Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,126,699 | Δ1 bp | 90.2% | coding (335/879 nt) | pflC → | pyruvate formate lyase II activase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,126,699 | 0 | T→. | 90.2% | 14.9 0.0 ‑0.1 | 41 | coding (335/879 nt) | pflC | pyruvate formate lyase II activase |
Reads supporting (aligned to +/- strand): new base (17/20): ref base (2/2): total (19/22) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.53e-01 |
TGACGCTCTGGAACGGGAAGTGATGAAAGATGACATTTTTTTTCGCACGTCCGGCGGCGGCGTCACG > REL606/4126664‑4126730
|
tGACGCTCTGGAACGGGAAGTGATGAAAGATGACAt > 1:4300279/1‑36 (MQ=255)
tGACGCTCTGGAACGGGAAGTGATGAAAGATGACAt < 1:2518060/36‑1 (MQ=255)
gACGCTCTGGAACGGGAAGTGATGAAAGATGACAtt < 1:431566/36‑1 (MQ=255)
gACGCTCTGGAACGGGAAGTGATGAAAGATGACAtt < 1:671461/36‑1 (MQ=255)
aCGCTCTGGAACGGGAAGTGATGAAAGATGACAttt < 1:2180024/36‑1 (MQ=255)
aCGCTCTGGAACGGGAAGTGATGAAAGATGACAttt > 1:5022615/1‑36 (MQ=255)
gCTCTGGAACGGGAAGTGATGAAAGATGACAttttt < 1:7999624/36‑1 (MQ=255)
gCTCTGGAACGGGAAGTGATGAAAGATGACAttttt < 1:4413845/36‑1 (MQ=255)
gCTCTGGAACGGGAAGTGATGAAAGATGACAttttt > 1:2773244/1‑36 (MQ=255)
gCTCGGGAACGGGAAGTGATGAAAGATGACAttttt < 1:2876117/36‑1 (MQ=255)
ctctGGAACGGGAAGTGATGAAAGATGACAtttttt < 1:4064679/36‑1 (MQ=255)
ctctGGAACGGGAAGTGATGAAAGATGACAtttttt < 1:2003858/36‑1 (MQ=255)
ctctGGAACGGGAAGTGATGAAAGATGACAtttttt > 1:6545742/1‑36 (MQ=255)
ctctGGAACGGGAAGTGATGAAAGATGACAtttttt > 1:1138854/1‑36 (MQ=255)
tctGGAACGGGAAGTGATGAAAGATGACAttttttt > 1:4461363/1‑36 (MQ=255)
tctGGAACGGGAAGTGATGAAAGATGACAttttttt < 1:983301/36‑1 (MQ=255)
tctGGAACGGGAAGTGATGAAAGATGACAttttttt > 1:3782973/1‑36 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttc < 1:6059872/36‑2 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttc < 1:6316085/36‑2 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttc > 1:2852575/1‑35 (MQ=255)
tGGAACGGGAAGTGATGAAAGATGACAtttttttcg < 1:1146410/36‑3 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACAtttttttcgc < 1:4535230/36‑4 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACAtttttttcgc < 1:1177227/36‑4 (MQ=255)
aaCGGGAAGTGATGCAAGATGACATTTTTTTTccac > 1:6140654/1‑33 (MQ=37)
aaCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCAc < 1:8175680/36‑1 (MQ=37)
aaCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCAc < 1:2882330/36‑1 (MQ=37)
aaCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCAc < 1:5881278/36‑1 (MQ=37)
aaCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCAc < 1:8269365/36‑1 (MQ=37)
aaCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCAc < 1:2536451/36‑1 (MQ=37)
cGGGAAGTGATGAAAGATGACA.TTTTTTTCGCACGt < 1:6253046/36‑1 (MQ=37)
gggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTc < 1:8019875/36‑1 (MQ=37)
ggAAGTGATGAAAGATGACATTTTTTTTCGCACGTc > 1:4305580/1‑36 (MQ=255)
ggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTcc > 1:7682918/1‑36 (MQ=37)
gAAGTGATGAAAGATGACATTTTTTTTCGCACGTcc < 1:3112103/36‑1 (MQ=255)
gAAGTGATGAAAGATGACA.TTTTTTTCGCACGTCcg > 1:8304976/1‑36 (MQ=37)
gAAGTGATGAAAGATGACA.TTTTTTTCGCACGTCcg > 1:2638955/1‑36 (MQ=37)
aaGTGATGAAAGATGACA.TTTTTTTCGCACGTCcgg > 1:5965014/1‑36 (MQ=37)
aaGTGATGAAAGATGACA.TTTTTTTCGCACGTCcgg > 1:2017323/1‑36 (MQ=37)
aGTGATGAAAGATGACA.TTTTTTTCGCACGTCcggc > 1:5745003/1‑36 (MQ=38)
gTGATGAAAGATGACA.TTTTTTTCGCACGTCcggcg > 1:854216/1‑36 (MQ=38)
gTGATGAAAGATGACA.TTTTTTTCGCACGTCcggcg > 1:6574584/1‑36 (MQ=38)
tgatgaAAGATGACATTTTTTTTCGCACGTCcggcg < 1:3953754/36‑1 (MQ=255)
tgatgaAAGATGACA.TTTTTTTCGCACGTCcggcgg > 1:4976665/1‑36 (MQ=38)
gatgaAAGATGACA.TTTTTTTCGCACGTCcggcggc < 1:6173813/36‑1 (MQ=38)
gatgaAAGATGACA.TTTTTTTCGCACGTCcggcggc < 1:3028369/36‑1 (MQ=38)
gatgaAAGATGACA.TTTTTTTCGCACGTCcggcggc > 1:299400/1‑36 (MQ=38)
atgaAAGATGACA.TTTTTTTCGCACGTCcggcggcg < 1:8305460/36‑1 (MQ=37)
atgaAAGATGACA.TGTTTTTCGCACGTcc.gcggcgg > 1:1752049/1‑36 (MQ=16)
tgaAAGATGACA.TTTTTTTCGCACGTCcggcggcgg > 1:5080155/1‑36 (MQ=37)
tgaAAGATGACA.TTTTTTTCGCACGTCcggcggcgg < 1:4541853/36‑1 (MQ=37)
gaAAGATGACA.TTTTTTTCGCACGTCCggcggcggc > 1:8011827/1‑36 (MQ=37)
gaAAGATGACA.TTTTTTTCGCACGTCCggcggcggc < 1:5313490/36‑1 (MQ=37)
gaAAGATGACA.TTTTTTTCGCACGTCCggcggcggc < 1:3489340/36‑1 (MQ=37)
aaaGATGACA.TTTTTTTCGCACGTCCGgcggcggcg > 1:3576688/1‑36 (MQ=37)
aaaGATGACA.TTTTTTTCGCACGTCCGgcggcggcg > 1:993065/1‑36 (MQ=37)
aaGATGACA.TTTTTTTCGCACGTCCGGCGGCGGCGt > 1:2096946/1‑36 (MQ=37)
aGATGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTc < 1:1875312/36‑1 (MQ=37)
aTGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCAc < 1:7672837/36‑1 (MQ=37)
aTGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCAc < 1:6851444/36‑1 (MQ=37)
aTGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCAc < 1:7936145/36‑1 (MQ=37)
aTGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCAc < 1:6580625/36‑1 (MQ=37)
tGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCACg < 1:1570603/36‑1 (MQ=37)
tGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCACg < 1:229000/36‑1 (MQ=37)
tGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTCACg > 1:2843861/1‑36 (MQ=37)
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TGACGCTCTGGAACGGGAAGTGATGAAAGATGACATTTTTTTTCGCACGTCCGGCGGCGGCGTCACG > REL606/4126664‑4126730
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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