New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286705 =24 (0.490)7 (0.140) 4/56 NT 21.2% intergenic (+29/‑154) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 2173876 28 (0.460)coding (454/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent

TCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGA  >  REL606/1286670‑1286740
                                   |                                   
tCACTAAGCGAATTTTAGTTCACATAGACCCTGCtt                                     <  1:2059276/36‑1 (MQ=255)
tCACTAAGCGAATTTTAGTTCACATAGACCCTGCtt                                     <  1:6856492/36‑1 (MQ=255)
agtgattggatcatcgtgtataggcgcatcggtcat                                     >  1:4917567‑M1/36‑36 (MQ=255)
agtgattggatcatcgtgtataggcgcatcggtcat                                     >  1:4580573‑M1/36‑36 (MQ=255)
agtgattggatcatcgtgtataggcgcatcggtcat                                     >  1:7477577‑M1/36‑36 (MQ=255)
agtgattggatcatcgtgtataggcgcatcggtcat                                     <  1:3836962‑M1/1‑1 (MQ=255)
 gtgattggatcatcgtgtataggcgcatcggtcaTc                                    >  1:3194634‑M1/35‑36 (MQ=255)
 gtgattggatcatcgtgtataggcgcatcggtcaTc                                    >  1:1846908‑M1/35‑36 (MQ=255)
 gtgattggatcatcgtgtataggcgcatcggtcaTc                                    >  1:1032729‑M1/35‑36 (MQ=255)
 cACTAAGCTAATTTTAGTTCACATAGACCCTGCTTc                                    <  1:1457932/36‑1 (MQ=255)
 cACTAAGCGAATTTTAGTTCACATAGACCCTGCTTc                                    <  1:393762/36‑1 (MQ=255)
 cACTAAGCGAATTTTAGTTCACATAGACCCTGCTTc                                    <  1:2556073/36‑1 (MQ=255)
 cACTAAGCGAATTTTAGTTCACATAGACCCTGCTTc                                    <  1:315004/36‑1 (MQ=255)
  tgattggatcatcgtgtataggcgcatcggtcaTcg                                   >  1:2606013‑M1/34‑36 (MQ=255)
   gattggatcatcgtgtataggcgcatcggtcaTcgg                                  >  1:6031488‑M1/33‑36 (MQ=255)
   gattggatcatcgtgtataggcgcatcggtcaTcgg                                  <  1:6413178‑M1/4‑1 (MQ=255)
   cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                  >  1:4128114/1‑36 (MQ=255)
   cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                  <  1:2838600/36‑1 (MQ=255)
   cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                  <  1:2764021/36‑1 (MQ=255)
    tAAGCGAATTTTAGTTCACATATACCCTGCTTcggc                                 >  1:342636/1‑36 (MQ=255)
    tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                 <  1:5663851/36‑1 (MQ=255)
    tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                 <  1:3651555/36‑1 (MQ=255)
    tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                 >  1:1021550/1‑36 (MQ=255)
    attggatcatcgtgtataggcgcatcggtcaTcggc                                 <  1:6471980‑M1/5‑1 (MQ=255)
    attggatcatcgtgtataggcgcatcggtcaTcggc                                 >  1:5020251‑M1/32‑36 (MQ=255)
     ttggatcatcgtgtataggcgcatcggtcaTcggcg                                >  1:7397349‑M1/31‑36 (MQ=255)
     ttggatcatcgtgtataggcgcaacggtcaTcggcg                                >  1:1503097‑M1/31‑36 (MQ=255)
     aaGCGAATTTTAGTTCACATAGACCCTGCTTcggcg                                <  1:2363399/36‑1 (MQ=255)
      tggatcatcgtgtataggcgcatcggtcaTcggcgg                               >  1:2681083‑M1/30‑36 (MQ=255)
      tggatcatcgtgtataggcgcatcggtcaTcggcgg                               >  1:1036909‑M1/30‑36 (MQ=255)
      aGCGAATTTTAGTTCACATAGACCCTGCTTcggcgg                               <  1:1721029/36‑1 (MQ=255)
      aGCGAATTTTAGTTCACATAGACCCTGCTTcggcgg                               <  1:505332/36‑1 (MQ=255)
       gCGAATTTTAGTTCACATAGACCCTGCTTCGGCggg                              >  1:2259079/1‑36 (MQ=255)
         gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                            <  1:513641/36‑1 (MQ=255)
         gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                            <  1:4500607/36‑1 (MQ=255)
         atcatcgtgtataggcgcatcggtcaTCGGCGGGGt                            <  1:6465988‑M1/10‑1 (MQ=255)
          tcatcgtgtataggcgcatcggtcaTCggcgggtcg                           <  1:1486520‑M1/11‑4 (MQ=255)
          aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGtt                           <  1:6381/36‑1 (MQ=255)
           catcgtgtataggcgcatcggtcaTCggcgggggtt                          <  1:1730600‑M1/12‑4 (MQ=255)
           aTTTTAGTTCACATAGACCCTGCTTCGGCGGGGttt                          >  1:6554411/1‑36 (MQ=255)
            ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                         <  1:906469/36‑1 (MQ=255)
            ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                         <  1:1444225/36‑1 (MQ=255)
            ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                         <  1:3335547/36‑1 (MQ=255)
            atcgtgtataggcgcatcggtcaTCGGCGGGGtttt                         <  1:6312677‑M1/13‑1 (MQ=255)
              ttAGTTCACATAGACCCTGCTTCGGCGGGGtttttt                       <  1:6459129/36‑1 (MQ=255)
               tAGTTCACATAGACCCTGCTTCGGCGGGGttttttt                      <  1:737095/36‑1 (MQ=255)
               gtgtataggcgcatcggtcaTCGGCGGGTttttttt                      <  1:1867240‑M1/16‑1 (MQ=255)
                tgtataggcgcatcggtcaTCGGCGGGGTTTTTTTa                     <  1:1555632‑M1/17‑1 (MQ=255)
                aGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa                     >  1:391974/1‑36 (MQ=255)
                 gtataggcgcatcggtcaTCGGCGGggtttttttta                    <  1:3361626‑M1/18‑3 (MQ=255)
                 gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt                    <  1:2698648/36‑1 (MQ=255)
                  ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg                   >  1:5534391/1‑36 (MQ=255)
                    cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                 <  1:2524904/36‑1 (MQ=255)
                     acaTAGACCCTGCTTCGGCGGGGTTTTTTTATTGGc                >  1:3909075/1‑36 (MQ=255)
                     acaTAAACCCTGCTTCGGCGGGGTTTTTTTATGGGc                <  1:4179417/36‑1 (MQ=255)
                      caTAGACCCTGCTTCGGCGGGGTTTTTTTATTGGCa               >  1:1114353/1‑36 (MQ=255)
                        tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACg             <  1:6117866/36‑1 (MQ=255)
                          gACCCTGCTTCGGCGGGGTTTTTTTATTTGAACGGt           >  1:3450966/1‑36 (MQ=18)
                          gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt           <  1:5074226/36‑1 (MQ=255)
                           aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg          <  1:2838258/36‑1 (MQ=255)
                             ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCg        <  1:69169/36‑1 (MQ=255)
                                 cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt    <  1:4651226/36‑1 (MQ=255)
                                  ttCGGCGGGGTTTTTTTATTGGCACGGTGCGGGGTg   >  1:3940385/1‑36 (MQ=255)
                                   tCGGCGGGGTTTTTTTATTTGCACGGTGCGGGGTGa  >  1:4882404/1‑36 (MQ=37)
                                   |                                   
TCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGA  >  REL606/1286670‑1286740

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG