New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 237270 (0.000)31 (0.550) 22/64 NT 100% noncoding (437/768 nt) IS1 repeat region
?REL606 = 666130 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 153 total aligned reads displayed.

GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCA  >  REL606/23692‑23757
                                   |                              
gtctaAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:6525854‑M1/34‑1 (MQ=255)
ggataaaTCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:7891583‑M1/33‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:953634‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:8053689‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:7803570‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:7523043‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:6204153‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:6028974‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:4649590‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:354382‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:3418962‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:3270548‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:3223570‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:2844299‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:278602‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:222362‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:1025966‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:1539463‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                <  1:1284069‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                >  1:1787500‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGATGTTTTACGCGTA                                >  1:50760‑M1/1‑36 (MQ=255)
 gataaATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6807252‑M1/34‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTTGCTGTTTTACGCGTAt                               <  1:4233763‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTTCGCGTAt                               >  1:7772213‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTATGCGTAt                               >  1:6932005‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACTCGTAt                               >  1:7607293‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGGGTAt                               >  1:1231823‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGGGTAt                               >  1:1684465‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:5019895‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:88046‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:5428780‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:5871999‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6125363‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:8527‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6211417‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6298735‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6306379‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:8407897‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6553309‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6636982‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:6892541‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:7733498‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:6940414‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:7443915‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:7481210‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:7500047‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:3288257‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:3252264‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:3718749‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:1832539‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:2108374‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:2615179‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:2470337‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               >  1:4345305‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:2355163‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:2350947‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:4960886‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGGAt                               >  1:7691801‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACCCGTAt                               >  1:45008‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGATGTTTTACGCGTAt                               <  1:7820006‑M1/36‑2 (MQ=255)
 gCTAAATCGCACCAGCGCTGGCTGTTTTACGCGTAt                               <  1:4755272‑M1/36‑2 (MQ=255)
 gCTAAAACGCGCCAGCGCTGGCTGTTTTACGCGTAt                               <  1:1772432‑M1/36‑2 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTATGCGTAtg                              >  1:1137536‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTAGGCGTAtg                              >  1:7303073‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtt                              >  1:5147111‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              >  1:8039065‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              >  1:1218370‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              <  1:8309681‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              >  1:8376787‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              <  1:2160940‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              >  1:6450833‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              <  1:1565834‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              >  1:4445936‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                              <  1:6362511‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTAtg                              >  1:1639169‑M1/1‑34 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACTCGTAtgg                             >  1:7794268‑M1/1‑33 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtta                             >  1:2305449‑M1/1‑33 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtta                             >  1:7197773‑M1/1‑33 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtgt                             <  1:249486‑M1/36‑4 (MQ=255)
    aaaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtgta                            <  1:1210858‑M1/36‑5 (MQ=255)
    aaaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtggc                            >  1:4177240‑M1/1‑32 (MQ=255)
     aaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtggca                           >  1:3377884‑M1/1‑31 (MQ=255)
      aTCGCGCCAGCGCTGGCTGTTTTACTCGTAtgtact                          >  1:1836217‑M1/1‑30 (MQ=255)
       tCGCGCCAGCGCTGGCTGTTTTACGCGTAtgtactg                         >  1:2313806‑M1/1‑29 (MQ=255)
        cgcgCCAGCGCTGGCTGTTTTACGCGTAtgtactga                        >  1:4969478‑M1/1‑28 (MQ=255)
        cgcgCCAGCGCTGGCTGTTTTACGCGTAtgtactga                        <  1:2830304‑M1/36‑9 (MQ=255)
        cgcgCCAGCGCTGGCTGTTTTACGCGTAtgtactga                        >  1:6021001‑M1/1‑28 (MQ=255)
            ccAGCGCTGGCTGTTTTTCGCGTAtgtactgacccc                    >  1:6098541‑M1/1‑24 (MQ=255)
            ccAGCGCTGGCTGTTTTACGCGTAtgtacttacccc                    >  1:8284507‑M1/1‑24 (MQ=255)
            ccAGCGCTGGCTGTTTTACGCGTAtgtactgacccc                    <  1:5732339‑M1/36‑13 (MQ=255)
              aGCGCTGGCTGTTTTACGCGTAtgcactgaccccaa                  >  1:7406886‑M1/1‑22 (MQ=255)
              aGCGCTGGCTGTTTTAAGCGTAtgtactgaccccaa                  >  1:7329919‑M1/1‑22 (MQ=255)
                     gctgTTTTACGCGTAtgtactgaccccaaaaagttg           >  1:6769514‑M1/1‑15 (MQ=255)
                        gTTTTACGCGTAtgtactgaccccaaaaagttggac        >  1:3732123‑M1/1‑12 (MQ=255)
                         ttttACGCGTAtgtactgaccccaaaaagttggaca       <  1:3865142‑M1/36‑26 (MQ=255)
                           ttACGCGTAtgtactgaccccaaaaagttggacagt     >  1:4532500‑M1/1‑9 (MQ=255)
                           ttACGCGTAtgtactgaccccaaaaagttggacagt     >  1:7961187‑M1/1‑9 (MQ=255)
                           ttACGCGTAtgtactgaccccaaaaagttggacagt     >  1:7695609‑M1/1‑9 (MQ=255)
                              cgcgTAtgtactgaccccaaaaagttggacagttaa  >  1:4016436‑M1/1‑6 (MQ=255)
                              cgcgTAtgtactgaccacaaaaagttggacagttaa  <  1:5368482‑M1/36‑31 (MQ=255)
                                   |                              
GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCA  >  REL606/23692‑23757

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG