New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3995530 =46 (0.870)10 (0.190) 4/60 NT 17.7% coding (58/768 nt) ECB_03724 putative transcriptional regulator
?REL606 = 4141016 47 (0.760)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

ACCACCGCAGGCGCACAAACGTTATTACGTGGACTGGCGG.............  <  REL606/3995569‑3995530
...................................GGCGGGTTTTTTCTTTTT  <  REL606/4141016‑4141004
                                                     
     CGCAGGCGCACAAACGTTATTACGTGGACTGGCGGG              >  1:3603617/1‑36 (MQ=1)
     CGCAGGCGCACAAACGTTATTACGTGGACTGGCGGG              >  1:5758017/1‑36 (MQ=1)
          GCGCACAAACGTTATTACGTGGACTGGCGGTTTTTT         >  1:7673818/1‑36 (MQ=38)
          GCGCACAAACGTTATTACGTGGACTGGCGGGTGTTT         >  1:3196237/1‑36 (MQ=255)
            GCACAAACGTTATTACGTGGACTGGCGGGTTTTTTt       >  1:31253/1‑35 (MQ=25)
            GCACAAACGTTATTACGTGGACTGGCGGGGTTTTTt       >  1:6322589/1‑35 (MQ=40)
                AAACGTTATTACGTGGACTGGCGGGTTTTTTTTTTT   >  1:1408672/1‑36 (MQ=255)
                AAACGTTATTACGTGGACTGGCGGGTTTTTTTTTTT   >  1:3633073/1‑36 (MQ=255)
                 AACGTTATTACGTGGACTGGCGGGTTTTTTTTTTTT  >  1:3203353/1‑36 (MQ=255)
                 AACGTTATTACGTGGACTGGCGGGTTTTTTTTTTTT  >  1:6205237/1‑36 (MQ=255)
                                                     
ACCACCGCAGGCGCACAAACGTTATTACGTGGACTGGCGG.............  <  REL606/3995569‑3995530
...................................GGCGGGTTTTTTCTTTTT  <  REL606/4141016‑4141004

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG