Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,732,014 | C→A | 34.6% | R91L (CGC→CTC) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,732,014 | 0 | C→A | 34.6% | 38.8 0.0 ‑0.3 | 53 | 272 | hypF | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
Reads supporting (aligned to +/- strand): new base (9/9): ref base (16/18): total (26/27) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.80e-01 |
AATTTGCGTATTCATGGTGCCGCCTGTGCTCTGGCGGATAGTGAACTCAGTGGGCAGTTGTGACCAGATA > REL606/2731980‑2732049
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aaTTTGCGTATTCATGGTGCCGCCTGTGCTCTGGCg > 1:3980559/1‑36 (MQ=255)
aTTTGCGTATTCATGGTGCCGCCTGTGCTCTGGCgg > 1:4237599/1‑36 (MQ=255)
aTTTGCGTATTCATGGTGCCGCCTGTGCTCTGGAgg < 1:2947962/36‑1 (MQ=255)
aTTTGCGTATACCTGGTGCCGCCTGTGCTCTGGCgg < 1:5885652/36‑1 (MQ=38)
tttGCGTATTCATGGTGCCGCCTGTGCTCTGGAGGa < 1:2104377/36‑1 (MQ=255)
tGCGTATTCATGGTGCCGCCTGTGCTCTGGCGGGTa > 1:5894268/1‑36 (MQ=255)
tGCGTATTCATGGTGCCGCCTGTGCTCTGGCGGATa < 1:2658030/36‑1 (MQ=255)
gCGTATTCATGGTGCCGCCTGTGCTCTGGCGGATAg > 1:1866489/1‑36 (MQ=255)
gTATTCATGGTGCCGCCTGTGCTCTGGAGGATAGTg > 1:3488759/1‑36 (MQ=255)
ttCATGGTGCCGCCTGTGCTCTGGAGGATAGTGAAc < 1:5096116/36‑1 (MQ=255)
ttCATGGTGCCGCCTGTGCTCTGGAGGATAGTGAAc < 1:3786518/36‑1 (MQ=255)
ttCATGCTGCCGCCTGTGCTCTTGCGGATAGTGAAc < 1:3797970/36‑1 (MQ=37)
tCATGGTGCCGCCTGTGCTCTGGCGGATAGTGAACt > 1:533321/1‑36 (MQ=255)
cATGGTGGCGCCTGTGCTCTGGCGGATAGTGAACTc < 1:1355717/36‑1 (MQ=255)
cATGGTGCCGCCTGTGCTCTGGCGGATAGTGAACTc < 1:1131084/36‑1 (MQ=255)
cATGGTGCCGCCTGTGCTCTGGCGGATAGTGAACTc < 1:1068600/36‑1 (MQ=255)
attgTGCCGCCTGTGCTCTGGATGATAGTGAACTCa < 1:2333864/33‑1 (MQ=25)
aTGGTGCCGCCTGTGCTCTGGCGGATAGTGAACTCa > 1:840449/1‑36 (MQ=255)
aTGGTGCCGCCTGTGCTCTGGAGGATAGTGAACTCa > 1:331364/1‑36 (MQ=255)
tGGTGCCGCCTGTGCTCTGGAGGATAGTGAACTCAg > 1:1661207/1‑36 (MQ=255)
ggcgccgccTGTGCTCTGGCGGATAGTGAACTCAGt > 1:4871029/4‑36 (MQ=255)
ggTGCCGCCTGTGCTCTGGAGGATAGTGAACTCAGt < 1:1814769/36‑1 (MQ=255)
ggTACCGCCTGTGCTCTGGAGGATAGTGAACTCAGt < 1:3448461/36‑1 (MQ=38)
gTGTCGCTTGTGCTCTGGCGGATAGTGAACTCAGTg < 1:5531149/36‑1 (MQ=38)
gccgccTGTGCTCTGGCGGATAGTGAACTCAGTggg > 1:3863485/1‑36 (MQ=255)
ccgccTGTGCTCTGGAGGATAGTGAACTCAGTGGGc > 1:2227422/1‑36 (MQ=255)
cgccTGTGCTCTGGCGGATAGTGAACTCAGTGGGCa < 1:3140052/36‑1 (MQ=255)
cgccTGTGCTCTGGCGGATAGTGAACTCAGTGGGCa < 1:3773138/36‑1 (MQ=255)
cgccTGTGCTCTGGAGGATAGTGAACTCAGTGGGCa > 1:3216363/1‑36 (MQ=255)
ccTGTGCTCTGGCGGATAGTGAACTCAGTGGGCAGt < 1:609668/36‑1 (MQ=255)
ccTGTGCTCTGGCGGATAGTGAACTCAGTGGGCAGt > 1:2421001/1‑36 (MQ=255)
ccTGTGCTCTGGCGGATAGTGAACTCAGTGGGCAGt < 1:1453193/36‑1 (MQ=255)
ccTGTGCTCTGGAGGATAGTGAACTCAGTGGGCAGt < 1:3120960/36‑1 (MQ=255)
ccTGTGCTCTGGAGGATAGTGAACTCAGTGGGCAGt > 1:4862675/1‑36 (MQ=255)
tgtgCTCTGGTGGATGGTGAACTCAGTGTGCTGTtg > 1:5717799/1‑36 (MQ=16)
tgtgCTCTGGCGGATAGTGAACTCAGTGGGCAGTtg < 1:5886001/36‑1 (MQ=255)
tgtgCTCTGGCGGATAGTGAACTCAGTGGGCAGTtg > 1:256906/1‑36 (MQ=255)
gtgCTCTGGCGGATAGTGAACTCAGTGGGCAGTtgt < 1:184606/36‑1 (MQ=255)
gtgCTCTGGCGGATAGTGAACTCAGTGGGCAGTtgt < 1:1891702/36‑1 (MQ=255)
tgCTCTGGCGGATAGTGAACTCAGTGGGCTGTtgtg > 1:5201182/1‑36 (MQ=255)
tgCTCTGGCGGATAGTGAACTCAGTGGGCAGTtgtg > 1:4028307/1‑36 (MQ=255)
gCTCTGGCGGATAGTGAACTCAGTGGGCAGTTGTGa > 1:14604/1‑36 (MQ=255)
gCTCTGGCGGATAGTGAACTCAGTGGGCAGTTGTGa < 1:3591689/36‑1 (MQ=255)
gCTCTGGAGGATAGTGAACTAAGTGGGCAGTTGTGa > 1:834341/1‑36 (MQ=255)
tctGGAGGATAGTGAACTCAGTGGGCAGTTGTGAcc > 1:4844731/1‑36 (MQ=255)
tatGGAGGATAGTGAACTCAGTGGGCAGTTGTGAcc > 1:647392/3‑36 (MQ=38)
ctGGAGGATAGTGAACTCAGTGGGCAGTTGTGACCa < 1:4151208/36‑1 (MQ=255)
tGGCGGATAGTGAACTCAGTGGGCAGTTGTGACCAg < 1:707126/36‑1 (MQ=255)
tGGCGGATAGTGAACTCAGTGGGCAGTTGTGACCAg > 1:1101046/1‑36 (MQ=255)
tGGCGGATAGTGAACTCAGTGGGCAGTTGTGACCAg > 1:1850886/1‑36 (MQ=255)
ggCGGATAGTGAACTCAGTGGGCAGTTGTGACCAGa < 1:3601633/36‑1 (MQ=255)
gCGGATAGTGAACTCAGTGGGCAGTTGTGACCAGAt < 1:571573/36‑1 (MQ=255)
gCGGATAGTGAACTCAGTGGGCAGTTGTGACCAGAt > 1:4104306/1‑36 (MQ=255)
cGGATAGTGAACTCAGTGGGCAGTTGTGACCGGATa < 1:4546855/36‑1 (MQ=255)
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AATTTGCGTATTCATGGTGCCGCCTGTGCTCTGGCGGATAGTGAACTCAGTGGGCAGTTGTGACCAGATA > REL606/2731980‑2732049
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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