Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,928,513 | 0 | T→A | 6.0% | 0.1 ‑5.6 0.0 | 71 | 297 | rho | transcription termination factor Rho |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/6): ref base (41/23): total (42/29) | ||||||||||
Fisher's exact test strand distribution p-value = 3.62e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATT > REL606/3928479‑3928547
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gTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa > 1:2156757/1‑36 (MQ=255)
gTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa < 1:2029078/36‑1 (MQ=255)
gTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa > 1:897690/1‑36 (MQ=255)
gTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa > 1:1062159/1‑36 (MQ=255)
tttCAACCTCCGCACTGGTGATACCATCTCTGGTaa < 1:5577118/36‑1 (MQ=255)
ttCAACCTCCGCACTGGTGATACCATCTCTGGTAAg > 1:3652901/1‑36 (MQ=255)
ttCAACCTCCGCACTGGTGATACCATCTCTGGTAAg < 1:7087186/36‑1 (MQ=255)
ttCAACCTCCGCACTGGTGATACCATCTCTGGTAAg > 1:3985326/1‑36 (MQ=255)
ttCAACCTCCGCACTGGTGATACCATCTCTGGTAAg < 1:6741143/36‑1 (MQ=255)
tCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa > 1:4617118/1‑36 (MQ=255)
tCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa > 1:7369062/1‑36 (MQ=255)
tCAACCTCCGCACTGGTGATACCATCTCTGGTAAGa < 1:1884993/36‑1 (MQ=255)
cAACCTCCGCACTGGTGATACCATCTCTGGTAAGAt < 1:2615332/36‑1 (MQ=255)
cAACCTCCGCACGGGTGATACCATCTCTGGTAAGAt > 1:4259113/1‑36 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTc < 1:607213/36‑1 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTc > 1:3249638/1‑36 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTc < 1:2175158/36‑1 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTc < 1:1759647/36‑1 (MQ=255)
aCCTCCGCACTGGTGATACCATCTCTGGTAAGATTc < 1:1680227/36‑1 (MQ=255)
ccTCCGCACTGGTGATACCATCTCTGGTAAGATTcg > 1:3932192/1‑36 (MQ=255)
ccTCCGCACTGGTGATACCATCTCTGGTAAGATTcg > 1:4514410/1‑36 (MQ=255)
cTCCGCACTGGTGATACCATCTCTGGTAAGATTcgc < 1:606445/36‑1 (MQ=255)
tacGCGCTGGTTATACCATCTATGGTAAGATTcgcc < 1:697339/34‑1 (MQ=25)
tCCGCACTGGTGATACCATCTCTGGTAAGATTcgcc < 1:1465118/36‑1 (MQ=255)
ccGCACTGGTGATACCATCTCTGGTAAGATTcgccc < 1:5562204/36‑1 (MQ=255)
ccGCACTGGTGATACCATCTCTGGTAAGATTcgccc > 1:1891718/1‑36 (MQ=255)
ccGCACTGGTGATACCATCTCTGGTAAGATTcgccc > 1:6596757/1‑36 (MQ=255)
ccGCACTGGTGATACCATCTCTGGTAAGATTcgccc < 1:3187871/36‑1 (MQ=255)
cGCACTGGTGATACCATCTCTGGTAAGATTcgcccg < 1:5181946/36‑1 (MQ=255)
gCACTGGTGATACCATCTCTGGTAAGATTcgcccgc < 1:2709485/36‑1 (MQ=255)
gCACTGGTGATACCATCTCTGGTAAGATTcgcccgc < 1:7439913/36‑1 (MQ=255)
cACTGGTGATACCATCTCTGGTAAGATTcgcccgcc > 1:5758840/1‑36 (MQ=255)
cACGGGTGATCCCATCTCTGGTAAGATTcgcccgcc < 1:3540279/36‑1 (MQ=37)
aCTGGTGATACCATCTCTGGTAAGATTCGCcctccg > 1:3709159/1‑36 (MQ=255)
aCTGGTGATACCATCTCTGGTAAGATTCGCccgccg > 1:6286886/1‑36 (MQ=255)
aCTGGTGATACCATCTCTGGTAAGATTCGCccgccg > 1:2684922/1‑36 (MQ=255)
aCTGGTGATACCATCTCTGGTAAGATTCGCccgccg > 1:4464289/1‑36 (MQ=255)
aCTGGTGATACCATCTCTGGTAAGATTCGCccgccg > 1:4777102/1‑36 (MQ=255)
aCTGGTGATACCATCTCTGGGAAGATTCGCccgccg > 1:897038/1‑36 (MQ=255)
cTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGa > 1:269466/1‑36 (MQ=255)
tGGTGATACCATCTCTGGTAAGATTCGCCCGCCGaa > 1:1651218/1‑36 (MQ=255)
tGGTGATACCATCTCTGGTAAGATTCGCCCGCCGaa > 1:7698397/1‑36 (MQ=255)
ggTGATACCATCTCTGGTAAGATTCGCCCGCCGaaa > 1:4215777/1‑36 (MQ=255)
gTGATCCCATCTCTGGAAAGATTCGCCCGCCGAaag < 1:416974/36‑1 (MQ=25)
gTGATACCATCTCTGGTAAGATTCGCCCGCCGAaag > 1:7287863/1‑36 (MQ=255)
gTGATACCATCTCGGGAAAGATTCGCCCGCCGAaag < 1:5255981/36‑1 (MQ=37)
tGATACCATCTCTGGTAAGATTCGCCCGCCGAaaga > 1:1967764/1‑36 (MQ=255)
tGATACCATCTCTGGTAAGATTCGCCCGCCGAaaga < 1:2806798/36‑1 (MQ=255)
aaTACCATCTTTGGAATAGTGCGCCCGCCGAaagaa < 1:1874324/35‑1 (MQ=9)
aTACCATCTCTGGTAAGATTCGCCCGCCGAaagaag > 1:7414583/1‑36 (MQ=255)
aTACCATCTCTGGTAAGATTCGCCCGCCGAaagaag > 1:6937112/1‑36 (MQ=255)
aTACCATCTCTGGTAAGATTCGCCCGCCGAaagaag > 1:2691188/1‑36 (MQ=255)
aTACCATCTCTGGTAAGATTCGCCCGCCGAaagaag > 1:5107/1‑36 (MQ=255)
tACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAgg > 1:3586587/1‑36 (MQ=255)
aCCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGt < 1:3787343/36‑1 (MQ=255)
ccATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTg < 1:6673424/36‑1 (MQ=255)
ccATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTg > 1:879896/1‑36 (MQ=255)
caaTCTCTGAAAAGATCCGCCCGCCGAAAGAAGGTg < 1:3052541/34‑1 (MQ=21)
cATCTCGGGAAAGATTCGCCCGCCGAAAGAAGGTGa < 1:652174/36‑1 (MQ=37)
aTCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGaa > 1:6115044/1‑36 (MQ=255)
tctcTGGTAAGATTCGCCCGCCGAAAGAAGGTGAAc > 1:187726/1‑36 (MQ=255)
tctcGGGTAAGATTCGCCCGCCGAAAGAAGGTGAAc < 1:1059548/36‑1 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGc > 1:1010143/1‑36 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGc > 1:5850560/1‑36 (MQ=255)
tctGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGc > 1:3581132/1‑36 (MQ=255)
tGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTa > 1:1628890/1‑36 (MQ=255)
tGGAAAGATTCGCCCGCCGAAAGAAGGTGAACGCTa < 1:1188685/36‑1 (MQ=255)
ggTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAt > 1:5231171/1‑36 (MQ=255)
ggTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAt > 1:6556235/1‑36 (MQ=255)
ggTAAGATTCGCCCGCCGAAAGAAGGGGAACGCTAt > 1:3819160/1‑36 (MQ=255)
gTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt > 1:6056726/1‑36 (MQ=255)
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GTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATT > REL606/3928479‑3928547
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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