New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 129226920 (0.470)5 (0.120) 3/52 NT 16.4% intergenic (+110/+34) galU/hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
?REL606 = 2173874 31 (0.540)coding (452/1716 nt) dld D‑lactate dehydrogenase, FAD‑binding, NADH independent

TTGTCTTAAACCGGACAATAAAAAATCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATT  >  REL606/1292234‑1292304
                                   |                                   
ttGTCTTAAACCGGACAATAAAAAATCCCGCCGATG                                     >  1:4970211‑M1/1‑36 (MQ=255)
  gTCTAAAACGGAAAAAAAAAAAACCCCGCCGATGGc                                   <  1:2651701/36‑1 (MQ=2)
     taaaaCCGGAAAAAAAAAAACCCCGCCGATGGCggg                                <  1:7278428/34‑1 (MQ=18)
      aaaaCGGGAAAAAAAAAAATCCCGCCGATGGCGGGa                               <  1:2096515/35‑1 (MQ=25)
        aaacGGACAAGAAAAAATCCCGACGATGGAGGGAtt                             >  1:981193/4‑36 (MQ=19)
        aaCCGGACAATAAAAAATCCCGCCGATGGCGGGaag                             >  1:5974982/1‑34 (MQ=255)
        aaCCGGACAATAAAAAATCCCGCCGATGGCGGGAtt                             >  1:138192/1‑36 (MQ=255)
          ccGGACAATAAAAAATCCCGCCGATGGCGGGAtttt                           >  1:6822993/1‑36 (MQ=255)
          ccGGACAATAAAAAATCCCGCCGATGGCGGGAtttt                           >  1:524509/1‑36 (MQ=255)
                 aaaaaaagTCCCGCCGATGGCGGGATTTTAAGCAAg                    <  1:3696373/34‑1 (MQ=38)
                 aTAAAAAAGCCCGCCGATGaccgatgcgcctataca                    <  1:6972855‑M1/36‑18 (MQ=255)
                   aaaaaaCCCCGCCGATGaccgatgcgcctatacacg                  <  1:3856905‑M1/36‑20 (MQ=255)
                    aaaaaCCCCGCCGATGaccgatgcgcctatacacga                 <  1:3039471‑M1/36‑21 (MQ=255)
                    aaaaaCCCCGCCGATGaccgatgcgcctatacacga                 <  1:5951049‑M1/36‑21 (MQ=255)
                      aaaTCCCGCCGATGGCGGGATTTTGAGCAAGTGCaa               >  1:3886246/1‑36 (MQ=255)
                      aaaTCCCGCCGATGGCGGGATTTTAAGCAAGTGCaa               >  1:5247529/1‑36 (MQ=255)
                      aaaCCCCGCCGATGGCGGGATTTTAAGCAAGTGCaa               <  1:3372035/36‑1 (MQ=255)
                       aaccccgccGATGaccgatgcgcctatacacgatga              <  1:7127751‑M1/33‑24 (MQ=255)
                        aTCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATc             >  1:5967197/1‑36 (MQ=255)
                           ccgccgATGaccgatgcgcctatacacgatgatcca          >  1:5230421‑M1/1‑9 (MQ=255)
                           ccgccgATGGCGGGATTTTAAGCAAGTGCAATCTAc          <  1:846326/36‑1 (MQ=255)
                           ccgccgATGGCGGGATTTTAAGCAAGTGCAATCTAc          >  1:6588083/1‑36 (MQ=255)
                            cgccgATGaccgatgcgcctatacacgatgatccaa         <  1:735193‑M1/36‑29 (MQ=255)
                            cgccgATGaccgatgcgcctatacacgatgatccaa         >  1:5375511‑M1/1‑8 (MQ=255)
                            cgccgATGaccgatgcgcctatacacgatgatccaa         >  1:6024974‑M1/1‑8 (MQ=255)
                             gccgATGaccgatgcgcctatacacgatgatccaat        >  1:3410245‑M1/1‑7 (MQ=255)
                             gccgATGaccgatgagcctatacacgatgatccaat        <  1:367687‑M1/36‑30 (MQ=255)
                             gccgATGGCGGGGTTTTAAGCAAGTGCAATCTACaa        >  1:2294574/1‑36 (MQ=255)
                             gccgATGGCGGGATTTTAAGCAAGTGCAATCTACaa        >  1:1074038/1‑36 (MQ=255)
                              ccgATGGCGGGATTTTAAGCAAGTGCAATCTCCaaa       >  1:5875845/1‑36 (MQ=255)
                              ccgATGGCGGGATTTTAAGCAAGTGCAATCTACaaa       <  1:5227207/36‑1 (MQ=255)
                               cgATGaccgatgcgcctatacacgatgatccaatca      >  1:6114231‑M1/1‑5 (MQ=255)
                               cgATGaccgatgcgcctatacacgatgatccaatca      >  1:2407452‑M1/1‑5 (MQ=255)
                                gATGaccgatgcgcctatacacgatgatccaatcac     >  1:7172796‑M1/1‑4 (MQ=255)
                                gATGacagatgcgcctatacacgatgatccaatcac     >  1:3545356‑M1/1‑4 (MQ=255)
                                 aTGaccgatgcgcctatacacgatgatccaatcact    <  1:3132785‑M1/36‑34 (MQ=255)
                                 aTGaccgatgcgcctatacacgatgatccaatcact    >  1:4774758‑M1/1‑3 (MQ=255)
                                 aTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGa    <  1:6801594/36‑1 (MQ=255)
                                  tGaccgatgcgcctatacacgatgatccaatcactg   >  1:962562‑M1/1‑2 (MQ=255)
                                   ggCGGGATTTTAAGCAAGTGCAATCTACAAAAGatt  <  1:7067315/36‑1 (MQ=255)
                                   ggCGGGATTTTAAGCAAGTGCAATCTACAAAAGagt  >  1:4619602/1‑34 (MQ=255)
                                   gaccgatgcgcctatacacgatgatccaatcactga  >  1:128296‑M1/1‑1 (MQ=255)
                                   gaccgatgcgcctatacacgatgatccaatcactga  >  1:1276444‑M1/1‑1 (MQ=255)
                                   |                                   
TTGTCTTAAACCGGACAATAAAAAATCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATT  >  REL606/1292234‑1292304

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG