Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 123,018 | A→T | 21.9% | F446L (TTT→TTA) | aroP ← | aromatic amino acid transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 123,018 | 0 | A→T | 21.9% | 6.3 ‑4.1 ‑0.0 | 27 | 1338 | aroP | aromatic amino acid transporter |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (8/13): total (14/13) | ||||||||||
Fisher's exact test strand distribution p-value = 1.59e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.79e-01 |
TAATGCGCTTTTACGGCTTTGGC.GGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATAC > REL606/122983‑123053
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tAATGCGCTTTTACGTCTTTGGC.TGTTTTCTCTTTa < 1:4215564/36‑1 (MQ=37)
aTGCGCTTTTACTTCTTTGGC.GGTTTTCTCTTTaaa < 1:338184/36‑1 (MQ=37)
aTGCGCTTTTACGGCTTTGGC.GGTTTTTTTTTTtaa > 1:297807/1‑36 (MQ=21)
aTGCGCTTTTACGGCTTTGGC.GGTTTTCTCTTTaaa < 1:935324/36‑1 (MQ=255)
ttcgcTTTTACGGCTTTGGC.GGTTTTCTCTTTAAAc < 1:6715145/34‑1 (MQ=255)
gcgcTTTTACGGCTTTGGCGGGTTTTTTCTTTaaga > 1:376920/1‑34 (MQ=18)
cgcTTTTACGGCTTTGGC.GGTTTTCTCTTTAAACAg < 1:2196580/36‑1 (MQ=255)
cgcTTTTACGGCTTTGGC.GGTTTTCTCTTTAAACAg < 1:2038440/36‑1 (MQ=255)
cgcTTTTACGGCTTTGGC.GGGTTTTTTTTTTAATAg > 1:1422048/1‑36 (MQ=12)
gcTTTTACGGCTTTGGC.GGTTTTTTCTTTTAACAGa > 1:6886460/1‑36 (MQ=37)
cTTTTACGGCTTTGGC.GGTTTTTTTTTTTAACAAAt > 1:2516279/1‑36 (MQ=16)
tttACGGCTTTGGC.GGTTTTCTCTTTAAACAGATAg < 1:2290925/36‑1 (MQ=255)
cGGCTTTGGC.GGTTTTTTTTTTTAACAGATAGCCgt > 1:2366157/1‑35 (MQ=21)
cGGCTTTGGC.GGTTTTTTCTTTTAACAAATATCCGa > 1:799647/1‑36 (MQ=16)
ggCTTTGGC.GGTTTTCTCTTTAAACAGATAGCCGAt > 1:392489/1‑36 (MQ=255)
gCTTTGGC.GGTTTTTTCTTTTAACAGATATCCGGTa > 1:6565137/1‑36 (MQ=16)
gCTTTGGC.GGTTTTTTCTTTAAACAGATAGCCGATa < 1:3994926/36‑1 (MQ=255)
cTTTGGC.GGTTTTTTCTTTAAACAGATAGCCGATAc > 1:3755724/1‑36 (MQ=255)
cTTTGGC.GGTTTTCTCTTTAAACAAATAACCGATAc > 1:7548858/1‑36 (MQ=37)
gC.GGTTTTCTCTTTAAACATATAGCCGATACCTAac < 1:2482432/36‑1 (MQ=255)
c.GGTTTTCTCTTTAAACAGATAGCCGATACCTAaca < 1:1084656/36‑1 (MQ=255)
ctgTTTTCTCTTTAAACAGATAGCCGATACCTAaca < 1:6487020/34‑1 (MQ=255)
ggTTTTCTCTTTAAACAGATAGCCGATACCTAacac < 1:3538401/36‑1 (MQ=255)
ggTTTTCTCTTTAAACAGATAGCCGATACCTAacac < 1:3580691/36‑1 (MQ=255)
ggTTTTCTCTTTAAACAGATAGCCGATACCTAacac > 1:3583543/1‑36 (MQ=255)
gTTTTCTCTTTAAACAGATAGCCGATACCTAACACg > 1:1299980/1‑36 (MQ=255)
ttttCTCTTTAAACAGATAGCCGATACCTAACACGa < 1:1322080/36‑1 (MQ=255)
ttttCTCTTTAAACAGATAGCCGATACCTAACACGa > 1:5756449/1‑36 (MQ=255)
ttttCTATTTAAACAGATAGTGGATACCGAACATGa > 1:1952302/1‑36 (MQ=12)
tttCTCTTTAAACAGATAGCCGATACCTAACACGAt > 1:6912069/1‑36 (MQ=255)
tctcTTTAAACAGATAGCCGATACCTAACACGATCa < 1:3914740/36‑1 (MQ=255)
ctatttAAACAGATAGCCGATACCTAACACGATCAg < 1:427808/33‑1 (MQ=255)
aaaaCAAATAGCCGATACCTAACACGATCAGCCATa < 1:4913896/35‑1 (MQ=255)
aaaCAGATAGCCGATACCTAACACGATCAGCCATAc > 1:6198124/1‑36 (MQ=255)
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TAATGCGCTTTTACGGCTTTGGC.GGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATAC > REL606/122983‑123053
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
|