Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,125,281 | G→T | 13.8% | G80C (GGT→TGT) | yqiJ → | predicted inner membrane protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,125,281 | 0 | G→T | 13.8% | 3.1 ‑3.6 0.0 | 57 | 238 | yqiJ | predicted inner membrane protein |
Reads supporting (aligned to +/- strand): new base (8/1): ref base (22/26): total (30/27) | ||||||||||
Fisher's exact test strand distribution p-value = 2.71e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTCTCGTCGTTCTCTGCTTACTGGCTGGTTTTTTTGGTCTTATTGGCATCCTGTTGCAGCATGCCTGCATC > REL606/3125246‑3125316
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ctctCGTCGTTCTCTGCTTACTGGCTGGTTTTTTTg < 1:1915679/36‑1 (MQ=255)
tcgtcgTTCTCTGCTTACTGGCTGGTTTTTTTGGTc < 1:2124735/36‑1 (MQ=255)
cgtcgtTCTCTGCTTCCTGGCTGGTTTTTTTGGTCt < 1:5920552/36‑1 (MQ=255)
gtcgtTCTCTGCTTACTGGCTGGTTTTTTTTGTTtt > 1:2825017/1‑36 (MQ=25)
gtcgtTCTCTGCTTACTGGCTGGTTTTTTTTGTCtt > 1:4169639/1‑36 (MQ=255)
gtcgtTCTCTGCTTACTGGCTGGTTTTTTTGGTCtt < 1:842607/36‑1 (MQ=255)
gtcgtTCTCTGCTTACTGGCTGGTTTTTTTGGTCtt < 1:1762577/36‑1 (MQ=255)
gtcgtTCTCTGCTTACTGGCTGGTTTTTTTGGTCtt < 1:2302879/36‑1 (MQ=255)
gacgtTCTCTGCTTACTGGCTGGCTTTTTTTGTTtt > 1:5388147/3‑36 (MQ=21)
tcgtTCCCTGCTTACTGGCTGGTTTTTTTGGTCTTa < 1:5407041/36‑1 (MQ=255)
cgtTCTCTGCTTACTGGCTGGTTTTTTTGGTCTTAt < 1:5711313/36‑1 (MQ=255)
gtTCTCTGCTTACTGGCTGGTTTTTTTTGTCTTAtt > 1:2106672/1‑36 (MQ=255)
gtTCTCTGCTTACTGGCTGGTTTTTTTGGTCTTAtt < 1:1392784/36‑1 (MQ=255)
gtTCTCTGCTTACTGGCTGGGTTTTTTTGTCTTTtt > 1:2272826/1‑36 (MQ=25)
tctcTGCTTACTGGCTGGTTTTTTTTGTTTTAtttt > 1:4892071/1‑34 (MQ=21)
ctctGCTTACTGGCTGGTTTTTTTGGTCTTATTGGc < 1:2705604/36‑1 (MQ=255)
tctGCTTACTGGCTGGTTTTTTTTGTCTTATTTGcc > 1:2090690/1‑35 (MQ=25)
tGCTTACTGGCTGGTTTTTTTGGTCTTATTTGCATc > 1:2273981/1‑36 (MQ=255)
tGCTTACTGGCTGGTTTTTTTGGTCTTATTGGCATc < 1:4935921/36‑1 (MQ=255)
gCTTACTGGCTGGTTTTTTTGGTCTTATTTTCATcc > 1:3018713/1‑36 (MQ=37)
cTTACTGGCTGGTTTTTTTTGTCTTATTTGCATCCt > 1:316425/1‑36 (MQ=37)
cTTACTGGCTGGTTTTTTTGGTCTTATTGGCATCCt < 1:4642493/36‑1 (MQ=255)
tACTGGCTGGTTTTTTTGGTCTTATTGGCATCCTGt < 1:5433314/36‑1 (MQ=255)
tACTGGCTGGTTTTTTTGGTCTTATTGGCATCCTGt < 1:2377081/36‑1 (MQ=255)
ctggctggTTTTTTTGGTCTTATTGGCATCCTGTTg < 1:251438/36‑1 (MQ=255)
tggctggTTTTTTTGGTCTTATTTGCATCCTGTTgc > 1:5608752/1‑36 (MQ=255)
ggctggTTTTTTTGGTCTTATTGGCATCCTTTTtca > 1:4224586/1‑36 (MQ=37)
ggctggTTTTTTTGGTCTTATTGGCATCCTGTTgca > 1:4574149/1‑36 (MQ=255)
ggctggTTTTTTTGGTCTTATTGGCATCCTGTTgca > 1:2052592/1‑36 (MQ=255)
ggctggTTTTTTTGGTCTTATTGGCATCCTGTTgca < 1:3847431/36‑1 (MQ=255)
ggcgggTTTTTTTGGTCTTATTGGCATCCTTTTtca > 1:2819624/1‑36 (MQ=25)
gctggTTTTTTTTGTCTTCTTGGCATCCTGTTgcag < 1:2286069/36‑1 (MQ=37)
gctggTTTTTTTGGTCTTATTGGCATCCTGTTgcag < 1:752863/36‑1 (MQ=255)
gctggTTTTTTTGGTCTTATTGGCATCCTGTTgcag > 1:4218677/1‑36 (MQ=255)
gctggTTTTTTTGGTCTTATTGGCATCCTGTTgcag > 1:3543307/1‑36 (MQ=255)
gctggTTTTTTTGGTCTTATTGGCATCCTGTTgcag < 1:5301969/36‑1 (MQ=255)
gctggTTTTTTTGGTCTTATTGGCATCCTGTTgcag > 1:3432524/1‑36 (MQ=255)
ctggTTTTTTTGGTCTTATTGGCATCCTGTTgctgc > 1:946894/1‑36 (MQ=255)
ctggTTTTTTTGGTCTTATTGGCATCCTGTTgcagc > 1:3412093/1‑36 (MQ=255)
ctggTTTTTTTGGTCTTATTGGCATCCTGTTgcagc < 1:271590/36‑1 (MQ=255)
tggTTTTTTTGGTCTTATTGGCATCTTGTTgcagca > 1:513390/1‑36 (MQ=255)
tggTTTTTTTGGTCTTATTGGCATCCTGTTgcagca > 1:3453308/1‑36 (MQ=255)
tggTTTTTTTGGTCTTATTGGCATCCTGTTgcagca > 1:3133230/1‑36 (MQ=255)
ggTTTTTTTGGTCTTATTGGCATCCTGTTGCAGCAt > 1:847225/1‑36 (MQ=255)
tttttGGTCTTATTGGCATCCTGTTGCAGCATGCCt > 1:1095016/1‑36 (MQ=255)
tttttGGTCTTATTGGCATCCTGTTGCAGCATCCCt < 1:1808462/36‑1 (MQ=255)
ttttGGTCTTATTGGCATCCTGTTGCAGCATGCCTg > 1:4904161/1‑36 (MQ=255)
ttttGGTCTTATTGGCATCCTGTTGCAGCATGCCTg > 1:1276704/1‑36 (MQ=255)
ttttGGTCTTATTGGCATCCTGTTGCAGCATGCCTg < 1:1776067/36‑1 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATTCCTGc < 1:5584418/36‑1 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGc < 1:1298/36‑1 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGc > 1:5810955/1‑36 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGc < 1:5041398/36‑1 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGc > 1:4314939/1‑36 (MQ=255)
tttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGc < 1:4404134/36‑1 (MQ=255)
ttGGTCTTATTGGCATCCTGTTGCAGCATGCCTGca < 1:3516881/36‑1 (MQ=255)
tGGTCTTATTGGCATCCTGTTGCAGCATGCCTGcat > 1:5524262/1‑36 (MQ=255)
tGGTCTTATTGGCATCCTGTTGCAGCATGCCTGcat < 1:5486934/36‑1 (MQ=255)
ggTCTTATTGGCATCCTGTTGCAGCATGCCTGcatc < 1:1880885/36‑1 (MQ=255)
ggTCTTATTGGCATCCTGTTGCAGCATGCCTGcatc < 1:2306130/36‑1 (MQ=255)
ggTCTTATTGGCATCCTGTTGCAGCATGCCTGcatc < 1:1492838/36‑1 (MQ=255)
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CTCTCGTCGTTCTCTGCTTACTGGCTGGTTTTTTTGGTCTTATTGGCATCCTGTTGCAGCATGCCTGCATC > REL606/3125246‑3125316
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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