‑36 (MQ=255)
tGTCCGCGATCGCACAGAATAGCCGGTGCGGCGTCt < 1:7705730/36‑1 (MQ=255)
gTCCGCGATCGCACAAAATAGCCGGTGCGGCGTCTa > 1:5272824/1‑36 (MQ=255)
tCCGCGATCGAAAAAAATAGCCGGTGCGGCGTCTAt < 1:3331938/36‑1 (MQ=37)
cgcgATCGCAAAAAATAGCCGGTGCGGCGTCTATTc < 1:6015548/36‑1 (MQ=255)
gcgATCGCACAAAATAGCCGGTGCGGCGTCTATTcc > 1:185379/1‑36 (MQ=255)
gcgATCGCACAAAAGAGCCGGTGCGGCGTCTATTcc > 1:325531/1‑36 (MQ=255)
gcgATCGCAAAAAATAGCCGGTGCGGCGTCTATTcc < 1:6005591/36‑1 (MQ=255)
cgATCGCACAAAATAGCCGGTGCGGCGTCTATTCCa > 1:1416776/1‑36 (MQ=255)
gATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAg > 1:2573268/1‑36 (MQ=255)
aTCGCACAAAATAGCCGGTGCGGCGTCTATTCCAgg > 1:890060/1‑36 (MQ=255)
aTCGCAAAAAATATCCGGTGCGGCGTCTATTCCAgg < 1:351226/36‑1 (MQ=37)
aTCGCAAAAAATAGCCGGTGCGGCGTCTATTCCAgg < 1:69741/36‑1 (MQ=255)
aTCGCAAAAAATAGCCGGTGCGGCGTCTATTCCAgg < 1:3002124/36‑1 (MQ=255)
aTCACAAAAAATAGCCGGTGCGGCGTCTATTCCAgg < 1:4394800/36‑1 (MQ=37)
tCGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGt > 1:7368727/1‑36 (MQ=255)
cGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGtt < 1:372688/36‑1 (MQ=255)
gCACAAAATAGCCGGTGCGGCGTCTATTCCAGGTta > 1:2483999/1‑36 (MQ=255)
acaAACTAGCCGGTGCGGCGTCTATTCCAGGTtata < 1:2499822/36‑1 (MQ=255)
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GCGATTTGCAAACGTGATGCATGTCCGCGATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGTTATA > REL606/1508075‑1508144
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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