New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 129226920 (0.470)5 (0.120) 3/52 NT 16.4% intergenic (+110/+34) galU/hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
?REL606 = 2173874 31 (0.540)coding (452/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent

TCAGTGATTGGATCATCGTGTATAGGCGCATCGGTCATCGGCGGTATTTGTAACAACTCCGGCGGCTCGC  >  REL606/2173840‑2173909
                                  |                                   
tCAGTGATTGGATCATCGTGTATAGGCGCATCGGTc                                    >  1:1276444‑M2/1‑35 (MQ=255)
tCAGTGATTGGATCATCGTGTATAGGCGCATCGGTc                                    >  1:128296‑M2/1‑35 (MQ=255)
 cAGTGATTGGATCATCGTGTATAGGCGCATCGGTca                                   >  1:962562‑M2/1‑34 (MQ=255)
  aGTGATTGGATCATCGTGTATAGGCGCATCGGTcat                                  >  1:4774758‑M2/1‑33 (MQ=255)
  aGTGATTGGATCATCGTGTATAGGCGCATCGGTcat                                  <  1:3132785‑M2/36‑4 (MQ=255)
   gTGATTGGATCATCGTGTATAGGCGCATCTGTcatc                                 >  1:3545356‑M2/1‑32 (MQ=255)
   gTGATTGGATCATCGTGTATAGGCGCATCGGTcatc                                 >  1:7172796‑M2/1‑32 (MQ=255)
    tGATTGGATCATCGTGTATAGGCGCATCGGTcatcg                                >  1:2407452‑M2/1‑31 (MQ=255)
    tGATTGGATCATCGTGTATAGGCGCATCGGTcatcg                                >  1:6114231‑M2/1‑31 (MQ=255)
     gATTGGATCATCGTGCATAGGCGCATCGGTCTTcgg                               >  1:4150606/1‑36 (MQ=37)
      aTTGGATCATCGTGTATAGGCTCATCGGTcatcggc                              <  1:367687‑M2/36‑8 (MQ=255)
      aTTGGATCATCGTGTATAGGCGCATCGGTcatcggc                              >  1:3410245‑M2/1‑29 (MQ=255)
       ttGGATCATCGTGTATAGGCGCATCGGTcatcggcg                             >  1:6024974‑M2/1‑28 (MQ=255)
       ttGGATCATCGTGTATAGGCGCATCGGTcatcggcg                             >  1:5375511‑M2/1‑28 (MQ=255)
       ttGGATCATCGTGTATAGGCGCATCGGTcatcggcg                             <  1:735193‑M2/36‑9 (MQ=255)
        tGGATCATCGTGTATAGGCGCATCGGTcatcggcgg                            >  1:5230421‑M2/1‑27 (MQ=255)
         ggATCATCGTGTATAGGCGCATCGGTCATCGGCGGt                           <  1:417531/36‑1 (MQ=255)
           atcatcGTGTATAGGCGCATCGGTCATCGGCGGTAt                         <  1:7171975/36‑1 (MQ=255)
            tcatcGTGTATAGGCGCATCGGTcatcggcggggtt                        <  1:7127751‑M2/36‑14 (MQ=255)
            tcatcGTGTATAGGCGCATCGGTCATCGGCGGTAtt                        <  1:3080350/36‑1 (MQ=255)
            tcatcGTGTATAGGCGCATCGGTCATCGGCGGTAtt                        <  1:5094312/36‑1 (MQ=255)
            tcatcGTGTATAGGCGCATCGGTCATCGGCGGTAtt                        <  1:4798723/36‑1 (MQ=255)
             catcGTGTATAGGCGCATCGGTCATCGGCGGTAttt                       <  1:3808053/36‑1 (MQ=255)
             catcGTGTATAGGCGCATCGGTCATCGGCGGTAttt                       <  1:1833786/36‑1 (MQ=255)
              atcGTGTATAGGCGCATCGGTCATCGGCGGTATTTg                      <  1:1167308/36‑1 (MQ=255)
              atcGTGTATAGGCGCATCGGTCATCGGCGGTATTTg                      <  1:2170401/36‑1 (MQ=255)
              atcGTGTATAGGCGCATCGGTCATCGGCGGTATTTg                      <  1:893310/36‑1 (MQ=255)
               tcGTGTATAGGCGCATCGGTcatcggcggggttttt                     <  1:5951049‑M2/36‑17 (MQ=255)
               tcGTGTATAGGCGCATCGGTcatcggcggggttttt                     <  1:3039471‑M2/36‑17 (MQ=255)
               tcGTGTATAGGCGCATCGGTCATCGGCGGTATTTGt                     <  1:5908211/36‑1 (MQ=255)
                cGTGTATAGGCGCATCGGTcatcggcggggtttttt                    <  1:3856905‑M2/36‑18 (MQ=255)
                cGTGTATAGGCGCATCGGTCATCGGCGGTATTTGTa                    <  1:739238/36‑1 (MQ=255)
                  tgtATAGGCGCATCGGTcatcggcgggcttttttat                  <  1:6972855‑M2/36‑20 (MQ=255)
                  tgtATAGGCGCATCGGTCATCGGCGGTATTTGTaac                  <  1:7163381/36‑1 (MQ=255)
                  tgtATAGGCGCATCGGTCATCGGCGGTATTTGTaac                  <  1:6149274/36‑1 (MQ=255)
                   gtATAGGCGCATCGGTCATCGGCGGTATTTGTaaca                 <  1:4186327/36‑1 (MQ=255)
                   gtATAGGCGCATCGGTCATCGGCGGTATTTGTaaca                 <  1:6892184/36‑1 (MQ=255)
                    tataGGCGCATCGGTCATCGGCGGTATTTGTaacaa                <  1:6028970/36‑1 (MQ=255)
                    tataGGCGCATCGGTCATCGGCGGGGTTTTTaatta                >  1:6107708/1‑33 (MQ=16)
                    tataAGCTCATCGGTCATCGGCGGTATTTTTaacaa                <  1:391996/36‑1 (MQ=25)
                     ataGGCGCATCGGTCATCGGCGGTATTTGTaacaac               <  1:5031959/36‑1 (MQ=255)
                      taGGCGCATCGGTCATCGGCGGTATTTGTAACAACt              <  1:4449471/36‑1 (MQ=255)
                      taGGCGCATCGGTCATCGGCGGTATTTGTAACAACt              <  1:4611067/36‑1 (MQ=255)
                       aGGCGCATCGGTCATCGGCGGTATTTGTAACAACTc             <  1:6486084/36‑1 (MQ=255)
                       aGGCGCATCGGTCATCGGCGGTATTTGTAACAACTc             <  1:1204693/36‑1 (MQ=255)
                        ggCTCATCGGTCATCGGCGGTATTTGTAACAACTcc            <  1:3706066/36‑1 (MQ=255)
                        ggCGCATCGGTCATCGGCGGTATTTGTAACAACTcc            <  1:1130791/36‑1 (MQ=255)
                           gcATCGGTGATCGGCGGTATTTGTAACAACTCcggc         <  1:2379566/36‑1 (MQ=255)
                            cATCGGTCATCGGCGGTATTTGTAACAACTCcggcg        <  1:5778512/36‑1 (MQ=255)
                                ggTCATCGGCGGTATTTGTAACAACTCCGGCGGCTc    <  1:7171133/36‑1 (MQ=255)
                                 gTCATCGGCGGTATTTGTAACAACTCCGGCGGCTCg   <  1:1675886/36‑1 (MQ=255)
                                  tCATCGGCGGTATTTGTAACAACTCCGGCGGCTCGc  <  1:2668163/36‑1 (MQ=255)
                                  |                                   
TCAGTGATTGGATCATCGTGTATAGGCGCATCGGTCATCGGCGGTATTTGTAACAACTCCGGCGGCTCGC  >  REL606/2173840‑2173909

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG