New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 60665115 (0.300)6 (0.120) 5/60 NT 25.0% coding (568/957 nt) fepB iron‑enterobactin transporter subunit
?REL606 3650765 = 21 (0.370)intergenic (+46/+141) cspA/hokA major cold shock protein/toxic polypeptide, small

GCGGTATAGACAATGGCAGTGACCGGCTGCGGCGGTAATTTGATTTGCTCTTTCGCCGCTGCCAGTTGCT  >  REL606/606617‑606686
                                  |                                   
gcggTATAGACAATGGCAGTGACCGGCTGCGGCGGt                                    <  1:6782206/36‑1 (MQ=255)
gcggTATAGACAATGGCAGTGACCGGCTGCGGCGGt                                    <  1:2715231/36‑1 (MQ=255)
gcggTATAGACAATGGCAGTGACCCGCTGCGGCGGg                                    >  1:4393111‑M1/1‑35 (MQ=255)
gcggTATAAACAATGGCAGTGTCCGGCTGCGGCGGt                                    <  1:6458928/36‑1 (MQ=37)
   gTATAGACAATGGCAGTGACCGGCTGCGGCGGTAat                                 <  1:4764697/36‑1 (MQ=255)
   gTATAGACAATGGCAGTGACCGGCTGCGGCGGTAat                                 <  1:2931901/36‑1 (MQ=255)
   gTATAGACAATGGCAGTGACCGGCTGCGGCGGTAat                                 <  1:4045517/36‑1 (MQ=255)
    tataGACAATGGCAGTGACCGTCTGCGGCGGTAatt                                <  1:1838962/36‑1 (MQ=255)
    tataGACAATGGCAGTGACCGGCTGCGGCGGgggtt                                >  1:2817442‑M1/1‑31 (MQ=255)
     ataGACAATGGCAGTGACCGGCTGCGGCGGggaatt                               >  1:1317761‑M1/1‑30 (MQ=255)
     ataGACAATGGCAGTGACCGGCTGCGGCGGTAattt                               <  1:5260274/36‑1 (MQ=255)
      taGACAATGGCAGTGACCGGCTGCGGCGGTAatttg                              <  1:6188398/36‑1 (MQ=255)
       aGACAATGGCAGTGACCGGCTGCGGCGGggattttt                             >  1:1050899‑M1/1‑28 (MQ=255)
       aGACAATGGCAGTGACCGGCTGCGGCGGTAatttga                             <  1:3109310/36‑1 (MQ=255)
         aCAGTGGCAGTGACCGGCTGCGGTGGTAatttgatt                           <  1:5340112/36‑1 (MQ=37)
         aCAATGGCAGTGACCGGCTGCGGCGGggattttttt                           >  1:6605894‑M1/1‑26 (MQ=255)
         aCAATGGCAGTGACCGGCTGCGGCGGggattttttt                           >  1:4873211‑M1/1‑26 (MQ=255)
           aaTGGCAGTGACCGGCTGCGGCGGTAatttgatttg                         <  1:3035250/36‑1 (MQ=255)
               gCAGTGACCGTCTGCGGCGGTGATTTGATTTGctct                     <  1:6140660/36‑1 (MQ=21)
                  gTGACCGACTGCGGCGGTAATTTGATTTGCTCTTTc                  <  1:3472644/36‑1 (MQ=255)
                   tGACCGGCTGCGGCGGTAATTTGATTTGCTCTTTcg                 <  1:1372320/36‑1 (MQ=255)
                    gACCGGCTGCGGCGGGGATTTTTTTTTCTTttttgt                >  1:1076833/1‑33 (MQ=0)
                              ggcggggatttttttatttgttttcaggaaataaat      >  1:984275‑M1/1‑5 (MQ=255)
                              ggcggTAATTTGATTTGCTCTTTCGCCGCTGCCAGt      <  1:7002236/36‑1 (MQ=255)
                               gcggTAATTTGATTTGCTCTTTCGCCGCTGCCAGtt     <  1:1917990/36‑1 (MQ=255)
                                cggggatttttttatttgttttcaggaaataaataa    >  1:5236683‑M1/1‑3 (MQ=255)
                                 ggggatttttttatttgttttcaggaaataaataat   <  1:6140404‑M1/36‑35 (MQ=255)
                                 ggTAATTTGATTTGCTCTTTCGCCGCTGCCAGTTGc   >  1:4702721/1‑36 (MQ=255)
                                 ggTAATTTGATTTGCTCTTTCGCCGCTACCAGTTGc   >  1:3209397/1‑36 (MQ=255)
                                  gTAATTTGATTTGCTCTTTCGCCGCTGCCAGTTGCt  >  1:5502797/1‑36 (MQ=255)
                                  gTAATTTGATTTGCTCTTTCGCAGCTGCCAGTTGCt  <  1:2642325/36‑1 (MQ=255)
                                  |                                   
GCGGTATAGACAATGGCAGTGACCGGCTGCGGCGGTAATTTGATTTGCTCTTTCGCCGCTGCCAGTTGCT  >  REL606/606617‑606686

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG