New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640121 =40 (0.730)7 (0.130) 6/64 NT 16.9% intergenic (+39/+16) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2994081 = 29 (0.480)coding (735/2136 nt) speC ornithine decarboxylase, constitutive

AGATACTCTTCATTAAAACAGTGCGCATCAATACCGCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAG  >  REL606/2994046‑2994116
                                   |                                   
aGATACTCTTCATTAAAACAGTGCGCATCAATACCg                                     >  1:6528295/1‑36 (MQ=255)
 gagaCTCTTCATTAAAACAGTGCGCATCAATACCGc                                    <  1:1427421/33‑1 (MQ=255)
 gATACTCTTCATTAAAACAGTGCGCATCAATACCGc                                    <  1:3510103/36‑1 (MQ=255)
  aTACTCTTCATTAAAACAGTGCGCATCAATACCGcc                                   >  1:4454774/1‑36 (MQ=255)
      tctTCATTAAAACAGTGCGCATCAATACCGCCAATg                               >  1:4746048/1‑36 (MQ=255)
       ctTCATTAAAACAGTGCGCATCAATACCGCCAATGa                              >  1:2990773/1‑36 (MQ=255)
        ttCATTAAAACAGTGCGCATCAATACCGCCAATGaa                             >  1:1786800/1‑36 (MQ=255)
         tCATTAAAACAGTGCGCATCAATACCGCCAATGaaa                            >  1:777038/1‑36 (MQ=255)
           aTTAAAACAGGGCGCATCAATACCGCCAATGAAAca                          >  1:4651258/1‑35 (MQ=255)
             tAAAACAGTGCGCATCAATACCGCCAATGAAACCaa                        >  1:791840/1‑36 (MQ=255)
             tAAAACAGTGCGCATCAATACCGCCAATGAAACCaa                        >  1:7627547/1‑36 (MQ=255)
             tAAAACAGTGCGCATCAATACCGCCAATGAAACCaa                        >  1:2029216/1‑36 (MQ=255)
              aaaaCAGTGCGCAGCAATACCGCCAATGAAACCaaa                       >  1:5460243/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:6281503/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:4039211/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:1125672/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:1206883/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:2235390/1‑36 (MQ=255)
               aaaCAGTGCGCATCAATACCGCCAATGAAACCAAAc                      >  1:2395507/1‑36 (MQ=255)
                 aaagagcaaaaaaaaaccGCCAATGAAACCAAACgg                    <  1:942499‑M2/18‑1 (MQ=255)
                    gaccaaaaaaaaaccGCCAATGAAACCAAACGGGtt                 <  1:2927968‑M2/21‑1 (MQ=255)
                     tGCGCATCAATACCGCCAATGAAACCAAACGGGTTa                >  1:6493280/1‑36 (MQ=255)
                      gcgcATCAATACCGCCAATGAAACCAAACGGGTTAc               >  1:3197069/1‑36 (MQ=255)
                       cgcATCAATACCGCCAATGAAACCAAACGGGTTACg              >  1:1266120/1‑36 (MQ=255)
                        gcATCAATACCGCCAATGAAACCAAACGGGTTACGt             >  1:2330488/1‑36 (MQ=255)
                        aaaaaaaaaccGCCAATGAAACCAAACGGGTTACGt             <  1:1837895‑M2/25‑1 (MQ=255)
                         aaaaaaacccGCCAATGAAACCAAACGGGTTACGTg            <  1:7165586‑M2/26‑1 (MQ=255)
                          aaaaaaaccGCCAATGAAACCAAACGGGTTACGTGa           <  1:4012726‑M2/27‑1 (MQ=255)
                          aTCAATACCGCCAATGAAACCAAACGGGTTACGTGa           >  1:5721883/1‑36 (MQ=255)
                          aTCAATACCGCCAATGAAACCAAACGGGTTACGTGa           >  1:3473189/1‑36 (MQ=255)
                          aTCAATACAGACAATGAAACCAAACGGGTCACGTGa           >  1:7266628/1‑36 (MQ=37)
                           aaagaaccGCCAATGAAACCAAACGGGTTACGTGaa          <  1:1786285‑M2/28‑1 (MQ=255)
                           aaaaaaccGCCAATGAAACCAAACGGGTTACGTGaa          <  1:2266316‑M2/28‑1 (MQ=255)
                            cAATACCGCCAATGAAACCAAACGGGTTACGTGAAg         >  1:786277/1‑36 (MQ=255)
                             aaTACCGCCAATGAAACCAAACGGGTTACGTGAAGc        >  1:2230729/1‑36 (MQ=255)
                              aTACCGCCAATGAAACCAAACGGGTTACGTGAAGCt       >  1:4126571/1‑36 (MQ=255)
                               tACCGCCAATGAAACCAAACGGGTTACGTGAAACtt      >  1:5594062/1‑36 (MQ=255)
                                accGCCAATGAAACCAAACGGGTTACGTGAAGCTTc     >  1:5283523‑M2/4‑36 (MQ=255)
                                accGCCAATGAAACCAAACGGGTTACGTGAAGCTTc     >  1:897991‑M2/4‑36 (MQ=255)
                                accGCCAATGAAACAAAACGGGTTACGTGAAGCTTc     >  1:5450742‑M2/4‑36 (MQ=255)
                                 ccGCCAATGAAACCAAACGGGTTACGTGAAGCTTcc    <  1:1541012‑M2/34‑1 (MQ=255)
                                 ccGCCAATGAAACCAAACGGGTTACGTGAAGCTTcc    <  1:27855‑M2/34‑1 (MQ=255)
                                  cGCCAATGAAACCAAACGGGTTACGTGAAGCTTCCa   <  1:5938475‑M2/35‑1 (MQ=255)
                                   gCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAg  >  1:5390905/1‑36 (MQ=255)
                                   gCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAg  <  1:3286690/36‑1 (MQ=255)
                                   |                                   
AGATACTCTTCATTAAAACAGTGCGCATCAATACCGCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAG  >  REL606/2994046‑2994116

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG