New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1955860 =25 (0.490)7 (0.140) 3/58 NT 15.9% coding (50/888 nt) motA flagellar motor protein MotA
?REL606 = 4141016 49 (0.790)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

TTATTAGGTTACCTGGTTGTTCTCGGTACAGTTTTCGGCGG............  <  REL606/1955900‑1955860
...................................CGGCGGGTTTTTTCTTTT  <  REL606/4141016‑4141005
                                                     
         TACCTGGTTGTTCTCGGTACAGTTTTCGGCGGGTTT          >  1:5485810/1‑36 (MQ=1)
          ACCTGGTTGTTCTCGGTACAGTTTTCGGCGGTTTTT         >  1:4500260/1‑36 (MQ=0)
          ACCTGGTTGTTCTCGGTACAGTTTTCGGCGGTTTTT         >  1:6997068/1‑36 (MQ=0)
             TGGTTGTTCTCGGTACAGTTTTCGGCGGGTTTTTTt      >  1:6338915/1‑35 (MQ=17)
                TTGTTCTCGGTACAGTTTTCGGCGGGTTTTTTTTTT   >  1:4701667/1‑36 (MQ=0)
                 TGTTCTCGGTACAGTTTTCGGCGGGTTTTTTTTTTc  >  1:1713578/1‑35 (MQ=0)
                 TGTTCTCGGTACAGTTTTCGGCGGGTTTTTTTTTTT  >  1:2798616/1‑36 (MQ=0)
                                                     
TTATTAGGTTACCTGGTTGTTCTCGGTACAGTTTTCGGCGG............  <  REL606/1955900‑1955860
...................................CGGCGGGTTTTTTCTTTT  <  REL606/4141016‑4141005

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG