Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,893,550 | +G | 89.3% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,893,550 | 1 | .→G | 89.3% | 6.4 0.0 ‑0.3 | 28 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): new base (12/13): ref base (2/1): total (14/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.49e-01 |
TATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..G.ACTGTACTGCACCCATTTTGTTGGACGATGAA > REL606/3893515‑3893583
|
tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCa < 1:5891403/36‑1 (MQ=255)
aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..g < 1:3586645/36‑1 (MQ=255)
aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..g > 1:1875698/1‑36 (MQ=255)
aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..g > 1:1159314/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggac < 1:5594422/36‑4 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggac > 1:5534411/1‑33 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggac > 1:1189449/1‑33 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggac > 1:3914195/1‑33 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCCA..ggac > 1:3362433/1‑33 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCCAG.G.ACTGt < 1:3320652/36‑1 (MQ=37)
gggTACTCAGGTCGAAATCTAACGCCAG.G.ACTGTAc > 1:4095428/1‑36 (MQ=37)
ggTACTCAGGTCGAAATCTAACGCCAG.G.ACTGTACt < 1:1503102/36‑1 (MQ=37)
aCTCAGGGCGAAATCTAACGCCAG.G.ACTGTACTGCa > 1:3093069/1‑36 (MQ=25)
cTCAGGTCGAACTCTAACGCCAG.G.ACTGTACTGCAc < 1:1265000/36‑1 (MQ=25)
tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc < 1:4576341/36‑1 (MQ=37)
tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc < 1:2311700/36‑1 (MQ=37)
tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc < 1:3504491/36‑1 (MQ=37)
aGGTCGAAATCTAACGCCAG.G.ACTGTACTGCACCCa < 1:3520246/36‑1 (MQ=37)
ggTCGAAGTCTGACGCCA..GTACTGTACTGCACCCAt < 1:1114119/36‑1 (MQ=16)
ggTCGAAATCTAACGCCAG.G.ACTGTACTGCACCCAt > 1:667394/1‑36 (MQ=37)
tCGAAATCTAACGCCAG.G.ACTGTACTGCACCCAttt < 1:5284910/36‑1 (MQ=25)
cGAAATCTAACGCCAGGG.ACTGTACTGCACCCAttt > 1:1365924/1‑36 (MQ=18)
cGAAATCTAACGCCAG.G.ACTGTACTGCACCCAtttt < 1:299801/36‑1 (MQ=25)
cGAAATCTAACGCCAG.G.ACTGTACTGCACCCAtttt > 1:645821/1‑36 (MQ=25)
gAAATCTAACGCCAG.G.ACTGTACTGCACCCATTttg > 1:2173644/1‑36 (MQ=21)
gAAATCTAACGCCAG.G.ACTGTACTGCACCCATTttg > 1:174083/1‑36 (MQ=21)
gAAATCTAACGCCA..GTACTGTACTGCACCCAtttcg > 1:715336/1‑34 (MQ=21)
aTCTAACGCCAG.G.ACTGTACTGCACCCATTttgttg > 1:1260686/1‑36 (MQ=18)
aTCTAACGCCAG.G.ACTGTACTGCACCCATTttgttg > 1:2770401/1‑36 (MQ=18)
aTCTAACGCCAG.G.ACTGTACTGCACCCATTtcgtgg > 1:452704/1‑34 (MQ=18)
tttAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg < 1:4016714/34‑1 (MQ=17)
tCTAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg > 1:585928/1‑36 (MQ=18)
tCTAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg < 1:2801576/36‑1 (MQ=18)
tAACGCCAG.G.ACTGTACTGCACCCATTTTGTTGGAc < 1:5379827/36‑1 (MQ=17)
tAACGCCAG.G.ACTGTACTGCACCCATTTTGTTGGAc < 1:550156/36‑1 (MQ=17)
aCGCCAG.G.ACTGTACTGCACCCATTTTGTTGGACGa > 1:1325916/1‑36 (MQ=14)
acA..G.ACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:5371539/2‑36 (MQ=255)
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TATCGAACTGGGTACTCAGGTCGAAATCTAACGCCA..G.ACTGTACTGCACCCATTTTGTTGGACGATGAA > REL606/3893515‑3893583
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|