Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,524,522 IS186 (+) +6 bp 25.9% coding (494‑499/549 nt) fimA → major type 1 subunit fimbrin (pilin)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 15386 =NA (NA)6 (0.110) 6/64 NT 21.4% noncoding (1/1343 nt) IS186 repeat region
?REL606 = 4524527 22 (0.490)coding (499/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? REL606 = 16728NA (NA)9 (0.170) 8/64 NT 30.0% noncoding (1343/1343 nt) IS186 repeat region
?REL606 4524522 = 21 (0.420)coding (494/549 nt) fimA major type 1 subunit fimbrin (pilin)

TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG...................................  >  REL606/16691‑16728
...................................GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACC  >  REL606/4524522‑4524556
                                                                         
   TCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGC                                    >  1:2834139/1‑36 (MQ=32)
     AGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCG                                  >  1:4378286/1‑36 (MQ=38)
      GATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCGC                                 >  1:7238266/1‑36 (MQ=40)
        TGGTTTAACCCTTAAGTTAGCGCTTATGGGCCGCAA                               <  1:7201532/36‑1 (MQ=255)
          GTTCAACCCTTAAGTTAGCGCTTATGGGCCGCAACC                             <  1:7332263/36‑1 (MQ=255)
            TCAACCCTTAAGTTAGCGCTTATGGGCCGCAACCCC                           >  1:4148069/1‑36 (MQ=255)
                CCCTTAAGTTAGCGCTTATGGGCCGCAACCCCGGGT                       <  1:5014619/36‑1 (MQ=255)
                              CTTATGGGCCGCAACCCCGGGTGCTGCTAATGCGGA         <  1:1372558/36‑1 (MQ=255)
                                ccTGGGCCGCAACCCCGGGTGCTGCTAATGCGGATG       <  1:6440325/34‑1 (MQ=255)
                                                                         
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG...................................  >  REL606/16691‑16728
...................................GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACC  >  REL606/4524522‑4524556

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 37 ≤  ATCG