New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 161952928 (0.570)6 (0.120) 4/60 NT 20.7% intergenic (‑138/+79) rem/hokD predicted protein/small toxic polypeptide
?REL606 1946064 = 18 (0.310)coding (144/390 nt) cheY chemotaxis regulator transmitting signal to flagellar motor component

ATGTTCCAGTCGGAGATAACAAATCCATAACCGCCTGCCTGCAACTTATTGAGAGCGTCGACGCCATCTTC  >  REL606/1946029‑1946099
                                   |                                   
aTGTTCCAGTCGGAGATAACAAATCCATAACCgcct                                     >  1:2352199/1‑36 (MQ=255)
   ttCCAGTCGGAGATAACAAATCCATAACCgcctgcc                                  >  1:255467/1‑36 (MQ=255)
     ccAGTCGGAGATAACAAATCCATAACCGcctgcctg                                >  1:670126/1‑36 (MQ=255)
        gTCGGAGATAACAAATCCATAACCGCCTGCCTGCaa                             >  1:4702082/1‑36 (MQ=255)
         tCGGAGATAACAAATCCATAACCGCCTGCCTGCAAc                            >  1:2027240/1‑36 (MQ=255)
               aTAACAAATCCATAACCGCCTGCCTGCAACTTATTg                      >  1:5409395/1‑36 (MQ=255)
               aTAACAAATCCATAACCGCCTGCCTGCAACTTATTg                      >  1:19856/1‑36 (MQ=255)
                 aaaaaaCCCAAAACCGCCTGCCTGCAACTTATTgag                    <  1:1454402/33‑1 (MQ=21)
                 aaCAAATCCATAACCGCCTGCCTGCAACTTATTgag                    >  1:2346841/1‑36 (MQ=255)
                    aaacaaaaacccgccTGCCTGCAACTTATTGAGAGc                 <  1:5596001‑M2/21‑1 (MQ=255)
                    aaaTCCATAACCGCCTGCCTGCAACTTATTGAGAGc                 >  1:6127729/1‑36 (MQ=255)
                    aaaTCCATAACCGCCTGCCTGCAACTTATTGAGAGc                 >  1:6129756/1‑36 (MQ=255)
                    aaaTCAAAAACCGCCTGCCTGCAACTTATTGAGAGc                 <  1:2597637/36‑1 (MQ=37)
                     aacaaaaacccgccTGCCTGCAACTTATTGAGAGCg                <  1:5703673‑M2/22‑1 (MQ=255)
                     aaTCCATAACCGCCTGCCTGCAACTTATTGAGAGCg                >  1:7374437/1‑36 (MQ=255)
                       tCCATAACCGCCTGCCTGCAACTTATTGAGAGCGTc              >  1:7354846/1‑36 (MQ=255)
                         cATAACCGCCTGCCTGCAACTTATTGAGAGCGTCgc            >  1:2968933/1‑35 (MQ=255)
                         aaaaaccgccTGCCTGCAACTTATTGAGAGCGTCGa            <  1:5952449‑M2/26‑1 (MQ=255)
                          aTAACCGCCTGCCTGCAACTTATTGAGAGCGTCGAc           >  1:4198697/1‑36 (MQ=255)
                           tAACCGCCTGCCTGCAACTTATTGAGAGCGTCGACg          >  1:398344/1‑36 (MQ=255)
                           aacccgccTGCCTGCAACTTATTGAGAGCGTCGACg          <  1:2188979‑M2/28‑1 (MQ=255)
                           aaaCCGCCTGCCTGCAACTTATTGAGAGCGTCGACg          <  1:536719/35‑1 (MQ=255)
                           aaaCCGCCTGCCTGCAACTTATTGAGAGCGTCGACg          <  1:6901784/35‑1 (MQ=255)
                            acccgccTGCCTGCAACTTATTGAGAGCGTCGACGc         <  1:5792264‑M2/29‑1 (MQ=255)
                            acccgccTGCCTGCAACTTATTGAGAGCGTCGACGc         <  1:4967839‑M2/29‑1 (MQ=255)
                            aaCCGCCTGCCTGCAACTTATTGAGAGCGTCGACGc         >  1:6454853/1‑36 (MQ=255)
                              ccgccTGCCTGCAACTTATTGAGAGCGTCGACGCCa       >  1:6119602‑M2/6‑36 (MQ=255)
                              ccgccTGCCTGCAACTTATTGAGAGCGTCGACGCCa       >  1:1900601‑M2/6‑36 (MQ=255)
                               cgccTGCCTGCAACTTATTGAGAGCGTCGACGCCAt      <  1:166541‑M2/32‑1 (MQ=255)
                                gccTGCCTGCAACTTATTGAGAGCGTCGACGCCATc     >  1:494512‑M2/4‑36 (MQ=255)
                                gccTGCCTGCAACTTATTGAGAGCGTCGACGCCATc     >  1:98899‑M2/4‑36 (MQ=255)
                                   tgcctgcAACTTATGGAGAGCGTCGACGCCATCTTc  <  1:4231146/36‑1 (MQ=255)
                                   |                                   
ATGTTCCAGTCGGAGATAACAAATCCATAACCGCCTGCCTGCAACTTATTGAGAGCGTCGACGCCATCTTC  >  REL606/1946029‑1946099

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG