New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 237270 (0.000)31 (0.550) 22/64 NT 100% noncoding (437/768 nt) IS1 repeat region
?REL606 = 666130 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG.............................  >  REL606/23692‑23727
...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  REL606/666130‑666100
                                                                   
   TAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGT                              <  1:249486/36‑1 (MQ=255)
    AAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTA                             <  1:1210858/36‑1 (MQ=255)
      ATCGCGCCAGCGCTGGCTGTTTTACTCGTATGTACT                           >  1:1836217/1‑36 (MQ=255)
      ATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTACT                           <  1:1580379/36‑1 (MQ=255)
       TCGCGCCAGCGCTGGCTGTTTTACGCGTATGTACTG                          >  1:2313806/1‑36 (MQ=255)
        CGCGCCAGCGCTGGCTGTTTTACGCGTATGTACTGA                         >  1:6021001/1‑36 (MQ=255)
        CGCGCCAGCGCTGGCTGTTTTACGCGTATGTACTGA                         <  1:2830304/36‑1 (MQ=255)
        CGCGCCAGCGCTGGCTGTTTTACGCGTATGTACTGA                         >  1:4969478/1‑36 (MQ=255)
          CGCCAGCGCTGGCTGTTTTACGCGTATGTACTGACC                       >  1:883393/1‑36 (MQ=38)
           GCCAGCGCTGGCTGTTTTACGCGTATGTACTGACCC                      <  1:5915294/36‑1 (MQ=35)
            CCAGCGCTGGCTGTTTTTCGCGTATGTACTGACCCC                     >  1:6098541/1‑36 (MQ=12)
            CCAGCGCTGGCTGTTTTACGCGTATGTACTTACCCC                     >  1:8284507/1‑36 (MQ=12)
            CCAGCGCTGGCTGTTTTACGCGTATGTACTGACCCC                     <  1:5732339/36‑1 (MQ=32)
              AGCGCTGGCTGTTTTACGCGTATGCACTGACCCCAA                   >  1:7406886/1‑36 (MQ=0)
              AGCGCTGGCTGTTTTAAGCGTATGTACTGACCCCAA                   >  1:7329919/1‑36 (MQ=0)
                CGCTGGCTGTTTTACTCGTATGTACTGACCCCAAAA                 <  1:5223287/36‑1 (MQ=0)
                 GCTGGCTGTTTTACGCGTATGTACTTACCCCAAAAA                >  1:8358248/1‑36 (MQ=0)
                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTc            <  1:7521257/36‑2 (MQ=1)
                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG            >  1:6769514/1‑36 (MQ=1)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:3732123/1‑36 (MQ=1)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:6831255/1‑36 (MQ=1)
                         TTTTACGCGTATGTACTGACCCCAAAAAGTTGGACA        <  1:3865142/36‑1 (MQ=1)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:456730/1‑36 (MQ=1)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:4532500/1‑36 (MQ=1)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:7695609/1‑36 (MQ=1)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:7961187/1‑36 (MQ=1)
                             ACGCGTATGTACTGACCCCAAAAAGTTGGACAGTTA    >  1:1830227/1‑36 (MQ=1)
                              CGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAA   <  1:7369644/36‑1 (MQ=1)
                              CGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAA   >  1:4016436/1‑36 (MQ=1)
                              CGCGTATGTACTGACCACAAAAAGTTGGACAGTTAA   <  1:5368482/36‑1 (MQ=0)
                               GCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  1:1463252/36‑1 (MQ=1)
                                                                   
GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG.............................  >  REL606/23692‑23727
...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  REL606/666130‑666100

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG