New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2333536NA (NA)45 (0.740) 30/70 NT 54.9% noncoding (1441/1441 nt) ISRSO11 repeat region
?REL606 4415710 = 37 (0.610)coding (848/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

GCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTG  >  REL606/4415675‑4415745
                                   |                                   
gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGtt                                     <  1:2789705/36‑1 (MQ=255)
gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGtt                                     >  1:686068/1‑36 (MQ=255)
gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGtt                                     <  1:1827845/36‑1 (MQ=255)
 ccGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                    <  1:7326861/36‑1 (MQ=255)
 ccGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                    <  1:1909697/36‑1 (MQ=255)
 ccGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                    <  1:1752217/36‑1 (MQ=255)
 ccGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                    <  1:6142475/36‑1 (MQ=255)
  cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttg                                   >  1:6927131/1‑36 (MQ=255)
  cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttg                                   <  1:2680850/36‑1 (MQ=255)
  atataaaccgtccaacattatggggtcagttcattg                                   >  1:747583‑M2/34‑36 (MQ=255)
   tataaaccgtccaacattatggggtcagttcattgt                                  <  1:1513527‑M2/4‑1 (MQ=255)
   gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgt                                  <  1:972411/36‑1 (MQ=255)
   gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgt                                  <  1:2219169/36‑1 (MQ=255)
   gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgt                                  >  1:2962426/1‑36 (MQ=255)
   gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgt                                  <  1:74117/36‑1 (MQ=255)
   gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgt                                  >  1:5745378/1‑36 (MQ=255)
    ataaaccgtccaacattatggggtcagttcattgtt                                 >  1:3668716‑M2/32‑36 (MQ=255)
    ataaaccgtccaacattatggggtcagttcattgtt                                 >  1:5155005‑M2/32‑36 (MQ=255)
    ataaaccgtccaacattatggggtcagttcattgtt                                 >  1:10284‑M2/32‑36 (MQ=255)
    ataaaccgtccaacattatggggtcagttcattgtt                                 <  1:7566017‑M2/5‑1 (MQ=255)
    ataaaccgtccaacattatggggtcagttcattgtt                                 <  1:5513434‑M2/5‑1 (MQ=255)
      gAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtgaa                               >  1:2953906/1‑33 (MQ=255)
      gAGTTCGGTAGTCCCGGAGAAAAGCCCGTttgtgaa                               >  1:687556/1‑33 (MQ=255)
      aaaccgtccaacattatggggtcagttcaTTGTTGa                               <  1:2187432‑M2/7‑1 (MQ=255)
      aaaccgtccaacattatggggtcagttcaTTGTTGa                               <  1:6583454‑M2/7‑1 (MQ=255)
      aaaccgtccaacattatggggtcagttcaTTGTTGa                               <  1:6435919‑M2/7‑1 (MQ=255)
      aaaccgtccaacattatggggtcagttcaTTGTTGa                               >  1:7324920‑M2/30‑36 (MQ=255)
       aaccgtccaacattatggggtcagttcaTTGTTGaa                              >  1:1503796‑M2/29‑36 (MQ=255)
       aaccgtccaacattatggggtcagttcaTTGTTGaa                              >  1:3262614‑M2/29‑36 (MQ=255)
       aaccgtccaacattatggggtcagttcaTTGTTGaa                              <  1:1955429‑M2/8‑1 (MQ=255)
        accgtccaacattatggggtcagttcaTTGTTGAAc                             >  1:3017148‑M2/28‑36 (MQ=255)
         ttCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACt                            <  1:899894/36‑1 (MQ=255)
          tCGGTAGTCCCGGAGAAAAGCCCGTTTG.TGAACTgc                          <  1:2251279/36‑2 (MQ=37)
          tCGGTAGTCCCGGAGAAAAGCCCGTTTG.TGAACTgc                          <  1:5681569/36‑2 (MQ=37)
          cgtccaacattatggggtcagttcaTTGTTGAACTg                           >  1:5221065‑M2/26‑36 (MQ=255)
           cGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt                          <  1:5488340/36‑1 (MQ=255)
           cGGTAGTCCCGGAGAAAAGCCCGTTTG.TGAACTgca                         <  1:6900436/36‑3 (MQ=37)
            tccaacattatggggtcagttcaTTGTTGAACTGtt                         <  1:2725900‑M2/13‑1 (MQ=255)
             ccaacattatggggtcagttcaTTGTTGAATTGTTc                        >  1:7378758‑M2/23‑36 (MQ=255)
             ccaacattatggggtcagttcaTTGTTGAACTGTTc                        >  1:3639146‑M2/23‑36 (MQ=255)
             ccaacattatggggtcagttcaTTGTTGAACTGTTc                        >  1:2133263‑M2/23‑36 (MQ=255)
              caacattatggtgtcagttcaTTGTTGAACTGTTCg                       <  1:4216836‑M2/15‑1 (MQ=255)
               aacattatggggtcagttcaTTGTTGAACTGTTCgt                      <  1:3489465‑M2/16‑1 (MQ=255)
               aacattatggggtcagttcaTTGTTGAACTGTTCgt                      >  1:4991975‑M2/21‑36 (MQ=255)
               aGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgt                      <  1:5808370/36‑1 (MQ=255)
                gTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg                     <  1:7220462/36‑1 (MQ=255)
                gTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg                     <  1:5957469/36‑1 (MQ=255)
                gTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCgtg                     <  1:788092/36‑1 (MQ=255)
                acattatggggtcagttcaTTGTTGAACTGTTCgtg                     <  1:1797768‑M2/17‑1 (MQ=255)
                acattatggggtcagttcaTTGTTGAACTGTTCgtg                     <  1:3390569‑M2/17‑1 (MQ=255)
                  attatggggtcagttcaTTGTTGAACTGTTCGTGtt                   >  1:6555366‑M2/18‑36 (MQ=255)
                  attatggggtcagttcaTTGTTGAACTGTTCGTGtt                   <  1:7332265‑M2/19‑1 (MQ=255)
                   ttatggggtcagttcaTTGTTGAACTGTTCGTGTTg                  >  1:191832‑M2/17‑36 (MQ=255)
                   ttatggggtcagttcaTTGTTGAACTGTTCGTGTTg                  >  1:5770871‑M2/17‑36 (MQ=255)
                     ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                >  1:2971468/1‑36 (MQ=255)
                     ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                <  1:3335805/36‑1 (MQ=255)
                     ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                <  1:7334848/36‑1 (MQ=255)
                     ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGt                >  1:3532795/1‑36 (MQ=255)
                     atggggtcagttcaTTGTTGAACTGTTCGTGTTGGt                <  1:4651356‑M2/22‑1 (MQ=255)
                     atggggtcagttcaTTGTTGAACTGTTCGTGTTGGt                >  1:4504562‑M2/15‑36 (MQ=255)
                      tggggtcagttcaTTGTTGAACTGTTCGTGTTGGTa               >  1:1336236‑M2/14‑36 (MQ=255)
                      tggggtcagttcaTTGTTGAACTGTTCGTGTTGGTa               <  1:7235297‑M2/23‑1 (MQ=255)
                      tggggtcagttcaTTGTTGAACTGTTCGTGTTGGTa               <  1:4878960‑M2/23‑1 (MQ=255)
                      gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTa               <  1:5449001/36‑1 (MQ=255)
                      gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTa               >  1:3694716/1‑36 (MQ=255)
                      gagaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTa               <  1:3707236/36‑1 (MQ=255)
                      gagaAAAGCCCGTCTGTTGAACTGTGCGTGTTGGTa               >  1:1542037/1‑36 (MQ=38)
                       agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAg              <  1:6841368/36‑1 (MQ=255)
                       agaAAAGCCCGTTTGTTGAACTGTTCGCGTTGGGAg              >  1:5678554/1‑36 (MQ=25)
                        gggtcagttcaTTGTTGAACTGTTCGTGTTGGTAgg             <  1:6847613‑M2/25‑1 (MQ=255)
                        gaAGAGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg             <  1:1403873/36‑1 (MQ=255)
                         ggtcagttcaTTGTTGAACTGTTCGTGTTGGTAggg            <  1:4299738‑M2/26‑1 (MQ=255)
                          gtcagttcaTTGTTGAACTGTTCGTGTTGGTAGGGc           <  1:674958‑M2/27‑1 (MQ=255)
                          gtcagttcaTTGTTGAACTGTTCGTGTTGGTAGGGc           <  1:102029‑M2/27‑1 (MQ=255)
                           gcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGct          <  1:2065446‑M2/28‑1 (MQ=255)
                           aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct          >  1:6145362/1‑36 (MQ=255)
                           aaGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGct          >  1:5973377/1‑36 (MQ=255)
                            cagttcaTTGTTGAACTGTTCGTGTTGGTAGGGctg         <  1:2497315‑M2/29‑1 (MQ=255)
                             agttcaTTGTTGAACTGTTCGTGTTGGTAGGGctgc        >  1:6714583‑M2/7‑36 (MQ=255)
                             agttcaTTGTTGAACTGTTCGTGTTGGTAGGGctgc        >  1:6937113‑M2/7‑36 (MQ=255)
                               ttcaTTGTTGAACTGTTCGTGTTGGTAGGGctgcct      <  1:4829627‑M2/32‑1 (MQ=255)
                                cGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctg     >  1:507224/1‑36 (MQ=255)
                                  tttGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct   >  1:5165571/1‑36 (MQ=255)
                                  aTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct   >  1:5495282‑M2/2‑36 (MQ=255)
                                  aTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct   >  1:4916574‑M2/2‑36 (MQ=255)
                                   ttgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg  >  1:4454959/1‑36 (MQ=255)
                                   ttgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg  >  1:2868237/1‑36 (MQ=255)
                                   ttgttgAACTGTTCGTGTTGGTAGGGCTGCctgctg  >  1:1644665/1‑36 (MQ=255)
                                   |                                   
GCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTG  >  REL606/4415675‑4415745

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG