New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 588495 =NA (NA)40 (0.940) 30/66 NT 100% noncoding (1/1977 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

CAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC  >  REL606/1270628‑1270695
                                |                                   
atttcatcgtccaacaaaatgggggcagtacaCCgg                                  >  1:4580688‑M2/33‑36 (MQ=255)
 tttcatcgtccaacaaaatgggtgcagtacaCCGGa                                 <  1:4613429‑M2/5‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaCCGGAt                                <  1:5070007‑M2/6‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaCCGGAt                                <  1:5594563‑M2/6‑1 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaCCGGATAAt                             >  1:1515675‑M2/28‑36 (MQ=255)
     atcgtccaacaaaatgggtgcagtacaCCGGATAAt                             <  1:2170195‑M2/9‑1 (MQ=255)
       cgtccaacaaaatgggtgcagtacaCCGGATAATTc                           >  1:5873072‑M2/26‑36 (MQ=255)
        gtccaacannatgggtgcagtacaCCGGATAATTcc                          <  1:433213‑M2/12‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaCCGGATAATTcc                          <  1:5536741‑M2/12‑1 (MQ=255)
        gtccaacaaaatgggggcagtacaCCGGATAATTcc                          >  1:5623394‑M2/25‑36 (MQ=255)
         tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         >  1:4315735‑M2/24‑36 (MQ=255)
         tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         >  1:5605697‑M2/24‑36 (MQ=255)
         tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         <  1:3888645‑M2/13‑1 (MQ=255)
          ccaacaaaatgggtgcagtacaCCGGATAATTCCgg                        >  1:4497642‑M2/23‑36 (MQ=255)
          ccaacaaaatgggtgcagtacaCCGGATAATTCCgg                        <  1:826857‑M2/14‑1 (MQ=255)
           caacaaaatgggtgcagtacaCCGGATAATTCCGGc                       <  1:128683‑M2/15‑1 (MQ=255)
             acaaaatgggtgcagtacaCCGGATAATTCCGGCtt                     <  1:5178675‑M2/17‑1 (MQ=255)
             acaaaatgggtgcagtacaCCGGATAATTCCGGCtt                     >  1:4768942‑M2/20‑36 (MQ=255)
             acaaaatgggtgcagtacaCCGGATAATTCCGGCtt                     <  1:4584963‑M2/17‑1 (MQ=255)
             acaaaatgggtgcagtacaCCGGATAATTCCGGCtt                     <  1:4230018‑M2/17‑1 (MQ=255)
             acaaaatgggtgcagtacaCCGGATAATTCCGGCtt                     >  1:5751756‑M2/20‑36 (MQ=255)
              caaaatgggtgcagtacaCCGGATAATTCCGGCTTg                    >  1:2356863‑M2/19‑36 (MQ=255)
              caaaatgggtgcagtacaCCGGATAATTCCGGCTTg                    >  1:5585103‑M2/19‑36 (MQ=255)
              caaaatgggtgcagtacaCCGGATAATTCCGGCTTg                    <  1:3536269‑M2/18‑1 (MQ=255)
                aaatgggttcagtacaCCGGATAATTCCGGCTTGgt                  <  1:1198653‑M2/20‑1 (MQ=255)
                aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  >  1:1446677‑M2/17‑36 (MQ=255)
                 aatgggtgcagtacaCCGGATAATTCCGGCTTGgtg                 <  1:3333517‑M2/21‑1 (MQ=255)
                  atgggtgcagtacaCCGGATAATTCCGGCTTGgtgt                >  1:5231706‑M2/15‑36 (MQ=255)
                   tgggtgcagtacaCCGGATAATTCCGGCTTGGtgtg               <  1:525096‑M2/23‑1 (MQ=255)
                   tgggtgcagtacaCCGGATAATTCCGGCTTGGtgtg               >  1:3775868‑M2/14‑36 (MQ=255)
                    gggtgcagtacaCCGGATAATTCCGGCTTGGTGTgg              >  1:1496496‑M2/13‑36 (MQ=255)
                     ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa             <  1:5405459‑M2/25‑1 (MQ=255)
                     ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa             <  1:2093463‑M2/25‑1 (MQ=255)
                     ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa             <  1:1523881‑M2/25‑1 (MQ=255)
                     ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa             >  1:1189543‑M2/12‑36 (MQ=255)
                       tgcagtaccCCGGATAATTCCGGCTTGGTGTGGAta           <  1:869381‑M2/27‑1 (MQ=255)
                          agtacaCCGGATAATTCCGGCTTGGTGTGGAtacta        >  1:4358576‑M2/7‑36 (MQ=255)
                           gtacaCCGGATAATTCCGGCTTGGTGTGGAtactac       <  1:4341235‑M2/31‑1 (MQ=255)
                           gtacaCCGGATAATTCCGGCTTGGTGTGGAtactac       <  1:2750286‑M2/31‑1 (MQ=255)
                             acaCCGGATAATTCCGGCTTGGTGTGGATACTACtt     >  1:4756720‑M2/4‑36 (MQ=255)
                               aCCGGATAATTCCGGCTTGGTGTGGATACTAGTtct   >  1:246645‑M2/2‑36 (MQ=255)
                               aCCGGATAATTCCGGCTTGGTGTGGATACTACTtct   <  1:5538623‑M2/35‑1 (MQ=255)
                               aCCGGATAATTCCGGCTTGGTGTGGATACTACTtct   >  1:5813235‑M2/2‑36 (MQ=255)
                               aCCGGATAATTCCGGCTTGGTGTGGATAATACTtct   >  1:3923496‑M2/2‑36 (MQ=255)
                                ccGGATAATTCCGGCTTGGTGTGGATATTACTtcta  >  1:1489121/1‑35 (MQ=255)
                                ccGGATAATTCCGGCTTGGTGTGGATACTACTtctc  <  1:4814265/36‑1 (MQ=38)
                                |                                   
CAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC  >  REL606/1270628‑1270695

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG