Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,254,492 | 0 | G→A | 6.6% | 0.2 ‑5.1 0.0 | 86 | 622 | argG | argininosuccinate synthase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/8): ref base (40/37): total (40/46) | ||||||||||
Fisher's exact test strand distribution p-value = 6.08e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTCAAAATCGTCAACCC > REL606/3254457‑3254526
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aCATGCTTGGTGCAACGCATGAAGCGAAGGATCTgg > 1:4601418/1‑36 (MQ=255)
aCATGCTTGGTGCAACGCATGAAGCGAAGGATCTgg < 1:6593910/36‑1 (MQ=255)
aCATGCTTGGTGCAACGCATGAAGCGAAGGATCTgg < 1:7204375/36‑1 (MQ=255)
cATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGa < 1:2384450/36‑1 (MQ=255)
cATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGa > 1:943458/1‑36 (MQ=255)
aTGCTTGGTGCAACGCATGAAGCGAAGGATCTGGaa < 1:2748863/36‑1 (MQ=255)
tGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt < 1:2344684/36‑1 (MQ=255)
tGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt < 1:2416808/36‑1 (MQ=255)
tGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt > 1:1813140/1‑36 (MQ=255)
gCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATa > 1:3976739/1‑36 (MQ=255)
gCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATa > 1:779642/1‑36 (MQ=255)
cTTGGTGCAACGCATGAAGCGAAGGATCTGGAATAc < 1:4058048/36‑1 (MQ=255)
ttGGTGCAACGCATGAAGCGAAGGATCTGGAATAcc < 1:842623/36‑1 (MQ=255)
ttGGTGCAACGCATGAAGCGAAGGATCTGGAATAcc < 1:337029/36‑1 (MQ=255)
tGGTGCAACGCATGAAGCGAAGGATCTGGAATACct > 1:1156612/1‑36 (MQ=255)
tGGTGCAACGCATGAAGCGAAGGATCTGGAATACct < 1:2569897/36‑1 (MQ=255)
ggTGCAACGCATGAAGCGAAGGATCTGGAATACctc < 1:2728395/36‑1 (MQ=255)
ggTGCAACGCATGAAGCGAAGGATCTGGAATACctc < 1:3281561/36‑1 (MQ=255)
ggTGCAACGCATGAAGCGAAGGATCTGGAATACctc > 1:5833342/1‑36 (MQ=255)
gTGCAACGCATGAAGCGAAGGATCTGGAATACctcc > 1:6000548/1‑36 (MQ=255)
gTGCAACGCATGAAGCGAAGGATCTGGAATACctcc > 1:1047201/1‑36 (MQ=255)
tGCAACGCATGAAGCGAAGGATCTGGAATACctcca < 1:4323716/36‑1 (MQ=255)
tGCAACGCATGAAGCGAAGGATCTGGAATACctcca < 1:179440/36‑1 (MQ=255)
tGCAACGCATGAAGCGAAGGATCTGGAATACctcca > 1:1526286/1‑36 (MQ=255)
tGCAACGCATGAAGCGAAGGATCTGGAATACctcca < 1:5518963/36‑1 (MQ=255)
gCAACGCATGAAGCGAAGGATCTGGAATACctccac > 1:4716144/1‑36 (MQ=255)
cAACGAATAAAGCGAAGGATCTGGAATACctccact < 1:2061237/36‑1 (MQ=37)
aaCGCATGAAGCGAAGGATCTGGAATACctccactc > 1:2487865/1‑36 (MQ=255)
aaCGCATGAAGCGAAGGATCTGGAATACctccactc < 1:3402205/36‑1 (MQ=255)
aCGCATGAAGCGAAGGATCTGGAATACctccactcc > 1:6519635/1‑36 (MQ=255)
cGCATGAAGCGAAGGATCTGGAATACctccactcca < 1:1340799/36‑1 (MQ=255)
gCATGAAGCGAAGTATCTGGAATACCTCCACTCCAg > 1:3212488/1‑36 (MQ=255)
cATGAAGCGAAGGATCTGGAATACCTCCACTCCAGc > 1:6883400/1‑36 (MQ=255)
cATGAAGCGAAGGATCTGGAATACCTCCACTCCAGc < 1:7310308/36‑1 (MQ=255)
cATGAAGCGAAGGATCTGGAATACCTCCACTCCAGc < 1:5346470/36‑1 (MQ=255)
cATGAAGCGAAGGATCNGGAATACCTCCACTCCAGc < 1:2148436/36‑1 (MQ=255)
aTGAAGCGAAGGATCTGGAATACCTCCACTCCAGCg > 1:6443987/1‑36 (MQ=255)
aTGAAGCGAAGGATCTGGAATACCTCCACTCCAGCg > 1:7378303/1‑36 (MQ=255)
tGAAGCGAAGGATCTGGAATACCTCCACTCCAGCGt < 1:5340029/36‑1 (MQ=255)
tGAAGCGAAGGATCTGGAATACCTCCACTCCAGCGt < 1:1061314/36‑1 (MQ=255)
gAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTc < 1:1054987/36‑1 (MQ=255)
gAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTc < 1:637472/36‑1 (MQ=255)
gAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTc > 1:5837456/1‑36 (MQ=255)
gAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTc > 1:2364012/1‑36 (MQ=255)
gAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTc > 1:4796025/1‑36 (MQ=255)
aaGCGAAGGATCTGGAATACCTCCACTCCAGCGTCa < 1:174331/36‑1 (MQ=255)
aaGCGAAGGATCTGGAATACCTCCACTCCAGCGTCa < 1:6577076/36‑1 (MQ=255)
aGCGAAGGATCTGGAATACCTCCACTCCAGCGTCaa < 1:5930971/36‑1 (MQ=255)
aGCGAAGGATCTGGAATACCTCCACTCCAGCGTCaa < 1:942889/36‑1 (MQ=255)
aGCGAAGGATCTGGAATACCTCCACTCCAGCGTCaa > 1:2440444/1‑36 (MQ=255)
aGCGAAGGATCTGGAATACCTCCACTCCACCGCCaa > 1:7148640/1‑36 (MQ=37)
aGCGAAGGATCTGAAATACCTCCACTCCAGCGTCaa < 1:6959411/36‑1 (MQ=255)
aGCGAAGGATCTGAAATACCTCCACTCCAGCGTCaa < 1:1588941/36‑1 (MQ=255)
cGAAGGATCTGGAATACCTCCACTCCAGCGTCaaaa < 1:6018449/36‑1 (MQ=255)
cGAAGGATCTGGAATACCTCCACTCCAGCGTCaaaa > 1:746210/1‑36 (MQ=255)
cGAAGCATCTGCAATACCTCCACTCCAGCGTCaaaa < 1:4988028/36‑1 (MQ=37)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt > 1:4705681/1‑36 (MQ=255)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt > 1:658856/1‑36 (MQ=255)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt > 1:1708913/1‑36 (MQ=255)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt > 1:2799284/1‑36 (MQ=255)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt > 1:5986635/1‑36 (MQ=255)
gAAGGATCTGGAATACCTCCACTCCAGCGTCAAAAt < 1:7439993/36‑1 (MQ=255)
aaGGATCTGGAATACCTCCACGCCAGCGTCAAAATc > 1:6788937/1‑36 (MQ=255)
aaGGATCTGGAAAACCTCCACTCCAGCGTCAAAATc < 1:95271/36‑1 (MQ=255)
aaGGATCTGAAATACCTCCACTCCAGCGTCAAAATc < 1:4461267/36‑1 (MQ=255)
aaGAATCTGAAATACCTCCACTCCAGCGTCAAAATc < 1:3705179/36‑1 (MQ=37)
aGGATCTGGAATACCTCCACTCCAGCGTCACAATCg > 1:1394198/1‑36 (MQ=255)
aGGATCTGGAATACCTCCACTCCAGCGTCAAAATCg > 1:1860065/1‑36 (MQ=255)
aGGATCTGGAATACCTCCACTCCAGCGTCAAAATCg > 1:6772366/1‑36 (MQ=255)
aGGATCTGGAATACCTCCACAAAAGGGTCAAAATCg > 1:3066766/1‑36 (MQ=16)
ggATCTGGAATACCTCCACTCCAGCGTCAAAATCGt < 1:831535/36‑1 (MQ=255)
ggATCTAGAATACCTCCACTCCAGCGTCAAAATCGt < 1:141811/36‑1 (MQ=255)
gATCTGGAATACCTCCACTCCAGCGTCAAAATCGTc > 1:496408/1‑36 (MQ=255)
gATCTGGAATACCTCCACTCCAGCGTCAAAATCGTc < 1:152332/36‑1 (MQ=255)
aaTCTGAAATACCTCCACTCCAGCGTCAAAATCGTc < 1:3980924/35‑1 (MQ=255)
ctCTGGAATACCTCCACTCCAGCGTCAAAATCGTCa < 1:5057116/35‑1 (MQ=255)
aTCTGGAATCCCTCCACTCCAGCGTCAAAATCGTCa < 1:4407175/36‑1 (MQ=255)
aTCTGGAATACCTCCACTCCAGCGTCAAAATCGTCa > 1:2126570/1‑36 (MQ=255)
aTCTGGAATACCTCCACGCCGGCGTCACAATCGTCa > 1:4210310/1‑36 (MQ=37)
tCTGGAATACCTCCACTCCAGCGTCAAAATCGTCaa > 1:6504032/1‑36 (MQ=255)
tCTGGAATACCTCCACTCCAGCGTCAAAATCGTCaa < 1:2676645/36‑1 (MQ=255)
tCTGAAATACCTCCACTCCAGCGTCAAAATCGTCaa < 1:4560749/36‑1 (MQ=255)
tCTGAAATACCTCCACTCCAGCGTCAAAATCGTCaa < 1:1737121/36‑1 (MQ=255)
tCTGAAATACCTCCACTCCAGCGTCAAAATCGTCaa < 1:5628334/36‑1 (MQ=255)
cTGGAATACCTCCACTCCAGCGTCAAAATCGTCAAc > 1:5387297/1‑36 (MQ=255)
tGGAATACCTCCACTCCAGCGTCAAAATCGTCAAcc > 1:4912289/1‑36 (MQ=255)
tGGAATACCTCCACTCCAGCGTCAAAATCGTCAAcc < 1:373297/36‑1 (MQ=255)
tGGAATACCTCCACTCCAGCGTCAAAATCGTCAAcc > 1:2624090/1‑36 (MQ=255)
tGGAATACCTCCACTCCAGCGTCAAAATAGTAAAcc > 1:5873128/1‑36 (MQ=37)
ggAATACCTCCACTCCAGCGTCAAAATCGTCAAccc < 1:1136826/36‑1 (MQ=255)
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ACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCCACTCCAGCGTCAAAATCGTCAACCC > REL606/3254457‑3254526
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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