Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,028,858 | 0 | C→A | 11.2% | 6.3 ‑9.9 0.0 | 67 | 758 | ugd | UDP‑glucose 6‑dehydrogenase |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/9): ref base (42/16): total (42/25) | ||||||||||
Fisher's exact test strand distribution p-value = 4.78e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATAACCACCATAACCAAACGACGGATTGTTGTAA > REL606/2028823‑2028893
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aGTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGAc < 1:6218477/36‑1 (MQ=255)
aGTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGAc > 1:3705534/1‑36 (MQ=255)
aGTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGAc < 1:3699754/36‑1 (MQ=255)
aGTTCGCAAGTAACTGCTTGGAATCTTTCGGCAGAc > 1:292743/1‑36 (MQ=37)
gTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACa < 1:5180820/36‑1 (MQ=255)
gTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACa < 1:4499938/36‑1 (MQ=255)
gTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACa < 1:6266671/36‑1 (MQ=255)
gTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACa < 1:3500014/36‑1 (MQ=255)
ttCGCCAGTAACTGCTTGGTATCTTTCGGCAGACaa > 1:7071076/1‑36 (MQ=255)
tCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAAt < 1:6784299/36‑1 (MQ=255)
tCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAAt > 1:2815905/1‑36 (MQ=255)
tCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAAt > 1:7621456/1‑36 (MQ=255)
tCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAAt < 1:7796147/36‑1 (MQ=255)
tCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAAt > 1:1472228/1‑36 (MQ=255)
cGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATa < 1:3827766/36‑1 (MQ=255)
cGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATa > 1:1320800/1‑36 (MQ=255)
cGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATa > 1:571168/1‑36 (MQ=255)
cGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATa < 1:1156510/36‑1 (MQ=255)
cGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATa > 1:6987881/1‑36 (MQ=255)
gCCAGTAACTGCTTGGTATCTTTCGGCAGACAATaa < 1:4563608/36‑1 (MQ=255)
gCCAGTAACTGCTTGGTATCTTTCGGCAGACAATaa < 1:7933606/36‑1 (MQ=255)
gCCAGTAACTGCTTGGTATCTTTCGGCAGACAATaa > 1:2100507/1‑36 (MQ=255)
ccAGTAACTGCTTGGTATCTTTCGGCAGACAATAac > 1:6822120/1‑36 (MQ=255)
ccAGTAACTGCTTGGTATCTTTCGGCAGACAATAac < 1:5314840/36‑1 (MQ=255)
cAGTAACTGCTTGGTATCTTTCGGCAGACAATAacc > 1:7626819/1‑36 (MQ=255)
cAGTAACTGCTTGGTATCTTTCGGCAGACAATAacc > 1:7153543/1‑36 (MQ=255)
cAGTAACTGCTTGGTATCTTTCGGCAGACAATAacc < 1:7514428/36‑1 (MQ=255)
aGTAACTGCTTGGTATCTTTCGGCAGACAATAacca > 1:2295782/1‑36 (MQ=255)
gTAACTGCTTGGTATCTTTCGGCAGACAATAaccac < 1:6559923/36‑1 (MQ=255)
aaCTGCTTGGTATCTTTCGGCAGACAATAAccacca > 1:1118770/1‑36 (MQ=255)
aaCTGCTTGGTATCTTTCGGCAGACAATAAccacca < 1:1715688/36‑1 (MQ=255)
aCTGCTTGGTATCTTTCGGCAGACAATAACCACCAt > 1:5874062/1‑36 (MQ=255)
aCTGCTTGGTATCTTTCGGCAGACAATAACCACCAt > 1:6526352/1‑36 (MQ=255)
aCTGCTTGGTATCTTTCGGCAGACAATAACCACCAt > 1:1362939/1‑36 (MQ=255)
aCTGCTTGGTATCTTTCGGCAGACAATAACCACCAt > 1:664583/1‑36 (MQ=255)
aCTGCTTGGTATCTTTCGGCAGACAATAACCACCAt > 1:1743454/1‑36 (MQ=255)
cTGCTTGGTATCTTTCGGCAGACAATAACCACCATa > 1:954579/1‑36 (MQ=255)
cTGCTTGGTATCTTTCGGCAGACAATAACCACCATa > 1:5679778/1‑36 (MQ=255)
cTGCTTGGTATCTTTCGGAAAAAAATAACCACCATa < 1:406105/36‑1 (MQ=21)
tGCTTGGTATCTTTCGGCAGACAATAACCACCATaa > 1:7607724/1‑36 (MQ=255)
tGCTTGGTATCTTTCGGCAGACAATAACCACCATaa > 1:2732520/1‑36 (MQ=255)
gCTTGGTATCTTTCGGCAGACAATAACCACCATAAc > 1:5315263/1‑36 (MQ=255)
gCTTGGTATCTTCCGGAAGAAAATAACCACCATAAc < 1:525173/36‑1 (MQ=25)
gCTGGGTATCTTTCGGCAGAAAATAACCACCATAAc < 1:2861269/36‑1 (MQ=37)
ttGGTATCTTTCGGCAGACAATAACCACCATAACCa > 1:119998/1‑36 (MQ=255)
ttGGTATCTTTCGGCAGACAATAACCACCATAACCa > 1:7068065/1‑36 (MQ=255)
tGGTATCTTTCGTAAAAAAATAACCACCATAACCaa < 1:3746170/36‑1 (MQ=16)
tGGTATCTTTCGGCAGACAATAACCACCATAACCaa > 1:3583636/1‑36 (MQ=255)
tGGTATCTTTCGGAAAACAATAACCACCATAACCaa < 1:7687958/36‑1 (MQ=37)
ggTATTTTTCGGAAAAAAAAAACCACCATAACCaaa < 1:4345158/36‑1 (MQ=16)
ggTATCTTTCGGCAGTCAATAACCACCATAACCaaa > 1:5477669/1‑36 (MQ=255)
ggTATCTTTCGGCAGACAATAACCACCATAACCaaa > 1:2395817/1‑36 (MQ=255)
ggTATCTTTCGGCAGACAATAACCACCATAACCaaa > 1:528279/1‑36 (MQ=255)
ggTATCTTTCGGCAGACAATAACCACCATAACCaaa < 1:481340/36‑1 (MQ=255)
gTATCTTTCGGCAGACAATAACCACCATAACCAAac > 1:3022725/1‑36 (MQ=255)
tATCTTTCGGCAGACAATAACCACCATAACCAAacg > 1:2190349/1‑36 (MQ=255)
aTCTTTCGGCAGACAATAACCACCATAACCAAacga > 1:2305411/1‑36 (MQ=255)
aTCTTTCGGCAGACAATAACCACCATAACCAAacga > 1:6190115/1‑36 (MQ=255)
tCTTACGGAAAAAAAAAACCACCATAACCAAacgac < 1:6133644/36‑1 (MQ=16)
ttCGGCAGACAATAACCACCATAACCAAACGACGGa > 1:6986992/1‑36 (MQ=255)
tCGGCAGACAATAACCACCATAACCAAACGACGGAt > 1:7381669/1‑36 (MQ=255)
tCGGAAGAAAATAACCACCATAACCAAACGACGGAt < 1:1271534/36‑1 (MQ=37)
cGGCAGACAATAACCACCATAACCAAACGACGGAtt > 1:6913723/1‑36 (MQ=255)
cGGCAGACAATAACCACCATAACCAAACGACGGAtt > 1:3529278/1‑36 (MQ=255)
ggCAGACAATAACCACCATAACCAAACGACGGAttg > 1:1311693/1‑36 (MQ=255)
gacAGAAAAAAACCACCATAACCAAACGACGGAttg < 1:4176898/34‑1 (MQ=37)
gCAGACAATAACCACCATAACCAAACGACGGAttgt > 1:2250527/1‑36 (MQ=255)
gCAGACAATAACCACCATAACCAAACGACGGAttgt > 1:3978904/1‑36 (MQ=255)
aaGAAAATAACCACCATAACCAAACGACGGAttgtt < 1:1823018/35‑1 (MQ=255)
aGACAATAAACACCATAACCAAACGACGGAttgttg > 1:2552970/1‑36 (MQ=255)
aCAATAACCACCATAACCAAACGACGGATTGTTGTa > 1:5708206/1‑36 (MQ=255)
cAATAACCACCATAACCAAACGACGGATTGTTGTaa > 1:7155790/1‑36 (MQ=255)
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AGTTCGCCAGTAACTGCTTGGTATCTTTCGGCAGACAATAACCACCATAACCAAACGACGGATTGTTGTAA > REL606/2028823‑2028893
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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