Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,336,064 | T→G | 15.4% | I168L (ATC→CTC) | nuoM ← | NADH dehydrogenase subunit M |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,336,064 | 0 | T→G | 15.4% | 19.8 0.0 ‑0.0 | 65 | 502 | nuoM | NADH dehydrogenase subunit M |
Reads supporting (aligned to +/- strand): new base (5/5): ref base (28/26): total (34/31) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.77e-01 |
CTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACA > REL606/2336029‑2336099
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cTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGAt < 1:6951050/36‑1 (MQ=255)
cTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGAt > 1:209966/1‑36 (MQ=255)
tGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATa > 1:7212305/1‑36 (MQ=255)
tGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATa > 1:6343624/1‑36 (MQ=255)
ggTGTAAATGAAGAACTTGGTTGCCGCCGTGATAcg > 1:6243000/1‑36 (MQ=255)
ggTGTAAATGAAGAACTTGGTTGCCGCCGTGAGAcg < 1:6192150/36‑1 (MQ=255)
ggTGTAAATGAAGAACTTGGTTGCCGCCGTGAGAcg > 1:765977/1‑36 (MQ=255)
gtgtAAATGAAGAACTTGGTTGCCGACGTGAGAcgc > 1:2955505/1‑36 (MQ=37)
tgtAAATGAAGAACTTTGTTGCCGCCGTGATAcgcg > 1:493147/1‑36 (MQ=255)
tgtAAATGAAGAACTTGGTTGCCGCCGTGATAcgcg > 1:3081062/1‑36 (MQ=255)
gtAAATGAAGAACTTGGTTGCCGCCGTGATACGCGt > 1:1839912/1‑36 (MQ=255)
gtAAATGAAGAACTTGGTTGCCGCCGTGATACGCGt > 1:1681536/1‑36 (MQ=255)
gtAAATGAAGAACTTGGTTGCCGCCGTGATACGCGt < 1:7181525/36‑1 (MQ=255)
gtAAATGAAGAACTTGGTTGCCGCCGTGATACGCGt < 1:7187337/36‑1 (MQ=255)
gtAAATGAAGAACTTGGTTGCCGCCGTGATACGCGt > 1:926984/1‑36 (MQ=255)
gcaaaTGAAGAACTGCGTTGCCGCCGTGACACGCGt > 1:624553/3‑36 (MQ=21)
tAAATGAAGAACTTGGTTGCCGCCGTGATACGCGtt > 1:200903/1‑36 (MQ=255)
tAAATGAAGAACTTGGTTGCCGCCGTGATACGCGtt < 1:584936/36‑1 (MQ=255)
aaaTGAAGAACTTGGTTGCCGCCGTGATACGCGttt > 1:4911258/1‑36 (MQ=255)
aaaTGAAGAACTTGGTTGCCGCCGTGAGACGCGttt < 1:4332089/36‑1 (MQ=255)
aaaAGAAGAACTTGGTTGCCGCCGTGATCCGCGttt < 1:3503189/36‑1 (MQ=37)
aaTGAAGAACTTGGTTGCCGCCGTGATTCGCGtttt > 1:6871687/1‑36 (MQ=255)
aaTGAAGAACTTGGTTGCCGCCGTGATACGCGtttt < 1:2389255/36‑1 (MQ=255)
aaTGAAGAACTTGGTTGCCGCCGTGATACGCGtttt < 1:7406522/36‑1 (MQ=255)
aaTGAAGAACTTGGTTGCCGCCGTGATACGCGtttt > 1:376551/1‑36 (MQ=255)
aaTGAAGAACTTGGTTGCCGCCGAGATACGCGtttt > 1:7796589/1‑36 (MQ=255)
ataaagaaCTTGGTTGCCGCCGTGATACGCGTTTTa < 1:1025680/33‑1 (MQ=255)
aTGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTa < 1:7369057/36‑1 (MQ=255)
aTGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTa < 1:7223548/36‑1 (MQ=255)
gaagaaCTTGGTTGCCGCCGTGATACGCGTTTTAcc < 1:7040336/36‑1 (MQ=255)
aagaaCTTGGTTGCCGCCGTGATACGCGTTTTACCg > 1:1289776/1‑36 (MQ=255)
agaaCTTGGTTGCCGCCGTGATACGCGTTTTACCGt > 1:1157696/1‑36 (MQ=255)
aaCTTGGTTGCCGCCGTGATACGCGTTTTACCGTCa < 1:3605764/36‑1 (MQ=255)
aCTTGGTTGCCGCCGTGATACGCGTTTTACCGTCag > 1:5480435/1‑36 (MQ=255)
aCTTGGTTGCCGCCGTGAGACGCGTTTTACCGTCag > 1:7735432/1‑36 (MQ=255)
cTTGGTTGCCGCCGTGATACGCGTTTTACCGTCaga < 1:4359434/36‑1 (MQ=255)
ttGGTTGCCGCCGTGATACGCGTTTTACCGTCagag > 1:4005700/1‑36 (MQ=255)
ttGGTTGCCGCCGTGAGACGCGTTTTACCGTCagag > 1:7305937/1‑36 (MQ=255)
tGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAgg > 1:5367908/1‑36 (MQ=255)
gTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt > 1:5414703/1‑36 (MQ=255)
gTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt < 1:1425870/36‑1 (MQ=255)
gTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt > 1:4438729/1‑36 (MQ=255)
gTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt < 1:1913083/36‑1 (MQ=255)
gTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt < 1:6387512/36‑1 (MQ=255)
ttGCCGCCGTGATACGCGTTTTACCGTCAGAGGCtt < 1:1206725/36‑1 (MQ=255)
ttGCCGCCGTGATACGCGTTTTACCGTCAGAGGCtt < 1:4658298/36‑1 (MQ=255)
tGCCGCCGTGATACGCGTTTTACCGTCAGAGGCttt > 1:7606990/1‑36 (MQ=255)
cgccgTGATACGCGTTTTACCGTCAGAGGCTTTATg < 1:137616/36‑1 (MQ=255)
cgccgTGATACGCGTTTTACCGTCAGAGGCTTTATg < 1:6023592/36‑1 (MQ=255)
cgccgTGATACGCGTTTTACCGTCAGAGGCTTTATg < 1:6515906/36‑1 (MQ=255)
cgccgTGATACGCGTTTTACCGTCAGAGGCTTTATg < 1:5462871/36‑1 (MQ=255)
cgccgTGAGACGCGTTTTACCGTCAGAGGCTTTATg < 1:4639382/36‑1 (MQ=255)
gccgTGATACGCGTTTTACCGTCAGAGGCTTTATGc > 1:7035556/1‑36 (MQ=255)
gccgTGATACGCGTTTTACCGTCAGAGGCTTTATGc < 1:6893443/36‑1 (MQ=255)
gccgTGATACGCGTTTTACCGTCAGAGGCTTTATGc < 1:3279675/36‑1 (MQ=255)
gccgTGATACGCGTTTTACCGTCAGAGGCTTTATGc > 1:5340869/1‑36 (MQ=255)
gccgTGAGACGCGTTTTACCGTCAGAGGCTTTATGc < 1:1558973/36‑1 (MQ=255)
gccgTGAGACGCGTTTTACCGTCAGAGGCTTTATGc > 1:39429/1‑36 (MQ=255)
ccgTGATACGCGTTTTACCGTCAGAGGCTTTATGcc > 1:3551874/1‑36 (MQ=255)
cgTGATACGCGTTTTACCGTCAGAGGCTTTATGccc > 1:729279/1‑36 (MQ=255)
cgTGAGACGCGTTTTACCGTCAGAGGCTTTATGccc < 1:3896485/36‑1 (MQ=255)
gTGATACGCGTTTTACCGTCAGAGGCTTTATGcccc < 1:4862537/36‑1 (MQ=255)
gTGATACGCGTTTTACCGTCAGAGGCTTTATGcccc < 1:5264206/36‑1 (MQ=255)
tGATACGCGTTTTACCGTCAGAGGCTTTATGccccc > 1:3393655/1‑36 (MQ=255)
gATACGCGTTTTACCGTCAGAGGCTTTATGCCCCca < 1:1485470/36‑1 (MQ=255)
gATACGCGTTTTACCGTCAGAGGCTTTATGCCCCca > 1:5092667/1‑36 (MQ=255)
gATACGCGTTTTACCGTCAGAGGCTTTATGCCCCca > 1:548725/1‑36 (MQ=255)
tACGCGTTTTACCGTCAGAGGCTTTATGCCCCcaca < 1:2023370/36‑1 (MQ=255)
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CTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACA > REL606/2336029‑2336099
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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