Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,516,335 | A→T | 14.2% | intergenic (+166/+417) | yjhR → / ← yjhS | frameshift suppressor contains phospolipase D/nuclease; b4308_2/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,516,335 | 0 | A→T | 14.2% | 7.3 ‑4.4 0.0 | 39 | intergenic (+166/+417) | yjhR/yjhS | frameshift suppressor contains phospolipase D/nuclease; b4308_2/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (12/21): total (18/21) | ||||||||||
Fisher's exact test strand distribution p-value = 1.23e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAAT > REL606/4516300‑4516370
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gCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTa < 1:6761036/36‑1 (MQ=255)
cATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAg < 1:6104447/36‑1 (MQ=255)
cATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAg < 1:3785844/36‑1 (MQ=255)
aTAATGCGCCTGGGATTAATGGCGTGTGCTTTTAgg < 1:6785474/36‑1 (MQ=255)
tAATGCGCCTGGGGTTAATGGCGGGGGGTTTTGGGa > 1:640053/1‑36 (MQ=16)
tAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGa < 1:3257740/36‑1 (MQ=255)
tAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGa < 1:8291050/36‑1 (MQ=255)
aaTGCGCCTGGGATTAATGGCGGGTGGTTTTTggga > 1:3380735/1‑34 (MQ=25)
aTGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAAt < 1:5646642/36‑1 (MQ=255)
gcgcCTGGGATTAATGGCGGGTGCTTTTAGGAATga < 1:4033675/36‑1 (MQ=255)
gcgcCTGGGATTAATGGCGGGGGCTTTTTGGAGTga > 1:1693529/1‑36 (MQ=25)
cgcCTGGGATTAATGGCGGGTGCTTTTAGGAATgaa < 1:5324734/36‑1 (MQ=255)
cgcCTGGGATTAATGGCGGGTGCTTTTAGGAATgaa < 1:4082173/36‑1 (MQ=255)
cgcCTGGGATTAATGGCGGGGGGTTTTTGGGATgta > 1:5761154/1‑34 (MQ=16)
tGGGATTAATGGCGGGGGGTTTTTTGGATtaaagaa > 1:2355912/1‑36 (MQ=9)
gggATTAATGGCGGGTGCTTTTAGGAATgaaagaaa < 1:571439/36‑1 (MQ=255)
ggATTAATGGCGGGTGCTTTTAGGAATGAAAGaaaa < 1:4373006/36‑1 (MQ=255)
gATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAAt < 1:6638744/36‑1 (MQ=255)
aTTAATGGCGGGTGGTTTTTTGGATTAAAGaaaaag > 1:7491346/1‑34 (MQ=12)
ttAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgc < 1:5365818/36‑1 (MQ=255)
ttAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgc < 1:2122208/36‑1 (MQ=255)
tGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaagc > 1:4003164/1‑36 (MQ=255)
tGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaagc < 1:5711909/36‑1 (MQ=255)
ggCGGGTGCTTTTAGGAATGAAAGAAAATgcaagca > 1:8342974/1‑36 (MQ=255)
ggCGGGTGCTTTTAGGAATGAAAGAAAATgcaagca < 1:7465955/36‑1 (MQ=255)
cGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCaat > 1:4187128/1‑36 (MQ=255)
gggTGCTTTTAGGAATGAAAGAAAATGCAAGCaata > 1:7343854/1‑36 (MQ=255)
gggTGCTTTTAGGAATGAAAGAAAATGCAAGCaata < 1:7614798/36‑1 (MQ=255)
ggTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa > 1:8086601/1‑36 (MQ=255)
ggTGATTTTAGGAATGAAAGAAAATGCAAGCaataa < 1:1955637/36‑1 (MQ=255)
gTGCTTTTAGGAATGAAAGAAAATGCAAGCaataat > 1:1601437/1‑36 (MQ=255)
tGCTTTTAGGAGTGAAAGAAAATGCAAGCAataata > 1:1459309/1‑36 (MQ=255)
tGCTTTTAGGAATGAAAGAAAATGCAAGCAataata > 1:879112/1‑36 (MQ=255)
gCTTTTAGGAATGAAAGAAAATGCAAGCAataatat > 1:2453872/1‑36 (MQ=255)
cTTTTAGGAATGAAAGAAAATGCCAGCAataatata < 1:6970931/36‑1 (MQ=255)
cTTTTAGGAATGAAAGAAAATGCAAGCAataatata < 1:559840/36‑1 (MQ=255)
cTTTTAGGAATGAAAGAAAATGCAAGCAataatata > 1:5211939/1‑36 (MQ=255)
cTTTTAGGAATGAAAGAAAATGCAAGCAataatata > 1:3602493/1‑36 (MQ=255)
tttAGGAATGAAAGAAAATGCAAGCAataatataat > 1:3299922/1‑36 (MQ=255)
ttAGGAATGAAAGAAAATGCAAGCAAtaatataata < 1:7121318/36‑1 (MQ=255)
aGGAATGAAAGAAAATGCAAGCAATAATATaataat < 1:6215798/36‑1 (MQ=255)
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GCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAAT > REL606/4516300‑4516370
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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