Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,174,746 | 0 | T→C | 3.6% | 0.4 ‑2.6 ‑0.7 | 84 | 965 | thiC | thiamine biosynthesis protein ThiC |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (3/0): ref base (33/48): total (36/48) | ||||||||||
Fisher's exact test strand distribution p-value = 7.49e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.96e-01 |
CATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTA > REL606/4174711‑4174781
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cATGGATAGTGAAGTANTCCAATCCTTGCTCGGCCt < 1:2576493/36‑1 (MQ=37)
aTGGATAGTGAAGTAATCCACACCTTGCTCGGCCTg > 1:5988341/1‑36 (MQ=255)
tGGTTAGTGAAGTAATCCACACCTTGCTCGGCCTGt > 1:4732082/1‑36 (MQ=255)
tGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGt > 1:1099074/1‑36 (MQ=255)
tGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGt < 1:1263631/36‑1 (MQ=255)
tGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGt > 1:663732/1‑36 (MQ=255)
ggATAGTGAAGTAATCCACACCTTGCTCGGCCTGtt < 1:1772956/36‑1 (MQ=255)
ggATAGTGAAGTAATCCACACCTTGCTCGGCCTGtt < 1:7145594/36‑1 (MQ=255)
gATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTc > 1:5508102/1‑36 (MQ=255)
gATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTc > 1:6235074/1‑36 (MQ=255)
gATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTc < 1:6242359/36‑1 (MQ=255)
gATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTc < 1:920194/36‑1 (MQ=255)
gATAGTGAAGTAATCCACACCTCGCTCGGCCTGTTc > 1:1414023/1‑36 (MQ=255)
aTAGTGAAGTAATCCACACCTTGCTCGGCCTGTTcc < 1:2119551/36‑1 (MQ=255)
tAGTGAAGTAATCCACGCCTTGCTCGGCCTGTTCca < 1:2175473/36‑1 (MQ=255)
tAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCca < 1:3909882/36‑1 (MQ=255)
tAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCca < 1:6190786/36‑1 (MQ=255)
aGTGAAGTAATCCACACCTTGCTCGGCCCGTTCcag > 1:7459893/1‑36 (MQ=255)
gTGAAGTAATCCACACCTTGCTCGGCCTGTTCcagc < 1:508034/36‑1 (MQ=255)
gTGAAGTAATCCACACCTTGCTCGGCCTGTTCcagc < 1:3581788/36‑1 (MQ=255)
gTGAAGTAATCCACACCTTGCTCGGCCTGTTCcagc < 1:1425594/36‑1 (MQ=255)
gTGAAGTAATCCACACCTTGCTCGGCCTGTTCcagc < 1:7337900/36‑1 (MQ=255)
tGAAGTAATCCACACCTTGCTCGGCCTGTTCcagca < 1:6748203/36‑1 (MQ=255)
tGAAGTAATCCACACCTTGCTCGGCCTGTTCcagca < 1:673278/36‑1 (MQ=255)
tGAAGTAATCCACACCTTGCTCGGCCTGTTCcagca < 1:5948281/36‑1 (MQ=255)
tGAAGTAATCCACACCTTGCTCGGCCTGTTCcagca < 1:1508977/36‑1 (MQ=255)
gAAGTAATCCACACCTTGCTCGGCCTGTTCcagcag < 1:4431112/36‑1 (MQ=255)
gAAGTAATCCACACCTTGCTCGGCCTGTTCcagcag > 1:4015061/1‑36 (MQ=255)
gAAGTAATCCACACCTTGCTCGGCCTGTTCcagcag > 1:1564444/1‑36 (MQ=255)
aaGTAATCCACACCTTGCTCGGCCTGTTCCagcagc < 1:5194800/36‑1 (MQ=255)
aaGTAATCCACACCTTGCTCGGCCTGTTCCagcagc > 1:2573022/1‑36 (MQ=255)
tAATCCACACCTTGCTCGGCCTGTTCCAGCAGCgtg > 1:6179085/1‑36 (MQ=255)
aaTCCACACCTTGCTCGGCCTGTTCCAGCAGCgtgt > 1:3958826/1‑36 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc > 1:5486011/1‑36 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc < 1:3291445/36‑1 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc > 1:5749902/1‑36 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc > 1:4390225/1‑36 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc < 1:6855495/36‑1 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc < 1:6011647/36‑1 (MQ=255)
aTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTc > 1:2005560/1‑36 (MQ=255)
tCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTcg < 1:397695/36‑1 (MQ=255)
tCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTcg > 1:4652675/1‑36 (MQ=255)
tCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTcg < 1:5238379/36‑1 (MQ=255)
cacaCCTTGCTCGGCCTGTTCCAGCAGCGTGTcgcg > 1:4506512/1‑36 (MQ=255)
cacCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGa < 1:2944825/36‑1 (MQ=255)
cacCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGa < 1:2741050/36‑1 (MQ=255)
cacCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGa < 1:6897338/36‑1 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa > 1:850571/1‑36 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa < 1:5791369/36‑1 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa > 1:6998231/1‑36 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa > 1:2422725/1‑36 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa < 1:3535314/36‑1 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa < 1:439474/36‑1 (MQ=255)
acCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGaa > 1:101885/1‑36 (MQ=255)
ccTTGCTCGTCCTGTTCCAGCAGCGTGTCGCCGAAc < 1:5522795/36‑1 (MQ=37)
ccTTGCTCGGCCTGTTCCAGCAGCGTGTTGCGGAAc < 1:3150920/36‑1 (MQ=255)
ccTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAAc < 1:2911474/36‑1 (MQ=255)
cTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACg > 1:3305087/1‑36 (MQ=255)
cTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACg < 1:5883878/36‑1 (MQ=255)
cTTGCTCGGCCTGCTCCAGNAGCGTGTCGCGGAACg > 1:2697094/1‑36 (MQ=38)
ttGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGc > 1:3319916/1‑36 (MQ=255)
ttGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGc > 1:7493289/1‑36 (MQ=255)
tGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCt > 1:753391/1‑36 (MQ=255)
tGCTCGGCCCGTTCCAGCAGCGTGTCGCGGAACGCt > 1:2892478/1‑36 (MQ=255)
gCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCtt < 1:1843895/36‑1 (MQ=255)
gCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCtt > 1:3551244/1‑36 (MQ=255)
gCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCtt < 1:4941035/36‑1 (MQ=255)
gCTCGGCCCGTTCCAGCAGCGTGTCGCGGAACGCtt > 1:641999/1‑36 (MQ=255)
cTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTc < 1:5195168/36‑1 (MQ=255)
cTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTc > 1:4090453/1‑36 (MQ=255)
cTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTc > 1:3927384/1‑36 (MQ=255)
tCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTcc > 1:7424250/1‑36 (MQ=255)
tCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTcc < 1:4155304/36‑1 (MQ=255)
tCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTcc < 1:4392056/36‑1 (MQ=255)
tCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTcc < 1:4514349/36‑1 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTccc < 1:3867860/36‑1 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTccc > 1:1023696/1‑36 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTccc < 1:577893/36‑1 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTccc < 1:4556015/36‑1 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTccc < 1:4635830/36‑1 (MQ=255)
ggCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCa < 1:6180634/36‑1 (MQ=255)
ggCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCa < 1:594021/36‑1 (MQ=255)
ggCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCa > 1:5052423/1‑36 (MQ=255)
gCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAg < 1:7359732/36‑1 (MQ=255)
cTGTTCCAGCAGGGTGTCGCGGAACGCTTCCCAGGt < 1:2451293/36‑1 (MQ=255)
tGTTCCAGCAGCGTGTCGCGGAACGCTTCCCCGGTa > 1:3597060/1‑36 (MQ=255)
tGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTa > 1:6177474/1‑36 (MQ=255)
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CATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTA > REL606/4174711‑4174781
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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