Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546952–547700 | 555923–555877 | 8178–8972 | 24 [20] | [1] 87 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 1 (0.020) | 59 (1.080) | 34/62 | NT | 98.3% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
TGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546916‑546963
|
tGGAGAAACCGAAACCGGTAATGACTCCAACTTAtt > 1:2621145/1‑36 (MQ=255)
tGGAGAAACCGAAACCGGTAATGACTCCAACTTAtt > 1:4436568/1‑36 (MQ=255)
tGGAGAAACCGAAACCGGTAATGACTCCAACTTAtt < 1:4067630/36‑1 (MQ=255)
ggAGAAACCGAAACCGGTAATGACTCCAACTTATTg > 1:1174315/1‑36 (MQ=255)
ggAGAAACCGAAACCGGTAATGACTCCAACTTATTg > 1:7678888/1‑36 (MQ=255)
ggAGAAACCGAAACCGGTAATGACTCCAACTTATTg < 1:632602/36‑1 (MQ=255)
ggAGAAACCGAAACCGGGAATGACTCCAACTTATTg > 1:7759597/1‑36 (MQ=255)
gagaAACCGAAACNGGTAATNACTCCAACTTATTNa > 1:613384/1‑36 (MQ=21)
gaaaccgaaaccGGTAATGACTCCAACTTATTGATa > 1:5112371/1‑36 (MQ=255)
gaaaccgaaaccGGTAATGACTCCAACTTATTGATa > 1:3477781/1‑36 (MQ=255)
gaaaccgaaaccGGTAATGACTCCAACTTATTGATa > 1:1939140/1‑36 (MQ=255)
gaaaccgaaaccGGTAATGACTCCAACTTATTGATa > 1:1009177/1‑36 (MQ=255)
gaaaccgaaaccGGGAATGACTCCAACTTATTGATa > 1:5657225/1‑36 (MQ=255)
aaaccgaaaccgGTAATGACTCCAACTTATTGATAg > 1:4320809/1‑36 (MQ=255)
aaccgaaaccgGTAATGACTCCGCCTTATTGATAgt < 1:3633769/36‑1 (MQ=18)
aaccgaaaccgGTAATGACTCCAACTTATTGATAgt < 1:3799278/36‑1 (MQ=255)
accgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:4085908/1‑36 (MQ=255)
accgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:1829683/1‑36 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTTTTGATAgtgt > 1:4463178/1‑36 (MQ=255)
cgaaaccgGTAATGACTCCAACTTATTGATAGTGtt > 1:6350492/1‑36 (MQ=255)
cgaaaccgGTAATGACTCCAACTTATTGATAGTGtt > 1:8126918/1‑36 (MQ=255)
aaccgGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:3299216/1‑36 (MQ=35)
aaccgGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:7852363/1‑36 (MQ=35)
aaccgGTAATGACTCCAACTTATTGATAGGGTTTTa > 1:7831177/1‑36 (MQ=255)
|
TGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546916‑546963
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|