Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,004,251 T→C 100% intergenic (‑177/+425) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,004,2510T→C100.0% 62.7 19intergenic (‑177/+425)ompF/asnSouter membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase
Reads supporting (aligned to +/- strand):  new base (7/12):  ref base (0/0):  total (7/12)

TACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAAAGTAAA  >  REL606/1004218‑1004283
                                 |                                
tACCGTGAAAGTGCTACAAAGATAAAGATTTGGctt                                >  1:4595836/1‑36 (MQ=255)
 aCCGTGAAAGTGCTTCAAAGATAAAGATTTGGCTTc                               <  1:71300/36‑1 (MQ=37)
 aCCGTGAAAGTGCTACAAAGATAAAGATTTGGCTTc                               <  1:4165720/36‑1 (MQ=255)
  ccGTGAAAGTGCTACAAATATAAAGATTTGGCTTCa                              <  1:5068402/36‑1 (MQ=25)
       aaaGTGCTACAAAGATAAAGATTTGGCTTCAAAAAg                         <  1:2740375/36‑1 (MQ=255)
       aaaGTGCTACAAAGATAAAGATTTGGCTTCAAAAAg                         <  1:3399266/36‑1 (MQ=255)
        aaGTGCTACAAAGATAAAGATTTGGCTTCAAAAAGa                        <  1:1779876/36‑1 (MQ=255)
         aGTGCTACAAAGATAAAGCTTTGGCTTCAAAAAGaa                       <  1:3841739/36‑1 (MQ=38)
         aGTGCTACAAAGATAAAGATTTGGCTTCAAAAAGaa                       <  1:2202105/36‑1 (MQ=255)
            gCTACAAAGATAAAGATTTGGCTTCAAAAAGaaaaa                    >  1:3788398/1‑36 (MQ=255)
             cTACAAAGATAAAGATTTGGCTTCAAAAAGAAAAat                   >  1:4725414/1‑36 (MQ=255)
              tACAAAGATAAAGATTTGGCTTCAAAAAGAAAAata                  <  1:3755270/36‑1 (MQ=255)
                 aaagataaagatTTGGCTTCAAAAAGAAAAATATGt               <  1:5649925/36‑1 (MQ=255)
                   agataaagatTTGGCTTCAAAAAGAAAAATATGTaa             <  1:2862072/36‑1 (MQ=255)
                     ataaagatTTGGCTTCAAAAAGAAAAATATGTAAcc           >  1:5801332/1‑36 (MQ=255)
                           atTTGGCTTAAAAAAGAAAAATATGTAACCAAAAGt     <  1:4824728/36‑1 (MQ=37)
                            tttGGCTTCAAAAAGAAAAATATGTAACCAAAAGTa    >  1:3879298/1‑36 (MQ=255)
                            tttGGCTTCAAAAAGAAAAATATGTAACCAAAAGTa    >  1:5941953/1‑36 (MQ=255)
                             ttGGCTTCAAAAAGAAAAATATGTAACCAAAAGTaa   >  1:4855168/1‑36 (MQ=255)
                              tGGCTTCAAAAAGAAAAATATGAAACCAAAAGTaaa  >  1:1365035/1‑36 (MQ=37)
                                 |                                
TACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAAAGTAAA  >  REL606/1004218‑1004283

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG