Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,268,951 | T→G | 7.6% | I129S (ATC→AGC) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,268,951 | 0 | T→G | 7.6% | 3.2 0.0 ‑0.0 | 48 | 386 | atoC | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
Reads supporting (aligned to +/- strand): new base (1/3): ref base (16/28): total (17/31) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.66e-01 |
GCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGC > REL606/2268920‑2268986
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gcTTTACAACTCCAGTCAATGAAAAAAGAGATCCGt > 1:5134587/1‑36 (MQ=255)
gcTTTACAACTCCAGTCAATGAAAAAAGAGATCCGt < 1:6858959/36‑1 (MQ=255)
gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGt < 1:2855928/36‑1 (MQ=255)
cTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTc < 1:7584317/36‑1 (MQ=255)
cTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTc < 1:7518758/36‑1 (MQ=255)
cTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTc > 1:4997435/1‑36 (MQ=255)
cTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTc < 1:3648916/36‑1 (MQ=255)
ttACAACTCCAGTCAATGAAAAAAGAGATCCGTCAt < 1:3953356/36‑1 (MQ=255)
tACAACTACAGTCAATGAAAAAAGAGATCCGTCATc < 1:6563631/36‑1 (MQ=255)
aaaaCTCCAGTCAATGAAAAAAGAGATCCGTCATCt < 1:3541971/34‑1 (MQ=255)
cAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTg < 1:6600074/36‑1 (MQ=255)
aaaCTCCAGTCAATGAAAAAAGAGATCCGTCATCTg < 1:4428655/35‑1 (MQ=255)
cTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAc < 1:5061944/36‑1 (MQ=255)
cTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAc > 1:6672624/1‑36 (MQ=255)
cTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAc < 1:1534873/36‑1 (MQ=255)
tCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAcc < 1:2869726/36‑1 (MQ=255)
tCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAcc < 1:466063/36‑1 (MQ=255)
tCCAGTCAATGAAAAAAGAGATCCGTCATCTGCAcc < 1:4690422/36‑1 (MQ=255)
caaGTAAATGAAAACAGAGATCCGTCATCTGCACCa < 1:5328371/34‑1 (MQ=37)
aGTCAATGAAAAAAGAGATCCGTCATCTGCACCAgg > 1:4713313/1‑36 (MQ=255)
ggcAATGAAAAAAGAGATCCGTCATCTGCTCCAGGc < 1:2643270/34‑1 (MQ=37)
tCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCa < 1:2589775/36‑1 (MQ=255)
cAATGAAAAAAGAGATCAGTCTTCTGCACCAGTCAc > 1:3062371/1‑36 (MQ=25)
aaTGAAAAAAGAGATCCGTCATCTGCACCAGGCACt < 1:2934154/36‑1 (MQ=255)
aaTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACt < 1:6855083/36‑1 (MQ=255)
aaTGAAAAAAGACAGCCGTCATCTGCATCATGCACt > 1:3316442/1‑36 (MQ=16)
aTGAAAAAAGAGATCCGTCATCTGCACCAGGCACTg > 1:5195711/1‑36 (MQ=255)
tGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGa > 1:7543260/1‑36 (MQ=255)
tGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGa < 1:5673504/36‑1 (MQ=255)
gAAAAAAGAGATCCGTCATCTGCACCAGGCCCTGAg < 1:60216/36‑1 (MQ=255)
gAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAg > 1:5885336/1‑36 (MQ=255)
gAAAAAAGAGATCCGTCATCTGCACCAGCCACTGAg > 1:4732647/1‑36 (MQ=255)
aaaaaGAGATCCGTCATCTGCACCAGGCACTGAGCa > 1:1679464/1‑36 (MQ=255)
aaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCAc < 1:2018964/36‑1 (MQ=255)
aaaGAGATCCGTCATCTGCACCAGGCACTGAGCAcc < 1:844466/36‑1 (MQ=255)
aaaGAGATCCGTCATCTGCACCAGGCACTGAGCAcc > 1:4116323/1‑36 (MQ=255)
aaaGAGATCCGTCATCTGAACAAGGCACTGAGCaac > 1:4200895/1‑34 (MQ=21)
aaGAGATCCGTCATCTGCACCAGGCACTGAGCACCa > 1:7565804/1‑36 (MQ=255)
agagATCCGTCATCTGCACCAGGCACTGAGCACCAg < 1:5429319/36‑1 (MQ=255)
agagATCCGTCATCTGCACCAGGCACTGAGCACCAg < 1:7071844/36‑1 (MQ=255)
gagaTCCGTCATCTGCACCAGGCACTGAGCACCAGc < 1:2001850/36‑1 (MQ=255)
gagaTCCGTCATCTGCACCAGGCACTGAGCACCAGc < 1:2082383/36‑1 (MQ=255)
agaTCCGTCATCTGCACCAGGCACTGAGCACCAGCt > 1:4035467/1‑36 (MQ=255)
agaTCCGTCATCTGCACCAGGCACTGAGCACCAGCt > 1:5540622/1‑36 (MQ=255)
aTCCGTCATCTGCACCAGGCACTGAGCACCAGCTgg < 1:7223481/36‑1 (MQ=255)
aTCCGTCATCTGCACCAGGCACTGAGCACCAGCTgg > 1:2842712/1‑36 (MQ=255)
aTCCGTCATCTGCACCAGGCACTGAGCACCAGCTgg < 1:5590034/36‑1 (MQ=255)
aTCCGTCATCTGCACCAGGCACTGAGCACCAGCTgg < 1:784062/36‑1 (MQ=255)
tCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGc > 1:2280541/1‑36 (MQ=255)
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GCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGC > REL606/2268920‑2268986
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|