Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 996,989 | A→T | 10.0% | Y1191F (TAT→TTT) | mukB → | cell division protein MukB |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 996,989 | 0 | A→T | 10.0% | 2.9 ‑4.5 ‑0.0 | 40 | 3572 | mukB | cell division protein MukB |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (10/26): total (14/26) | ||||||||||
Fisher's exact test strand distribution p-value = 1.10e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.51e-01 |
GGAGCGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGCATCTGCGTGAACGTATTCGTCAGGATATTA > REL606/996957‑997024
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ggAGCGTAAAATTCAGTTCTTCGTGGCGGTTTATCa < 1:2348382/36‑1 (MQ=255)
aGCGTAAAATTCAGTTCTTCGTGGCGGTTTTTTAGc > 1:1354969/1‑36 (MQ=37)
aGCGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGc < 1:5897263/36‑1 (MQ=255)
aGCGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGc < 1:1930887/36‑1 (MQ=255)
cGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGCAt < 1:5040643/36‑1 (MQ=255)
cGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGCAt < 1:6457368/36‑1 (MQ=255)
gTAAAATTCAGTTCTTCGTGGCGGTTTATCAGCATc < 1:2953354/36‑1 (MQ=255)
tAAAATTCAGTTCTTCGTGGCGGTTTATCAGCATCt < 1:4453239/36‑1 (MQ=255)
aaaaTTCAGTTCTTCGTGGCGGTTTATCAGCATCTg < 1:4105752/36‑1 (MQ=255)
ttCAGTTCTTCGTGGCGGTTTTTTAGCCTTTTCGTg > 1:2107048/1‑36 (MQ=16)
ttCAGTTCTTCGTGGCGGTTTATCAGCATCTGCgag < 1:5855980/36‑3 (MQ=255)
ttCAGTTCTTCGTGGCGGTTTATCAGCATCTGCGTg < 1:486018/36‑1 (MQ=255)
tCAGTTCTTCGTGGCGGTTTATCAGCATCTGCGTGa < 1:6651987/36‑1 (MQ=255)
aGTTCTTCGTGGCGGTTTATCAGCATCTGCGTGAAc < 1:7295931/36‑1 (MQ=255)
aGTTCTTCGTGGCGGTTTATCAGCATCTGCGTGAAc < 1:382250/36‑1 (MQ=255)
gTTCTTCGTGGCGGTTTATCAGCATCTGCGTGAACg < 1:1187474/36‑1 (MQ=255)
ttcttcGTGGCGGTTTATCAGCATCTGCGTGAACGt < 1:7484111/36‑1 (MQ=255)
ttcttcGTGGCGGGTTTTTATCATTTGCGTGGACGt > 1:5493091/1‑36 (MQ=9)
tcttcGTGGCGGTTTTTTATCATCTTCGTGAACGTa > 1:5327630/1‑36 (MQ=19)
tcGTGGCGGTTTATCAGCATCTGCGTGAACGTATTc < 1:3893041/36‑1 (MQ=255)
cGTGGCGGTTTATCAGCATCTGCTTGAACGTATTCg < 1:1807914/36‑1 (MQ=255)
agTGGCGTTTTATCAGCATCTGCTTGAACGTATTCg < 1:3364419/35‑1 (MQ=25)
ggggCGGTTTAGCAGCATCTGCGGGAACGTATTCGt < 1:3403747/34‑1 (MQ=37)
tGGCGGTTTATCAGCATCTGCGTGAACGTATTCGTc < 1:3338931/36‑1 (MQ=255)
ggCGGTTTATCAGCATCTGCGTTAACGTATTCGTCa > 1:2794877/1‑36 (MQ=255)
ggCGGTTTATCAGCATCTGCGTGAACGTATTCGTCa < 1:1092624/36‑1 (MQ=255)
ggCAGTTTATCAGCATCTGCGTGAACGTATTCGTCa < 1:859395/36‑1 (MQ=255)
cGGTTTATCAGCATCTGCGTGAACGTATTCGTCAgg < 1:2355908/36‑1 (MQ=255)
cGGTTTATCAGCATCTGCGTGAACGTATTCGTAAgg > 1:3684118/1‑36 (MQ=255)
ggTTTATCAGCATCTGCGTGAACGTATTCGTCAGGa > 1:7588501/1‑36 (MQ=255)
gTTTATCAGCATCTGCGTGAACGTATTCGTCAGGat < 1:5359645/36‑1 (MQ=255)
gTTTATCAGCATCTGCGTGAACGTATTCGTCAGGat < 1:6130110/36‑1 (MQ=255)
tttATCAGCATCTGCGTGAACGTATTCGTCAGGata > 1:2636443/1‑36 (MQ=255)
tttATCAGCATCTGCGTGAACGTATTCGTCAGGata > 1:3279918/1‑36 (MQ=255)
tttATCAGCATCTGCGTGAACGTATTCGTCAGGata > 1:4510313/1‑36 (MQ=255)
tttATCAGCATCTGCGCGAACGTATTCGTCAGGata > 1:1003693/1‑36 (MQ=255)
ttATCAGCATCTGCGTGAACGTATTCGTCAGGatat > 1:3434910/1‑36 (MQ=255)
tATCAGCATCTGCGTGAACGTATTCGTCAGGAtatt > 1:6076571/1‑36 (MQ=255)
tATCAGCATCTGCGTGAACGTATTCGTCAGGAtatt > 1:7007043/1‑36 (MQ=255)
tATCAGCATCTGCGTGAACGTATTCGTCAGGAtatt < 1:7495454/36‑1 (MQ=255)
aTCAGCCTCTGCGTGAACGTATTCGTCAGGAtatta < 1:1551699/36‑1 (MQ=255)
aTCAGCATCTGCGTGAACGTATTCGTCAGGAtatta < 1:4054229/36‑1 (MQ=255)
aTCAGCATCTGCGTGAACGTATTCGTCAGGAtatta > 1:158237/1‑36 (MQ=255)
aTCAGCATCTGCGTGAACGTATTCGTCAGGAtatta < 1:1002630/36‑1 (MQ=255)
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GGAGCGTAAAATTCAGTTCTTCGTGGCGGTTTATCAGCATCTGCGTGAACGTATTCGTCAGGATATTA > REL606/996957‑997024
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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