New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2408209NA (NA)5 (0.090) 5/64 NT 6.9% noncoding (1/768 nt) IS1 repeat region
?REL606 = 4621899 68 (1.120)coding (7/522 nt) yjjX NTPase

AATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTA  >  REL606/4621864‑4621934
                                   |                                   
aaTTTTAGCGGGATTGGTGGTCGCACAGCCAACTTG                                     >  1:2126413‑M2/1‑36 (MQ=255)
aaTTTTAGCGGGATTGGTGGTCGCACAGACAACTTG                                     >  1:5553195‑M2/1‑36 (MQ=255)
aaTTTTAGCGGGATTGGTGGTCGCACAGACAACTTG                                     <  1:6216886‑M2/36‑1 (MQ=255)
aaTTTTAGCGGGATTGGTGGTCGCACAGACAACTTG                                     >  1:7540035‑M2/1‑36 (MQ=255)
  ttttAGCGGGATTGGTGGTCGCACAGACAACTTGGt                                   <  1:7863013/36‑1 (MQ=255)
  ttttAGCGGGATTGGTGGTCGCACAGACAACTTGGt                                   <  1:4492171/36‑1 (MQ=255)
   tttAGCGGGATTGGTGGTTGCACAGACAACTTTGTg                                  >  1:2681947/1‑36 (MQ=38)
   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTg                                  <  1:140946/36‑1 (MQ=255)
   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTg                                  >  1:6834457/1‑36 (MQ=255)
    ttAGCGGGATTGGTGGTCGCACAGACAACTTGggtg                                 >  1:7765194‑M2/1‑32 (MQ=255)
    ttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGc                                 <  1:1231751/36‑1 (MQ=255)
     tAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCa                                >  1:5201618/1‑36 (MQ=255)
     tAGCGGGATTGGCGGTCGCACAAACAACTTGGTGCa                                >  1:7073828/1‑36 (MQ=37)
      aGCGGGATTGGTGGTCGCACAGACAACTTGGTGCAt                               <  1:4989430/36‑1 (MQ=255)
      aGCGGGATTGGTGGTCGCACAGAAAAATTGGGGCAt                               >  1:5571592/1‑36 (MQ=25)
       gCGGTATTGGTGGTCGCACAGACAACTTGGTGCATa                              <  1:1800350/36‑1 (MQ=255)
       gCGGGATTGGTGGTCGCACAGACAACTTGGTGCATa                              <  1:6427514/36‑1 (MQ=255)
       gCGGGATTGGTGGTCGCACAGACAACTTGGTGCATa                              <  1:6096502/36‑1 (MQ=255)
       gCGGGATTGGTGGTCGCACAGACAACTTGGTGCATa                              <  1:1323690/36‑1 (MQ=255)
         gggATTGGTGTTCGCACAGACAACTTGggtgatgct                            >  1:5410561‑M2/1‑27 (MQ=255)
         gggATTGGTGTTCGCACAGACAACTTGGTGCATAAt                            <  1:82531/36‑1 (MQ=255)
         gggATTGGTGGTCGCACAGACAACTTGggggatgct                            <  1:3355618‑M2/36‑10 (MQ=255)
         gggATTGGTGGTCGCACAGACAACTTGGTGCATAAt                            <  1:1273771/36‑1 (MQ=255)
         gggATTGGTGGTCGCACAGACAACTTGGTGCATAAt                            <  1:4499953/36‑1 (MQ=255)
         gggATTGGTGGTCGCACAGACAACTTGGTGCATAAt                            <  1:7255753/36‑1 (MQ=255)
          ggATTGGTGGTCGCACAGACAACTTGGTGCATAATc                           <  1:5989451/36‑1 (MQ=255)
          ggATTGGTGGTCGCACAGACAACTTGGTGCATAATc                           <  1:490322/36‑1 (MQ=255)
          ggATTGGTGGTCGCACAGACAACTTGGTGCATAATc                           >  1:527530/1‑36 (MQ=255)
           gATTGGTGGTCGCACAGACAACTTGGTGCATAATCa                          <  1:5110522/36‑1 (MQ=255)
           gATTGGTGGTCGCACAGACAACTTGGTGCATAATCa                          <  1:5446329/36‑1 (MQ=255)
           gATTGGTGGTCGCACAGACAACTTGGTGCATAATCa                          <  1:6120052/36‑1 (MQ=255)
            aTTGGTGGTCGCACAGACAACTTTGTGCATAATCAg                         >  1:890553/1‑36 (MQ=255)
            aTTGGTGGTCGCACAGACAACTTGggtgatgctgcc                         >  1:4609409‑M2/1‑24 (MQ=255)
             ttGGTGGTCGCACAGACAACTTGGTGCATAATCAGc                        <  1:1148094/36‑1 (MQ=255)
             ttGGTGGTCGCACAGACAACTTGGTGCATAATCAGc                        <  1:2492414/36‑1 (MQ=255)
             ttGGTGGTCGCACAGACAACTTGGTGCATAATCAGc                        <  1:2402334/36‑1 (MQ=255)
             ttGGTGGTCGCACAGACAACTTGGTGCATAATCAGc                        <  1:1624270/36‑1 (MQ=255)
                gtggtCGCACAGACAACTTGGTGCATAATCAGCAtt                     >  1:601408/1‑36 (MQ=255)
                gtggtCGCACAGACAACTTGGTGCATAATCAGCAtt                     >  1:5333852/1‑36 (MQ=255)
                gtggtCGCACAGACAACTTGGTGCATAATCAGCAtt                     >  1:7584652/1‑36 (MQ=255)
                gtggtCGCACAGACAACTTGGTGCATAATCAGCAtt                     >  1:3967555/1‑36 (MQ=255)
                 tggtCGCACAGACAACTTGGTGCATAATCAGCATTa                    >  1:7609508/1‑36 (MQ=255)
                  ggtCGCACAGACAACTTGGTGCATAATCAGCATTAc                   <  1:1453985/36‑1 (MQ=255)
                   gtggCACAGTCAACTTGGTGCATAATCAGCATTACt                  <  1:7794844/33‑1 (MQ=37)
                   gtCGCACAGACAACTTGGTGCATAATCAGCATTACt                  <  1:1522115/36‑1 (MQ=255)
                   gtCGCACAGACAACTTGGTGCATAATCAGCATTACt                  >  1:4849453/1‑36 (MQ=255)
                     cGCACAGACAACTTGGTGCATAATCAGCATTACTCa                <  1:6821232/36‑1 (MQ=255)
                     cGCACAGACAACTTGGTGCATAATCAGCATTACTCa                <  1:6500090/36‑1 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               <  1:652401/36‑1 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               >  1:6479893/1‑36 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               >  1:7879697/1‑36 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               <  1:4640336/36‑1 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               >  1:5593025/1‑36 (MQ=255)
                      gCACAGACAACTTGGTGCATAATCAGCATTACTCAg               <  1:3161968/36‑1 (MQ=255)
                       cacaGACAACTTGGTGCATAATCAGCATTACTCAGa              <  1:4339049/36‑1 (MQ=255)
                       cacaGACAACTTGGTGCATAATCAGCATTACTCAGa              >  1:4792442/1‑36 (MQ=255)
                        acaGACAACTTGGTGCATAATCAGCATTACTCAGaa             <  1:6998041/36‑1 (MQ=255)
                         caGACAACTTGGTGCATAATCAGCATTACTCAGaaa            >  1:7845949/1‑36 (MQ=255)
                         caGACAACTTGGTGCATAATCAGCATTACTCAGaaa            >  1:7387969/1‑36 (MQ=255)
                         caGACAACTTGGTGCATAATCAGCATTACTCAGaaa            <  1:1793235/36‑1 (MQ=255)
                         caGACAACTTGGAGCATAATCAGCATTACTCAGaaa            >  1:2763056/1‑36 (MQ=255)
                          cgACAACTTGGTGCATAATCAGCATTACTCAGaaaa           >  1:2512740/2‑36 (MQ=255)
                           gACAACTTGGTGCATAATCAGCATTACTCAGAAAAt          >  1:3978972/1‑36 (MQ=255)
                           gACAACTTGGTGCATAATCAGCATTACTCAGAAAAt          >  1:7345118/1‑36 (MQ=255)
                            aCAACTTGGTGCATAATCAGCATTACTCAGAAAAtt         <  1:1908583/36‑1 (MQ=255)
                            aCAACTTGGTGCATAATCAGCATTACTCAGAAAAtt         >  1:367504/1‑36 (MQ=255)
                             cAACTTGggtgatgctgccaacttactgatttagtg        >  1:7458528‑M2/1‑7 (MQ=255)
                               aCTTGGTTAATAATCAGCATTACTCAAAAAATTAAc      <  1:7892353/36‑1 (MQ=25)
                               aCTTGGTGCATAATCAGCATTACTCAGAAAATTAAc      >  1:3251810/1‑36 (MQ=255)
                               aCTTGGTGCATAATCAGCATTACTCAGAAAATTAAc      >  1:2613690/1‑36 (MQ=255)
                               aCTTGGTGCATAATCAGCATTACTCAGAAAATTAAc      >  1:1350882/1‑36 (MQ=255)
                               aCTTGGTGCATAATCAGCATTACTCAGAAAATTAAc      >  1:7012193/1‑36 (MQ=255)
                                cTTGGTGCATAATCAGCATTACTCAGAAAATTAACg     >  1:4214303/1‑36 (MQ=255)
                                  tGGTGCATAATCAGCATTACTCAGAAAATTAACGtt   <  1:3414233/36‑1 (MQ=255)
                                  tGGTGCATAATCAGCATTACTCAGAAAATTAACGtt   <  1:1826124/36‑1 (MQ=255)
                                  tGGTGCATAATCAGCATTACTCAGAAAATTAACGtt   <  1:3021331/36‑1 (MQ=255)
                                  tGGTGCATAATCAGCATTACTCAGAAAATTAACGtt   >  1:1956043/1‑36 (MQ=255)
                                   ggTGCATAATCAGCATTACTCAGAAAATTAACGTTa  >  1:4677458/1‑36 (MQ=255)
                                   |                                   
AATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTA  >  REL606/4621864‑4621934

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG