Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,045,956 | C→A | 29.9% | L16F (TTG→TTT) | yghJ ← | predicted inner membrane lipoprotein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,045,956 | 0 | C→A | 29.9% | 11.3 ‑2.7 ‑0.1 | 30 | 48 | yghJ | predicted inner membrane lipoprotein |
Reads supporting (aligned to +/- strand): new base (0/9): ref base (8/13): total (8/22) | ||||||||||
Fisher's exact test strand distribution p-value = 6.65e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.73e-01 |
CCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTT > REL606/3045921‑3045988
|
ccACCGCCATCACAACCGGCTAACAGGGTTGCGCTc < 1:6240348/36‑1 (MQ=255)
cACCGCCATCACAACCGGCTAACAGGGTTGCGCTCa > 1:782667/1‑36 (MQ=255)
cccGCCATCACAACCGGCTAACAGGGTTGCGCTCaa < 1:7751995/35‑1 (MQ=255)
aCCGCCATCACAACCGGCTAACAGGGTTGCGCTCaa < 1:214407/36‑1 (MQ=255)
ccGCCATCACAGCCGGCTAACAGAGTTGCGCTCaaa < 1:279349/36‑1 (MQ=38)
ccGCCATCACAACCGGCTAACAGTGTTGCGCTCaaa < 1:3618977/36‑1 (MQ=255)
ccGCCATCACAACCGGCTAACAGGGTTGCGCTCaaa < 1:6587471/36‑1 (MQ=255)
cGCCATCACAACCGGCTAACAGGGTTGCGCTCaaac < 1:6448156/36‑2 (MQ=255)
ccATCACAACCGGCTAACAGGGTTGCGCTCAAAATa < 1:266243/36‑1 (MQ=255)
tCACAACCGGCTAACAGGGTTGCGCTCAAAATAGcc < 1:5390493/36‑1 (MQ=255)
tCACAACCGGCTAACAGGGTTGCGCTCAAAATAGcc > 1:3655042/1‑36 (MQ=255)
tCACAACCGGCTAACAGGGTTGCGCTCAAAATAGcc < 1:764267/36‑1 (MQ=255)
tCACAACCGGCAAACAGGGTTGCGCTCAAAATAGcc < 1:3866821/36‑1 (MQ=255)
aaaCCGGCTAACAGGGTTGCGCTCAAAATAGCCGCt < 1:2925647/35‑1 (MQ=255)
aCCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaa < 1:7463922/36‑1 (MQ=255)
aCCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaa > 1:3982595/1‑36 (MQ=255)
aCCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaa > 1:1511353/1‑36 (MQ=255)
aCCGGATAACAGGGTTGCGCTAAAAATAGCCGCTaa < 1:1644932/36‑1 (MQ=37)
ccGGCTAACAGGTTTGCGCTAAAAATAGCCGCTaaa < 1:862269/36‑1 (MQ=37)
ccGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaaa < 1:858968/36‑1 (MQ=255)
ggatAACAGGGTTGCGCTAAAAATAGCCGCTAAAAg < 1:4132944/33‑1 (MQ=37)
cTAACAGGGTTGCGCTAAAAATAGCCGCTAAAAGCg < 1:1254683/36‑1 (MQ=255)
tAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGa > 1:6819245/1‑36 (MQ=255)
aaaaGGGTTGCCCTAAAAATAGCCGCTAAAAGCGAt < 1:362515/33‑1 (MQ=25)
aaaGGGTTGCGCTAAAAATAGCCGCTAAAAGCGAtt < 1:7861976/34‑1 (MQ=37)
aGGGTGGCGCTAAAAATAGCCGCTAAAAGCGATTTc < 1:3040733/36‑1 (MQ=37)
gggTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCt > 1:3042496/1‑36 (MQ=255)
tGCGCAAAAAATAGCCGCTAAAAGCGATTTCTtata < 1:1554402/36‑1 (MQ=37)
cgcTCAAAATAGCCGCTAAAAGCGATTTCTTATAtt > 1:3326483/1‑36 (MQ=255)
cgcTAAAAATAGCCGCTAAAAGCGATTTCTTATAtt < 1:7030195/36‑1 (MQ=255)
gcTCAAAATAGCCGCTAAAAGCGATTTCTTATAttt > 1:3371244/1‑36 (MQ=255)
|
CCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTT > REL606/3045921‑3045988
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|