New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 78925744 (0.960)6 (0.130) 4/56 NT 16.7% intergenic (‑235/+241) ECB_00726/ECB_00727 integrase/phage related protein
?REL606 2994085 = 16 (0.280)coding (731/2136 nt) speC ornithine decarboxylase, constitutive

AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGATTGGTGTTCTTTCAGTTCTTCAATTC  >  REL606/789222‑789292
                                   |                                   
aaaGTCTCCGCAATTACACGCAAGAAAAAACCGCCA                                     >  1:5340158‑M1/1‑36 (MQ=255)
 aaGGCTCCGCAATTACACGCAAGAAAAAACCGCCAt                                    >  1:855833/1‑36 (MQ=255)
  aGTCTCCGCAATTACACGCAAGAAAAAACCGCCATc                                   >  1:5088170/1‑36 (MQ=255)
     ctcCGAAATTACACGAAAAAAAAAACCGCCATCAgg                                <  1:1245362/36‑1 (MQ=25)
      tcCGCAATTACACGCAAGAAAAAACCGCCATCAGGc                               >  1:1298531/1‑36 (MQ=255)
         gaaaTAACACGAAAAAAAAAACCGCCATCAGGCGGa                            <  1:4078178/34‑1 (MQ=21)
          cAATTACACGCAAGAAAAAACCGCCATCAGGCGGAt                           >  1:6022111/1‑36 (MQ=255)
          cAATTACACACAAGAAAAACCCGCCATCAGGCGGAt                           <  1:436711/36‑1 (MQ=37)
          aaaTTACACGAAAAAAAAAACCGCCATCAGGCGGAt                           <  1:6993404/35‑1 (MQ=37)
           aaTTACACGCAAGAAAAAACCGCCATCAGGCGGAtt                          >  1:5497723/1‑36 (MQ=255)
           aaTTACACGCAAGAAAAAACCGCCATCAGGCGGAtt                          >  1:3201401/1‑36 (MQ=255)
            aTTACACGCAAGAAAAAACCGCCATCAGGCGGATTg                         >  1:7214721/1‑36 (MQ=255)
             ttACACGCAAGAAAAAACCGCCATCAGGCGGATTgg                        >  1:4891517/1‑36 (MQ=255)
             ttACACGCAAGAAAAAACCGCCATCAGGCGGATTgg                        <  1:1740123/36‑1 (MQ=255)
              tACACGAAAGAAAAAACCGCCATCAGGCGGATTGgt                       <  1:767403/36‑1 (MQ=255)
              tACACGAAAAAAAAAACCGCCATCAGGCGGATTGgt                       <  1:6912257/36‑1 (MQ=37)
               acacGCAAGAAAAAACCGCCATCAGGCGGATTGgtg                      >  1:4516339/1‑36 (MQ=255)
               acacGAAAAAAAAACCCGCCATCAGGCGGATTGgtg                      <  1:318814/36‑1 (MQ=25)
                cacGAAAGAAAAAACCGCCATCAGGCGGATTGgtgt                     <  1:3650997/36‑1 (MQ=255)
                cacGAAAAAAAAAACCGCCATCAGGCGGATTGgtgt                     <  1:5417666/36‑1 (MQ=37)
                 acGCAAGAAAAAATCGCCANCAGGCGGATTGGTGtt                    >  1:2642221/1‑36 (MQ=38)
                 acGCAAGAAAAAACCGCCATCAGGCGGATTGGTGtt                    >  1:6457229/1‑36 (MQ=255)
                 acGCAAGAAAAAACCGCCATCAGGCGGATTGGTGtt                    >  1:3727835/1‑36 (MQ=255)
                  cGCAAGAAAAAACCGCCATCAGGCGGATTGGTGTTc                   >  1:7360588/1‑36 (MQ=255)
                   gCAAGAAAAAACCGCCTTCAGGCGGTTTGGTGtttt                  >  1:5918637/1‑34 (MQ=37)
                   gCAAGAAAAAACCGCCATCAGGCGGATTGGTGTTCt                  >  1:4787620/1‑36 (MQ=255)
                   gCAAAAAAAAACCGCCAatgaaaccaaacgggttac                  <  1:167548‑M1/36‑20 (MQ=255)
                   aaaaGAAAAAACCGCCATCAGGCGGATTGGGGTTCt                  <  1:414421/34‑1 (MQ=38)
                    cAAAAAAAAACCGCCAatgaaaccaaacgggttacg                 <  1:2100222‑M1/36‑21 (MQ=255)
                     aaGAAAAAACCGCCATCAGGAGGATTGGTGTTCttt                >  1:6766274/1‑36 (MQ=255)
                      aaaaaaaaccGCCAatgaaaccaaacgggttacgtg               <  1:6271925‑M1/34‑23 (MQ=255)
                      aGAAAAAACCGCCATCAGGCGGATTGGTGTTCTTTc               >  1:4601771/1‑36 (MQ=255)
                      aGAAAAAACCGCCATCAGGAGGATTGGTGTTCTTTc               >  1:4367368/1‑36 (MQ=255)
                       aaaaaaaCCGCCATCGGGCGGATTGGTGTTCTTTCa              <  1:5309217/35‑1 (MQ=255)
                       aaaaaaaCCGCCATCAGGCGGATTGGTGTTCTTTCa              <  1:6172511/35‑1 (MQ=255)
                        aaaaaaCCGCCAatgaaaccaaacgggttacgtgaa             <  1:5698475‑M1/36‑25 (MQ=255)
                        aaaaaaCCGCCAatgaaaccaaacgggttacgtgaa             <  1:3371292‑M1/36‑25 (MQ=255)
                        aaaaaaCCGCCATCAGGCGGATTGGTGTTCTTTCAg             <  1:739731/36‑1 (MQ=255)
                         aaaaaCCGCCATCAGGCGGATTGGTGTTCTTTCAGt            <  1:2791251/36‑1 (MQ=255)
                          aaaaCCGCCATCAGGCGGATTGGTGTTCTTTCAGtt           <  1:4119705/36‑1 (MQ=255)
                           aaaCCGCCATCAGGCGGATTGGTGTTCTTTCAGttc          >  1:2061777/1‑36 (MQ=255)
                            aaCCGCCAatgaaaccaaacgggttacgtgaagctt         <  1:7406‑M1/36‑29 (MQ=255)
                            aaCCGCCATCAGGCGGATTGGTGTTCTTTCAGttct         <  1:5560471/36‑1 (MQ=255)
                            aaCCGCCATCAGGCGGATTGGTGTTCTTTCAGttct         >  1:6833420/1‑36 (MQ=255)
                             aCCGCCAatgaaaccaaacgggttacgtgaagcttc        <  1:5041275‑M1/36‑30 (MQ=255)
                             aCCGCCAatgaaaccaaacgggttacgtgaagcttc        <  1:2368453‑M1/36‑30 (MQ=255)
                             aCCGCCAatgaaaccaaacgggttacgtgaagcttc        >  1:7368513‑M1/1‑7 (MQ=255)
                             aCCGCCATCAGGCGGATTGGTGTTCTTTCAGttctt        >  1:275586/1‑36 (MQ=255)
                             aCCGCCATCAGGCGGATTGGTGTTCTTTCAGttctt        >  1:6131475/1‑36 (MQ=255)
                             aCCGCCATCAGGCGGATTGGTGCTCTTTCAGttctt        <  1:4282418/36‑1 (MQ=255)
                              ccGCCAatgaaaccaaacgggttacgttaagcttcc       <  1:3915342‑M1/36‑31 (MQ=255)
                              ccGCCAatgaaaccaaacgggttacgtgaagcttcc       >  1:6355264‑M1/1‑6 (MQ=255)
                              ccGCCAatgaaaccaaacgggttacgtgaagcttcc       <  1:4819520‑M1/36‑31 (MQ=255)
                              ccGCCATCAGGCGGATTGGTGTTCTTTCAGttcttc       >  1:1884494/1‑36 (MQ=255)
                               cGCCAatgaaaccaaacgggttacgtgaagcttcca      <  1:6025008‑M1/36‑32 (MQ=255)
                               cGCCATCAGGCGGATTGGTGTTCTTTCAGTTCTTCa      <  1:4486046/36‑1 (MQ=255)
                               cGCCATCAGGCGGATTGGTGTTCTTTCAGTTCTTCa      >  1:7362629/1‑36 (MQ=255)
                                gCCAatgaaaccaaacgggttacgtgaagcttccag     <  1:3616554‑M1/36‑33 (MQ=255)
                                gCCAatgaaaccaaacgggttacgtgaagcttccag     <  1:4000475‑M1/36‑33 (MQ=255)
                                 ccAatgaaaccaaacgggttacgtgaagcttccaga    <  1:4586797‑M1/36‑34 (MQ=255)
                                  cAatgaaaccaaacgggttacgtgaagcttccagat   >  1:4352566‑M1/1‑2 (MQ=255)
                                  cATCAGGCGGATTGGTGTTCTTTCAGTTCTTCAAtt   <  1:5254928/36‑1 (MQ=255)
                                  cATCAGGCGGATTGGTGTTCTTTCAGTTCTTCAAtt   <  1:3333645/36‑1 (MQ=255)
                                  cATCAGGCGGATTGGTGTTCTTTCAGTTCTTCAAtt   >  1:3530774/1‑36 (MQ=255)
                                   aTCAGGCGGATTGGTGTTCTTTCAGTTCTTCAATTc  >  1:3491716/1‑36 (MQ=255)
                                   aTCAGGCGGATTGGTGTTCTTTCAGTTCTTCAATTc  <  1:296309/36‑1 (MQ=255)
                                   |                                   
AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGATTGGTGTTCTTTCAGTTCTTCAATTC  >  REL606/789222‑789292

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 21 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG