Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 613,789 | C→G | 16.9% | pseudogene (79/987 nt) | cstA → | carbon starvation protein; b0598_2 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 613,789 | 0 | C→G | 16.9% | 2.2 ‑3.5 ‑0.0 | 40 | pseudogene (79/987 nt) | cstA | carbon starvation protein; b0598_2 |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (17/16): total (24/16) | ||||||||||
Fisher's exact test strand distribution p-value = 2.95e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 |
GCGTTTACTTTGCCATGAACAGCCCAATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCT > REL606/613754‑613824
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gCGTTTACTTTGCCATGAACAGCCCAATGGCGGTGc < 1:35741/36‑1 (MQ=255)
gTTTACTTTGCCATGAACAGCCCAATGGCGGTGCTg > 1:4657568/1‑36 (MQ=255)
gTTTACTTTGCCATGAACAGCCCAATGGCGGTGCTg < 1:3178941/36‑1 (MQ=255)
tttACTTTGCCATGAACAGCCCAATGGCGGTGGTgg > 1:4984944/1‑36 (MQ=255)
tACTTTGCCATGAACAGCCCAATGGCGGTGGTgggt > 1:5997016/1‑34 (MQ=38)
tACTTTGCCATGAACAGCCCAATGGCGGTGCTGGCt < 1:5611352/36‑1 (MQ=255)
tACTTTGCCATGAACAGCCCAATGGCGGTGCTGGCt < 1:2008721/36‑1 (MQ=255)
aCTTTGCCATGAACAGCCCAATGGCGGTGGTGGGTc > 1:6036233/1‑36 (MQ=37)
cTTTGCCATGAACAGCCCAATGGCGGTGCTGGCTcc < 1:5037947/36‑1 (MQ=255)
cTTTGCCATGAACAGCCCAATGGCGGTGCTGGCTcc < 1:5892448/36‑1 (MQ=255)
tttGCCATGAACAGCCCAATGGCGGGGGTGGGTCCg > 1:5926647/1‑36 (MQ=25)
tGCCATGAACAGCCCAATGGCGGTGCTGGCTCCGGc < 1:2058743/36‑1 (MQ=255)
gCCATGAACAGCCCAATGGCGGTGGTGGGTCCGGcc > 1:3408785/1‑35 (MQ=37)
gCCATGAACAGCCCAATGGCGGTGCTGGCTCCGGCa < 1:8448310/36‑1 (MQ=255)
gCCATGAACAGCCCAATGGCGGGGCTGGGGCCGGcg > 1:2511623/1‑35 (MQ=21)
ccATGAACAGCCCAATGGCGGGGGTTGCTCCGGccg > 1:5425359/1‑34 (MQ=21)
ccATGAACAGCCCAATGGCGGGGCTGGCGTCGGccg > 1:318393/1‑34 (MQ=18)
aTGAACAGCCCAATGGCGGGGCTGGCTCCGGCCggg > 1:5777319/1‑36 (MQ=37)
tGAACAGCCCAATGGCGGTGGTGGGTCCGGCAgggg > 1:1209918/1‑35 (MQ=37)
tGAACAGCCCAATGGCGGTGCTGGCTCCGGCAgggg > 1:7880674/1‑35 (MQ=255)
aaCAGCCCAATGGCGGTGCTTGGTCCGGCCgggggg > 1:991956/1‑33 (MQ=19)
aaCAGCCCAATGGCGGTGCTGGCTCCGGCGgggggg > 1:1843798/1‑33 (MQ=37)
aaCAGCCCAATGGCGGTGCTGGCTCCGGCAGGGAcg < 1:2338691/36‑1 (MQ=255)
aCAGCCCAATGGCGGTGCTGGCTCCGGCAGGGAcgg < 1:5935742/36‑1 (MQ=255)
aCAGCCCAATGGCGGGGCTGGCTCCGGCTGGGAcgg > 1:8337018/1‑36 (MQ=37)
aCAGCCCAATGGCGGGGCCGGCTCCCGCGGGGGcgg > 1:6986357/1‑36 (MQ=16)
aGCCCAAGGGCGGTGCTGGCTCCGGCAGGGAcggcg < 1:4821368/36‑1 (MQ=255)
gCCCAATGGCGGTGCTGGCTCCGGCAGGGAcggcgg < 1:2923034/36‑1 (MQ=255)
gCCCAATGGCGGTGCTGGCTCCGGCAGGGAcggcgg < 1:6538324/36‑1 (MQ=255)
cAATGGCGGTGCTGGCTCCGGCAGGGACGGCGGAtg < 1:8147655/36‑1 (MQ=255)
gCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGtg > 1:2303855/1‑35 (MQ=255)
gCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTc < 1:5346566/36‑1 (MQ=255)
gCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTc > 1:4404858/1‑36 (MQ=255)
gCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTc > 1:1795734/1‑36 (MQ=255)
ggTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGc > 1:3842211/1‑36 (MQ=255)
ggTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGc > 1:5720133/1‑36 (MQ=255)
ggTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGc > 1:3881159/1‑36 (MQ=255)
ggTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGc > 1:1277200/1‑36 (MQ=255)
gTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCggt > 1:2132288/1‑34 (MQ=255)
tGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCtt < 1:4330048/36‑1 (MQ=255)
gCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTc < 1:2943772/36‑1 (MQ=255)
cTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCt > 1:7033093/1‑36 (MQ=255)
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GCGTTTACTTTGCCATGAACAGCCCAATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCT > REL606/613754‑613824
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 13 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
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