Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,775,878 | Δ1 bp | 11.1% | intergenic (‑48/+201) | insJ‑3 ← / ← cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,775,878 | 0 | G→. | 11.1% | 18.5 ‑2.6 ‑0.1 | 54 | intergenic (‑48/+201) | insJ‑3/cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (20/28): total (20/34) | ||||||||||
Fisher's exact test strand distribution p-value = 7.40e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.91e-01 |
CCATTTCATCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCAT > REL606/2775844‑2775912
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ccATTTCATCGTCCAACAAAATGGGTGCAGTAC.Agg < 1:2917255/36‑1 (MQ=32)
ccATTTCATCGTCCAACAAAATGGGTGCAGTAC.Agg < 1:2686804/36‑1 (MQ=32)
ccATTTCATCGTCCAACAAAATGGGTGCAGTAC.Agg > 1:6351287/1‑36 (MQ=32)
cATTTCATCGTCCAACAAAATGGGTGCAGTAC.AGGt < 1:7415775/36‑1 (MQ=35)
cATTTCATCGTCCAACAAAATGGGTGCAGTAC.AGGt > 1:5461320/1‑36 (MQ=35)
aTTTCATCGTCCAACAAAATGGGTGCAGTAC.AGGtt < 1:6301714/36‑1 (MQ=38)
tttCATCGTCCAACAAAATGGGTGCAGTAC.AGGTTg < 1:270052/36‑1 (MQ=40)
ttCATAGTCCAAAAAAATGGGTGCAGTAC.AGGTTGa > 1:1414446/1‑36 (MQ=17)
tCATCGTCCAACAAAATGGGTGCAGTAC.AGGTTGAt > 1:2184627/1‑36 (MQ=255)
cATCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATa < 1:3695949/36‑1 (MQ=255)
aTCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAg > 1:603805/1‑36 (MQ=255)
aTCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAg < 1:3478375/36‑1 (MQ=255)
aTCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAg > 1:2218754/1‑36 (MQ=255)
aTCGTCCAACAAAATGGGTGCAGTAC.A.GTTGATAG..a < 1:1793419/36‑1 (MQ=11)
tCGTCCAACAAAATGGGTGCAGTAC.A.GTTGATAG..aa < 1:6341575/36‑1 (MQ=14)
tCGTCCAACAAAATGGGTGCAGTAC.A.GTTGATAG..aa < 1:3062395/36‑1 (MQ=14)
tCGTCCAACAAAATGGGTGCAGTAC.A.GTTGATAG..aa < 1:7841047/36‑1 (MQ=14)
cGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..aa > 1:7235741/1‑36 (MQ=255)
gTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..aaa < 1:5364957/36‑1 (MQ=255)
gTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..aaa < 1:1864805/36‑1 (MQ=255)
gTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..aaa < 1:1092837/36‑1 (MQ=255)
ccAACAAAATGGGTGCAGTAC.AGGTTGATAG..AAata < 1:4531070/36‑1 (MQ=255)
ccAACAAAATGAGTGCAGTAC.AGGTTGATAG..AAata < 1:3869308/36‑1 (MQ=255)
caacaaAATGGGTGCAGTAC.AGGTTGATAG..TAaaat < 1:147504/36‑1 (MQ=18)
aacaaAATGGGTGCAGTAC.AGGTTGATAG..AAATATc > 1:5482093/1‑36 (MQ=255)
aacaaAATGGGTGCAGTAC.AGGTTGATAG..AAATATc > 1:1755429/1‑36 (MQ=255)
aacaaAATGGGTGCAGTAC.AGGTTGATAG..AAATATc < 1:3594722/36‑1 (MQ=255)
aacaaAATGGGTGCAGTAC.A.GTTGATAG..AAATATCg < 1:410732/36‑1 (MQ=18)
acaaAATGGGTGCAGTAC.AGGTTGATAG..AAATATCg < 1:1872656/36‑1 (MQ=255)
caaAATGGGTGCAGTAC.AGGTTGATAG..AAATATCGc < 1:7805265/36‑1 (MQ=255)
caaAATGGGTGCAGTAC.AGGTTGATAG..AAATATCGc > 1:3467592/1‑36 (MQ=255)
aaaaTGGGTGCAGTAC.A.GTTGATAG..AAATATCggtc < 1:7726538/36‑4 (MQ=18)
aaaTGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCt > 1:4851825/1‑36 (MQ=255)
aaaTGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCt < 1:669316/36‑1 (MQ=255)
aaTGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCTg < 1:123425/36‑1 (MQ=255)
aaTGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCTg > 1:14174/1‑36 (MQ=255)
aTGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCTgg < 1:6606959/36‑1 (MQ=255)
gggTGCAGTAC.AGGTTGATAG..AAATATCGCCTgggg < 1:788543/36‑1 (MQ=255)
gggTGCAGTAC.AGGTTGATAG..AAATATCGCCTgggg < 1:6852583/36‑1 (MQ=255)
ggTGCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGc > 1:995394/1‑36 (MQ=255)
ggTGCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGc > 1:3527456/1‑36 (MQ=255)
gTGCAGTAC.AGGTTTATAG..AAATATCGCCTGGGGCt < 1:3760599/36‑1 (MQ=255)
tGCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCtt > 1:5110309/1‑36 (MQ=255)
gCAGTACAAGGTTGATAG..AAATATCGCCTGGGGCtt < 1:2007250/36‑1 (MQ=25)
gCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCttt > 1:5103364/1‑36 (MQ=255)
cAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCtttt > 1:5130693/1‑36 (MQ=255)
cAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCtttt < 1:509843/36‑1 (MQ=255)
cAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCtttt < 1:1115675/36‑1 (MQ=255)
aGTAC.AGGTTGATAGTAAAATATCACTCGGGGCttt < 1:1193869/36‑1 (MQ=25)
aGTAC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTg < 1:4374519/36‑1 (MQ=255)
gTAC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGt > 1:5578499/1‑36 (MQ=255)
gTAC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGt > 1:16828/1‑36 (MQ=255)
aC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTTTcc > 1:3376607/1‑36 (MQ=255)
c.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCa < 1:7378032/36‑1 (MQ=255)
c.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCa > 1:7766192/1‑36 (MQ=255)
aGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCAt < 1:156915/36‑1 (MQ=255)
aGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCAt < 1:4652710/36‑1 (MQ=255)
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CCATTTCATCGTCCAACAAAATGGGTGCAGTAC.AGGTTGATAG..AAATATCGCCTGGGGCTTTTGTCCAT > REL606/2775844‑2775912
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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