New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)9 (0.160) 9/64 NT 17.3% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 43 (0.710)coding (573/1041 nt) ynjI predicted inner membrane protein

TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562
                                   |                                   
tcctccATGTTTGCTTTAAAGGTATTGGCTCCATGG                                     <  1:4357457‑M2/36‑1 (MQ=255)
 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    >  1:1121642‑M2/1‑35 (MQ=255)
 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    <  1:2430691‑M2/36‑2 (MQ=255)
 cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    <  1:7464069‑M2/36‑2 (MQ=255)
  ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGTc                                   >  1:2916947/1‑36 (MQ=255)
  ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGTc                                   <  1:2496252/36‑1 (MQ=255)
   tccATGTTTGCTTTAAAGGTATTGGCTCCATGGTCg                                  <  1:198529/36‑1 (MQ=255)
     cATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGcc                                <  1:2720425/36‑1 (MQ=255)
      aTGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCa                               <  1:7536954/36‑1 (MQ=255)
       tGTTTGCTTTAAAGGTATTGGCTCCATGGtgtactg                              <  1:7136026‑M2/36‑8 (MQ=255)
       tGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCag                              >  1:4913540/1‑36 (MQ=255)
       tGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCag                              >  1:793019/1‑36 (MQ=255)
        gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                             >  1:1714812‑M2/1‑28 (MQ=255)
        gTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCaga                             >  1:2881157/1‑36 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGTCGCCagaa                            >  1:4951797/1‑36 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGTCGCCagaa                            <  1:1878255/36‑1 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGTCGCCagaa                            >  1:2193108/1‑36 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGTCGCCagaa                            <  1:2368914/36‑1 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGTCGCCagaaa                           >  1:853825/1‑36 (MQ=255)
           tGCTTTAAAGGTATTGGCTCCATGGTCGCCagaaag                          >  1:4550875/1‑36 (MQ=255)
            gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                         >  1:998689‑M2/1‑24 (MQ=255)
            gCTTTAAAGGTATTGGCTCCATGGTCGCCagaaaga                         <  1:3459817/36‑1 (MQ=255)
             cTTTAAAGGTATTGGCTCCATGGTCGCCagaaagaa                        >  1:1954284/1‑36 (MQ=255)
              tttAAAGGTATTGGCTCCATGGTCGCCAgaaagaaa                       <  1:7613932/36‑1 (MQ=255)
                tAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAAt                     >  1:5687326/1‑36 (MQ=255)
                 aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                    >  1:7079274‑M2/1‑19 (MQ=255)
                 aaaGGTATTGGCTCCATGGTCGCCAGAAAGAAAATg                    >  1:6700608/1‑36 (MQ=255)
                 aaaGGTATTGGCTCCATGGTCGCCAGAAAGAAAATg                    >  1:5569521/1‑36 (MQ=255)
                  aaGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGc                   >  1:4917517/1‑36 (MQ=255)
                  aaGGTATTGGCTCCATAGTCGCCAGAAAGAAAATGc                   >  1:1899352/1‑36 (MQ=255)
                  aaGGTATTGGCCCCATGGTCGCCAGAAAGAAAATGc                   <  1:4436561/36‑1 (MQ=255)
                   aGGTATTGGCTCCATGGtgtactgaccccaaaaagt                  >  1:736943‑M2/1‑17 (MQ=255)
                   aGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCt                  >  1:3735676/1‑36 (MQ=255)
                    ggTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTc                 >  1:3606175/1‑36 (MQ=255)
                    ggTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTc                 >  1:5341228/1‑36 (MQ=255)
                     gTATTGGCTCCATTGtgtactgaccccaaaaagttg                <  1:6076414‑M2/36‑22 (MQ=255)
                     gTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTcc                >  1:1142292/1‑36 (MQ=255)
                       aTTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCAt              >  1:7789937/1‑36 (MQ=255)
                        ttGGCTCCATGGTCGCCAGAAAGAAAATGCTCCAtt             <  1:6222315/36‑1 (MQ=255)
                         tGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTa            <  1:871255/36‑1 (MQ=255)
                         tGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTa            >  1:7225765/1‑36 (MQ=255)
                         tGGCTCCATGGTCGACAGAAAGAAAATGCTCCATTa            <  1:1394709/36‑1 (MQ=255)
                          ggCTCCATGGTCGCCAGAAAGAAAATGCTCCATTaa           <  1:2261065/36‑1 (MQ=255)
                          ggCTCCATGGTCGCCAGAAAGAAAATGCTCCATTaa           <  1:193553/36‑1 (MQ=255)
                           gCTCCATGGtgtactgaccccaaaaagttggacagt          <  1:6497576‑M2/36‑28 (MQ=255)
                            cTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAgg         >  1:2916040/1‑36 (MQ=255)
                            cTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAgg         >  1:1887029/1‑36 (MQ=255)
                            cTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAgg         <  1:3390169/36‑1 (MQ=255)
                             tCCATGGtgtactgaccccaaaaagttggacagtta        >  1:2341896‑M2/1‑7 (MQ=255)
                             tCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        >  1:6906650/1‑36 (MQ=255)
                             tCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        >  1:2334717/1‑36 (MQ=255)
                               cATGGtgtactgaccccaaaaagttggacagttaaa      <  1:272023‑M2/36‑32 (MQ=255)
                               cATGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      <  1:393474/36‑1 (MQ=255)
                               cATGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      <  1:2806429/36‑1 (MQ=255)
                                 tGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    <  1:6256983/36‑1 (MQ=255)
                                 gagtgtactgaccccaaaaagttggacagttaaaca    <  1:402899‑M2/34‑34 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   >  1:5186289‑M2/1‑2 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   >  1:1390265‑M2/1‑2 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   <  1:3502545/36‑1 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:3852202/1‑36 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:315792/1‑36 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:4633436‑M2/1‑1 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  >  1:4930326/1‑36 (MQ=255)
                                   |                                   
TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG