Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 330,478 | C→G | 26.3% | A257P (GCC→CCC) | cynR ← | DNA‑binding transcriptional dual regulator |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 330,478 | 0 | C→G | 26.3% | 4.5 ‑4.5 0.0 | 22 | 769 | cynR | DNA‑binding transcriptional dual regulator |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (3/13): total (8/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.09e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGG > REL606/330447‑330513
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aaaaCCGCCGTTCTCTCCAGTAGTGGCGGGGGAaga > 1:1327204/1‑36 (MQ=255)
aacccgccgTTCTCTCCAGTAGTGGCGGGGCAagag < 1:755274/33‑1 (MQ=255)
caCCGCCGTTCGCTCCAGTAGTGGCGGGGCAAgaga < 1:730606/35‑1 (MQ=255)
aaCCGCCGTTCTCTCCAGTAGTGGCGGGGGCAgaga > 1:5885622/1‑36 (MQ=37)
ccgccgTTCTCTCCAGTAGTGGCGGGGGGAGAGgaa > 1:7116985/1‑36 (MQ=25)
cgTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGc < 1:1217390/36‑1 (MQ=255)
tctctcCAGTAGTGGCGGGGCAAGAGAAATAGCttt < 1:6848098/36‑1 (MQ=255)
tctctcCAGTAGTGGCGGGGCAAGAGAAATAGCttt < 1:496305/36‑1 (MQ=255)
ctctcCAGTAGTGGCGGGGCAAGAGAAATAGCTTTa < 1:525115/36‑1 (MQ=255)
tctcCAGTAGTGGCGGGGCAAGAGAAATAGCTTTaa < 1:1202582/36‑1 (MQ=255)
tcCAGTAGTGGCGGGGGGAGAGAAAAAACTTTaatt > 1:5936005/1‑34 (MQ=16)
caagtggtGGCGGGGGAAGAGAAATAGCTTTAAGcc < 1:5459543/34‑1 (MQ=37)
agtagtGGCGGGGGAAGAGAAATAGATTTTAGCCCg > 1:282881/1‑36 (MQ=37)
tGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtg < 1:3102018/36‑1 (MQ=255)
ggCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgt > 1:7172838/1‑36 (MQ=255)
cGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgttg > 1:5296253/1‑36 (MQ=255)
ggggCAAGAGAAATAGCTTTAAGCCCGTCAtgttgt > 1:896117/1‑36 (MQ=255)
ggggCAAGAGAAATAGCTTTAAGCCCGTCAtgttgt < 1:5896781/36‑1 (MQ=255)
ggggCAAGAGAAATAGCTTTAAGCCCGTCAtgttgt < 1:1150146/36‑1 (MQ=255)
gggCAAGAGAAATAGCTTTAAGCCCGTCATGTtgtg < 1:1026322/36‑1 (MQ=255)
ggCAAGAGAAATAGCTTTAAGCCCGTCATGTtgtgt < 1:2703953/36‑1 (MQ=255)
ggCAAGAGAAATAGCTTTAAGCCCGTCATGTtgtgt < 1:834365/36‑1 (MQ=255)
cAAGAGAAATAGCTTTAAGCCCCTCATGTTGTGTgg < 1:2189504/36‑1 (MQ=255)
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AAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGG > REL606/330447‑330513
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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