Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546958–547700 | 555923–555877 | 8178–8966 | 17 [14] | [0] 105 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 0 (0.000) | 60 (1.120) | 39/62 | NT | 100% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
Only 100 of 117 total aligned reads displayed.
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
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atcatACACTAAATCAGTAAGTTTGCAGCATCACCc > 1:4348209‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:2329219‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:2465198‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:6795313‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:6784865‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:6650352‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:620040‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:309262‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:3339244‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:3506769‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:4326906‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:4678366‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:5989267‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:5826734‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:4936450‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:4988404‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:5007397‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:5736758‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:165733‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:7787638‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:2141527‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:1829606‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:1198988‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGCAAGTTGGCAGCATCACCc < 1:1447895‑M2/36‑2 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:3471534‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca > 1:6097007‑M2/1‑34 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:5123027‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca > 1:4199055‑M2/1‑34 (MQ=255)
tcatACACTAAATCAGGAAGTTGGCAGCATCACCca < 1:7213474‑M2/36‑3 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa > 1:7231316‑M2/1‑33 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa > 1:5218823‑M2/1‑33 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa < 1:2287903‑M2/36‑4 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcacg < 1:1507905‑M2/36‑5 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:2705458‑M2/36‑5 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa > 1:5748810‑M2/1‑32 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:5748071‑M2/36‑5 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:7567482‑M2/36‑5 (MQ=255)
atACACTAAAACCGTAATTTGACAGCCTCACCCaaa < 1:7612109/36‑1 (MQ=2)
tACGCTAAATCAGTAAGTTGGCAGCATCACCCAAat < 1:6068814/36‑1 (MQ=255)
tACACTAAATCAGTAAGTTGGCAGCATCACCcaaac > 1:1071359‑M2/1‑31 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc > 1:4766599‑M2/1‑29 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc < 1:1974560‑M2/36‑8 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc > 1:1301525‑M2/1‑29 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc > 1:2566308‑M2/1‑29 (MQ=255)
cTAAATCAGTAAGTTGGCAGCATCACCcaaacgcgc < 1:6115669‑M2/36‑10 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca > 1:4044959‑M2/1‑26 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca < 1:4010806‑M2/36‑11 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca < 1:3955454‑M2/36‑11 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCCAAATATCCt < 1:2701379/36‑1 (MQ=255)
aaaTCAGTAAGTTGGCAGCATCACCcaaacgcgcat < 1:4400150‑M2/36‑12 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc < 1:5472432‑M2/36‑13 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc > 1:2077964‑M2/1‑24 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCCAAATATCCTtg < 1:2426285/36‑1 (MQ=255)
aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca < 1:74091‑M2/36‑14 (MQ=255)
aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca > 1:1321356‑M2/1‑23 (MQ=255)
cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg < 1:3159885‑M2/36‑16 (MQ=255)
cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg > 1:3892727‑M2/1‑21 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt < 1:4906011‑M2/36‑17 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt < 1:2467166‑M2/36‑17 (MQ=255)
aGTAAGTTGGCAGCATCACCCAAATATCCTTGTGat < 1:6853650/36‑1 (MQ=255)
gTAAGTTGGCAGCATCACCgaaacgcgcatcaggtg > 1:2759949‑M2/1‑19 (MQ=255)
gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg < 1:4690790‑M2/36‑18 (MQ=255)
gTAAGTTGGCAGCATCACCCAAATATCCTTGTGata < 1:932756/36‑1 (MQ=255)
gTAAGTTGGCAGCATCACCCAAATATCCTTGTGata < 1:3375425/36‑1 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc < 1:2189957‑M2/36‑19 (MQ=255)
aaGTTGGCAGCATCACCcaaacgcgcatcaggtgca > 1:6746416‑M2/1‑17 (MQ=255)
aaGTTGGCAGCATCACCCAAATATCCTTGTGataat < 1:6697399/36‑1 (MQ=255)
aaGTTGGCAGCATCACCCAAATATCCTTGTGataat > 1:4750774/1‑36 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa < 1:1520159‑M2/36‑21 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa < 1:1380728‑M2/36‑21 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa < 1:6783772‑M2/36‑21 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa > 1:6426746‑M2/1‑16 (MQ=255)
gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac > 1:1690125‑M2/1‑15 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca < 1:410424‑M2/36‑23 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat < 1:1947148‑M2/36‑24 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat < 1:2907091‑M2/36‑24 (MQ=255)
tGGCAGCATCACCCAAATATCCTTGTGATAAtattt < 1:6128950/36‑1 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:1690029‑M2/36‑25 (MQ=255)
ggCAGCATCACCCAAATATCCTTGTGATAAtattta < 1:7063171/36‑1 (MQ=255)
gcagcaTCACCcaaacgcgcatcaggtgcaacatac > 1:5500129‑M2/1‑11 (MQ=255)
gcagcaTCACCcaaacgcgcatcaggtgcaacatac > 1:1372197‑M2/1‑11 (MQ=255)
cagcaTCACCcaaccgcgcatcaggtgcaacataca < 1:5905090‑M2/36‑27 (MQ=255)
cagcaTCACCcaaacgcgcatcaggtgcaacataca > 1:929313‑M2/1‑10 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt < 1:4983379‑M2/36‑29 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt < 1:5995560‑M2/36‑29 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt > 1:6303298‑M2/1‑8 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt > 1:2940324‑M2/1‑8 (MQ=255)
gcaTCACCCAAATATCCTTGTGATAATATTtattat > 1:5747951/1‑36 (MQ=255)
caTCACCcaaacgcgcatcaggtgcaacatacatta > 1:2280401‑M2/1‑7 (MQ=255)
aTCACCCAAATATCCTTGTGATAATATTTATTATaa < 1:5603390/36‑1 (MQ=255)
tCACCcaaacgcgcatcaggtgcaacatacattaat < 1:6749529‑M2/36‑32 (MQ=255)
tCACCcaaacgcgcatcaggtgcaacatacattaat > 1:4750557‑M2/1‑5 (MQ=255)
tCACCcaaacgcgcatcaggtgcaacatacattaat < 1:7753631‑M2/36‑32 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata < 1:2763463‑M2/36‑33 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata < 1:5388516‑M2/36‑33 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata > 1:5523639‑M2/1‑4 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:6333627‑M2/1‑3 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:3052510‑M2/1‑3 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa < 1:4359470‑M2/36‑34 (MQ=255)
ccaaacgcgcatcaggtgcaacatacattaataaat > 1:7494102‑M2/1‑1 (MQ=255)
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ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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