Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 293,942 | 0 | G→T | 16.8% | 10.7 ‑10.6 ‑0.0 | 62 | intergenic (+212/‑315) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (11/0): ref base (16/35): total (27/35) | ||||||||||
Fisher's exact test strand distribution p-value = 2.57e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.93e-01 |
TTACTTGATACGTGATTATTGTCGGTGATTTTTTTGTACACCATCAGTGTATATCTCAATAACCCCTGAAT > REL606/293907‑293977
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ttACTTGATACGTGATTATTGTCGGTGATTTTTTTg < 1:5471157/36‑1 (MQ=255)
tACTTGATACGTGATTATTGTCGGTGATTTTTTTGt < 1:4670968/36‑1 (MQ=255)
tACTTGATACGTGATTATTGTCGGTGATTTTTTTGt < 1:2115440/36‑1 (MQ=255)
aCTTGATACGTGATTATTGTCGGTGATTTTTTTTTa > 1:1215164/1‑36 (MQ=255)
aCTTGATACGTGATTATTGTCGGTGATTTTTTTTTa > 1:3928944/1‑36 (MQ=255)
cTTGATACGTGATTATTGTCGGTGATTTTTTTTTac > 1:1301169/1‑36 (MQ=255)
ttGATACGTGATTATTGTCTGTGGTTTTTTTGTaca < 1:418959/36‑1 (MQ=37)
tGATACGTGATTATTGTCGGTGATTTTTTTTTacac > 1:4371147/1‑36 (MQ=255)
gATACGTGATTATTGTCGGTGGTTTTTTTTTTCAcc > 1:4155323/1‑36 (MQ=21)
gATACGTGATTATTGTCGGTGATTTTTTTTTacaca > 1:3153673/1‑35 (MQ=255)
tACGTGATTATTGTCGGTGATTTTTTTGTACACCAt < 1:5449344/36‑1 (MQ=255)
tACGTGATTATTGTCGGTGATTTTTTTGTACACCAt < 1:5901460/36‑1 (MQ=255)
aCGTGATTATTGTCGGTGATTTTTTTTTACACCATc > 1:2710469/1‑36 (MQ=255)
aCGTGATTATTGTCGGTGATTTTTTTGTACGCCATc < 1:742935/36‑1 (MQ=255)
aCGTGATTATTGTCGGTGATTTTTTTGTACACCATc < 1:606688/36‑1 (MQ=255)
cGTGATTATTGTCGGTGATTTTTTTGTACACCATCa < 1:3380989/36‑1 (MQ=255)
gTGATTATTGTCGGTGATTTTTTTTTTCACCATCAg > 1:899151/1‑36 (MQ=37)
gTGATTATTGTCGGTGATTTTTTTTTACACCATCAg > 1:4218753/1‑36 (MQ=255)
tGATTATTGTCGGTGATTTTTTTGTACACCATCAgt < 1:1268058/36‑1 (MQ=255)
tGATTATTGTCGGTGATTTTTTTGTACACCATCAgt < 1:3792041/36‑1 (MQ=255)
gATTATTGTCGGTGCTTTTTTTTTACNNNCTCCgtg > 1:1987626/1‑36 (MQ=12)
attattGTCGGTGATTTTTTTGTACACCATCAgtgt < 1:3724367/36‑1 (MQ=255)
attGTCGGTTATTTTTTTGTACTCCATCAGTGtata < 1:689310/36‑1 (MQ=37)
attGTCGGTGATTTTTTTGTACACCATCAGTGtata < 1:245961/36‑1 (MQ=255)
attGTCGGTGATTTTTTTGTACACCATCAGTGtata < 1:1529705/36‑1 (MQ=255)
ttGTCGGTGATTTTTTTGTACACCATCAGTGTatat < 1:5478128/36‑1 (MQ=255)
tGTCGGTGATTTTTTTTTACACCATCAGTGTATAtc > 1:3519962/1‑36 (MQ=255)
tGTCGGTGATTTTTTTGTACACCATCAGTGTATAtc > 1:5064231/1‑36 (MQ=255)
tGTCGGTGATTTTTTTGTACACCATCAGGGTATAtc > 1:3828694/1‑36 (MQ=255)
gTCGGTGATTTTTTTGTACACCATCAGTGTATAtct < 1:4279652/36‑1 (MQ=255)
gTCGGTGATTTTTTTGTACACCATCAGTGTATAtct < 1:3367697/36‑1 (MQ=255)
gTCGGTGATTTTTTTGTACACCATCAGTGTATAtct > 1:1873017/1‑36 (MQ=255)
gTCGGTGATTTTTTTGTACACCATCAGTGTATAtct < 1:2316658/36‑1 (MQ=255)
tCGGTGATTTTTTTGTACACCATCAGTGTATAtctc > 1:3130558/1‑36 (MQ=255)
tCGGTGATTTTTTTGTACACCATCAGTGTATAtctc < 1:3022744/36‑1 (MQ=255)
tCGGTGATTTTTTTGTACACCATCAGTGTATAtctc < 1:3669029/36‑1 (MQ=255)
tCGGTGATTTTTTTGTACACCATCAGTGTATAtctc < 1:5263087/36‑1 (MQ=255)
tCGGTGATTTTTTTGTACACCATCAGTGTATAtctc > 1:4254772/1‑36 (MQ=255)
ggTGATTTTTTTGTACACCATCAGTGTATATCTCaa < 1:2148031/36‑1 (MQ=255)
ggTGATTTTTTTGTACACCATCAGTGTATATCTCaa > 1:2555552/1‑36 (MQ=255)
ggTGATTTTTTTGTACACCATCAGTGTATATCTCaa < 1:5517641/36‑1 (MQ=255)
ggTGATTTTTTTGTACACCATCAGTGTATATCTCaa > 1:1436272/1‑36 (MQ=255)
ggTGATTTTTTTGTACACCATCAGTGTATATCTCaa > 1:666888/1‑36 (MQ=255)
ggTGATTTTTTTGTACACCATCAGGGTATATCTCaa > 1:405700/1‑36 (MQ=255)
gTGATTTTTTTGTACACCATCAGTGTATATCTCAAt < 1:2578318/36‑1 (MQ=255)
tGATTTTTTTGTACACCATCAGTGTATATCTCAATa < 1:246454/36‑1 (MQ=255)
tGATTTTTTTGTACACCATCAGTGTATATCTCAATa > 1:1518263/1‑36 (MQ=255)
gATTTTTTTGTACACCATCAGTTTATATCTCAATaa < 1:526646/36‑1 (MQ=255)
gATTTTTTTGTACACCATCAGTGTATATCTCAATaa > 1:3722879/1‑36 (MQ=255)
aTTTTTTTGTACACCATCAGTGTATATCTCAATAAc < 1:1681804/36‑1 (MQ=255)
tttttttGTACACCATCAGTGTATATCTCAATAAcc > 1:1235959/1‑36 (MQ=255)
tttttttGTACACCATCAGTGTATATCTCAATAAcc < 1:2196491/36‑1 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc < 1:4419766/36‑1 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc < 1:4396191/36‑1 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc > 1:1721195/1‑36 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc < 1:2887366/36‑1 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc < 1:1308261/36‑1 (MQ=255)
ttttttGTACACCATCAGTGTATATCTCAATAAccc < 1:2952195/36‑1 (MQ=255)
tttttGTACACCATCAGTGTATATCTCAATAAcccc > 1:2336995/1‑36 (MQ=255)
tttttGTACACCATCAGTGTATATCTCAATAAcccc > 1:4193250/1‑36 (MQ=255)
tttttGTACACCATCAGTGTATATCTCAATAAcccc < 1:2953294/36‑1 (MQ=255)
ttttGTACACCATCAGTGTATATCTCAATAACCCCt < 1:2662852/36‑1 (MQ=255)
tGTACACCATCAGTGTATATCTCAATAACCCCTGaa > 1:938740/1‑36 (MQ=255)
gTACACCATCAGTGTATATCTCAATAACCCCTGAAt > 1:1289257/1‑36 (MQ=255)
gTACACCATCAGCGTATATACCAATAACCCCTGAAt > 1:1189931/1‑36 (MQ=25)
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TTACTTGATACGTGATTATTGTCGGTGATTTTTTTGTACACCATCAGTGTATATCTCAATAACCCCTGAAT > REL606/293907‑293977
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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