Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 134,149 | A→T | 11.6% | intergenic (‑85/‑270) | yacH ← / → acnB | hypothetical protein/aconitate hydratase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 134,149 | 0 | A→T | 11.6% | 3.2 ‑3.6 0.0 | 32 | intergenic (‑85/‑270) | yacH/acnB | hypothetical protein/aconitate hydratase |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (10/18): total (14/18) | ||||||||||
Fisher's exact test strand distribution p-value = 2.78e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAG > REL606/134114‑134182
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gTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTa < 1:144496/36‑1 (MQ=255)
cTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAAt < 1:6812764/36‑1 (MQ=255)
cTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAAt < 1:6498573/36‑1 (MQ=255)
gtgAATCCGAGTATAAAGAGGCGGTTGTTTTTAttt > 1:3826509/1‑36 (MQ=25)
gtgAATCCGAGTATAAAGAGGCGGTAGTTTAAAttt < 1:6500169/36‑1 (MQ=255)
gAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTg < 1:8308397/36‑1 (MQ=255)
gAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTg < 1:2060414/36‑1 (MQ=255)
aaTCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGa < 1:2483392/36‑1 (MQ=255)
aaTCCGAGTATAAAGAGGCGGGAGTTTTTAtttttt > 1:1252433/1‑34 (MQ=21)
aTCCGAGTATAAAGTGGCGGTGGTTTTCAttttttt > 1:593996/1‑33 (MQ=12)
aTCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGAc < 1:7007135/36‑1 (MQ=255)
aTCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGAc < 1:7006504/36‑1 (MQ=255)
cGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTaa < 1:3317663/36‑1 (MQ=255)
gAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAAt < 1:4520357/36‑1 (MQ=255)
aaaGAGGCGGTAGTTTAAATTTTGACTAATCTTggg < 1:1552383/36‑1 (MQ=255)
aaGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGa < 1:159049/36‑1 (MQ=255)
agagGCGGTAGTTTAAATTTTGACTAATCTTGGGAt < 1:2613891/36‑1 (MQ=255)
gagGCGGTAGTTTTAATTTTTACTAATCTTTGGGtt > 1:8008340/1‑36 (MQ=16)
gagGCGGTAGTTTAAATTTTGACTAATCTTGGGAtt < 1:3733430/36‑1 (MQ=255)
gagGCGGTAGTTTAAATTTTGACTAATCTTGGGAtt < 1:1939211/36‑1 (MQ=255)
gagGCGGTAGTTTAAATTTTGACTAATCTTGGGAtt < 1:7814958/36‑1 (MQ=255)
agGCGGTAGTTTAAATTTTGACTAATCTTTGGATTc > 1:6219617/1‑36 (MQ=255)
cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGtt > 1:6442479/1‑36 (MQ=255)
cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGtt > 1:2590786/1‑36 (MQ=255)
ggTAGTTTAAATTTTGACTAATCTTGGGATTCGTTg < 1:2162691/36‑1 (MQ=255)
gTAGTTTAAATTTTGACTAATCTTGGGATTCGTTga > 1:7500417/1‑36 (MQ=255)
tAGTTTAAATTTTGACTAATCTTGGGATTCGTTgag > 1:384204/1‑36 (MQ=255)
aGTTTAAATTTTGACTAATCTTGGGATTCGTTgaga > 1:4850204/1‑36 (MQ=255)
aGTTTAAATTTTGACTAATCTTGGGATTCGTTgaga > 1:414061/1‑36 (MQ=255)
aGTTTAAATTTTGACTAATCTTGGGATTCGTTgaga < 1:8057162/36‑1 (MQ=255)
gTTTAAATTTTGACTAATCTTGGGATTCGTTGAGaa > 1:161652/1‑36 (MQ=255)
tttAAATTTTGACTAATCTTGGGATTCGTTGAGaaa > 1:211666/1‑36 (MQ=255)
ttAAATTTTGACTAATCTTGGGATTCGTTGAGAAAg > 1:5823658/1‑36 (MQ=255)
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GTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAG > REL606/134114‑134182
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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