Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 52 [2] | [1] 42 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 36 (0.680) | 26/64 | NT | 97.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 1 (0.020) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG.................................. > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG > REL606/3901931‑3901965
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:4511524/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:5941901/1‑36 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:2502327/36‑1 (MQ=1)
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:415321/36‑1 (MQ=1)
TTTAACTGTCCAACTTTTTGGGGTCAGTACATGTTG > 1:4306690/1‑36 (MQ=38)
TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG < 1:3296812/36‑1 (MQ=1)
TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG > 1:7273294/1‑36 (MQ=1)
TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC > 1:6106442/1‑36 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:55872/1‑36 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC < 1:636296/36‑1 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC < 1:3356077/36‑1 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:1668192/1‑36 (MQ=1)
CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 1:1606942/36‑1 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG > 1:2628626/1‑36 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG > 1:1605999/1‑36 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG < 1:1390497/36‑1 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG < 1:4993825/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT > 1:4396828/1‑36 (MQ=32)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT > 1:5756695/1‑36 (MQ=32)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:6739700/36‑1 (MQ=35)
CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 1:2479516/1‑36 (MQ=38)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 1:1571106/36‑1 (MQ=38)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:1894995/36‑1 (MQ=38)
TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:1674917/1‑36 (MQ=38)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:1074735/36‑1 (MQ=38)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 1:5467170/36‑1 (MQ=38)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG > 1:4436011/1‑36 (MQ=38)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG > 1:1219124/1‑36 (MQ=38)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:6077468/36‑1 (MQ=38)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:7169086/36‑1 (MQ=38)
TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA > 1:3528745/1‑36 (MQ=38)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:4592622/1‑36 (MQ=38)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:4504166/1‑36 (MQ=38)
AGTACATGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:6438483/36‑1 (MQ=255)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG > 1:5726451/1‑36 (MQ=38)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:5785792/36‑1 (MQ=38)
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG.................................. > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG > REL606/3901931‑3901965
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|