Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 983,805 | C→G | 27.2% | G31G (GGC→GGG) | msbA → | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 983,805 | 0 | C→G | 27.2% | 2.4 ‑3.3 0.0 | 18 | 93 | msbA | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (5/8): total (10/8) | ||||||||||
Fisher's exact test strand distribution p-value = 3.59e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATTGCGCCTTTCAAAGCGGGTCTGATCGTGGCGGGCGTAGCGTTAATCCTCAACGCAGCCAGCGATACCT > REL606/983770‑983839
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aTTGCGCCTTTCAAAGCGGGTCTGATCGTggcgggc < 1:5319253/36‑1 (MQ=255)
gcgcCTTTCAAAGCGGGTCTGATCGTGGCGGGGGtg > 1:4069479/1‑35 (MQ=255)
cgcCTTTCAAAGCGGGTCTGACCGTGGCGGGCGTAg < 1:3211561/36‑1 (MQ=255)
gcCTTTCAAAGCGGGTCTGATCGTGGCGGGGGttgg > 1:867432/1‑33 (MQ=38)
gcCTTTCAAAGCGGGTCTGATCGTGGCGGGCGTAGc < 1:5670593/36‑1 (MQ=255)
tttCAAAGCGGGCCGGATCGTGGCGGGGGTGGCGtt > 1:5741420/1‑36 (MQ=19)
ttCAAAGCGGGTATGATCGTGGCGGGCGTAGCGTTa < 1:4191518/36‑1 (MQ=255)
aaaGCGGGTCTGATCGTGGCGGGGGGAGGGTTTATc > 1:2893955/1‑36 (MQ=19)
aGCGGGTCTGATCGTGGTGGGCGTAGCGTTAATcat > 1:3040706/1‑34 (MQ=37)
aGCGGGTCTGATCGTGGCGGGCGGTGCGGTAATTCt > 1:5024340/1‑36 (MQ=16)
cGGGTCTGATCGTGGCGGGCGTAGCGTTAATCCTCa < 1:3833836/36‑1 (MQ=255)
gggTCTGATCGTGGCGGGGGGGGCGTTTAGCCTcca > 1:5180415/1‑34 (MQ=12)
gggTCTGATCGTGGCGGGCGTGGCGTTTATCCTcca > 1:1561875/1‑34 (MQ=21)
ggTCTGATCGTGGCGGGCGTAGCGTTAATCCTCCAc > 1:962467/1‑36 (MQ=255)
ggTCTGATCGTGGCGGGCGTAGCGTTAATCCTCAAc < 1:1434928/36‑1 (MQ=255)
tCTGATCGTGGCGGGCGTAGCGTTAATCCTCAACGc < 1:862292/36‑1 (MQ=255)
cTGATCGTGGCGGGCGTCGCGTTAATCCTCAACGca < 1:1477100/36‑1 (MQ=255)
cGTGGCGGGCGTAGGGTTTATCCTCAAAGcagccag > 1:5250567/1‑36 (MQ=37)
gTGGCGGGCGTAGCGTTAATCCTCAACGcagccagc < 1:3989869/36‑1 (MQ=255)
gcgggcgTAGCGTTAATCCTCAACGCAGCCAGCGAt < 1:672832/36‑1 (MQ=255)
gcgggcgTAGCGTTAATCCTCAACGCAGCCAGCGAt < 1:1766005/36‑1 (MQ=255)
cgggcgTAGCGTTAATCCTCAACGCAGCCAGCGATa > 1:213256/1‑36 (MQ=255)
gggcgTAGCGTTAATCCTCAACGCAGCCAGCGATAc > 1:3177227/1‑36 (MQ=255)
gggcgTAGCGTTAATCCTCAACGCAGCCAGCGATAc < 1:2578584/36‑1 (MQ=255)
ggcgTAGCGTTAATCCTCAACGCAGCCAGCGATAcc < 1:2376790/36‑1 (MQ=255)
ggcgTAGCGTTAATCCTCAACGCAGCCAGCGATAcc < 1:1802061/36‑1 (MQ=255)
ggcgTAGCGTTAATCCTCAACGCAGCCAGCGATAcc > 1:1295048/1‑36 (MQ=255)
gcgTAGCGTTAATCCTCAACGCAGCCAGCGATACCt > 1:5095146/1‑36 (MQ=255)
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ATTGCGCCTTTCAAAGCGGGTCTGATCGTGGCGGGCGTAGCGTTAATCCTCAACGCAGCCAGCGATACCT > REL606/983770‑983839
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 12 ≤
ATCG
< 25 ≤
ATCG
< 37 ≤
ATCG
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