Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,141,009 | G→A | 23.6% | E28K (GAA→AAA) | yijC → | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,141,009 | 0 | G→A | 23.6% | 15.1 ‑0.7 ‑0.0 | 53 | 82 | yijC | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (7/6): ref base (27/13): total (34/19) | ||||||||||
Fisher's exact test strand distribution p-value = 5.07e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.88e-01 |
CAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGCCGCATTT > REL606/4140974‑4141044
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cAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAg > 1:7802241/1‑36 (MQ=255)
aGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGa > 1:5572699/1‑36 (MQ=255)
gACATCGTGATGGGCGTAAGAGCGCAACAAAAAGaa > 1:2816648/1‑36 (MQ=255)
cATCGTGATGGGCGTAAGAGCGCAACAAAAAGaaaa < 1:7454934/36‑1 (MQ=255)
aTCGTGATGGGCGTAAGAGCGCAACAAAAAGaaaaa < 1:5579115/36‑1 (MQ=255)
gTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACc < 1:4787648‑M2/36‑2 (MQ=255)
gTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACc > 1:7341501‑M2/1‑35 (MQ=255)
gTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACc > 1:1767827‑M2/1‑35 (MQ=255)
tGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACcc < 1:656620‑M2/36‑3 (MQ=255)
tGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACcc < 1:2923902‑M2/36‑3 (MQ=255)
tGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACcc < 1:6852849‑M2/36‑3 (MQ=255)
tGGGCGTAAGAGCGCAACAAAAAGAAAAAACccgcc < 1:5571892‑M2/36‑6 (MQ=255)
tGGGCGTAAGAGCGCAACAAAAAGAAAAAACccgcc > 1:7433392‑M2/1‑31 (MQ=255)
cGTAAGAGCGCAACAAAAAGAAAAAACCCGCCGTTc > 1:819558/1‑36 (MQ=255)
agTAAGAGCAAAACAAAAAGAAAAAACCCGCCGTTc < 1:7841874/35‑1 (MQ=25)
gTAAGAGCGCAACAAAAAGAAAAAACCCGCCGTTCg > 1:3447303/1‑36 (MQ=255)
aaGAGCGCAACAAAAAGAAAAAACCCGCCGTTCGCt > 1:1930025/1‑36 (MQ=255)
aaGAGCGCAACAAAAAGAAAAAACCCGCCGTTCGCt > 1:8334920/1‑36 (MQ=255)
agagCGAAAAAAAAAGAAAAACCCCGCCGTTCGCtg < 1:6090784/36‑1 (MQ=25)
gagCGCAACAAAAAGAAAAAACCCGCCGTTCGCtgg > 1:4956375/1‑36 (MQ=255)
agCGCAACAAAAAGAAAAAACCCGCCGTTCGCtggt > 1:6638661/1‑36 (MQ=255)
agCGAAAAAAAAAAAAAAAACCCGCCGTTCGCtggt < 1:5434703/36‑1 (MQ=18)
gcgcAACAAAAAGAAAAAACCCGCCGTTCGCtggtg > 1:621075/1‑36 (MQ=255)
cgcAACAAAAAGAAAAAACCCGCCGTTCGCtggtgg > 1:809768/1‑36 (MQ=255)
cgcAACAAAAAGAAAAAACCCGCCGTTCGCtggtgg > 1:2747246/1‑36 (MQ=255)
gaaacaaAAAGAAAAACCCCGCCGTTCGCTGGTGGa < 1:873195/34‑1 (MQ=38)
caacaaAAAGAAAAAACCCGCCGTTCGCTGGTGGaa > 1:8032097/1‑36 (MQ=255)
aaaaaaaaGAAAAAACCCGCCGTTCGCTGGTGGAAg < 1:1817160/33‑1 (MQ=255)
acaaAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGc > 1:4757174/1‑36 (MQ=255)
acaaAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGc > 1:2777313/1‑36 (MQ=255)
acaaAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGc > 1:3377767/1‑36 (MQ=255)
aaaaaaaGAAAAAACCCGCCGTTCGCTGGTGGAAGc < 1:849823/34‑1 (MQ=255)
aaaaaaaAAAAAAACCCGCCGTTCGCTGGTGGAAGc < 1:8007084/34‑1 (MQ=37)
aaaaaaaAAAAAAACCCGCCGTTCGCTGGTGGAAGc < 1:5901898/34‑1 (MQ=37)
caaAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGcc > 1:5843321/1‑36 (MQ=255)
caaAAAGAAAAAACCCGCCGCTCGCTGGTGGAAGcc > 1:8301022/1‑36 (MQ=255)
caaAAAAAAAAAACCCGCCGTTCGCTGGTGGAAGcc < 1:5913146/36‑1 (MQ=255)
aaaaaaGAAAAACCCCGCCGTTCGCTGGTGGAAGcc < 1:3153254/35‑1 (MQ=255)
aaaaaaAAAAAAACCCGCCGTTCGCTGGTGGAAGcc < 1:6589166/35‑1 (MQ=255)
aaaaaGAAAAAACCCGCCGTTCGCTGGTGGAAGCCg > 1:4411566/1‑36 (MQ=255)
aaaaaAAAAAAACccgccagtccacgtaataacgtt > 1:6205237‑M2/1‑13 (MQ=255)
aaaaaAAAAAAACccgccagtccacgtaataacgtt > 1:3203353‑M2/1‑13 (MQ=255)
aaaaaAAAAAAACCCGCCGTTCGCTGGTGGAAGCCg < 1:2574093/36‑1 (MQ=255)
gaaaaAAAAAACccgccgaaaactgtaccgagaaca > 1:1713578‑M2/2‑12 (MQ=255)
aaaaGAAAAAACCCGCCGTTCGCTGGTGGAAGCCGc > 1:4498743/1‑36 (MQ=255)
aaaaGAAAAAACCCGACGTTCGCTGGTGGAAGCCGc > 1:7363172/1‑36 (MQ=255)
aaaaAAAAAAACccgccgtaccagattaaggtattc > 1:2278046‑M2/1‑12 (MQ=255)
aaaaAAAAAAACccgccgaaaactgtaccgagaaca > 1:2798616‑M2/1‑12 (MQ=255)
aaaaAAAAAAACccgccagtccacgtaataacgttt > 1:1408672‑M2/1‑12 (MQ=255)
aaaaAAAAAAACccgccagtccacgtaataacgttt > 1:3633073‑M2/1‑12 (MQ=255)
aaaGAAAAAACCCGCCGTGCGCTGGTGGAAGCCGCa > 1:2614074/1‑36 (MQ=255)
aaaAAAAAAACccgccgaaaactgtaccgagaacaa > 1:4701667‑M2/1‑11 (MQ=255)
aaGAAAAAACCCGCCGTTCGCTGGTGGAAGCCGCAt > 1:5964286/1‑36 (MQ=255)
aaGAAAAAACCCGCCGTTCGCTGGTGGAAGCCGCAt > 1:4585948/1‑36 (MQ=255)
ggaAAGAACccgcctctgcgctggctcatgcggtac > 1:2980193‑M2/2‑9 (MQ=255)
ggaAAAAAAccgcctctgcgctggctcatgcggtac > 1:1686106‑M2/2‑9 (MQ=255)
aGAAAAAACccgcctctgcgctggctcatgcggtac > 1:3421879‑M2/1‑9 (MQ=255)
gAAAAAACccgcctctgcgctggctcatgcggtaca > 1:2043722‑M2/1‑8 (MQ=255)
gAAAAAACCCGCCGTTCGCTGGGGGAAGCCGCAttt > 1:3239008/1‑36 (MQ=255)
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CAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCCGCCGTTCGCTGGTGGAAGCCGCATTT > REL606/4140974‑4141044
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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