Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,908,398 | +G | 7.1% | coding (1329/2871 nt) | xdhD → | fused predicted xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit/Fe‑S binding subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,908,398 | 1 | .→G | 7.1% | 8.7 ‑3.0 ‑0.3 | 42 | coding (1329/2871 nt) | xdhD | fused predicted xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit/Fe‑S binding subunit |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (13/26): total (16/26) | ||||||||||
Fisher's exact test strand distribution p-value = 4.88e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.38e-01 |
CATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGACATCCTGCTGGAAG > REL606/2908363‑2908432
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cATAAAGTTCATGTCATTAAAGAGCGAGTTggcggc > 1:6605155/1‑36 (MQ=255)
aTAAAGTTCATGTCATTAAAGAGCGAGTTGgcggc.g > 1:3206923/1‑36 (MQ=255)
tAAAGTTCATGTCATTAAAGAGCGAGTTGGcggc.gg < 1:7949151/36‑1 (MQ=255)
tAAAGTTCATGTCATTAAAGAGCGAGTTGGcggc.gg < 1:7457968/36‑1 (MQ=255)
aaaGTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGt < 1:5778449/36‑1 (MQ=255)
aaaGTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGt < 1:2256622/36‑1 (MQ=255)
aaGTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGtt < 1:6161127/36‑1 (MQ=255)
gTTCATGTTATTAAAGAGCGAGTTGGCGGC.GGtttt < 1:4843691/36‑1 (MQ=255)
gTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGtttt > 1:4687850/1‑36 (MQ=255)
gTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGtttt > 1:6420532/1‑36 (MQ=255)
ttCATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTg < 1:6623403/36‑1 (MQ=255)
tCATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTgg < 1:5082726/36‑1 (MQ=255)
tCATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTgg < 1:407172/36‑1 (MQ=255)
cATGTCATTAAAGAGCGAGTTGGCGGC.GGttttttt > 1:5916982/1‑33 (MQ=255)
cATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTTGt > 1:2069614/1‑36 (MQ=255)
tGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTTGttt > 1:7309398/1‑35 (MQ=255)
tGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTc < 1:2293315/36‑1 (MQ=255)
tCATTAAAGAGCGAGTTGGCGGC.GGTTTTTGtttcc > 1:2494954/1‑33 (MQ=37)
tCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCa < 1:134118/36‑1 (MQ=255)
tCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCa < 1:6184096/36‑1 (MQ=255)
tCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCa < 1:5914718/36‑1 (MQ=255)
aTTAAAGAGCGAGTTGGCGGCGGGTTTTGTTTCCaa > 1:5877128/1‑36 (MQ=25)
ttAAAGAGCGAGTTGGCGGCGGGTTTTTTTTCCaac > 1:4431382/1‑35 (MQ=16)
ttAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCAAAc < 1:5171150/36‑1 (MQ=255)
tAAAGAGCGAGTTGTCGGC.GGTTTTGGTTCCAAACa < 1:6422251/36‑1 (MQ=255)
tAAAGAGCGAGTTGGCGGCGGGTTTTGTTTCCaata > 1:5470028/1‑34 (MQ=21)
tAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCAAACa < 1:2497429/36‑1 (MQ=255)
tAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCAAACa < 1:8385949/36‑1 (MQ=255)
aaGAGCGAGTTGGCGGC.GGTTTTTGTTCCCAACAgg > 1:6145573/1‑36 (MQ=37)
aaGAGCGAGTTGGCGGC.GGGTTTTGTTTCCAACAgg > 1:3809638/1‑36 (MQ=19)
agagCGAGTTGGCGGC.GGTTTTTGTTTCCAACAggg > 1:7603791/1‑35 (MQ=21)
gagCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGAc < 1:4829763/36‑1 (MQ=255)
gagCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGAc < 1:546910/36‑1 (MQ=255)
gagCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGAc < 1:2600487/36‑1 (MQ=255)
gagCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGAc < 1:2542104/36‑1 (MQ=255)
gagCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGAc < 1:7848212/36‑1 (MQ=255)
agCGAGTTGGCGGC.GGTTTTTGTTTCAAACAgggga > 1:6392214/1‑33 (MQ=25)
gCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGACAt < 1:7153016/36‑1 (MQ=255)
cGAGTTGGCGGC.GGTTTTTGTTTCCAACAGGACATc > 1:1225169/1‑36 (MQ=25)
cGAGTTGGCGGC.GGTTTTTGTTTACAACACGACAtt > 1:2589909/1‑35 (MQ=12)
cGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGACATc < 1:281281/36‑1 (MQ=255)
gAGTTGGCGGC.GGTTTTTGTTTCCAACAGGACATcc > 1:6083223/1‑36 (MQ=25)
gAGTTGGCGGC.GGTTTTGGTTCCAAACAGGACATcc < 1:3051068/36‑1 (MQ=255)
aGTTGGCGGC.GTTTTTGGTTCCAAACAGGACATCct < 1:1880547/36‑1 (MQ=255)
tGGCGGC.GGTTTTGGTTCCAAACAGGACATCctgct < 1:3122517/36‑1 (MQ=255)
tGGCGGC.GGTTTTGGGTCCAAACAGGACATCctgct < 1:4327295/36‑1 (MQ=255)
ggcggc.GGTTTTTGTTTCCCACAGGACATCctgctt > 1:1622256/1‑35 (MQ=16)
cggc.ggTTTTGGTTCCAAACAGGACATCCTGCTGga < 1:3260657/36‑1 (MQ=255)
ggc.ggTGTTGGTTCCAAACAGGACATCCTGCTGgaa < 1:6060697/36‑1 (MQ=255)
gc.ggTTTTGGTTCCAAACAGGACATCCTGCTGgaag > 1:600441/1‑36 (MQ=255)
gc.ggTTTTGGTTCCAAACAGGACATCCTGCTGgaag < 1:5240753/36‑1 (MQ=255)
gc.ggTTTTGGTTCCAAACAGGACATCCTGCTGgaag < 1:3867560/36‑1 (MQ=255)
gc.ggTTTTGGTTCCAAACAGGACATCCTGCTGgaag < 1:2153666/36‑1 (MQ=255)
gc.ggTTTTGGTTCCAAACAGGACATCCTGCTGgaag > 1:944448/1‑36 (MQ=255)
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CATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGC.GGTTTTGGTTCCAAACAGGACATCCTGCTGGAAG > REL606/2908363‑2908432
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 21 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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