Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,325,522 | G→C | 22.5% | A84G (GCA→GGA) | menD ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,325,522 | 0 | G→C | 22.5% | 4.0 ‑3.9 0.0 | 25 | 251 | menD | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (11/8): total (11/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.96e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCACCGCCGTGCCGGAGGTCACAATCACC > REL606/2325490‑2325551
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aCCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCa > 1:1163429/1‑36 (MQ=255)
aCCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCa > 1:6721021/1‑36 (MQ=255)
aCCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCa < 1:6524912/36‑1 (MQ=255)
aCCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCa < 1:6111574/36‑1 (MQ=255)
ccGGCTTCAATCAGTGCCGGATAGAGATTTGCCAcc < 1:7586341/36‑1 (MQ=255)
ccGGCTTCAATCAGTGCCGGATAGAGATTTGCCAcc < 1:3569150/36‑1 (MQ=255)
cGGCTTCAATCAGTGCCGGATAGAGATTTGCCAccg > 1:3775923/1‑36 (MQ=255)
ctccAATCAGTCCGGAATAGAAATTTGCCAccgccg < 1:6541931/33‑1 (MQ=16)
cTTCAATCAGTGCCGGATAGAGATTTGCCAccgccg > 1:2048741/1‑36 (MQ=255)
ttCAATCAGTGCCGGATAGAGATTTGCCACCGCCGt > 1:229193/1‑36 (MQ=255)
gTGCCGGAAAGAGTTTTCCCACCGCCGTGCCGGAgg < 1:8457034/36‑1 (MQ=25)
tGCCGGATAGAGATTTGCCACCGCCGTGCCGGAGGt > 1:3784033/1‑36 (MQ=255)
tGCCGGATAGAGATTTGCCACCGCCGTGCCGGAGGt > 1:3604866/1‑36 (MQ=255)
ccccGGAAAAAAATTTGCCCCCGCCGTGCCGGAGGt < 1:5789976/34‑1 (MQ=16)
cGGATAGAGTTTGCCCCCCGCCGTGCCGGAGGTcac < 1:7931785/36‑1 (MQ=19)
ggATAGAGATTTGCCACCGCCGTGCCGGAGGTcaca > 1:4146513/1‑36 (MQ=255)
ggATAGAGATTTGCCACCGCCGTGCCGGAGGTcaca > 1:1861727/1‑36 (MQ=255)
atggagaTTCGCCACCGCCGTGCCGGAGGTCACAAt < 1:6165771/33‑1 (MQ=25)
aTAAAGTTTTCCCCCCGCCGTGCCGGAGGTCACAAt < 1:4190004/36‑1 (MQ=19)
tAGAGATTTGCCACCGCCGTGCCGGAGGTCACAATc > 1:6880283/1‑36 (MQ=255)
aagagTTTTGCCACCGCCGTGCCGGAGGTCACAATc < 1:7565731/35‑1 (MQ=255)
gagaTTTGCCACCGCCGTGCCGGAGGTCACAATCAc > 1:2819229/1‑36 (MQ=255)
gagaTTTCCCCCCGCCGTGCCGGAGGTCACAATCAc < 1:1174855/36‑1 (MQ=37)
aagaTTTCCCCCCGCCGTGCCGGAGGTCACAATCAc < 1:7192040/35‑1 (MQ=37)
agaTTGCCCACCGCCGTGCCGGAGGTCACAATCAcc < 1:1174597/36‑1 (MQ=37)
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ACCCGGCTTCAATCAGTGCCGGATAGAGATTTGCCACCGCCGTGCCGGAGGTCACAATCACC > REL606/2325490‑2325551
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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