Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,485,453 | 0 | A→G | 7.9% | 0.8 ‑6.0 0.0 | 74 | 582 | ydcV | predicted spermidine/putrescine transporter subunit |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (7/0): ref base (26/41): total (33/41) | ||||||||||
Fisher's exact test strand distribution p-value = 2.37e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TTGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAATCAT > REL606/1485418‑1485488
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ttGCCGAATCTCAGTTCGGCGTTACTGGCAggagga > 1:4089511/1‑36 (MQ=255)
ttGCCGAATCTCAGTTCGGCGTTACTGGCAggagga > 1:3617990/1‑36 (MQ=255)
ttGCCGAATCTCAGTTCGGCGTTACTGGCAggagga < 1:4536912/36‑1 (MQ=255)
tGCCGAATCTCAGTTCGGGGTTACTGGCAGGAGGaa < 1:52834/36‑1 (MQ=255)
tGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGaa < 1:2537028/36‑1 (MQ=255)
tGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGaa < 1:6337051/36‑1 (MQ=255)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGGAt > 1:2086991/1‑36 (MQ=255)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAAt < 1:5267661/36‑1 (MQ=255)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAAt < 1:6604619/36‑1 (MQ=255)
ccGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATg < 1:5245128/36‑1 (MQ=255)
ccGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATg < 1:2166469/36‑1 (MQ=255)
ccGAATCTCAGTGCGGCGTTACTTGCAGGAGGGATg > 1:4184169/1‑36 (MQ=25)
cGAATCTCAGTTCGGCGTTACTGGCAGGGGGGATGc > 1:4024746/1‑36 (MQ=37)
cGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGc > 1:2749110/1‑36 (MQ=255)
cGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGc > 1:6804658/1‑36 (MQ=255)
gAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCt < 1:4365832/36‑1 (MQ=255)
gAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCt < 1:7159254/36‑1 (MQ=255)
gAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCt > 1:294494/1‑36 (MQ=255)
gAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCt > 1:581312/1‑36 (MQ=255)
gAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCt < 1:1981544/36‑1 (MQ=255)
aaTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTg < 1:4354205/36‑1 (MQ=255)
aaTCTCAGTTCGGCGTTACGGGCAGGAGGGATGcgg > 1:5886424/1‑34 (MQ=37)
aTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTgg > 1:7457379/1‑36 (MQ=255)
aTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTgg < 1:7135393/36‑1 (MQ=255)
aTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTgg < 1:4838068/36‑1 (MQ=255)
aTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTgg > 1:2003941/1‑36 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTggg > 1:5372467/1‑35 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc > 1:1155337/1‑36 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc < 1:3554517/36‑1 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc < 1:1282649/36‑1 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc < 1:5050718/36‑1 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc < 1:5603867/36‑1 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc < 1:1496219/36‑1 (MQ=255)
ctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCg < 1:4177523/36‑1 (MQ=255)
tcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGt < 1:476620/36‑1 (MQ=255)
tcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGt < 1:7213818/36‑1 (MQ=255)
tcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGt > 1:6728063/1‑36 (MQ=255)
cAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGtt < 1:502917/36‑1 (MQ=255)
cAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGtt < 1:3422084/36‑1 (MQ=255)
aGTTCGGCGTTACTGGCAGGAGGGAAGGTGGCGttt > 1:7063368/1‑36 (MQ=25)
aGTTCGGCGTTACTGGCAGGAGGAATGCTGNGGttt > 1:6047384/1‑36 (MQ=255)
aGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGttt < 1:5406395/36‑1 (MQ=255)
aGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGttt < 1:5904321/36‑1 (MQ=255)
gTTCGGCGTTACTGGCAGGAGGAATGCTGGCGtttt > 1:5031701/1‑35 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGttttc > 1:5617397/1‑34 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:1427370/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc > 1:4332662/1‑36 (MQ=255)
cGGCGTTACTGGCAGGGGGGATGGCGGGGTTTTCCt > 1:3112235/1‑36 (MQ=9)
cGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCt < 1:6997117/36‑1 (MQ=255)
ggCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCtt > 1:1500894/1‑36 (MQ=255)
ggCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCtt < 1:5643769/36‑1 (MQ=255)
ggCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCtt < 1:5809696/36‑1 (MQ=255)
gCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTg > 1:6942044/1‑36 (MQ=255)
gCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTg < 1:5613100/36‑1 (MQ=255)
cGTTACTGGCAGGAGGGATGCTGGCGTTTGGCTTGt > 1:4920544/1‑36 (MQ=37)
cGTTACTGGCAGGAGGAATGCTNGCGTTTGCCTTGt < 1:4369789/36‑1 (MQ=255)
cGTTACTGGCAGGAGGAATGCTGGCGTTTTCCTTGt > 1:6273208/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTTTc > 1:1269236/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc < 1:5208655/36‑1 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc < 1:7232259/36‑1 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc < 1:1368337/36‑1 (MQ=255)
ttACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCg < 1:2894199/36‑1 (MQ=255)
ttACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCg < 1:2323906/36‑1 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGtt > 1:2776462/1‑36 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGtt < 1:5898360/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:789238/36‑1 (MQ=255)
tGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCg > 1:3177711/1‑36 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:60356/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:3782152/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGCTCGa < 1:1657675/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTAGTTCGa > 1:5043109/1‑36 (MQ=255)
ggCAGGAGGAATGCTGGCGNTTGCCTTGTCGTTCGa > 1:2151540/1‑36 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt > 1:4383805/1‑36 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt > 1:3283846/1‑36 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATgc > 1:4943216/1‑35 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:5854287/36‑1 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:5230549/36‑1 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa > 1:629471/1‑36 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:1527272/36‑1 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTAGTTCGGTGa > 1:1183961/1‑36 (MQ=37)
ggaggaATGCTGGCGTTTGCCTTGTGGTGCGATgga > 1:6314857/1‑34 (MQ=25)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:4881872/1‑36 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa < 1:4168350/36‑1 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:574943/1‑36 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:5246421/1‑36 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:712410/1‑36 (MQ=255)
gaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaaa > 1:228495/1‑36 (MQ=255)
aggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAat > 1:7465793/1‑36 (MQ=255)
aggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAat > 1:2133624/1‑36 (MQ=255)
ggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatc > 1:7028409/1‑36 (MQ=255)
ggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatc > 1:3070716/1‑36 (MQ=255)
ggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatc > 1:1783935/1‑36 (MQ=255)
gaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatca > 1:3136885/1‑36 (MQ=255)
gaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatca > 1:4703194/1‑36 (MQ=255)
gaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatca > 1:1633562/1‑36 (MQ=255)
gaATGCTGGCGTTTGCCTTGTCGTTCGATGAAatca > 1:355852/1‑36 (MQ=255)
gaATGCTGGCGTTTGCCTTGTCGTGCGATGAAatca < 1:381947/36‑1 (MQ=255)
aaTGCTGGCGTTTGCCTTGTCGTTCGATGAAatcat > 1:6917730/1‑36 (MQ=255)
aaTGCTGGCGTTTGCCTTGTCGTTCGATGAAatcat > 1:1770803/1‑36 (MQ=255)
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TTGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAATCAT > REL606/1485418‑1485488
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 23 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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