Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,863,739 | C→A | 30.6% | D111Y (GAT→TAT) | bglB ← | cryptic phospho‑beta‑glucosidase B |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,863,739 | 0 | C→A | 30.6% | 2.2 ‑2.1 0.0 | 19 | 331 | bglB | cryptic phospho‑beta‑glucosidase B |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (5/8): total (5/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.28e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTC > REL606/3863704‑3863772
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tACCAGCGGCTTGATCCCCGCCTGCGCCATTtcatc < 1:3362568/36‑1 (MQ=255)
aCCAGCGGCTTGATCCCCGCCTGCGCCATTtcatca > 1:5150895/1‑36 (MQ=255)
cAGCGGCTTGATCCCCGCCTGCGCCATTTCATCaaa < 1:582576/36‑1 (MQ=255)
cAGCGGCTTGATCCCCGCCTGCGCCATTTCATCaaa < 1:4597501/36‑1 (MQ=255)
gCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACa < 1:73470/36‑1 (MQ=255)
ggCTTGATCCCCGCCTGCGCCATTTCATCAAACAGc < 1:1509154/36‑1 (MQ=255)
ggCTTGATCCCCGCCTGCGCCATCTCATCAAACAGc > 1:1881783/1‑36 (MQ=255)
gCTTGATCCCCGCCTGCGCCATTTCATCAAACAGcc < 1:5554058/36‑1 (MQ=255)
gCTTGATCCCCGCCTGCGCCATTTCATCAAACAGcc < 1:3859758/36‑1 (MQ=255)
ttGATCCCCGCCTGCGCCATTTCATCAAACAGCCGa < 1:3472094/36‑1 (MQ=255)
ttGATCCCCGCCTGCGCCATTTCATCAAACAGCCGa > 1:2945044/1‑36 (MQ=255)
gtcccccGCCCGCGCAATTTCATCAAACAGCCGATc < 1:5819036/33‑1 (MQ=37)
gATCCCCGCCTGCGCCATTTCATCAAACAGCCGATc > 1:1511002/1‑36 (MQ=255)
cGCCTGCGCCATTTCATAAAACAGCCGATCGTaaaa < 1:5930849/36‑1 (MQ=255)
gCCTGCGCCATTTCATCAAACAGCCGATCGTAAAAc > 1:3870457/1‑36 (MQ=255)
tGCGCAATTACATAAAACAGCCGATCGTAAAACGCt < 1:4707563/36‑1 (MQ=25)
caccATTACAAAAAACAGCCGATCGTAAAACGCTaa < 1:1774418/34‑1 (MQ=21)
cgaTTTAATAAAACACGGGATCGTAAAACGCTAAcc < 1:4525412/34‑1 (MQ=12)
ccATTACATAAAACAGCCGATCGTAAAACGCTAAcc < 1:188897/36‑1 (MQ=37)
tttCATCAAACAGACGATCGTAAAACGCTAACCCCg > 1:3073113/1‑36 (MQ=255)
tttAATAAAACAGCCGATCGTAAAACGCTAACCCCg < 1:5896600/36‑1 (MQ=37)
tcatcaAACAGCCGATCGTAAAACGCTAACCCCGCt > 1:4078856/1‑36 (MQ=255)
aagcaACCACCCGATCGTAAAACGCTACCCCCGCtt < 1:5672824/33‑1 (MQ=19)
atcaAACAGCCGATCGTAAAACGCTAACCCCGCTTc > 1:1315929/1‑36 (MQ=255)
accaACCAGCCGATCGTAAAACGCTAACCCCGCTTc < 1:5565122/34‑1 (MQ=37)
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TACCAGCGGCTTGATCCCCGCCTGCGCCATTTCATCAAACAGCCGATCGTAAAACGCTAACCCCGCTTC > REL606/3863704‑3863772
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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