New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 327811637 (0.620)6 (0.100) 6/70 NT 13.3% coding (46/576 nt) yrbK hypothetical protein
?REL606 4541608 = 41 (0.680)intergenic (‑14/‑236) yjiH/kptA conserved inner membrane protein/RNA 2'‑phosphotransferase‑like protein

CAGCATCCCCTTGTTGTGTCATAACAATCCCCATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAA  >  REL606/4541573‑4541643
                                   |                                   
cagacgttgggttatcattgtgctatcactggcggg                                     >  1:7548909‑M2/36‑36 (MQ=255)
cAGCATCCCCTTGTTGTGTCATAACAATCCCCATTg                                     <  1:4012040/36‑1 (MQ=255)
cAGCATCCCCTTGTTGTGTCATAACAATCCCCATTg                                     >  1:2189161/1‑36 (MQ=255)
cAGCATCCCCTTGTTGTGTCATAACAATCCCCATTg                                     <  1:4519294/36‑1 (MQ=255)
 aGCATCCCCTTGTTGTGTCATAACAATCCCCATTGt                                    >  1:1738989/1‑36 (MQ=255)
  gCATCCCCTTGTTGTGTCATAACAATCCCCATTGtt                                   >  1:760749/1‑36 (MQ=255)
   acgttgggttatcattgtgctatcactggcggGttt                                  >  1:5208002‑M2/33‑36 (MQ=255)
     tCCCCTTGTTGTGTCATAACAATCCCCATTGttttt                                <  1:733675/36‑1 (MQ=255)
     tCCCCTTGTTGTGTCATAACAATCCCCATTGttttt                                >  1:4329225/1‑36 (MQ=255)
     gttgggttatcattgtgctatcactggcggGttttt                                >  1:4139583‑M2/31‑36 (MQ=255)
      ccccTTGTTGTGTCATAACAATCCCCATTGtttttt                               >  1:3063986/1‑36 (MQ=255)
      ccccTTGTTGTGTCATAACAATCCCCATTGtttttt                               <  1:2074907/36‑1 (MQ=255)
        ccTTGTTGTTTCATAACAACCCCCATTGTTTTtttg                             <  1:5827756/36‑1 (MQ=37)
        ccTTGTTGTGTCATAACAATCCCCATTGTTTTtttg                             <  1:2742851/36‑1 (MQ=255)
         ggttatcattgtgctatcactggcggGTTTGtttgt                            >  1:7744554‑M2/27‑36 (MQ=255)
         cTTGTTGTGTCATAACAATCCCCATTGttttttgtg                            >  1:558538/1‑33 (MQ=255)
          ttgttgTGTCATAACAATCCCCATTGTTTTtttgtt                           >  1:7379729/1‑35 (MQ=255)
           tgttgtGTCATAACAATCCCCATTGTTTTtttgtgt                          <  1:3554790/36‑1 (MQ=255)
            tatcattgtgctatcactggcggGTTTTtttgtgtt                         >  1:7615538‑M2/24‑36 (MQ=255)
            gttgtGTCATAACAATCACCATTGTTTTttcttgtt                         >  1:2958243/1‑36 (MQ=21)
             ttgtTTCATAACAATCCCCATTGTTTTtttgtgttt                        <  1:4785548/36‑1 (MQ=255)
              tgtgTCATAACAATCCCCATTGTTTTtttgtgtttt                       >  1:1470792/1‑35 (MQ=255)
              tgtgTCATAACAATCCCCATTGTTTTtttgtgtttg                       >  1:3834183/1‑36 (MQ=255)
              tcattgtgctatcactggcggGTTTTtttgtgtttg                       >  1:4751279‑M2/22‑36 (MQ=255)
                tgtCATAACAATCCCCATTGTTTTtttgtgtttgtg                     <  1:3046689/36‑1 (MQ=255)
                  tCATAACAATCCCCATTGTTTTTttgtgtttgtgtt                   >  1:2342924/1‑35 (MQ=255)
                  tCATAACAATCCCCATTGTTTTTTTGTGTTtgtgtg                   <  1:6168589/36‑1 (MQ=255)
                  tCATAACAATCCCCATTGTTTTTTTGTGTTtgtgtg                   >  1:6078627/1‑36 (MQ=255)
                   cATAACAATCCCCATTGTTTTTTTGTGTTTgtgtgt                  <  1:297784/36‑1 (MQ=255)
                    aTAACAATCCCCATTGTTTTTTTGTGTTTGTGTGtt                 >  1:7490789/1‑36 (MQ=255)
                     tAACAATCCCCATTGTTTTTTTGTGTTTGTGTGTTg                <  1:1651353/36‑1 (MQ=255)
                     tAACAATCCCCATTGTTTTTTTGTGTCTGTGTTTTg                >  1:7298542/1‑36 (MQ=37)
                     tAACAATCCCCATTGGTTTTTTGTGTTTTTGTGttt                >  1:2262633/1‑35 (MQ=37)
                      aaCAATCCCCATTGTTTTTTTGTGTTTGTGTGTTGc               <  1:2758032/36‑1 (MQ=255)
                        cAATCCCCATTGTTTTTTTGTGTTTGTGTGTTGCtt             <  1:6859738/36‑1 (MQ=255)
                        cAATCCCCATTGTTTTTTTGTGTTTGTGTGTTGCtt             <  1:2866640/36‑1 (MQ=255)
                         aaTCCCCATTGTTTTTTTGTGTTTGTGTGTTGCTTg            <  1:2191099/36‑1 (MQ=255)
                           tCCCCATTGTTTTTTTGTGTTTGTGTGTTGCTTGAg          <  1:6582317/36‑1 (MQ=255)
                             cccATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGcc        >  1:4432262/1‑36 (MQ=255)
                              ccATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCa       <  1:561997/36‑1 (MQ=255)
                              ccATTGTTTTTTTGAGTTTGTGTGTTGCTTGAGCCa       <  1:4585470/36‑1 (MQ=255)
                               cATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAg      <  1:2205391/36‑1 (MQ=255)
                                aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAgg     <  1:2523710/36‑1 (MQ=255)
                                aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAgg     <  1:262577/36‑1 (MQ=255)
                                aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAgg     >  1:5129903/1‑36 (MQ=255)
                                 ttGTTTTTTTGTGTTTGTGTGTTTCTTGAGCCAGGa    >  1:6076718/1‑36 (MQ=255)
                                 ttGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGa    <  1:2044652/36‑1 (MQ=255)
                                   gTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGaaa  >  1:5856368/1‑36 (MQ=255)
                                   |                                   
CAGCATCCCCTTGTTGTGTCATAACAATCCCCATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAA  >  REL606/4541573‑4541643

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG