Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,852,381 | A→G | 16.1% | L142P (CTC→CCC) | yeaM ← | predicted DNA‑binding transcriptional regulator |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,852,381 | 0 | A→G | 16.1% | 4.2 ‑4.3 0.0 | 44 | 425 | yeaM | predicted DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (18/18): total (26/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.37e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGGTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACATGAATTAATCTGCGG > REL606/1852347‑1852413
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gggTAGGTGCAGCTGTTGTTGTGGCTGGTTAGGGAg > 1:2070650/1‑36 (MQ=37)
ggTGGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGt < 1:3734471/36‑1 (MQ=255)
ggTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGt < 1:629296/36‑1 (MQ=255)
gTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt < 1:2087980/36‑1 (MQ=255)
gTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt < 1:3641824/36‑1 (MQ=255)
tAGGTGCAGCTGTTGTTGTGGCTGGTGGGGGGGttt > 1:3961975/1‑35 (MQ=25)
aGGTGCAGCTGTTGTTGTGGCTTTTGAGGGGGttta > 1:1438561/1‑34 (MQ=21)
ggTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtcat < 1:3440518/36‑1 (MQ=255)
gTGCAGCTGTTGTTGTGGCTGGTGGGGGGGTttatc > 1:5380054/1‑36 (MQ=19)
tGCAGCTGTTGTTGTGGCTGGTGAGGGGGGttatca > 1:5678237/1‑36 (MQ=19)
tGCAGCTGTTGTTGTGGCTGCTGGGGGGGTtcatca > 1:5198400/1‑36 (MQ=37)
gCAGCTGTTGTTGTGGCTGGTGTGGGGGTTCCTCaa > 1:5110497/1‑36 (MQ=19)
gCAGCTGTTGTTGTGGCTGGTGAGGGAGTTTATCaa > 1:4214831/1‑36 (MQ=38)
gCAGCTGTTGTTGTGGCTGCTGAGGGGGTTTATTaa > 1:1573726/1‑36 (MQ=25)
aGCTGTTGTTGTGGCTGGTGAGGGGGTTTATCaaaa > 1:2568029/1‑35 (MQ=21)
aGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:1191668/36‑1 (MQ=255)
gCTGTTGTTGTGGCTGGTGTGGGAGTTCATCATACa > 1:409972/1‑36 (MQ=25)
cTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAg < 1:4328656/36‑1 (MQ=255)
tgttgttgtGGCTGCTGAGGGAGTTCATCAAACAgg > 1:4136809/1‑36 (MQ=255)
tgttgtGGCTGCTTAGGGAGTTCATCAAACAGGACa > 1:1777374/1‑36 (MQ=255)
tgttgtGGCTGCTGAGGGAGTTCATCAAACAGGACa > 1:2862128/1‑36 (MQ=255)
gttgtGGCTGCTGTGGGAGTTCATCAAACAGGGCAt > 1:1633766/1‑36 (MQ=37)
ttgtGGCTGATGAGGGAGTTCATCAAACAGGACATg > 1:425403/1‑36 (MQ=255)
tgtgGCTGCTGAGGGAGTTCATCAAACAGGACATGa < 1:3124737/36‑1 (MQ=255)
tgtgGCTGCTGAGGGAGTTCATCAAACAGGACATGa > 1:3832039/1‑36 (MQ=255)
gtgGCTGCTGAGGGAGTTCATCAAACAGGACATGaa > 1:2385929/1‑36 (MQ=255)
gtgGCTGCTGAGGGAGTTCATCAAACAGGACATGaa < 1:4008674/36‑1 (MQ=255)
tgGCTGCTGAGGGAGTTCATCAAACAGGACATTAAt < 1:916224/36‑1 (MQ=255)
tgGCTGCTGAGGGAGTTCATCAAACAGGACATGAAt > 1:4963369/1‑36 (MQ=255)
ggCTGCTGAGGGAGTTCATCAAACAGGACATGAAtt > 1:5696417/1‑36 (MQ=255)
ctgctgATGGATTTCATCAAACAGGACATGAATTaa < 1:4668373/36‑1 (MQ=37)
ctgctgAGGGAGTTCATCAAACAGGACATGAATTaa > 1:2355838/1‑36 (MQ=255)
ctgctgAGGGAGTTCATCAAACAGGACATGAATTaa < 1:3397785/36‑1 (MQ=255)
tgctgAGGGAGTTCATCAAACAGGACATGAATTAAt > 1:2290823/1‑36 (MQ=255)
tgctgAGGGAGTTAATAAAACAGGACATGCATTAAt < 1:5784349/36‑1 (MQ=37)
gctgAGGGAGTTCATCAAACAGGACATGAATTAATc < 1:2239578/36‑1 (MQ=255)
gctgAGGGAGTTCATCAAACAGAACATGAATTAATc < 1:4455118/36‑1 (MQ=255)
gaagAGGGAGTTCATCAAACAGGACATGAATTAATc < 1:3686185/33‑1 (MQ=255)
tgAGGGAGTTCATCAAACAGGAGATGAATTTATGTg > 1:4391883/1‑36 (MQ=25)
gAGGGAGTTCATCAAACAGGACATGAATTAATCTGc < 1:1688136/36‑1 (MQ=255)
gAGGGAGTTCATCAAACAGGACATGAATTAATCTGc > 1:1551910/1‑36 (MQ=255)
aGGGAGTTCATCAAACAGGATATGAAGTAATCTGCg > 1:1413747/1‑36 (MQ=37)
aGGGAGTTCATCAAACAGGACATGAATTAATCTGCg < 1:2812573/36‑1 (MQ=255)
gggAGTTCATCAAACAGGACATGAATTAATCTGCgg > 1:433871/1‑36 (MQ=255)
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GGGTAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACATGAATTAATCTGCGG > REL606/1852347‑1852413
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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