New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1199793 =65 (1.240)9 (0.170) 8/64 NT 12.8% coding (22/828 nt) potB spermidine/putrescine ABC transporter membrane protein
?REL606 = 1588685 58 (1.010)coding (219/900 nt) eamA cysteine and O‑acetyl‑L‑serine efflux system

GCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAG  >  REL606/1588651‑1588720
                                  |                                   
gCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAa                                    <  1:6636090‑M2/36‑2 (MQ=255)
 cATACCGAAGTTAATGGCACAAAAAAGAAAAGCAaa                                   <  1:5620731‑M2/36‑3 (MQ=255)
 cATACCGAAGTTAATGGCAAAAAAAAGAAAAGCAaa                                   >  1:2544432‑M2/1‑34 (MQ=255)
  aTACCGAAGTTAATGGCACAAAAAAGAAAAGCAaac                                  >  1:7080854‑M2/1‑33 (MQ=255)
  aTACCGAAGTTAATGGCACAAAAAAGAAAAGCAaac                                  >  1:2731714‑M2/1‑33 (MQ=255)
  aTACCGAAGTTAATGGCACAAAAAAGAAAAGCAaac                                  <  1:136986‑M2/36‑4 (MQ=255)
   tACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACt                                 >  1:3159803/1‑36 (MQ=255)
    aCCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTg                                <  1:6669187/36‑1 (MQ=255)
     ccGAAGTTAATGGCACAAAAAAGAAAAGCAAACTgc                               >  1:5534349/1‑36 (MQ=255)
      cGAAGTTAATGGCACAAAAAAGAAAAGCAAACTgcg                              >  1:3459308/1‑36 (MQ=255)
       gAAGTTAATGGCACAAAAAAGAAAAGCAAACTgcgc                             >  1:3706765/1‑36 (MQ=255)
       gAAGTTAATGGCACAAAAAAGAAAAGCAAACTgcgc                             >  1:2864992/1‑36 (MQ=255)
       gAAGTTAATGGCACAAAAAAGAAAAGCAAACTgcgc                             >  1:4225008/1‑36 (MQ=255)
        aaGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCa                            >  1:762298/1‑36 (MQ=255)
          gTTAATGGCACAAAAAAGAAAAGCAAACTGCGCaaa                          >  1:7465154/1‑36 (MQ=255)
          gTTAATGGAAAAAAAAAGAAAAGCAAACTGCGCaaa                          <  1:589700/36‑1 (MQ=37)
           ttAGTGGAACAAAAAAGAAAAGCAAACTGCGCaaaa                         <  1:5932682/36‑1 (MQ=37)
           ttAATGGCACAAAAAAGAAAAGCAAACTGCGCaaaa                         >  1:4494198/1‑36 (MQ=255)
           ttAATGGCACAAAAAAGAAAAGCAAACTGCGCaaaa                         >  1:6961531/1‑36 (MQ=255)
            tAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAAc                        <  1:6702324/36‑1 (MQ=255)
            tAATGGCAAAAAAAAGAAAATCAAACTGCGCAAAAc                        <  1:1178945/36‑1 (MQ=37)
             aaTGGCACAAAAAAGACAAGCAGACTGCGCAAAACt                       <  1:2646830/36‑1 (MQ=37)
             aaTGGCACAAAAAAGAAAAGCAAACTGCGCAAAACt                       >  1:2344841/1‑36 (MQ=255)
             aaTGGAAAAAAAAAGAAAAGCAAACTGCGCAAAACt                       <  1:145157/36‑1 (MQ=37)
              aTGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTg                      >  1:4877453/1‑36 (MQ=255)
               tGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGa                     >  1:1092334/1‑36 (MQ=255)
               tGGCAAAAAAAAGAAATGCAAAGTGCGCAAAACTGa                     <  1:2657175/36‑1 (MQ=25)
                ggCACAAAAAAGAAAAGCAAACTGCGCAAAACTGAt                    >  1:2453296/1‑36 (MQ=255)
                ggCACAAAAAAGAAAAGCAAACTGCGCAAAACTGAt                    <  1:3273574/36‑1 (MQ=255)
                agCACAAAAAAGAAAAGCAAACTGCGCAAAACTGAt                    <  1:6060467/35‑1 (MQ=255)
                 gCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATg                   >  1:1071346/1‑36 (MQ=255)
                 gCAAAAAAAAGAAAAGCAAACTGCGCAAAACTGATg                   <  1:5057959/36‑1 (MQ=255)
                   acaAAAAAGAAAAGCAAACTGCGCAAAACTGATGGt                 <  1:5179042/36‑1 (MQ=255)
                    aaaaaaaGAAAAGCAAACTGCGCAAAACTGATGGtt                <  1:4286744/35‑1 (MQ=255)
                     aaaaaaGAAAAGCAAACTGCGCAAAACTGATGGTTa               <  1:7410883/36‑1 (MQ=255)
                     aaaaaaGAAAAGCAAACTGCGCAAAACTGATGGTTa               >  1:5175214/1‑36 (MQ=255)
                     aaaaaaAAAAAGCAaaccgacaatagtgacaatcac               >  1:7014597‑M2/1‑14 (MQ=255)
                      aaaaaGAAAAGCAAACTGCGCAAAACTGATGGTTaa              >  1:1264901/1‑36 (MQ=255)
                      aaaaaAAAAAGCAaaccgacaatagtgacaatcact              >  1:1476770‑M2/1‑13 (MQ=255)
                       aaaagaaaagCAAACTGCGCAAAACTGATGGTTAAt             >  1:5902728/1‑36 (MQ=255)
                       aaaagaaaagCAAACTGCGCAAAACTGATGGTTAAt             >  1:5979951/1‑36 (MQ=255)
                       aaaagaaaagCAAACTGCGCAAAACTGATGGTTAAt             >  1:5008021/1‑36 (MQ=255)
                       aaaagaaaagCAAACTGCGCAAAACTGATGGTTAAt             <  1:2195206/36‑1 (MQ=255)
                       aaaagaaaagCAAACTGCGAAAAACTGATGGCTAAt             >  1:4774009/1‑36 (MQ=25)
                       aaaaaaaaagCAaaccgacaatagtgacaatcacta             >  1:1516805‑M2/1‑12 (MQ=255)
                         aagaaaagCAAACTGCGCAAAACTGATGGTTAATcc           <  1:6426094/36‑1 (MQ=255)
                         aagaaaagCAAACTGCGCAAAACTGATGGTTAATcc           <  1:3280238/36‑1 (MQ=255)
                          agaaaagCAAACTGCGCAAAACTGATGGTTAATCCa          >  1:6466656/1‑36 (MQ=255)
                          agaaaagCAAACTGCGCAAAACTGATGGTTAATCCa          <  1:112690/36‑1 (MQ=255)
                           gaaaagCAAACTGCGCAAAACTGATGGTTAATCCAt         <  1:3415260/36‑1 (MQ=255)
                           gaaaagCAAACTGCGCAAAACTGATGGTTAATCCAt         <  1:84339/36‑1 (MQ=255)
                           aacaagcaaaccgacaatagtgacaatcactacatt         >  1:1179389‑M2/4‑8 (MQ=255)
                            aaaagCAAACTTCGCAAAACTGGTGGTTAATCCATa        <  1:5532264/36‑1 (MQ=38)
                            aaaagCAAACTGCGCAAAACTGATGGTTAATCCATa        >  1:2348628/1‑36 (MQ=255)
                            aaaagCAAACTGCGCAAAACTGATGGTTAATCCATa        >  1:1328885/1‑36 (MQ=255)
                              aagCAaaccgacaatagtgacaatcactacattctg      >  1:2614732‑M2/1‑5 (MQ=255)
                              aagCAAACTGCGCAAAACTGATGGTTAATCCATAcc      <  1:6462657/36‑1 (MQ=255)
                              aagCAAACTGCGCAAAACTGATGGTTAATCCATAcc      >  1:6046585/1‑36 (MQ=255)
                              aagCAAACTGCGCAAAACTGATGGTTAATCCATAcc      >  1:5397759/1‑36 (MQ=255)
                              aagCAAACTGCGCAAAACTGATGGTTAATCCATAcc      >  1:5642417/1‑36 (MQ=255)
                              aagCAAACTGCGCAAAACTGATGGTTAATCCATAcc      <  1:2089609/36‑1 (MQ=255)
                               agCAaaccgacaatagtgacaatcactacattctgg     >  1:4819509‑M2/1‑4 (MQ=255)
                                gCAaaccgacaatagagacaatcactacattctgga    >  1:2529392‑M2/1‑3 (MQ=255)
                                gCAAACTGCGCAAAACTGATGGTTAATCCATAcccc    >  1:5275452/1‑36 (MQ=255)
                                gCAAACTGCGCAAAACTGATGGTTAATCCATAcccc    >  1:2145455/1‑36 (MQ=255)
                                gCAAACTGCGCAAAACTGATGGTTAATCCATAcccc    <  1:6716003/36‑1 (MQ=255)
                                 cAaaccgacaatagtgacaatcactacattctggaa   >  1:1098638‑M2/1‑2 (MQ=255)
                                 cAAACTGCGCAAAACTGATGGTTAATCCATACCCca   >  1:6892904/1‑36 (MQ=255)
                                 cAAACTGCGCAAAACTGATGGTTAATCCATACCCca   <  1:5501502/36‑1 (MQ=255)
                                 cAAACTGCGCAAAACTGATGGTTAATCCATACCCca   <  1:453131/36‑1 (MQ=255)
                                 cAAACTGCGCAAAACTGATGGTTAATCCATACCCca   >  1:2830033/1‑36 (MQ=255)
                                  aaaccgacaatagtgacaatcactacattctggaac  >  1:286078‑M2/1‑1 (MQ=255)
                                  aaaCTGCGCAAAACTGATGGTTAATCCATACCCcag  >  1:905734/1‑36 (MQ=255)
                                  |                                   
GCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAG  >  REL606/1588651‑1588720

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG