Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,478,544 | G→T | 19.1% | Q43K (CAA→AAA) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,478,544 | 0 | G→T | 19.1% | 2.9 ‑3.1 0.0 | 36 | 127 | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
Reads supporting (aligned to +/- strand): new base (7/1): ref base (12/16): total (19/17) | ||||||||||
Fisher's exact test strand distribution p-value = 4.38e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGG > REL606/3478515‑3478579
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cGTTACCGCCACTTTCGTGGCGGTACGTTGCTGcct > 1:7499048/1‑34 (MQ=38)
aCCGCCACTTTCGTGCCGGTACGTTGACGCATcgcg > 1:844336/1‑36 (MQ=38)
cGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTc < 1:2998008/36‑1 (MQ=255)
cGCCACTTTCGTGGCGGGACCTTTATGTATTGCGTc > 1:5222183/1‑36 (MQ=16)
ccACTTTCGTGGCGGTACGTTTATTCATTGCGTCaa > 1:1676182/1‑36 (MQ=25)
ccACTTTCGTGGCGGTACGTTTATTCATCGCGTCaa > 1:5147307/1‑36 (MQ=37)
cACTTTCGTGGCGGTACGTTTATGCATCGCGTCAAg > 1:1819185/1‑36 (MQ=255)
cACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAg < 1:5715699/36‑1 (MQ=255)
aCTTTCGTGGCGGTACTTTTATGCATTGCGTCAAGc > 1:6998998/1‑36 (MQ=25)
aCTTGCGTGGCGGTACGTTGATGCATCGCGTCAAGc < 1:4312104/36‑1 (MQ=255)
ttCGTGGCGGTACGTTTATGCATCTCGTCAAGCaaa > 1:246898/1‑36 (MQ=37)
ttCGTGGCGGTACGTTTATGCATCGCTTCAAGCaaa < 1:1812457/36‑1 (MQ=37)
tGGCGGTATGTTGATGCATCGCGTCAAGCAAACGcc < 1:7167133/36‑1 (MQ=255)
tGGCGGTACGTTTATTCATCGCGTCAAGCCAACGcc > 1:4269612/1‑36 (MQ=25)
ggCGGTACGTTGATGAATCGCGTCAAGCAAACGCCg > 1:7065008/1‑36 (MQ=255)
cGGTACGTTGATGCATCGCGTCAAGCAAACGCCGtt > 1:4648379/1‑36 (MQ=255)
ggTACGTTGATGCATCGCGTCAAGCAAACGCCGttt > 1:1288636/1‑36 (MQ=255)
ggTACGTTGATGCATCGCGTCAAGCAAACGCCGttt < 1:6605010/36‑1 (MQ=255)
ggTACGTTGATGCATCGCGTCAAGCAAACGCCGttt < 1:3119456/36‑1 (MQ=255)
ggTACGTTGATGCATCGCGTCAAGCAAACGCCGttt < 1:6142513/36‑1 (MQ=255)
gTACGTTGATGCATCTCATCACGCAAACGCCTTTTg < 1:4756849/36‑1 (MQ=16)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg < 1:4579587/36‑1 (MQ=255)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg < 1:186235/36‑1 (MQ=255)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg < 1:1436792/36‑1 (MQ=255)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg > 1:2010202/1‑36 (MQ=255)
tACGTTGATGCATCGCGTCAAGCAAACGCCGTTTgg < 1:463603/36‑1 (MQ=255)
tACGTTGATGCATCGCGTCAAGCAAACGCCGTTTgg > 1:1660232/1‑36 (MQ=255)
aCGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGt > 1:6703426/1‑36 (MQ=255)
cGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGtt < 1:1190002/36‑1 (MQ=255)
cGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGtt > 1:1021671/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt < 1:3879919/36‑1 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt < 1:6128312/36‑1 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt > 1:3629278/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt > 1:2878065/1‑36 (MQ=255)
ttGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTc < 1:2371965/36‑1 (MQ=255)
tGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCg > 1:5140085/1‑36 (MQ=255)
gATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCgg > 1:5214178/1‑36 (MQ=255)
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CGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGG > REL606/3478515‑3478579
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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