New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)60 (1.030) 36/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 109 total aligned reads displayed.

GGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGT  >  REL606/241656‑241726
                                   |                                   
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:2406975‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:2587728‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:2661843‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:3506575‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:3515466‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:4901632‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     <  1:6600577‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:5337818‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacag                                     >  1:636579‑M1/36‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:3570454‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:3289564‑M1/35‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagt                                    >  1:7927751‑M1/35‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacagta                                   >  1:2310664‑M1/34‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacagttg                                  >  1:4034087‑M1/33‑34 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacagttg                                  >  1:2149401‑M1/33‑34 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacagagc                                  <  1:7742014‑M1/4‑4 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacagagc                                  <  1:2361072‑M1/4‑4 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:7656634‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGTAt                                  >  1:7084421‑M1/33‑36 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaGTATGa                                >  1:881305‑M1/31‑36 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGTATGAc                               >  1:4698511‑M1/30‑36 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGTATGAc                               >  1:3996109‑M1/30‑36 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaGTATGACa                              <  1:7530457‑M1/8‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGTATGACAg                             <  1:497472‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGTATGACAg                             <  1:4488874‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGTATGACAg                             <  1:421369‑M1/9‑1 (MQ=255)
          cgtccaacaaaatgggtgcagtacaGTATGACAGtc                           <  1:572667‑M1/11‑1 (MQ=255)
          cgtccaacaaaatgggtgcagtacaGTATGACAGtc                           >  1:2706108‑M1/26‑36 (MQ=255)
          cgtccaacaaaatgggtgcagtacaGTATGACAGtc                           >  1:3618417‑M1/26‑36 (MQ=255)
           gtccaacaaaatgggtgcagtacaGTATGACAGtct                          <  1:3846541‑M1/12‑1 (MQ=255)
             ccaacaaaatgggtgcagtacaGTATGACAGTCTcc                        >  1:5386384‑M1/23‑36 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTCCGGa                     >  1:386620‑M1/20‑36 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTCCGGa                     >  1:8039210‑M1/20‑36 (MQ=255)
                acaaaatgggtgcagtacaGTATGACAGTCTCCGGa                     <  1:7913367‑M1/17‑1 (MQ=255)
                 caaaatgggtgcagtacaGTATGACAGTCTCCCGaa                    <  1:2164885‑M1/18‑1 (MQ=255)
                  aaaatgggtgcagtacaGTATGACAGTCTCCGGAAg                   <  1:6907313‑M1/19‑1 (MQ=255)
                  aaaatgggtgcagtacaGTATGACAGTCTCCGGAAg                   <  1:8407549‑M1/19‑1 (MQ=255)
                  aaaatgggtgaagtacaGTATGACAGTCTCCGGAAg                   >  1:8286212‑M1/18‑36 (MQ=255)
                   aaatgggtgcagtacaGTATGACAGTCTCCGGAAGa                  <  1:6385251‑M1/20‑1 (MQ=255)
                   aaatgggtgcagtacaGTATGACAGTCTCCGGAAGa                  <  1:1581075‑M1/20‑1 (MQ=255)
                    aatgggtgcagtacaGTATGACAGTCTCCGGAAGAc                 >  1:7753436‑M1/16‑36 (MQ=255)
                     atgggtgcagtacaGTATGACAGTCTCCGGAAGACg                <  1:579000‑M1/22‑1 (MQ=255)
                      tgggtgcagtacaGTATGACAGTCTCCGGAAGACgg               >  1:2167232‑M1/14‑36 (MQ=255)
                      tgggtgcagtacaGTATGACAGTCTCCGGAAGACgg               >  1:7470950‑M1/14‑36 (MQ=255)
                       gggtgcagtacaGTATTACAGTCTCCGGAAGACGgt              <  1:1526989‑M1/24‑1 (MQ=255)
                       gggtgcagtacaGTATGACAGTCTCCGGAAGACGgt              >  1:429753‑M1/13‑36 (MQ=255)
                       gggtgcagtacaGTATGACAGTCTCCGGAAGACGgt              >  1:2258054‑M1/13‑36 (MQ=255)
                         gtgcagtacaGTATGACAGTCTCCGGAAGACGgttg            >  1:6433966‑M1/11‑36 (MQ=255)
                         gtgcagtacaGTATGACAGTCTCCGGAAGACGgttg            >  1:7373221‑M1/11‑36 (MQ=255)
                          tgcagtacaGTATGACAGTCTCCGGAAGACGgttgt           >  1:1411534‑M1/10‑36 (MQ=255)
                          tgcagtacaGTATGACAGTCTCCGGAAGACGgttgt           >  1:3625632‑M1/10‑36 (MQ=255)
                          tgcagtacaGTATGACAGTCTCCGGAAGACGgttgt           >  1:501872‑M1/10‑36 (MQ=255)
                            cagtacaGTATGACAGTCTCCGGAAGACGGttgttg         <  1:3436754‑M1/29‑1 (MQ=255)
                            cagtacaGTATGACAGTCTCCGGAAGACGGttgttg         >  1:3171820‑M1/8‑36 (MQ=255)
                              gtacaGTATGACAGTCTCCGGAAGACGGTTGTTgcg       >  1:2068081‑M1/6‑36 (MQ=255)
                              gtacaGTATGACAGTCTCCGGAAGACGGTTGTTgcg       <  1:4400301‑M1/31‑1 (MQ=255)
                              gtacaGTATGACAGTCTCCGGAAGACGGTTGTTgcg       <  1:3912038‑M1/31‑1 (MQ=255)
                              gtacaGTATGACAGTCTCCGGAAGACGGTTGTTgcg       <  1:3221963‑M1/31‑1 (MQ=255)
                               taccGTATGACAGTCTCCGGAAGACGGTTGTTgcgc      >  1:8438010‑M1/5‑36 (MQ=255)
                               acgaGTATGACAGTCTCCGGAAGACGGTTGTTgcgc      <  1:4940494‑M1/32‑1 (MQ=255)
                                acaGTATGACAGTCTCCGGAAGACGGTTGTTGCGCa     >  1:1973492‑M1/4‑36 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    <  1:8463903‑M1/34‑1 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    <  1:563147‑M1/34‑1 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    >  1:6158473‑M1/3‑36 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    <  1:1215124‑M1/34‑1 (MQ=255)
                                 caGTATGACAGTCTCCGGAAGACGGTTGTTGCGCAc    >  1:2285436‑M1/3‑36 (MQ=255)
                                  aGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACg   <  1:7251152‑M1/35‑1 (MQ=255)
                                  aGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACg   >  1:4092073‑M1/2‑36 (MQ=255)
                                  aGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACg   <  1:2630816‑M1/35‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:7002939‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:7154345‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:7262856‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:6463433‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:8178756‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:1150113‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1182463‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1520618‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1680781‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:1862063‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:193081‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:2454621‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:2784625‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:3313116‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:3617808‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:3644322‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:3669709‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:3893075‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:4230446‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4239302‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4333217‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4600664‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:4655683‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4753961‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4757582‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:4922698‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:5175010‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:5815036‑M1/36‑1 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:5873949‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  >  1:5987136‑M1/1‑36 (MQ=255)
                                   GTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGt  <  1:613666‑M1/36‑1 (MQ=255)
                                   |                                   
GGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGT  >  REL606/241656‑241726

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG