New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2408209NA (NA)5 (0.090) 5/64 NT 7.2% noncoding (1/768 nt) IS1 repeat region
?REL606 = 4621899 64 (1.050)coding (7/522 nt) yjjX NTPase

Only 100 of 121 total aligned reads displayed.

CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTCAACGGGGAAAGACTGAG  >  REL606/2408174‑2408244
                                   |                                   
catcatACACTAAATCTGTAAGTTGGCAGCATCACC                                     >  1:4981706‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5330995‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:5294376‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:6397327‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:7779645‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:7777392‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5659643‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:5698690‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:3707748‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:3869667‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:388167‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:7572107‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:4230222‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:676721‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:4388873‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5680962‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:7192120‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5677733‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:4631034‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:6882612‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:4885674‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:4974883‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:4976426‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5501409‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:1136236‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:1218262‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:163756‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:6111981‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:1736235‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:176794‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:1843703‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:1876630‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:1930903‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:1997830‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5914821‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:5377178‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:6637529‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:2354295‑M1/1‑36 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:7875271‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:2256266‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:5989253‑M1/36‑1 (MQ=255)
catcatACACTAAATCAGTAAGTTGGCAGCATCACC                                     <  1:86693‑M1/36‑1 (MQ=255)
catcatACACTAAATAAGTAAGTTGGCAGCATCACC                                     >  1:2588884‑M1/1‑36 (MQ=255)
catcatAAACTAAATCAGTAAGTTGGCAGCATCACC                                     >  1:2273624‑M1/1‑36 (MQ=255)
   catACACTAAATCAGTAAGTTGGCAGCATCACCCAg                                  >  1:344862/1‑36 (MQ=32)
   catACACTAAATCAGTAAGTTGGCAGCATCACCCAg                                  >  1:715072/1‑36 (MQ=32)
   catACACTAAATCAGTAAGTTGGCAGCATCACCCAg                                  <  1:6199383/36‑1 (MQ=32)
    atACACTAAATCAGTAAGTTGGCAGCATCACCCAgg                                 <  1:5223125/36‑1 (MQ=35)
    atACACTAAATCAGTAAGTTGGCAGCATCACCCAgg                                 >  1:3170269/1‑36 (MQ=35)
    atACACTAAATCAGTAAGTTGGCAGCATCACCCAgg                                 >  1:1663045/1‑36 (MQ=35)
     tACACTAAATCAGTAAGTTGGCAGCATCACCCAGGt                                >  1:5682141/1‑36 (MQ=38)
     tACACTAAATCAGTAAGTTGGCAGCATCACCCAGGt                                <  1:1201959/36‑1 (MQ=38)
      acacTAAATCAGTAAGTTGGCAGCATCACCCAGGtt                               <  1:6515277/36‑1 (MQ=40)
      acacTAAATCAGTAAGTTGGCAGCATCACCCAGGtt                               <  1:6309929/36‑1 (MQ=40)
      acacTAAATCAGTAAGTTGGCAGCATCACCCAGGtt                               <  1:2933097/36‑1 (MQ=40)
      acacTAAATCAGTAAGTTGGCAGCATCACCCAGGtt                               <  1:2468568/36‑1 (MQ=40)
      acacTAAATCAGTAAGTTGGCAGCATCACCCAGGtt                               >  1:2459918/1‑36 (MQ=40)
       cacTAAATCAGTAAGTTGGCAGCATCACCcaagttg                              >  1:7458528‑M1/1‑29 (MQ=255)
       cacTAAATCAGTAAGTTGGCAGCATCACCGAGCtta                              <  1:7394971/36‑2 (MQ=1)
        acTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGt                             >  1:4149441/1‑36 (MQ=255)
         cTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGTa                            <  1:6268790/36‑1 (MQ=255)
         cTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGTa                            <  1:6904346/36‑1 (MQ=255)
         cTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGTa                            <  1:336240/36‑1 (MQ=255)
          caaaTCAGTAAGTTGGCAGCATCACCCAGGTTGTaa                           <  1:2904798/35‑1 (MQ=255)
            aaTCAGTAAGTTGGCAGCATCACCCAGGTTGTAAAc                         <  1:2238099/36‑1 (MQ=255)
             aTCAGTAAGTTGGCAGCATCACCCAGGTTGTAAACg                        <  1:7620816/36‑1 (MQ=255)
              tCAGTAAGTTGGCAGCATCACCCAGGTTGTAAATGa                       <  1:4124881/36‑1 (MQ=255)
               cAGTAAGTTGGCAGCATCACCCAGGTTGTAAACGAg                      >  1:1730533/1‑36 (MQ=255)
                 gTAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCt                    >  1:3027892/1‑36 (MQ=255)
                  tAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTc                   >  1:5450363/1‑36 (MQ=255)
                  tAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTc                   >  1:4456924/1‑36 (MQ=255)
                  tAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTc                   <  1:7805202/36‑1 (MQ=255)
                  tAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTc                   >  1:121258/1‑36 (MQ=255)
                   aaGTTGGCAGCATCACCCAGGTTTTAAACGATCTCa                  <  1:5274044/36‑1 (MQ=21)
                   aaGTTGGCAGCATCACCCAGGTTGTAAACGAGCTCa                  <  1:939214/36‑1 (MQ=255)
                   aaGTTGGCAGCATCACCCAGGTTGTAAACGAGCTCa                  <  1:1016700/36‑1 (MQ=255)
                     gTTGGCAGCATCACCCAGGTTGTAAACGAGCTCAAc                >  1:6242950/1‑36 (MQ=255)
                       tGGCGGCATCACCCAGGTTGTAAACGAGCTCAACgg              >  1:4588313/1‑36 (MQ=255)
                       tGGCAGCATCACCCAGGTTGTAAACGAGCTCAACgg              <  1:428449/36‑1 (MQ=255)
                        ggCAGCATCACCcaagttgtctgtgcgaccaccaat             >  1:4609409‑M1/1‑12 (MQ=255)
                         gcagcaTCACCCAGGTTGTAAACGAGCTCAACgggg            >  1:2101213/1‑36 (MQ=255)
                         gcagcaTCACCCAGGTTGTAAACGAGCTCAACgggg            <  1:3643589/36‑1 (MQ=255)
                         gcagcaTCACCCAGGTTGTAAACGAGCTCAACgggg            <  1:4876153/36‑1 (MQ=255)
                           agcaTCCCCcaagttgtctgtgcgaccaccaatccc          <  1:3355618‑M1/36‑28 (MQ=255)
                           agcaTCACCcaagttgtctgtgcgaacaccaatccc          >  1:5410561‑M1/1‑9 (MQ=255)
                           agcaTCACCCAGGTTGTAAACGAGCTCAACGGGGaa          <  1:3214236/36‑1 (MQ=255)
                            gcaTCACCCAGGTTGTAAACGAGCTCAACGGGGaaa         <  1:4169270/36‑1 (MQ=255)
                            gcaTCACCCAGGTTGTAAACGAGCTCAACGGGGaaa         >  1:4350914/1‑36 (MQ=255)
                            gcaTCACCCAGGTTGTAAACGAGCTCAACGGGGaaa         <  1:6846963/36‑1 (MQ=255)
                            gcaTCACCCAGGTTGTAAACGAGCTCAACGGGGaaa         >  1:5004725/1‑36 (MQ=255)
                              aTCACCCAGGTTGTAAACGAGCTCAACGGGGAAAGa       <  1:5771317/36‑1 (MQ=255)
                              aTCACCCAGGTTGTAAACGAGCTCAACGGGGAAAGa       >  1:5890487/1‑36 (MQ=255)
                                cACCcaagttgtctgtgcgaccaccaatcccgctaa     >  1:7765194‑M1/1‑4 (MQ=255)
                                cACCCAGGTTGTAAACGAGCTCAACGGGGAAAGACt     >  1:5781222/1‑36 (MQ=255)
                                 aCCCAGGTTGTAAACGAGCTCAACGGGGAAAGACTg    >  1:4570928/1‑36 (MQ=255)
                                 aCCCAGGTTGTAAACGAGCTCAACGGGGAAAGACTg    <  1:6926160/36‑1 (MQ=255)
                                  cccAGGTTGTAAACGAGCTCAACGGGGAAAGACTga   >  1:2277718/1‑36 (MQ=255)
                                   ccAGGTTGTAAACGAGCTCAACGGGGAAAGACTgag  >  1:7761581/1‑36 (MQ=255)
                                   ccAGGTTGTAAACGAGCTCAACGGGGAAAGACTgag  <  1:2990880/36‑1 (MQ=255)
                                   ccAGGTTGTAAACGAGCTCAACGGGGAAAGACTgag  <  1:6350594/36‑1 (MQ=255)
                                   |                                   
CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAGGTTGTAAACGAGCTCAACGGGGAAAGACTGAG  >  REL606/2408174‑2408244

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG