Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,398,6110G→T100.0% 0.2 4624tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (2/0):  total (4/0)

AATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTT  >  REL606/3398579‑3398630
                                |                   
aaTACGTCTTCGATCGGCAGCAGGAACGGGTTTTcc                  >  1:3800250/1‑35 (MQ=1)
 aTACGTCTTCGATCGGCAGCAGGAACGGCTTTTcta                 >  1:4777857/1‑34 (MQ=1)
              cGGCAGCAGGAACGGCTTGGCAATAGAACCCCCTgg    >  1:705181/1‑36 (MQ=0)
                gcagcaGGAACGGCTTGTCAATAGCACCATCTTGtt  >  1:7276498/1‑36 (MQ=0)
                                |                   
AATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTT  >  REL606/3398579‑3398630

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 37 ≤  ATCG