New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 306111726 (0.500)3 (0.060) 3/60 NT 8.7% coding (752/1173 nt) ECB_02854 conserved hypothetical protein
?REL606 = 4141016 37 (0.620)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

TGGCACCTTCAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGAAGTGCTGC  >  REL606/3061082‑3061152
                                   |                                   
tGGCACCTTCAGTAAAAGTCTGGCCTCGATTGGCGG                                     >  1:4334338‑M1/1‑36 (MQ=255)
tGGCACCTTCAGTAAAAGTCTGGCCTCGATTGGCGG                                     <  1:4012073‑M1/36‑1 (MQ=255)
tGGCACCTTCAGTAAAAGTCTGGCCTCGATTGGCGG                                     >  1:4008388‑M1/1‑36 (MQ=255)
tGGCACCTCCAGTAAAAGTCTGGCCTCGATTGGCGG                                     <  1:5434901‑M1/36‑1 (MQ=255)
  gCACCTTCAGTAAAAGGCTGGCCTCGATTGGCGGtt                                   <  1:2837776/36‑1 (MQ=255)
   cACCTTCAGTAAAAGTCTGGCCTCGATTGGCGGttt                                  <  1:5285422/36‑1 (MQ=255)
    aCCTTCAGTAAAAGTCTGGCCTCGATTGGCGGtttt                                 >  1:4870262/1‑36 (MQ=255)
    aCCTTCAGTAAAAGTCTGGCCTCGATTGGCGGtttt                                 <  1:3546641/36‑1 (MQ=255)
    aCCTTCAGTAAAAGTCTGGCCTCGATTGGCGGtttt                                 <  1:3084438/36‑1 (MQ=255)
    aCCTTCAGTAAAAGTCTGGCCTCGATTGGCGGtttt                                 <  1:7267969/36‑1 (MQ=255)
    aCCTTCAGTAAAAGTCTGGCCTCGATTGGCGGgttt                                 >  1:6439791‑M1/1‑32 (MQ=255)
     ccTTCAGTAAAAGTCTGGCCTCGATTGGCGGTTTTg                                <  1:7241799/36‑1 (MQ=255)
      cTTCAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGc                               <  1:1919032/36‑1 (MQ=255)
        tCAGTAAAAGTCTGGCCTCTATTGGCGGTTTTGCTg                             <  1:6599758/36‑1 (MQ=255)
         cAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGt                            <  1:583491/36‑1 (MQ=255)
         cAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGt                            <  1:2453360/36‑1 (MQ=255)
         cAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGt                            <  1:3789427/36‑1 (MQ=255)
          aGTAAAAGTCTGGCCTCTGTTTGCGGTTTTGCTGTc                           <  1:3384500/36‑1 (MQ=25)
          aGTAAAAGTCTGGCCTCGATTGGCGGgttttttttt                           >  1:5372163‑M1/1‑26 (MQ=255)
          aGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGTc                           <  1:3019909/36‑1 (MQ=255)
            tAAAAGTCTGGCCTCGATTGGCGGgttttttttttt                         >  1:4749566‑M1/1‑24 (MQ=255)
             aaaaTTCTGGCCTCGATTGGCGGTTTTGCTGTCGGt                        <  1:5864805/36‑1 (MQ=255)
             aaaaGTCTGGCCTCGATTGGCGGTTTTGCTGTCGGt                        <  1:5276287/36‑1 (MQ=255)
             aaaaGTCTGGCCTCGATTGGCGGTTTTGCTGTCGGt                        <  1:5620612/36‑1 (MQ=255)
              aaaGTCTGGCCTCGATTGGCGGTTTTGCTGTCGGtt                       <  1:7098912/36‑1 (MQ=255)
                 gTCTGGCCTCGATTGGCGGTTTTGCTGTCGGTTCgg                    <  1:4269926/36‑1 (MQ=255)
                  tCTGGCCTCGATTGGCGGTTTTGCTGTCGGTTCGGa                   <  1:2906184/36‑1 (MQ=255)
                      gCCTCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCg               <  1:6337728/36‑1 (MQ=255)
                        cTCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGAt             <  1:4036607/36‑1 (MQ=255)
                         tCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATg            <  1:6420636/36‑1 (MQ=255)
                         tCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATg            <  1:6672324/36‑1 (MQ=255)
                          cGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATgg           <  1:1022936/36‑1 (MQ=255)
                           gATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGa          <  1:5712766/36‑1 (MQ=255)
                            aTTGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGaa         <  1:5001823/36‑1 (MQ=255)
                            aTTGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGaa         <  1:473275/36‑1 (MQ=255)
                             ttGGCGGTTTTTCTTTCGGTTTTGGAGGGATGGGAg        >  1:2130718/1‑36 (MQ=2)
                              tGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGAAGt       <  1:1985418/36‑1 (MQ=255)
                                gCGGTTTTGCTGTCGGTTCGGAAGCGATGGAAGtgc     <  1:7527754/36‑1 (MQ=255)
                                   gTTTTGCTGTCGGTTTGGAAGCGATGGAAGtgatgc  >  1:1764901/1‑36 (MQ=37)
                                   gTTTTGCTGTCGGTTCGGAAGCGATGGAAGtgctgc  <  1:184421/36‑1 (MQ=255)
                                   |                                   
TGGCACCTTCAGTAAAAGTCTGGCCTCGATTGGCGGTTTTGCTGTCGGTTCGGAAGCGATGGAAGTGCTGC  >  REL606/3061082‑3061152

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG