Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546958–547700 555923–555877 8178–8966 17 [14] [0] 105 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)60 (1.120) 39/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 105 total aligned reads displayed.

GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959
                                   |                                   
atcatacactaaatcagtaagtttgcagcatcaccc                                     >  1:4348209‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:4326906‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:4678366‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3506769‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3339244‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:4936450‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:309262‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:5007397‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:5736758‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:5826734‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:5989267‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:2465198‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:2329219‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:2141527‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:620040‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:1829606‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:1198988‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:7787638‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:6650352‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:6784865‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:165733‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:6795313‑M1/36‑36 (MQ=255)
atcatacactaaatcagcaagttggcagcatcaccc                                     <  1:1447895‑M1/1‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:4199055‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:3471534‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:5123027‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:6097007‑M1/35‑36 (MQ=255)
 tcatacactaaatcaggaagttggcagcatcaccCa                                    <  1:7213474‑M1/2‑1 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   >  1:5218823‑M1/34‑36 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   <  1:2287903‑M1/3‑1 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   >  1:7231316‑M1/34‑36 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   <  1:6187908‑M1/3‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcacccacg                                  <  1:1507905‑M1/4‑3 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:2705458‑M1/4‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  >  1:5748810‑M1/33‑36 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:5748071‑M1/4‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:7567482‑M1/4‑1 (MQ=255)
    tacactaaatcagtaagttggcagcatcaccCAAAc                                 >  1:1071359‑M1/32‑36 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               <  1:1974560‑M1/7‑1 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               >  1:4766599‑M1/30‑36 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               >  1:1301525‑M1/30‑36 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               >  1:2566308‑M1/30‑36 (MQ=255)
       actaaatcagtaagttggcagcatcaccCAAAcgcg                              >  1:1801292‑M1/29‑36 (MQ=255)
        ctaaatcagtaagttggcagcatcaccCAAACgcgc                             <  1:6115669‑M1/9‑1 (MQ=255)
        ctaaatcagtaagttggcagcatcaccCAAACgcgc                             <  1:3393072‑M1/9‑1 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            <  1:3955454‑M1/10‑1 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            <  1:4010806‑M1/10‑1 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            >  1:4044959‑M1/27‑36 (MQ=255)
          aaatcagtaagttggcagcatcaccCAAACGCGCAt                           <  1:4400150‑M1/11‑1 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          <  1:5472432‑M1/12‑1 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          >  1:2077964‑M1/25‑36 (MQ=255)
            atcagtaagttggcagcatcaccCAAACGCGCATCa                         >  1:1321356‑M1/24‑36 (MQ=255)
            atcagtaagttggcagcatcaccCAAACGCGCATCa                         <  1:74091‑M1/13‑1 (MQ=255)
            atcagtaagttggcagcatcaccCAAACGCGCATCa                         <  1:7040273‑M1/13‑1 (MQ=255)
              cagtaagttggcagcatcaccCAAACGCGCATCAgg                       >  1:3892727‑M1/22‑36 (MQ=255)
              cagtaagttggcagcatcaccCAAACGCGCATCAgg                       <  1:3159885‑M1/15‑1 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      >  1:4655251‑M1/21‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      <  1:4906011‑M1/16‑1 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      <  1:2467166‑M1/16‑1 (MQ=255)
                gtaagttggcagcatcaccGAAACGCGCATCAGGTg                     >  1:2759949‑M1/20‑36 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     <  1:4690790‑M1/17‑1 (MQ=255)
                  aagttggcagcatcaccCAAACGCGCATCAGGTGCa                   >  1:6746416‑M1/18‑36 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  <  1:6783772‑M1/20‑1 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  <  1:1520159‑M1/20‑1 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  <  1:1380728‑M1/20‑1 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  >  1:6426746‑M1/17‑36 (MQ=255)
                    gttggcagcatcaccCAAACGCGCATCAGGTGCAac                 >  1:1690125‑M1/16‑36 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGCAaca                <  1:410424‑M1/22‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               <  1:2907091‑M1/23‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               <  1:1947148‑M1/23‑1 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAccata              <  1:5175186‑M1/24‑1 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:1690029‑M1/24‑1 (MQ=255)
                        gcagcatcaccCAAACGCGCATCAGGTGCAacatac             >  1:5500129‑M1/12‑36 (MQ=255)
                        gcagcatcaccCAAACGCGCATCAGGTGCAacatac             >  1:6732598‑M1/12‑36 (MQ=255)
                        gcagcatcaccCAAACGCGCATCAGGTGCAacatac             >  1:1372197‑M1/12‑36 (MQ=255)
                         cagcatcaccCAACCGCGCATCAGGTGCAacataca            <  1:5905090‑M1/26‑1 (MQ=255)
                         cagcatcaccCAAACGCGCATCAGGTGCAacataca            >  1:929313‑M1/11‑36 (MQ=255)
                          agcatcaccCAAACGCGCATCAGGTGCAacatacat           <  1:2932644‑M1/27‑1 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          <  1:5995560‑M1/28‑1 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          >  1:2940324‑M1/9‑36 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          <  1:4983379‑M1/28‑1 (MQ=255)
                            catcaccCAAACGCGCATCAGGTGCAACATACATta         >  1:2280401‑M1/8‑36 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       <  1:7753631‑M1/31‑1 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       >  1:4750557‑M1/6‑36 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       <  1:6749529‑M1/31‑1 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:2474774‑M1/5‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      <  1:2763463‑M1/32‑1 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:5523639‑M1/5‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      <  1:5388516‑M1/32‑1 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     <  1:4359470‑M1/33‑1 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:3052510‑M1/4‑36 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:6333627‑M1/4‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   >  1:7494102‑M1/2‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   >  1:7595119‑M1/2‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:4938180‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:3679680‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:1915230‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:1211595‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:906027‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:6153239‑M1/1‑36 (MQ=255)
                                   |                                   
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG