Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,447,637 | +T | 10.0% | coding (78/897 nt) | ynbB → | predicted CDP‑diglyceride synthase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,447,637 | 1 | .→T | 10.0% | 5.3 ‑2.9 ‑0.2 | 20 | coding (78/897 nt) | ynbB | predicted CDP‑diglyceride synthase |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (3/15): total (5/15) | ||||||||||
Fisher's exact test strand distribution p-value = 5.26e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.80e-01 |
TTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACG > REL606/1447602‑1447672
|
ttAGCAACGCTGATAAACCGTTTTCTGCTATGGCgg > 1:5771705/1‑36 (MQ=255)
aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt > 1:7323588/1‑36 (MQ=255)
aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt < 1:6631559/36‑1 (MQ=255)
aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt < 1:510172/36‑1 (MQ=255)
aGCAACGCTGATAAACCGTTTTCTGATATGGCGG.tt > 1:6936664/1‑36 (MQ=255)
gCAACGCTGATAAACCGTTTTCTGCTATGGCgggtg > 1:3978857/1‑33 (MQ=255)
gCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTa < 1:1019930/36‑1 (MQ=255)
cAACGCTGATAAACCGTTTTCTGCTATGGCGG.ttgt > 1:7847479/1‑34 (MQ=255)
aaCGCTGATAAACCGTTTTCTGCTATGGCGG.TTTcc > 1:4582611/1‑36 (MQ=255)
aCGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCg < 1:5052229/36‑1 (MQ=255)
cGCTGATAAACCTTTTTCTGCTATGGCGG.TTACCgg < 1:2516243/36‑1 (MQ=255)
cTGATAAACCGTTTTCTGCTATGGCGG.TTACCGgag < 1:6034378/36‑1 (MQ=255)
gTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAgggg < 1:3646028/36‑1 (MQ=255)
ttttCTGCTATGGCGG.TTACCGGAGAGAAAAggggg < 1:6342922/36‑1 (MQ=255)
tttCTGCTATGGCGG.TTTCCGGGGGGGAAAgggggg > 1:7219923/1‑35 (MQ=16)
tttCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGt < 1:6699163/36‑1 (MQ=255)
tCTGCTATGGCGGTTTTCGGGGGGGAAAAggggggg > 1:7447308/1‑34 (MQ=255)
tCTGCTATGGCGGTTTCCCGGGGGGAAAAggggggg > 1:2122747/1‑34 (MQ=9)
gCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGt < 1:148782/36‑1 (MQ=255)
gCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGt < 1:5426079/36‑1 (MQ=255)
cTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGtt < 1:4752481/36‑1 (MQ=255)
tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa < 1:6596090/36‑1 (MQ=255)
tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa < 1:263324/36‑1 (MQ=255)
tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa < 1:3389175/36‑1 (MQ=255)
ggCGG.TTACCGGTGAGGAAAGGGGGGGAGGTTACAt > 1:6745720/1‑36 (MQ=25)
gCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACAtt < 1:6543758/36‑1 (MQ=255)
cGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTa < 1:7224170/36‑1 (MQ=255)
gg.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTAc < 1:451488/36‑1 (MQ=255)
g.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACg < 1:3402418/36‑1 (MQ=255)
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TTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACG > REL606/1447602‑1447672
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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