Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 390,641 | C→T | 15.9% | F411F (TTC→TTT) | proY → | predicted cryptic proline transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 390,641 | 0 | C→T | 15.9% | 2.0 ‑2.5 ‑0.0 | 36 | 1233 | proY | predicted cryptic proline transporter |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (18/12): total (24/12) | ||||||||||
Fisher's exact test strand distribution p-value = 7.93e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 |
GGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCC > REL606/390606‑390676
|
ggTGGGGTAGCAACGACCATCGGCGGGCTGATTTTc < 1:2721394/36‑1 (MQ=255)
gTGGGGTAGCAACGACCATCGGCTGGCTGATTTTcc < 1:5759743/36‑1 (MQ=255)
gTGGGGTAGCAACGACCATCGGCGGGCTGATTTTcc > 1:7101167/1‑36 (MQ=255)
gTGGGGTAGCAACGACCATCGGCGGGCTGATTTTcc < 1:5595889/36‑1 (MQ=255)
tGGGGTAGCAACGACCATCGGCGGGGTGATTTTTCt > 1:4973893/1‑36 (MQ=37)
tGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCt < 1:1548633/36‑1 (MQ=255)
tGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCt < 1:6612375/36‑1 (MQ=255)
ggggTAGCAACGACCATCGGCGGGCTTATTTTTCTg > 1:1715262/1‑36 (MQ=37)
ggTAGCAACGACCATCGGCGGGCTGATTTTCCTTct > 1:299476/1‑36 (MQ=255)
gTAGCAACGACCATCGGCGGGCTGGTTTTCCTGctc > 1:6696948/1‑36 (MQ=255)
gTAGCAACGACCATCGGCGGGCTGATTTTCCTGctc < 1:4634170/36‑1 (MQ=255)
aGCAACGACCATCGGCGGGCTGATTTTCCTGCTCtt < 1:6125075/36‑1 (MQ=255)
aGCAACGACCATCGGCGGGCTGATTTTCCTGCCCtt > 1:1329857/1‑36 (MQ=255)
gCAACGACCATCGGCGGGGCGATTTTTCCGCTCttt > 1:5684846/1‑36 (MQ=16)
aCGTCCATCGGCGGGCTGATTTTCCTGCTCTttatt < 1:837283/36‑1 (MQ=255)
cGACCATCGGCGGTCCGTTTTTTCTCCTCCttttta > 1:4340126/1‑36 (MQ=2)
cGACCATCGGCGGGCTGATTTTCCTTCTCTttatta > 1:4492526/1‑36 (MQ=255)
cGACCATCGGCGGGCTGATTTTCCTGCTCTttatta < 1:6645816/36‑1 (MQ=255)
cGACCATCGGCGGGCTGATTTTCCTGCTCTttagat > 1:6121618/1‑33 (MQ=255)
aCCATCGGCGGGCCCAATTTCCTGCTCTTTATTCTc > 1:7221718/1‑36 (MQ=16)
cATCGGCGGGCTGATTTTTCTTCTCTTTTTTATctg > 1:673458/1‑34 (MQ=21)
cATCGGCGGGCTGATTTTTCTTCTCTTTATTATctt > 1:1820394/1‑34 (MQ=25)
aTCGGCGGGCTGATTTTCCTGCTCTTTATTATCggg < 1:1824809/36‑1 (MQ=255)
cggcggGCTGATTTTCCTGCTCTTTATTATCGGGtt < 1:493227/36‑1 (MQ=255)
ggcggGCTGATTTTCCTGCTCTTTATTATCGGGTTg > 1:4874173/1‑36 (MQ=255)
ggcggGCTGATTTTCCTGCTCTTTATTATCGGGTTg > 1:3497480/1‑36 (MQ=255)
gcggGCTGATTTTCCTGCTCTTTATTATCGGGTTGa > 1:7086485/1‑36 (MQ=255)
gcggGCTGATTTTCATGCTCTTTATTATCGGGTTGa > 1:1268237/1‑36 (MQ=255)
cggGCTGATTTTCCTGCTCTTTATTATCGGGTTGAt > 1:6511589/1‑36 (MQ=255)
cggGCTGATTTTCCTGCTCTTTATTATCGGGTTGAt > 1:5474920/1‑36 (MQ=255)
gggCTGATTTTCCTGCTCTTTATTATCGGGTTGAtt > 1:5522503/1‑36 (MQ=255)
gggCTGATTTTCCTGCTCTTTATTATCGGGTTGAtt < 1:6457370/36‑1 (MQ=255)
gggCTGATTTTCCTGCTCTTTATTATCGGCTTGAtt > 1:3144931/1‑36 (MQ=255)
tGATTTTCCTGCTCTTTATTATCGGGTTGATTGGtt > 1:6171143/1‑36 (MQ=255)
tGATTTTCCTGCTCTTTATTATCGGGTTGATTGGtt < 1:2994377/36‑1 (MQ=255)
ttCCTGCTCTTTATTATCGGGTTGATTGGTTATCAc > 1:5220577/1‑36 (MQ=255)
ttCCTGCTCTTTATTATCGGGTTGATTGGTTATCAc > 1:5051127/1‑36 (MQ=255)
ttCCTGCTCTTTATTATCGGGTTGATTGGTTATCAc < 1:1277946/36‑1 (MQ=255)
tCCTGCTCTTTATTATCGGGTTGATTGGTTATCAcc > 1:6336770/1‑36 (MQ=255)
tCCTGCTCTTTATTATCGGGTTGATTGGTTATCAcc < 1:1391342/36‑1 (MQ=255)
ccTGCTCTTTATTATCGGGTTGATTTGTTATCAccc > 1:7359506/1‑36 (MQ=255)
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GGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCC > REL606/390606‑390676
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|