Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 96.3% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)51 (0.900) 31/64 NT 96.2% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 2 (0.100)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =2 (0.040)54 (0.960) 37/64 NT 96.4% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 104 total aligned reads displayed.

CGTGTTTAACTGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506
                                   |                                   
cGTGTTTAACTGTCCAACTTTTTGGGG.TCAGTACAc                                    <  1:7173421‑M1/36‑2 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGG.TCAGTACAc                                    <  1:112907‑M1/36‑2 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGG.TCAGTACAc                                    <  1:6319603‑M1/36‑2 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGTG.TCAGTACAcc                                   >  1:4539152‑M1/1‑34 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAcc                                   <  1:454432‑M1/36‑3 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAcc                                   <  1:5642940‑M1/36‑3 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAcc                                   <  1:788619‑M1/36‑3 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAca                                   >  1:5904652‑M1/1‑34 (MQ=255)
 gtggTTAACTGTCCAACTTTTTGGGG.TCAGTACAct                                   >  1:6499955‑M1/1‑34 (MQ=255)
  tgtTTTACTGTCCAACTTTTTGGGG.TCAGTACAccc                                  <  1:3229238/36‑1 (MQ=255)
  tgtTTAACTGTCCAACTTTTTGGGT.TCAGTACAccc                                  >  1:1028692/1‑36 (MQ=255)
  tgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAccc                                  <  1:5734983/36‑1 (MQ=38)
  tgtTTAACTGTCCAACTTTTTGGGG.TCAGTACAccc                                  <  1:4564706/36‑1 (MQ=38)
   ttttaACTGTCCAACTTTTTGGGG.TCAGTACAccat                                 <  1:2806383‑M1/35‑5 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGG.TCAGTACACCCt                                 >  1:4525559/1‑36 (MQ=38)
    tttAACTGTCCAACTTTTTGGGG.TCAGTACAccatg                                >  1:6770482‑M1/1‑31 (MQ=255)
    tttAACTGTCCAACTTTTTGGGG.TCAGTACAccatg                                >  1:2317534‑M1/1‑31 (MQ=255)
    tttAACTGTCCAACTTTTTGGGG.TCAGTACAccatg                                <  1:487499‑M1/36‑6 (MQ=255)
    tttAACTGTCCAACTTTTTGGGG.TCAGTACAccatg                                >  1:8212271‑M1/1‑31 (MQ=255)
    tttAACTGTCCAACTTTTTGGGG.TCAGTACAccatg                                >  1:142557‑M1/1‑31 (MQ=255)
     ttAACTGTCCAACTTTTTGGGG.TCAGTACAccatgg                               >  1:8361593‑M1/1‑30 (MQ=255)
     ttAACTGTCCAACTTTTTGGGG.TCAGTACAccatgg                               <  1:7545518‑M1/36‑7 (MQ=255)
     ttAACTGTCCAACTTTTTGGGG.TCAGTACAccatgg                               <  1:2423211‑M1/36‑7 (MQ=255)
     ttAACTGTCCAACTTTTTGGGG.TCAGTACAccatgg                               <  1:1549133‑M1/36‑7 (MQ=255)
     ttAACTGTCCAACTTTTTGGGG.TCAGTACACCCTgg                               <  1:5592118/36‑1 (MQ=40)
      tAACTGTCCAACTTTTTGGGG.TCAGTACAccatgga                              >  1:6518121‑M1/1‑29 (MQ=255)
      tAACTGTCCAACTTGTTGGGG.TCAGTACAccatgga                              >  1:3311355‑M1/1‑29 (MQ=255)
       aaCTGTCCAACTTTTTGGGG.TCAGTACAccatggag                             >  1:6208939‑M1/1‑28 (MQ=255)
       aaCTGTCCAACTTTTTGGGG.TCAGTACACCCTgggg                             >  1:22599/1‑36 (MQ=255)
       aaCTGTCCAACTTTTTGGGG.TCAGTACACCCTgggg                             <  1:3776517/36‑1 (MQ=255)
        aCTGTCCAACTTTTTGGGG.TCAGTACAccatggagc                            >  1:2351307‑M1/1‑27 (MQ=255)
        aCTGTCCAACTTTTTGGGG.TCAGTACAccatggagc                            <  1:3533066‑M1/36‑10 (MQ=255)
        aCTGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGc                            <  1:3908976/36‑1 (MQ=255)
        aCTGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGc                            <  1:6318293/36‑1 (MQ=255)
        aCTGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGc                            <  1:6752128/36‑1 (MQ=255)
         cTGTCCAACTTTTTGGGG.TCAGTACAccatggagcc                           >  1:6026328‑M1/1‑26 (MQ=255)
          tGTCCAACTTTTTGGGG.TCAGTACAccatggagcca                          >  1:1379075‑M1/1‑25 (MQ=255)
          tGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTg                          >  1:7120827/1‑36 (MQ=255)
          tGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTg                          <  1:5582875/36‑1 (MQ=255)
          tGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTg                          <  1:1219009/36‑1 (MQ=255)
          tGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTg                          <  1:2674654/36‑1 (MQ=255)
           gTCCAACTTTTTGGGG.TCAGTACAccatggagccaa                         >  1:1602284‑M1/1‑24 (MQ=255)
            tCCAACTTTTTGGGG.TCAGTACAccatggagccaat                        >  1:69965‑M1/1‑23 (MQ=255)
            tCCAACTTTTTGGGG.TCAGTACAccatggagccaat                        >  1:3239650‑M1/1‑23 (MQ=255)
            tCCAACTTTTTGGGG.TCAGTACAccatggagccaat                        >  1:6000936‑M1/1‑23 (MQ=255)
              cAACTTTTTGGGG.TCAGTACAccatggagccaatac                      >  1:66789‑M1/1‑21 (MQ=255)
              cAACTTTTTGGGG.TCAGTACAccatggagccaatac                      >  1:5492795‑M1/1‑21 (MQ=255)
              cAACTTTTTGGGG.TCAGTACAccatggagccaatac                      >  1:5233535‑M1/1‑21 (MQ=255)
              cAACTTTTTGGGG.TCAGTACAccatggagccaatac                      <  1:5203168‑M1/36‑16 (MQ=255)
              cAACTTTTTGGGG.TCAGTACACCCTGGGGCTGCCAc                      <  1:3310772/36‑1 (MQ=255)
               aaCTTTTTGGGG.TCAGTACAccatggagccaatacc                     >  1:2176114‑M1/1‑20 (MQ=255)
               aaCTTTTTGGGG.TCAGTACAccatggagccaatacc                     <  1:3277937‑M1/36‑17 (MQ=255)
               aaCTTTTTGGGG.TCAGTACAccatggagccaatacc                     >  1:7984165‑M1/1‑20 (MQ=255)
               aaCTTTTTGGGG.TCAGTACACCCTGGGGCTGCCACt                     <  1:8327542/36‑1 (MQ=255)
               aaCTTTTTGGGG.TAAGTACAccatggagccaatacc                     <  1:4854135‑M1/36‑17 (MQ=255)
                aatttttGGGGTTGAGTACCCCCTGGGGCTGCCACt                     <  1:5870600/34‑1 (MQ=16)
                aCTTTTTGGGG.TCAGTACACCCTGGGGCTGCCACTc                    <  1:7765177/36‑1 (MQ=255)
                   ttttGGGG.TCAGTACAccatggagccaataccttta                 <  1:1290624‑M1/36‑21 (MQ=255)
                   ttttGGGG.TCAGTACAccatggagccaataccttta                 <  1:3915687‑M1/36‑21 (MQ=255)
                   ttttGGGG.TCAGTACACCCTGGGGCTGCCACTCCaa                 <  1:1465890/36‑1 (MQ=255)
                   ttttGGGG.TCAGTACACCCTGGGGCTGCCACTCCaa                 >  1:7039732/1‑36 (MQ=255)
                   ttttGGGG.TCAGTACACCCTGGGGCTGCCACTCCaa                 >  1:5739972/1‑36 (MQ=255)
                    tttGGGG.TCAGTACAccatggagccaatacctttaa                <  1:1789982‑M1/36‑22 (MQ=255)
                    tttGGGG.TCAGTACAccatggagccaatacctttaa                >  1:3264647‑M1/1‑15 (MQ=255)
                    tttGGGG.TCAGTACAccatggagccaatacctttaa                <  1:7462325‑M1/36‑22 (MQ=255)
                      tGGGG.TCAGTACACCCTGGGGCTGCCACTCCAAAcc              >  1:1048730/1‑36 (MQ=255)
                      tGGGG.TCAGTACACCCTGGGGCTGCCACTCCAAAcc              >  1:3558410/1‑36 (MQ=255)
                       gggg.TCAGTACAccatggagccaatacctttaaagc             >  1:2631667‑M1/1‑12 (MQ=255)
                        ggg.TCAGTACAccatggagccaatacctttaaagca            <  1:2648941‑M1/36‑26 (MQ=255)
                        ggg.TCAGTACAccatggagccaatacctttaaagca            <  1:6259013‑M1/36‑26 (MQ=255)
                        ggg.TCAGTACAccacggagccaatacctttaaagca            <  1:6685230‑M1/36‑26 (MQ=255)
                         gg.TCAGTACAccatggagccaatacctttatagcaa           >  1:2290399‑M1/1‑10 (MQ=255)
                         gg.TCAGTACAccatggagccaatacctttaaagcaa           >  1:2886011‑M1/1‑10 (MQ=255)
                         gg.TCAGTACACCCTGGGGCTGCCACTCCATGCCCGa           >  1:1097368/1‑36 (MQ=37)
                         gg.TCAGTACACCCTGGGGCTGCCACTCCAAACCCGa           >  1:6237921/1‑36 (MQ=255)
                         gg.TCAGTACACCCTGGGGCTGCCACTCCAAACCCGa           >  1:6502829/1‑36 (MQ=255)
                          g.TCAGTACAccatggagccaatacctttaaagcaaa          <  1:1450697‑M1/36‑28 (MQ=255)
                          g.TCAGTACACCCTGGGGCTGCCACTCCAAACCCGaa          >  1:3073975/1‑36 (MQ=255)
                            tCAGTACAccatggagccaatacctttaaagcaaac         >  1:6686219‑M1/1‑8 (MQ=255)
                             cAGTACAccatggagccaatacctttaaagcaaaca        >  1:4293151‑M1/1‑7 (MQ=255)
                             cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        <  1:621589/36‑1 (MQ=255)
                             cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        <  1:1800600/36‑1 (MQ=255)
                              aGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa       >  1:6040729/1‑36 (MQ=255)
                              aGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa       <  1:6859167/36‑1 (MQ=255)
                               gTACAccatggagccaatacctttaaagcaaacatg      <  1:8385343‑M1/36‑32 (MQ=255)
                               gTACAccatggagccaatacctttaaagcaaacatg      <  1:4727906‑M1/36‑32 (MQ=255)
                               gTACACCCTGGGGCTGCCACTCCAAACCCGAACAAt      >  1:3486385/1‑36 (MQ=255)
                                tACAccatggagccaatacctttaaagcaaacatgg     <  1:6610875‑M1/36‑33 (MQ=255)
                                tACAccatggagccaatacctttaaagcaaacatgg     >  1:882895‑M1/1‑4 (MQ=255)
                                 acaccatggagccaatacctttaaagcaaacatgga    >  1:3542250‑M1/1‑3 (MQ=255)
                                 acaccatggagccaatacctttaaagcaaacatgga    >  1:1834476‑M1/1‑3 (MQ=255)
                                 acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:3992694/1‑36 (MQ=255)
                                 acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:3124640/1‑36 (MQ=255)
                                  caccatggagccaatacctttaaagcaaacatggag   <  1:5487475‑M1/36‑35 (MQ=255)
                                  cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   <  1:6368258/36‑1 (MQ=255)
                                   accatggagccaatacctttaaagcaaacatggagg  >  1:577289‑M1/1‑1 (MQ=255)
                                   acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  <  1:6888445/36‑1 (MQ=255)
                                   acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:3808824/1‑36 (MQ=255)
                                   acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:2793662/1‑36 (MQ=255)
                                   acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:2195014/1‑36 (MQ=255)
                                   |                                   
CGTGTTTAACTGTCCAACTTTTTGGGG.TCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG