Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,464,140 | A→G | 16.5% | D521G (GAT→GGT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,464,140 | 0 | A→G | 16.5% | 2.3 ‑3.3 0.0 | 42 | 1562 | trg | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (20/14): total (28/14) | ||||||||||
Fisher's exact test strand distribution p-value = 3.68e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAGAACAGGCGGCACGATTAACTGAGGCGGTGGATGTATTCCGTCTGCACAAACATTCTGTGTCGGCAG > REL606/1464107‑1464175
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aagaaCAGGCGGCACGATTAACTGAGGCGGGGGGTg > 1:3135675/1‑36 (MQ=37)
aagaaCAGGCGGCACGATTAACTGAGGCGGGGGATg > 1:66778/1‑36 (MQ=255)
agaaCAGGCGGCACGATTAACTGAGGCGGTGGATGt < 1:1843841/36‑1 (MQ=255)
aaaaCAGTCTGCACGATTAGCTGAGGCGGTGGATGt < 1:2850882/34‑1 (MQ=25)
gaaCAGGCGGCACGATTAACTGAGGCGGTGGGTgga > 1:5816518/1‑34 (MQ=38)
aaCAGGCGGCACGATTAACTGAGGCGGTGGATGTAt < 1:3182863/36‑1 (MQ=255)
gcggcACGATTAACTGAGGCGGTGGGTGTATTCCGt > 1:4117938/1‑36 (MQ=255)
cggcACGATTAACTGAGGCGGCGGGTGTATTCCGTc > 1:5251091/1‑36 (MQ=37)
ggcACGATTAACTGAGGCGGTGGGTGTATTTCGTCt > 1:3444707/1‑36 (MQ=38)
ggcACGATTAACTGAGGCGGTGGATGTTTTTCGTCt > 1:1214354/1‑36 (MQ=37)
ggcACGATTAACTGAGGCGGTGGATGTATTCCGTCt < 1:3492602/36‑1 (MQ=255)
gcACGATTAACTGAGGCGGTGGGTGTATTTCGGCtt > 1:738458/1‑35 (MQ=25)
gcACGATTAACTGAGGCGGGGGATGTATTCCGTCtt > 1:657/1‑35 (MQ=255)
cGATTAACTTAGGCGGTGGATGTATTCCGTCTGcac < 1:839855/36‑1 (MQ=255)
cGATTAACTGAGGCGGTGGATGTATTCCGTCTGcac < 1:3943449/36‑1 (MQ=255)
gATTAACTGAGGCGGTGGATGTATTCCGTCTGcaca < 1:5238095/36‑1 (MQ=255)
gATTAACTGAGGCGGTGGATGTATTCCGTCTGcaca > 1:967638/1‑36 (MQ=255)
gATTAACTGAGGCGGGGGATGTATTTCGTCTGcaca > 1:59610/1‑36 (MQ=37)
aTTAACTGAGGCGGTGGGTGTATTTCTTCTGCCCaa > 1:3849326/1‑36 (MQ=16)
aTTAACTGAGGCGGTGGATGTATTTCGTCTTCACaa > 1:4062298/1‑36 (MQ=38)
tAACTGAGGCGGTGGATGTATTCCGTCTGCACAAAc < 1:4641553/36‑1 (MQ=255)
tAACTGAGGCGGGGGATGTGTTTTGTCTGCTCGAAc > 1:3522378/1‑36 (MQ=9)
aCTGAGGCGGGGGGTGTTTTCCGTCTGCACAAACag > 1:1413019/1‑35 (MQ=25)
cTGAGGCGGTGGAGGTATTTCGTTTGCCCAAACAtt > 1:1794234/1‑36 (MQ=255)
aGGCGGGGGATGTATTCCGTCTTCACAAACATTCtg > 1:341672/1‑36 (MQ=38)
ggCGGTGGATGTATTCCGTCTGCACAAACATTCtgt < 1:4975113/36‑1 (MQ=255)
gCGGTGGATGTATTCCGTCTGCACAAACATTCtgtg < 1:1005682/36‑1 (MQ=255)
gCGGTGGATGTATTCCGTCTGCACAAACATTCtgtg > 1:4574886/1‑36 (MQ=255)
gCGGTGGATGTATTACGTCTGCACAAACATTCtgtg > 1:2825392/1‑36 (MQ=255)
cGGTGGATGTATTCCGTCTGCACAAACATTCTgtgt < 1:5151203/36‑1 (MQ=255)
cGGTGGATGTATTCCGTCTGCACAAACATTCTgtgt < 1:2088690/36‑1 (MQ=255)
ggcggATGTATTCCGACTGCACGAACATTCTGGGTc > 1:2762679/4‑36 (MQ=19)
ggTGGATGTATTCCGTCTGCACAACCATTCTGTGTc > 1:3038980/1‑36 (MQ=255)
ggTGGATGTATTCCGTCTGCACAAACATTCTGTGTc > 1:3020343/1‑36 (MQ=255)
ggTGGATGTATTCCGTCTGCACAAACATTCTGTGTc > 1:328342/1‑36 (MQ=255)
ggTGGATGTATTCCGTCTGCACAAACATTCTGTGTc < 1:2431942/36‑1 (MQ=255)
gTGGATGTATTCCGTCTGCACAAACATTCTGTGTCg > 1:716125/1‑36 (MQ=255)
tGGATGTATTCCGTCTGCACAAACATTCTGTGTCgt > 1:1888709/1‑35 (MQ=255)
ggATGTATTCCGTCTGCACAAACATTCTGTGTCGGc < 1:1229126/36‑1 (MQ=255)
gATGTATTCCGTCTGCACAAACATTCTGTGTCggaa > 1:3414576/1‑34 (MQ=255)
gATGTATTCCGTCTGCACAAACATTCTGTGTCGGCa > 1:163106/1‑36 (MQ=255)
gATGTATTCCGTCTGCACAAACATTCTGTGTCGGCa > 1:1431452/1‑36 (MQ=255)
aTGTATTCCGTCTGCACAAACATTCTGTGTCGGCAg > 1:1638740/1‑36 (MQ=255)
aTGTATTCCGTCTGCACAAACATTCTGTGTCGGCAg < 1:1475923/36‑1 (MQ=255)
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AAGAACAGGCGGCACGATTAACTGAGGCGGTGGATGTATTCCGTCTGCACAAACATTCTGTGTCGGCAG > REL606/1464107‑1464175
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 13 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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