Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,122,700 | 0 | T→C | 8.3% | 0.9 ‑5.8 0.0 | 90 | 811 | mdoC | glucans biosynthesis protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/9): ref base (42/39): total (42/48) | ||||||||||
Fisher's exact test strand distribution p-value = 3.01e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GAGGACCATGGTGATCACCGACTCGGTTTCGTACATCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGTA > REL606/1122665‑1122735
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gAGGACCATGGTGATCACCGACTCGGTTTCGTACAt < 1:6764546/36‑1 (MQ=255)
gAGGACCATGGTGATCACCGACTCGGTTTCGTACAt > 1:1283955/1‑36 (MQ=255)
gAGGACCATGGTGATCACCGACTCGGTTTCGTACAt > 1:303547/1‑36 (MQ=255)
gAGGACCATGGTGATCACCGACTCGGTTTCGTACAt > 1:7476567/1‑36 (MQ=255)
gAGGACCATGGTGATCACCGACTCGGTTTCGTACAt > 1:2871568/1‑36 (MQ=255)
aGGACCATGGTGATCACCGACTCGGTTTCGTACATc < 1:220502/36‑1 (MQ=255)
aGGACCATGGTGATCACCGACTCGGTTTCGTACATc > 1:1404674/1‑36 (MQ=255)
aGGACCATGGTGATCACCGACTCGGTTTCGTACATc > 1:3674015/1‑36 (MQ=255)
aGGACCATGGTGATCACCGACTCGGTTTCGTACATc < 1:1634222/36‑1 (MQ=255)
aGGACAACGGTGTTCGCCGACTCGGTTTCGTACATc < 1:2297601/36‑1 (MQ=16)
ggACCATGGTGATCACCGACTCGGTTTCGTACATcc < 1:6634503/36‑1 (MQ=255)
ggACCATGGTGATCACCGACTCGGTTTCGTACATcc > 1:2378873/1‑36 (MQ=255)
ggACCATGGTGATCACCGACTCGGTTTCGTACATcc < 1:2020317/36‑1 (MQ=255)
gACCATGGTGATCACCGACTCGGTTTCGTACATCCa < 1:6589348/36‑1 (MQ=255)
aCCATGGTGATCCCCGACTCGGTTTCGTACATCCAg < 1:1238524/36‑1 (MQ=255)
aCCATGGTGATCACCGACTCGGTTTCGTACATCCAg > 1:5891284/1‑36 (MQ=255)
aCCATGGTGATCACCGACTCGGTTTCGTACATCCAg < 1:1151885/36‑1 (MQ=255)
ccATGGTGATCGCCGACTCGGTTTCGTACATCCAgg < 1:2834738/36‑1 (MQ=255)
ccATGGTGATCACCGACTCGGTTTCGTACATCCAgg < 1:6196117/36‑1 (MQ=255)
cATGGTGATCACCGACTCGGTTTCGTACATCCAGGc > 1:4334724/1‑36 (MQ=255)
aTGGTGATCACCGACTCGGTTTCGTACATCCAGGCa > 1:7325442/1‑36 (MQ=255)
aTGGTGATCACCGACTCGGTTTCGTACATCCAGGCa > 1:354143/1‑36 (MQ=255)
aTGGTGATCACCGACTCGGTTTCGTACATCCAGGCa > 1:5816958/1‑36 (MQ=255)
tGGTGATCACCGACTCGGTTTCGTACATCCAGGCAt < 1:5819573/36‑1 (MQ=255)
gTGATCACCGACTCGGTTTCGTACATCCAGGCATCg < 1:241511/36‑1 (MQ=255)
gTGATCACCGACTCGGTTTCGTACATCCAGGCATCg > 1:5346573/1‑36 (MQ=255)
tGATCACCGACTCGGTTTCGTACATCCAGGCATCGc > 1:4891935/1‑36 (MQ=255)
tGATCACCGACTCGGTTTCGTACATCCAGGCATCGc > 1:320077/1‑36 (MQ=255)
gATCGCCGACTCGGTTTCGTGCATCCAGGCATCGcc < 1:6715502/36‑1 (MQ=37)
gATCACCGACTCGGTTTCGTACATCCAGGCATCGcc > 1:7389853/1‑36 (MQ=255)
tCACCGACTCGGTTTCGTACATCCAGGCATCGCCAc < 1:6931039/36‑1 (MQ=255)
tCACCGACTCGGTTTCGTACATCCAGGCATCGCCAc < 1:7177083/36‑1 (MQ=255)
tCACCGACTCGGTTTCGTACATCCAGGCATCGCCAc > 1:1248702/1‑36 (MQ=255)
tCACCGACTCGGTTTCGTACATCCAGGCATCGCCAc > 1:4667323/1‑36 (MQ=255)
ccccGACTCGGTTTCGTACACCCAGGCATCGCCACt < 1:4040831/34‑1 (MQ=38)
cACCGACTCGGTTTCGTACATCCAGGCATCGCCACt > 1:5636904/1‑36 (MQ=255)
cACCGACTCGGTTTCGTACATCCAGGCATCGCCACt > 1:4176020/1‑36 (MQ=255)
aCCGACTCGGTTTCGTACATCCATGCATCCTCACTg > 1:3825495/1‑36 (MQ=25)
aCCGACTCGGTTTCGTACATCCAGGCATCGCCACTg > 1:344460/1‑36 (MQ=255)
aCCGACTCGGTTTCGTACATCCAGGCATCGCCACTg > 1:7461146/1‑36 (MQ=255)
aCCGACTCGGTTTCGTACATCCAGGCATCGCCACTg > 1:4438816/1‑36 (MQ=255)
ccGACTCGGTTTCGTACATCCAGGCATCGCCACTGc > 1:3691865/1‑36 (MQ=255)
ccGACTCGGTTTCGTACATCCAGGCATCGCCACTGc < 1:1132818/36‑1 (MQ=255)
cGACTCGGTTTCGTACATCCAGGCATCGCCACTGcc < 1:6314972/36‑1 (MQ=255)
cGACTCGGTTTCGTACATCCAGGCATCGCCACTGcc > 1:4024992/1‑36 (MQ=255)
cGACTCGGTTTCGTACATCCAGGCATCGCCACTGcc < 1:4227756/36‑1 (MQ=255)
cGACTCGGTTTCGTACATCCAGGCATCGCCACTGcc < 1:919162/36‑1 (MQ=255)
cGACTCGGTTTCGTACATCCAGGCATCGCCACTGcc < 1:1391227/36‑1 (MQ=255)
gACTCGGTTTCGTACATCCAGGCATCGCCACTGCCa > 1:2722797/1‑36 (MQ=255)
gACTCGGTTTCGTACATCCAGGCATCGCCACTGCCa < 1:6495459/36‑1 (MQ=255)
gACTCGGTTTCGTACATCCAGGCATCGCCACTGCCa > 1:1846663/1‑36 (MQ=255)
aCTCGGTTTCGTACATCCAGGCATCGCCACTGCCAt < 1:93021/36‑1 (MQ=255)
cccGGTTCCGAAAACCCAGTCACCGCCACTGCCATa < 1:5612976/34‑1 (MQ=2)
tCGGTTTCGTACATCCAGGCATCGCCACTGCCATAg > 1:6422462/1‑36 (MQ=255)
tCGGTTTCGTACATCCAGGCATCGCCACTGCCATAg > 1:3678683/1‑36 (MQ=255)
tCGGTTTCGTACATCAAGGCATCGCCACTGCCATAg < 1:5950480/36‑1 (MQ=255)
cGGTTTCGTACATACAGCAATCCCCACTGCCATAgc < 1:6337349/36‑1 (MQ=19)
ggTTTCGTACATCCAGGCATCGCCACTGCCATAgcg < 1:685385/36‑1 (MQ=255)
ggTTTCGTACACCCAGGCATCGCCACTGCCATAgcg < 1:2477775/36‑1 (MQ=255)
gTTTCGTACATCCAGGCATCGCCACTGCCATAgcgc > 1:441074/1‑36 (MQ=255)
gTTTCGTACATCCAGGCATCGCCACTGCCATAgcgc > 1:6322699/1‑36 (MQ=255)
tttCGTACATCCAGGCATCGCCACTGCCATAGCGCt < 1:3499832/36‑1 (MQ=255)
tttCGTACACCCAGGAATCGCCACTGCCATAGCGCt < 1:5407420/36‑1 (MQ=37)
ttCGTACATCCAGGCATCGCCACTGCCATAGCGCTg > 1:1648375/1‑36 (MQ=255)
ttCGTACATCAAGGCATCGCCACTGCCATAGCGCTg < 1:7055521/36‑1 (MQ=255)
ttCGTACACCCAGGCATCGCCACTGCCATAGCGCTg < 1:4426743/36‑1 (MQ=255)
ttCGAACACCCAGGCATCTCCACTGCCATAGCGCTg < 1:5160956/36‑1 (MQ=25)
tCGTACATCCAGGCATCGCCACTGCCATAGCGCTgg > 1:6882321/1‑36 (MQ=255)
tCGTACATCCAGGCATCGCCACTGCCATAGCGCTgg > 1:5940183/1‑36 (MQ=255)
tCGTACATCCAGGCATCGCCACTGCCATAGCGCTgg > 1:2024485/1‑36 (MQ=255)
tCGTACATCCAGGCATCGCCACTGCCATAGCGCTgg < 1:7503496/36‑1 (MQ=255)
tCGTACATCCAGGCATCGCCACTGCCATAGCGCTgg > 1:3926450/1‑36 (MQ=255)
cGTACATCCAGGCATCGCCACTGCCCTAGCGCTGGt > 1:4587930/1‑36 (MQ=255)
cGTACATCCAGGCATCGCCACTGCCATAGCGCTGGt > 1:2616151/1‑36 (MQ=255)
cGTACATCCAGGCATCGCCACTGCCATAGCGCTGGt < 1:1392442/36‑1 (MQ=255)
cGTACATCCAGGCATCGACACTGCCATAGAGCTGGt > 1:1462644/1‑36 (MQ=38)
cGTAAATCCAGGCATCGCCACTGCCATAGCGCTGGt < 1:4374221/36‑1 (MQ=255)
gTACATCCAGTCATCGCCACTGCCATAGCGCTGGtt < 1:6376093/36‑1 (MQ=255)
gTACATCCAGGCATCGCCACTGCCATAGCGCTGGtt > 1:7241382/1‑36 (MQ=255)
gTACATCCAGGCATCGCCACTGCCATAGCGCTGGtt > 1:2698362/1‑36 (MQ=255)
gTACATCCAGGCATCGCCACTGCCATAGCGCTGGtt < 1:218300/36‑1 (MQ=255)
gTACATCCAGGCATCGCCACTGCCATAGCGCTGGtt > 1:3071627/1‑36 (MQ=255)
gTACATCCAGGAATCGCCACTGCCATAGCGCTGGtt < 1:911226/36‑1 (MQ=255)
gTACACCCAGGCATCGCCACTGCCATAGCGCTGGtt < 1:5602064/36‑1 (MQ=255)
tACATCCAGGCATCGCCACTGCCATAGCGCTGGTTg < 1:6739698/36‑1 (MQ=255)
tACACCCAGGCATCGCCACTGCCATAGCGCTGGTTg < 1:1231362/36‑1 (MQ=255)
aCATCCAGTAATTGCCTCTGCCATCGCGCTGGTTGa < 1:4254422/36‑1 (MQ=16)
aCATCCAGGCATCGCCACTGCCATAGCGCTGGTTGa > 1:145819/1‑36 (MQ=255)
aCACCCAGGCATCGCCACTGCCATAGCGCTGGTTGa < 1:1591040/36‑1 (MQ=255)
aTCCGGGCATCGCAACTGCCATAGCGCTGGTTGAGt < 1:7379434/36‑1 (MQ=37)
aTCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGt > 1:1768515/1‑36 (MQ=255)
aTCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGt < 1:1829907/36‑1 (MQ=255)
aTCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGt < 1:4843911/36‑1 (MQ=255)
aTCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGt > 1:2495698/1‑36 (MQ=255)
aTCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGt < 1:3648535/36‑1 (MQ=255)
tCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGTa > 1:6822823/1‑36 (MQ=255)
tCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGTa > 1:3388707/1‑36 (MQ=255)
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GAGGACCATGGTGATCACCGACTCGGTTTCGTACATCCAGGCATCGCCACTGCCATAGCGCTGGTTGAGTA > REL606/1122665‑1122735
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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