New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)46 (1.090) 29/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

CTGGGTACTCAGGTCGAAATCTAACGCCA..G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893522‑3893588
                                   |                                  
cgtgcgcaacaaccgtcttccggagactgtcatact                                    >  1:874412‑M2/36‑36 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCCAG.G.ACTGt                                  <  1:3320652/36‑1 (MQ=37)
 gtgcgcaacaaccgtcttccggggactgtcatactg                                   >  1:4480621‑M2/35‑36 (MQ=255)
 gtgcgcaacaaccgtcttccggagactgtcatactg                                   >  1:3181125‑M2/35‑36 (MQ=255)
 gtgcgcaacaaccgtcttccggagactgtcatactg                                   >  1:2961461‑M2/35‑36 (MQ=255)
 gtgcgcaacaaccgtcttccggagactgtcatactg                                   >  1:5761506‑M2/35‑36 (MQ=255)
  tgcgcaacaaccgtcttccggagactgtcatactgt                                  >  1:1526351‑M2/34‑36 (MQ=255)
  gggTACTCAGGTCGAAATCTAACGCCAG.G.ACTGTAc                                >  1:4095428/1‑36 (MQ=37)
   ggTACTCAGGTCGAAATCTAACGCCAG.G.ACTGTACt                               <  1:1503102/36‑1 (MQ=37)
   gcgcaacaaccgtcttccggagactgtcatactgta                                 <  1:2147557‑M2/4‑1 (MQ=255)
    cgcaacaaccgtcttccggagactgtcatactgtac                                >  1:2615723‑M2/32‑36 (MQ=255)
     gcaacaaccgtcttccggagactgtcatactgtact                               >  1:4158672‑M2/31‑36 (MQ=255)
      caacaaccgtcttccggagactgtcatactgtactg                              >  1:5523885‑M2/30‑36 (MQ=255)
      aCTCAGGGCGAAATCTAACGCCAG.G.ACTGTACTGCa                            >  1:3093069/1‑36 (MQ=25)
       cTCAGGTCGAACTCTAACGCCAG.G.ACTGTACTGCAc                           <  1:1265000/36‑1 (MQ=25)
       aacaaccgtcttccggagactgtcatacTGTACTGc                             <  1:3428365‑M2/8‑1 (MQ=255)
       aacaaccgtcttccggagactgtcatacTGTACTGc                             >  1:907397‑M2/29‑36 (MQ=255)
        tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc                          <  1:4576341/36‑1 (MQ=37)
        tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc                          <  1:3504491/36‑1 (MQ=37)
        tCAGGTCGAAATCTAACGCCAG.G.ACTGTACTGCAcc                          <  1:2311700/36‑1 (MQ=37)
          aaccgtcttccggagactgtcatacTGTACTGCAcc                          >  1:905475‑M2/26‑36 (MQ=255)
          aGGTCGAAATCTAACGCCAG.G.ACTGTACTGCACCCa                        <  1:3520246/36‑1 (MQ=37)
           ggTCGAAGTCTGACGCCA..GTACTGTACTGCACCCAt                       <  1:1114119/36‑1 (MQ=16)
           ggTCGAAATCTAACGCCAG.G.ACTGTACTGCACCCAt                       >  1:667394/1‑36 (MQ=37)
           accgtcttccggagactgtcatacTGTACTGCAccc                         >  1:4159425‑M2/25‑36 (MQ=255)
            ccgtcttccggagactgtcatacTGTACTGCACCCa                        >  1:2609675‑M2/24‑36 (MQ=255)
             tCGAAATCTAACGCCAG.G.ACTGTACTGCACCCAttt                     <  1:5284910/36‑1 (MQ=25)
             cgtcttccggagactgtcatacTGTACTGCACCCAt                       <  1:632496‑M2/14‑1 (MQ=255)
              gtcttccggagactgtcatacTGTACTGCACCCAtt                      <  1:2786238‑M2/15‑1 (MQ=255)
              cGAAATCTAACGCCAGGG.ACTGTACTGCACCCAttt                     >  1:1365924/1‑36 (MQ=18)
              cGAAATCTAACGCCAG.G.ACTGTACTGCACCCAtttt                    >  1:645821/1‑36 (MQ=25)
              cGAAATCTAACGCCAG.G.ACTGTACTGCACCCAtttt                    <  1:299801/36‑1 (MQ=25)
               gAAATCTAACGCCAG.G.ACTGTACTGCACCCATTttg                   >  1:174083/1‑36 (MQ=21)
               gAAATCTAACGCCAG.G.ACTGTACTGCACCCATTttg                   >  1:2173644/1‑36 (MQ=21)
               gAAATCTAACGCCA..GTACTGTACTGCACCCAtttcg                   >  1:715336/1‑34 (MQ=21)
                cttccggagactgtcatacTGTACTGCACCCAtttt                    <  1:4271802‑M2/17‑1 (MQ=255)
                cttccggagactgtcatacTGTACTGCACCCAtttt                    <  1:2568286‑M2/17‑1 (MQ=255)
                  tccgtagactgtcatacTGTACTGCACCCATTttgt                  <  1:86420‑M2/19‑1 (MQ=255)
                  tccggagactgtcatacTGTACTGCACCCATTttgt                  <  1:5000481‑M2/19‑1 (MQ=255)
                  tccggagactgtcatacTGTACTGCACCCATTttgt                  <  1:2080949‑M2/19‑1 (MQ=255)
                  aTCTAACGCCAG.G.ACTGTACTGCACCCATTttgttg                >  1:2770401/1‑36 (MQ=18)
                  aTCTAACGCCAG.G.ACTGTACTGCACCCATTttgttg                >  1:1260686/1‑36 (MQ=18)
                  aTCTAACGCCAG.G.ACTGTACTGCACCCATTtcgtgg                >  1:452704/1‑34 (MQ=18)
                   tttAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg               <  1:4016714/34‑1 (MQ=17)
                   tCTAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg               <  1:2801576/36‑1 (MQ=18)
                   tCTAACGCCAG.G.ACTGTACTGCACCCATTTTGTTgg               >  1:585928/1‑36 (MQ=18)
                   ccggagactgtcatacTGTACTGCACCCATTttgtt                 >  1:1534149‑M2/17‑36 (MQ=255)
                    cggagactgtcatacTGTACTGCACCCATTttgttg                <  1:5628674‑M2/21‑1 (MQ=255)
                    cggagactgtcatacTGTACTGCACCCATTttgttg                <  1:1662107‑M2/21‑1 (MQ=255)
                     tAACGCCAG.G.ACTGTACTGCACCCATTTTGTTGGAc             <  1:5379827/36‑1 (MQ=17)
                     tAACGCCAG.G.ACTGTACTGCACCCATTTTGTTGGAc             <  1:550156/36‑1 (MQ=17)
                     ggagactgtcatacTGTACTGCACCCATTTTGTTgg               >  1:1032580‑M2/15‑36 (MQ=255)
                     ggagactgtcatacTGTACTGCACCCATTTTGTTgg               >  1:1310372‑M2/15‑36 (MQ=255)
                     ggagactgtcatacTGTACTGCACCCATTTTGTTgg               >  1:4035110‑M2/15‑36 (MQ=255)
                       aCGCCAG.G.ACTGTACTGCACCCATTTTGTTGGACGa           >  1:1325916/1‑36 (MQ=14)
                         actgtcatacTGTACTGCACCCATTTTGTTGGACGa           >  1:3540466‑M2/11‑36 (MQ=255)
                         actgtcatacTGTACTGCACCCATTTTGTTGGACGa           >  1:5270115‑M2/11‑36 (MQ=255)
                          ctgtcatacTGTACTGCACCCATTTTGTTGGACGAt          <  1:25488‑M2/27‑1 (MQ=255)
                          acA..G.ACTGTACTGCACCCATTTTGTTGGACGATGaa       >  1:5371539/2‑36 (MQ=255)
                            cagg.ACTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:5579559/33‑1 (MQ=255)
                            cagg.ACTGTACTGCACCCAGTTTGTTGGACGATGaa       >  1:2674172/4‑36 (MQ=11)
                             tcatacTGTACTGCACCCATTTTGTTGTACGATGaa       >  1:5785424‑M2/7‑36 (MQ=255)
                             tcatacTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:2739590‑M2/30‑1 (MQ=255)
                             agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:4949423/3‑36 (MQ=25)
                             agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:4169971/3‑36 (MQ=25)
                             agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:4546478/34‑1 (MQ=25)
                             agg.ACTGAACTGCACCCATTTTGTGTGACGATGaaa      >  1:5520705/3‑36 (MQ=11)
                              gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:339162/35‑1 (MQ=25)
                              gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:337764/2‑36 (MQ=25)
                              catacTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:3651264‑M2/31‑1 (MQ=255)
                              catacTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:2289054‑M2/6‑36 (MQ=255)
                              catacTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:3521634‑M2/31‑1 (MQ=255)
                               g.ACTGTACTGCACCCATTTTGTTGGACGATGAAATg    <  1:5672696/36‑1 (MQ=35)
                               atacTTTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:4889487‑M2/32‑1 (MQ=255)
                               atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:465767‑M2/5‑36 (MQ=255)
                               atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:3944930‑M2/5‑36 (MQ=255)
                               atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:4881937‑M2/5‑36 (MQ=255)
                               atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:253016‑M2/5‑36 (MQ=255)
                               atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:4474779‑M2/32‑1 (MQ=255)
                                tacTGTACTGCACTCATTTTGTTGGACGATGAAATg    <  1:3197188‑M2/33‑1 (MQ=255)
                                tacTGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:256090‑M2/4‑36 (MQ=255)
                                tacTGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:4430843‑M2/4‑36 (MQ=255)
                                tacTGTACTGCACCCATTTTGTTGGACGATGAAATg    <  1:5086396‑M2/33‑1 (MQ=255)
                                 acTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:5202710‑M2/3‑36 (MQ=255)
                                 acTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:3623229‑M2/3‑36 (MQ=255)
                                 acTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:2707943‑M2/3‑36 (MQ=255)
                                 acTGTACTGCACCCATTTTGTTGGACGATGAAATgg   <  1:1245475‑M2/34‑1 (MQ=255)
                                  cTGTACTGCACCCATTTTGTTGTACGATGAAATGGa  <  1:1717948‑M2/35‑1 (MQ=255)
                                  cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:5679851‑M2/35‑1 (MQ=255)
                                  cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:212550‑M2/35‑1 (MQ=255)
                                  cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:4801809‑M2/2‑36 (MQ=255)
                                  cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:874765‑M2/2‑36 (MQ=255)
                                   |                                  
CTGGGTACTCAGGTCGAAATCTAACGCCA..G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893522‑3893588

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG