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breseq version 0.24 revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,581,966 | 0 | C→A | 15.1% | 7.3 ‑18.5 ‑0.0 | 98 | 1075 | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
* | REL606 | 3,605,172 | 0 | A→T | 11.5% | 7.1 ‑10.1 0.0 | 82 | 895 | yhjE | predicted transporter |
* | REL606 | 4,311,027 | 1 | .→A | 6.4% | 4.4 ‑3.4 0.0 | 47 | coding (960/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
* | REL606 | 3,893,550 | 1 | .→G | 2.9% | 4.0 0.0 ‑0.5 | 70 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
* | REL606 | 3,351,182 | 0 | A→C | 100.0% | 3.3 | 4 | intergenic (+96/+133) | yhdZ/rrfF | predicted amino‑acid transporter subunit/5S ribosomal RNA |
* | REL606 | 3,190,653 | 0 | A→G | 7.8% | 1.4 ‑9.7 0.0 | 76 | 328 | yhaO | predicted transporter |
* | REL606 | 3,485,893 | 0 | G→T | 10.7% | 1.4 ‑10.9 0.0 | 77 | 787 | rtcB | hypothetical protein |
* | REL606 | 3,269,645 | 0 | T→A | 6.7% | 1.1 ‑4.4 ‑0.0 | 87 | 702 | ispB | octaprenyl diphosphate synthase |
* | REL606 | 4,383,460 | 0 | G→T | 10.0% | 1.1 ‑7.9 0.0 | 79 | 619 | purA | adenylosuccinate synthetase |
* | REL606 | 1,627,384 | 0 | C→A | 8.4% | 1.0 ‑10.5 0.0 | 74 | 1591 | ydfE | predicted protein |
* | REL606 | 1,122,700 | 0 | T→C | 8.3% | 0.9 ‑5.8 0.0 | 90 | 811 | mdoC | glucans biosynthesis protein |
* | REL606 | 4,201,949 | 0 | G→A | 4.6% | 0.9 ‑0.5 ‑0.1 | 65 | 611 | iclR | DNA‑binding transcriptional repressor |
* | REL606 | 1,485,453 | 0 | A→G | 7.9% | 0.8 ‑6.0 0.0 | 74 | 582 | ydcV | predicted spermidine/putrescine transporter subunit |
* | REL606 | 3,280,884 | 0 | C→A | 8.5% | 0.8 ‑2.7 0.0 | 77 | 933 | rpoN | DNA‑directed RNA polymerase subunit N |
* | REL606 | 4,607,997 | 0 | T→C | 6.0% | 0.8 ‑2.2 ‑0.0 | 64 | 535 | deoA | thymidine phosphorylase |
* | REL606 | 3,806,810 | 0 | A→G | 7.4% | 0.5 ‑7.5 0.0 | 87 | 290 | uhpT | sugar phosphate antiporter |
* | REL606 | 4,174,746 | 0 | T→C | 3.6% | 0.4 ‑2.6 ‑0.7 | 84 | 965 | thiC | thiamine biosynthesis protein ThiC |
* | REL606 | 2,820,005 | 0 | G→T | 8.8% | 0.3 ‑10.1 0.0 | 71 | 112 | xni | exonuclease IX |
* | REL606 | 4,159,085 | 0 | C→A | 9.6% | 0.3 ‑11.5 0.0 | 68 | 596 | rplA | 50S ribosomal protein L1 |
* | REL606 | 3,254,492 | 0 | G→A | 6.6% | 0.2 ‑5.1 0.0 | 86 | 622 | argG | argininosuccinate synthase |
* | REL606 | 3,545,811 | 0 | A→T | 6.7% | 0.2 ‑8.4 0.0 | 66 | 1457 | nikA | nickel transporter subunit |
* | REL606 | 573,202 | 0 | T→G | 100.0% | 0.1 | 4 | 287 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 2,774,997 | 0 | G→T | 100.0% | 0.1 | 5 | 316 | insK‑3 | IS150 putative transposase |
* | REL606 | 3,398,611 | 0 | G→T | 100.0% | 0.1 | 4 | 624 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,716,099 | 0 | A→T | 10.4% | 0.1 ‑10.8 0.0 | 90 | 3109 | ECB_03460 | putative adhesin |
* | REL606 | 572,440 | 0 | G→T | 100.0% | 0.0 | 3 | 1049 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 429,548 | 0 | C→A | 100.0% | ‑0.1 | 1 | intergenic (+143/+127) | clpX/insL‑2 | ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186 |
* | REL606 | 429,549 | 0 | C→A | 100.0% | ‑0.1 | 1 | intergenic (+144/+126) | clpX/insL‑2 | ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,109 | 0 | T→C | 100.0% | ‑0.1 | 1 | 679 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,157 | 0 | T→G | 100.0% | ‑0.1 | 1 | 631 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,167 | 0 | C→A | 100.0% | ‑0.1 | 1 | 621 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,286 | 0 | T→C | 100.0% | ‑0.1 | 1 | 502 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,297 | 0 | T→C | 100.0% | ‑0.1 | 1 | 491 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,353 | 0 | A→T | 100.0% | ‑0.1 | 1 | 435 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,523 | 0 | C→T | 100.0% | ‑0.1 | 1 | 265 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 553,759 | 0 | C→A | 100.0% | ‑0.1 | 1 | 1919 | ECB_00512 | putative tail component of prophage |
* | REL606 | 554,377 | 0 | T→C | 100.0% | ‑0.1 | 2 | 2537 | ECB_00512 | putative tail component of prophage |
* | REL606 | 557,161 | 0 | T→G | 100.0% | ‑0.1 | 1 | 104 | ECB_00514 | conserved hypothetical protein |
* | REL606 | 557,166 | 0 | G→C | 100.0% | ‑0.1 | 1 | 109 | ECB_00514 | conserved hypothetical protein |
* | REL606 | 569,107 | 0 | G→T | 100.0% | ‑0.1 | 2 | 830 | yhhI | predicted transposase |
* | REL606 | 572,376 | 0 | G→C | 100.0% | ‑0.1 | 1 | 1113 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 572,424 | 0 | T→G | 100.0% | ‑0.1 | 5 | 1065 | ECB_00530 | conserved hypothetical protein |