Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,950,038 | 1 | .→C | 3.9% | 0.6 ‑3.1 0.0 | 51 | coding (1424/1662 nt) | tar | methyl‑accepting chemotaxis protein II |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/2): ref base (40/9): total (40/11) | ||||||||||
Fisher's exact test strand distribution p-value = 4.31e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TGCGTTCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGATGCCACGGCTCTGT > REL606/1950004‑1950073
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tGCGTTCTGTTGCGTGACGCGATCCATTTCCGAAA.c < 1:7519719/36‑1 (MQ=255)
gCGTTCTGTTGCGTGACGCGATCCATTTCCGAAA.cc > 1:3050043/1‑36 (MQ=255)
gTTCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGc > 1:6799697/1‑36 (MQ=255)
gTTCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGc > 1:3929522/1‑36 (MQ=255)
ttCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGcc < 1:4523764/36‑1 (MQ=255)
ttCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGcc < 1:7746935/36‑1 (MQ=255)
tCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGCCa > 1:6591873/1‑36 (MQ=255)
gTTGCGTGACGCGATCCATTTCCGAAA.CCGCCAATg > 1:3763419/1‑36 (MQ=255)
ttGCGTGACGCGATCCATTTCCGAAA.CCGCCAATGc > 1:3545167/1‑36 (MQ=255)
tGCGTGACGCGATCCATTTCCGAAA.CCGCCAATGCg > 1:3240984/1‑36 (MQ=255)
tGCGTGACGCGATCCATTTCCGAAA.CCGCCAATGCg > 1:7688469/1‑36 (MQ=255)
gCGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGa > 1:3148459/1‑36 (MQ=255)
gCGCGACGCGA.CCAATTCCAAAACCCGCCAATGCGa < 1:3638578/36‑1 (MQ=2)
gttGACGCGATCCATTCCATAAC.CCGCCAATGCGAc < 1:3931553/34‑1 (MQ=12)
cGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGAc > 1:4205953/1‑36 (MQ=255)
cGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGAc > 1:424083/1‑36 (MQ=255)
cGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGAc > 1:7923445/1‑36 (MQ=255)
gTGACGCGATCCATTTCCGAAA.CCGCCAATGCGagt > 1:1470596/1‑34 (MQ=255)
gTGACGCGATCCATTTCCGAAA.CCGCCAATGCGACt > 1:3899148/1‑36 (MQ=255)
gTGACGCGATCCATTTCCGAAA.CCGCCAATGCGACt > 1:6646247/1‑36 (MQ=255)
gccgcgATCCATTCCCAAAA.CCGCCAATGCGACTTg < 1:1567619/34‑1 (MQ=25)
gACGCGATCCATTTCCGAAA.CCGCCAATGCGACTTg > 1:2651962/1‑36 (MQ=255)
cgcgATCCATTTCCGAAA.CCGCCAATGCGACTTGAt > 1:4223885/1‑36 (MQ=255)
gcgATCCATTTCCGAAA.CCGCCAATGCGACTTGATc > 1:6574187/1‑36 (MQ=255)
gcgATCCATTTCCGAAA.CCGCCAATGCGACTTGATc > 1:2449003/1‑36 (MQ=255)
gcgATCCATTTCCGAAA.CCGCCAATGCGACTTGATc > 1:2414850/1‑36 (MQ=255)
gcgATCCATTTCCGAAA.CCGCCAAGGCGACTTGATc > 1:2728438/1‑36 (MQ=255)
gcgATCCATTAACAAAC.CCGCCAATGCGACTTGATc < 1:5917081/36‑1 (MQ=16)
gaaaTCAATTACCAAAA.CCGCCAATGCGACTTGATc < 1:7201441/33‑1 (MQ=16)
cgATCCATTTCCGAAA.CCGCCAATGCGACTTGATCg > 1:4633571/1‑36 (MQ=255)
gATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGa > 1:4104024/1‑36 (MQ=255)
gATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGa > 1:833388/1‑36 (MQ=255)
gATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGa > 1:3683562/1‑36 (MQ=255)
gATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGa > 1:305122/1‑36 (MQ=255)
aTCCATTTCCGAAA.CCGCCAATGCGACTTGATCGAt > 1:2223949/1‑36 (MQ=255)
aTCCATTTCCGAAA.CCGCCAATGCGACTTGATCGAt > 1:1756319/1‑36 (MQ=255)
tCCATTCCCAAAA.CCGCCAATGCGACTTGATCGATg < 1:496985/36‑1 (MQ=37)
tCCATTCCCAAAA.CCGCCAATGCGACTTGATCGATg < 1:7070692/36‑1 (MQ=37)
ccATTTCCGAAA.CCGCCAATGCGACTTGATCGATGc > 1:7381180/1‑36 (MQ=255)
ccATTTCCGAAA.CCGCCAATGCGACTTGATCGATGc > 1:123699/1‑36 (MQ=255)
cctttCCAAAACCCGCCAATGCGACTTGATCGATGc < 1:402091/34‑1 (MQ=21)
cATTTCCGAAA.CCGCCAATGCGACTTGATCGATGcc > 1:3400998/1‑36 (MQ=255)
cATTTCCGAAA.CCGCCAATGCGACTTGATCGATGcc > 1:7535001/1‑36 (MQ=255)
aTTTCCGAAA.CCGCCAATGCGACTTGATCGATGCCa > 1:2861858/1‑36 (MQ=255)
aTTTCCGAAA.CCGCCAATGCGACTTGATCGATGCCa > 1:2624280/1‑36 (MQ=255)
ttCCGAAA.CCGCCAATGCGACTTGATCGATGCCACg > 1:271325/1‑36 (MQ=255)
ccaaaa.CCGCCAATGCGACTTGATCGATGCCACGGc < 1:6175730/33‑1 (MQ=255)
ccGAAA.CCGCCAATGCGACTTGATCGATGCCACGGc < 1:7837919/36‑1 (MQ=255)
ccGAAA.CCGCCAATGCGACTTGATCGATGCCACGGc > 1:4124293/1‑36 (MQ=255)
cGAAA.CCGCCAATGCGACTTGATCGATGCCACGGct > 1:6349501/1‑36 (MQ=255)
cGAAA.CCGCCAATGCGACTTGATCGACGCCACGGct > 1:1184025/1‑36 (MQ=255)
gAAA.CCGCCAATGCGACTTGATCGATGCCACGGctc > 1:6574283/1‑36 (MQ=255)
gAAA.CCGCCAATGCGACTTGATCGATGCCACGGctc > 1:7744949/1‑36 (MQ=255)
gAAA.CCGCCAATGCGACTTGATCGATGCCACGGctc > 1:2397177/1‑36 (MQ=255)
aaaa.CCGCCAATGCGACTTGATCGATGCCACGGctc < 1:403232/35‑1 (MQ=255)
aaa.CCGCCAATGCGACTTGATCGATGCCACGGctct > 1:6049987/1‑36 (MQ=255)
aaa.CCGCCAATGCGACTTGATCGATGCCACGGctct > 1:5393895/1‑36 (MQ=255)
aaa.CCGCCAATGCGACTTGATCGATGCCACGGctct > 1:975886/1‑36 (MQ=255)
aa.CCGCCAATGCGACTTGATCGATGACACGGCTCTg > 1:978247/1‑36 (MQ=255)
a.CCGCCAATGCGACTTGATCGATGCCACGGCTCTGt > 1:4901159/1‑36 (MQ=255)
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TGCGTTCTGTTGCGTGACGCGATCCATTTCCGAAA.CCGCCAATGCGACTTGATCGATGCCACGGCTCTGT > REL606/1950004‑1950073
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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