Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,190,653 | 0 | A→G | 17.0% | 7.9 ‑18.6 0.0 | 68 | 328 | yhaO | predicted transporter |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (13/0): ref base (8/46): total (22/46) | ||||||||||
Fisher's exact test strand distribution p-value = 8.02e-09 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACG.AACATCCAAATCACCAGCATTACGAA > REL606/3190618‑3190686
|
cAGGTAGTAAGCGCTAGCGTTTGTGATGGCGGTGGa < 1:4846399/36‑1 (MQ=16)
cAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGa < 1:5462381/36‑1 (MQ=255)
aGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGaa < 1:361399/36‑1 (MQ=255)
ggTAGGAAGCACTATCGTTGGTGATGGCGGTGGAAt < 1:3442150/36‑1 (MQ=255)
ggTAGGAAGCACTATCGTTGGTGATGGCGGGGGGAt > 1:2628469/1‑36 (MQ=37)
gTAGGAAGCCCTATCGTTGGTGATGGCGGTGGAATa < 1:2155792/36‑1 (MQ=255)
gTAGGAAGCACTATCGTTGGGGATGGAGGTGGGAtt > 1:4867720/1‑35 (MQ=21)
tAGGAAGCACTATCGTTGGTGATGGCGGTGGGATat > 1:2806677/1‑35 (MQ=255)
tAGGAAGCACTATCGTTGGTGATGGAGGTGGGATAg > 1:4742681/1‑36 (MQ=25)
aGGAAGCACTATCGTTGGTGATGGCGGTGGGAAAGa > 1:5174985/1‑36 (MQ=37)
aGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGa < 1:351911/36‑1 (MQ=255)
ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGAc < 1:3795236/36‑1 (MQ=255)
ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGAc < 1:4699123/36‑1 (MQ=255)
ggAAGCACTATCGTTGGTGATGGCGGGGGGATATAc > 1:2176753/1‑36 (MQ=25)
ggAAGCACTATCGTTGGTGATGGCGGCGGGATATAc > 1:853211/1‑36 (MQ=25)
gAAGCACTATCGTTGGTGATGGCGGTGGAATAGACg < 1:1306161/36‑1 (MQ=255)
aaGCACTATCGTTGGTGATGGCGGTGGAATAGACG.a < 1:5142038/36‑1 (MQ=255)
aGCACTATCGTTGGTGATGGCGGTGGAGTAGCCgga > 1:3048375/1‑34 (MQ=25)
aGCACTATCGTTGGTGATGGCGGTGGAATAGACG.aa < 1:1959063/36‑1 (MQ=255)
aGCACTATCGTTGGTGATGGCGGTGGAATAGACG.aa < 1:2861250/36‑1 (MQ=255)
aGCACTATCGTTGGTGATGGCGGTGGAATAGACG.aa < 1:2727598/36‑1 (MQ=255)
gCACTATCGTTGGTGATGGCGGTGGGATAGACG.AAc > 1:5218070/1‑36 (MQ=255)
cACTATCGTTGATGCTGGCGGTGGAGTCGACG.CACa < 1:925770/36‑1 (MQ=12)
aCTATCGTTGGTGATGGCGGTGGAATAGACG.AACAt < 1:1848881/36‑1 (MQ=255)
aCTATCGTTGGTGATGGCGGTGGAATAGACG.AACAt < 1:5125591/36‑1 (MQ=255)
cTATCGTTGGTGATGGCGGTGGAATAGACG.AACATc < 1:2826460/36‑1 (MQ=255)
tATCGTTGGTGATGGCGGTGGAATAGACG.AACATcc < 1:1829696/36‑1 (MQ=255)
tATCGTTGGTGATGGCGGTGGAATAGACG.AACATcc < 1:4233087/36‑1 (MQ=255)
aTCGTTGGTGATGGCGGTGGGATTGAGG.GACATCCa > 1:5705312/1‑36 (MQ=16)
tCGTTTTTGATGGCGGTTGACTATACG.AACATCCaa < 1:4612134/36‑1 (MQ=16)
tCGTTGGTGATGGCGGTGGAATAGACG.AACATCCaa < 1:4736975/36‑1 (MQ=255)
tCGTTGGTGATGGCGGTGGAATAGACG.AACATCCaa < 1:1422840/36‑1 (MQ=255)
tCGTTGGTGATGGCGGTGGAATAGACG.AACATCCaa < 1:713727/36‑1 (MQ=255)
cGTTGGTGATGGCGGTGGAATAGACG.AACATCCaaa < 1:5936325/36‑1 (MQ=255)
cGTTGGTGATGGCGGTGGAATAGACG.AACATCCaaa < 1:5133978/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGGATATAAG.AACATCCaaaa > 1:3973772/1‑35 (MQ=21)
gTTGGTGATGGCGGTGGGAGTGACGAAAAATCCaaa > 1:2424280/1‑36 (MQ=9)
gTTGGTGATGGCGGTGGAATAGACG.AACATCCAAAt < 1:5049899/36‑1 (MQ=255)
ttGGTTATGGCGGTGGAATAGACG.AACATCCGAATc < 1:4584779/36‑1 (MQ=38)
ttGGTGATGGCGGTGGAATAGACG.AACATCCAAATc < 1:4165756/36‑1 (MQ=255)
ttGGTGATGGCGGTGGAATAGACG.AACATCCAAATc < 1:110193/36‑1 (MQ=255)
ttGGTGATGGCGGTGGAATAGACG.AACATCCAAATc > 1:5614181/1‑36 (MQ=255)
ttGGTGATGGCGGTGGAATAGAAG.AACATCCAAAtt > 1:1710296/1‑35 (MQ=255)
tGGTGATGGCGTTGGAATAGACG.AACATCCAAATCa < 1:2732626/36‑1 (MQ=255)
tGGTGATGGCGGTGGAATAGACG.AACATCCAAATCa < 1:1046117/36‑1 (MQ=255)
ggTGATGGCGGTGGTATATACG.AAAAACCAAATCat > 1:5644230/1‑35 (MQ=19)
ggTGATGGCGGTGGAATAGACG.AACATCCAAATCAc < 1:2821548/36‑1 (MQ=255)
gTGATGGCGGTGGAATAGAAG.AAAATCCAAAACAcc > 1:953590/1‑36 (MQ=25)
gATGGCGGTGGGATAGACG.AACAACCAAAACACCAg > 1:1334986/1‑36 (MQ=37)
aTGGCGGTGGGGTAGAAG.AAAAACCAAAAAACCacc > 1:5460589/1‑34 (MQ=0)
aTGGCGGTGGAATAGACG.AACCTCCAAATCACCAGc < 1:3054137/36‑1 (MQ=255)
tGGCGGTGGAATATACG.AACATCCAAATCACCAGCa < 1:2470345/36‑1 (MQ=255)
tGGCGGTGGAATAGACG.AACATCCAAATCACCAGCa < 1:3662127/36‑1 (MQ=255)
ggCGGTGGAATAGACG.AACATCCAAATCACCAGCAt < 1:514544/36‑1 (MQ=255)
ggCGGTGGAATAGACG.AACATCCAAATCACCAGCAt < 1:5559235/36‑1 (MQ=255)
gCGGTGGAATAGACG.AACATCCAAATCACCAGCAtt < 1:4418340/36‑1 (MQ=255)
gCGGTGGAATAGACG.AACATCCAAATCACCAGCAtt < 1:4289910/36‑1 (MQ=255)
gCGGTGGAATAGACG.AACATCCAAATCACCAGCAtt < 1:1598618/36‑1 (MQ=255)
cGGTGAAATAGACG.AACATCCAAATCACCAGCATTa < 1:4548978/36‑1 (MQ=255)
ggTGGAATAGACG.AACATCCAAATCACCAGCATTAc > 1:2181531/1‑36 (MQ=255)
ggTGGAATAGACG.AACATCCAAATCACCAGCATTAc < 1:2565335/36‑1 (MQ=255)
ggTGGAATAGACG.AACATCCAAATCACCAGCATTAc < 1:3224841/36‑1 (MQ=255)
ggTGGAATAGACG.AACATCCAAATCACCAGCATTAc < 1:3607431/36‑1 (MQ=255)
gTGGAATAGACG.AACATCCAAATCACCAGCATTACg < 1:587518/36‑1 (MQ=255)
gTGGAATAGACG.AACATCCAAATCACCAGCATTACg < 1:4272271/36‑1 (MQ=255)
tGGAATAGACG.AACATCCAAATCACCAGCATTACGa < 1:467384/36‑1 (MQ=255)
ggAATAGACG.AACATCCAAATCCCCAGCATTACGaa < 1:1778700/36‑1 (MQ=255)
ggAATAGACG.AACATCCAAATCACCAGCATTACGaa > 1:4749961/1‑36 (MQ=255)
ggAATAGACG.AACATCCAAATCACCAGCATTACGaa < 1:863515/36‑1 (MQ=255)
ggAATAGACG.AACATACAAATCACCAGCATTACGaa > 1:4403566/1‑36 (MQ=255)
ggAATAGACG.AAAATCCAAATCACCAGCATTACGaa > 1:170787/1‑36 (MQ=255)
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CAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACG.AACATCCAAATCACCAGCATTACGAA > REL606/3190618‑3190686
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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