Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,440,342 | +G | 5.4% | coding (1308/1374 nt) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,440,342 | 1 | .→G | 5.4% | 4.0 ‑2.7 ‑0.1 | 37 | coding (1308/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (8/27): total (10/27) | ||||||||||
Fisher's exact test strand distribution p-value = 6.76e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.79e-01 |
CAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCAGAAACTGCTGGATGG > REL606/4440307‑4440377
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cAGCCTGGCGACCATATTCTGGTGATGAGCAAcggc < 1:4525394/36‑1 (MQ=255)
cAGCCTGGCGACCATATTCTGGTGATGAGCAAcggc > 1:653693/1‑36 (MQ=255)
aGCCTGGCGACCATATTCTGGTGATGAGCAAcggc.g < 1:3229390/36‑1 (MQ=255)
aGCCTGGCGACCATATTCTGGTGATGAGCAAcggc.g < 1:2429385/36‑1 (MQ=255)
aGCCTGGCGACCATATTCTGGTGATGAGCAAcggc.g > 1:6626210/1‑36 (MQ=255)
gCCTGGCGACCATATTCTGGTGATGAGCAAcggc.gg > 1:6492328/1‑36 (MQ=255)
gCCTGGCGACCATATTCTGGTGATGAGCAAcggc.gg > 1:774547/1‑36 (MQ=255)
ccTGGCGACCATATTCTGGTGATGAGCAACGGC.GGt < 1:2063630/36‑1 (MQ=255)
cTGGCGACCATATTCTGGTGATGAGCAACGGC.GGtt < 1:7180724/36‑1 (MQ=255)
cTGGCGACCATATTCTGGTGATGAGCAACGGC.GGtt > 1:6281798/1‑36 (MQ=255)
cTGGCGACCATATTCTGGTGATGAGCAACGGC.GGtt < 1:303977/36‑1 (MQ=255)
tGGCGACCATATTCTGGTGATGAGCAACGGC.GGttt < 1:4156664/36‑1 (MQ=255)
tGGCGACCATATTCTGGTGATGAGCAACGGC.GGgtt > 1:5607983/1‑36 (MQ=255)
tGGCGAACATATTCTGGTGATGAGCAACGGC.GGttt < 1:7706209/36‑1 (MQ=255)
ggCGACCATATTCTGGTGATGAGCAACGGC.GGtttt < 1:4583478/36‑1 (MQ=255)
gCGACCATATTCTGGTGATGAGCAACGGC.GGTTTtg < 1:283859/36‑1 (MQ=255)
cGACCATATTCTGGTGATGAGCAACGGC.GGgttttg > 1:721052/1‑34 (MQ=37)
cGACCATATTCTGGTGATGAGCAACGGC.GGTTTtgg < 1:1408789/36‑1 (MQ=255)
cGACCATATTCTGGTGATGAGCAACGGC.GGTTTtgg < 1:7705179/36‑1 (MQ=255)
cGACCATATTCTGGTGATGAGCAACGGC.GGTTTtgg < 1:2986212/36‑1 (MQ=255)
gACCATATTCTGGTGATGAGCAACGGC.GGTTTtggt < 1:1665054/36‑1 (MQ=255)
gACCATATTCTGGTGATGAGCAACGGC.GGGTTttgt > 1:103000/1‑36 (MQ=25)
aacATATTCTGGTGATGAGCAACGGC.GGTTTttgtg > 1:5894191/3‑36 (MQ=37)
ccATATTCTGGTGATGAGCAACGGC.GGTTTtggtgg < 1:2116424/36‑1 (MQ=255)
cATATTCTGGTGATGAGCAACGGC.GGTTTTGGTggg < 1:1255753/36‑1 (MQ=255)
atatTCTGGTGATGAGCAACGGCGGGTTTTGTTggg > 1:1055326/1‑36 (MQ=21)
atatTCTGGTGATGAGCAACGGC.GGTTTTGTTGGGa < 1:1887090/36‑1 (MQ=255)
atTCTGGTGATGAGCAACGGC.GGTTTTTTTgggggg > 1:7111667/1‑33 (MQ=21)
atTCTGGTGATGAGCAACGGC.GGTTTTGGTGGGATc < 1:3117370/36‑1 (MQ=255)
atTCGGGTGATGAGCAACGGC.GGGTTTTTTGGGGTc > 1:5690770/1‑36 (MQ=12)
tCTGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCa < 1:1724540/36‑1 (MQ=255)
tCTGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCa < 1:5781305/36‑1 (MQ=255)
cTGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCAt < 1:3330239/36‑1 (MQ=255)
tGGTGATGAGCAACGGCGGGTTTTGTTGGGTTcctt > 1:5719002/1‑34 (MQ=12)
tGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCATc < 1:5514048/36‑1 (MQ=255)
tGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCATc < 1:4685505/36‑1 (MQ=255)
ggTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCa < 1:5690195/36‑1 (MQ=255)
ggTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCa < 1:2923576/36‑1 (MQ=255)
ggTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCa < 1:725878/36‑1 (MQ=255)
ggTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCa < 1:730517/36‑1 (MQ=255)
gatgaGCAACGGC.GGTTTTGGTGGGATCCATCAGaa < 1:1165837/36‑1 (MQ=255)
atgaGCAACGGC.GGTTTTGGTGGGATCCATCAGaaa < 1:5037935/36‑1 (MQ=255)
gaGCAACGGC.GGTTTTGGTGGGATCCATCAGAAAct < 1:4816062/36‑1 (MQ=255)
gaGCAACGGC.GGGTTTTGTTGGGTTCATCAGaaaat > 1:2655300/1‑34 (MQ=9)
cggc.ggTTTTGGTGGGATCCATCAGAAACTGCTGGa < 1:2756361/36‑1 (MQ=255)
cggc.ggTTTTGGTGGGATCCATCAGAAACTGCTGGa < 1:6837305/36‑1 (MQ=255)
ggc.ggTTTTGGTGGGATCCATCAGAAACTGCTGGAt < 1:4825546/36‑1 (MQ=255)
c.ggTTTTGGTGGGATCCATCAGAAACTGCTGGATgg > 1:5630508/1‑36 (MQ=255)
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CAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC.GGTTTTGGTGGGATCCATCAGAAACTGCTGGATGG > REL606/4440307‑4440377
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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