Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,741,525 | +G | 6.7% | coding (748/924 nt) | hycD ← | hydrogenase 3, membrane subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,741,525 | 1 | .→G | 6.7% | 4.3 ‑2.7 ‑0.5 | 30 | coding (748/924 nt) | hycD | hydrogenase 3, membrane subunit |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (6/22): total (8/22) | ||||||||||
Fisher's exact test strand distribution p-value = 6.44e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.96e-01 |
GATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGAATAAAC > REL606/2741490‑2741559
|
gATGGCAATCCCCAGCGCCAGCAGCAGTCCACctgc < 1:6158505/36‑1 (MQ=37)
gATGGCAATCACCAGCGCCATCAGCAGTCCACcggc < 1:4720916/36‑1 (MQ=255)
gATGGCAATCACCAGCGCCAGCAGCAGTCCACcggc > 1:1782527/1‑36 (MQ=255)
gATGGCAATCACCAGCGCCAGCAGCAGTCCACcggc > 1:6473583/1‑36 (MQ=255)
aTGGCAATCACCAGCGCCAGCAGCAGTCCACcggc.g < 1:5549546/36‑1 (MQ=255)
aTGGCAATCACCAGCGCCAGCAGCAGTCCACcggc.g > 1:3332077/1‑36 (MQ=255)
aTGGCAATCACCAGCGCCAGCAGCAGTACACcggc.g > 1:208010/1‑36 (MQ=255)
tGGCAATCACCAGCGCCAGCAGCAGTCCACcggc.gg < 1:1099898/36‑1 (MQ=255)
ggCAATCACCAGCGCCAGCAGCAGTCCGCCGGC.GGt < 1:2719749/36‑1 (MQ=255)
cAATCACCAGCGCCAGCAGCAGTCCACCGGC.GGTgg > 1:4670904/1‑35 (MQ=255)
aaccACCAGCGCCAGCAGCAGTCCACCGGC.GGTG.aa < 1:4984671/33‑1 (MQ=255)
aaTCACCAGCGCCAGCAGCAGTCCACCGGC.GGTG.aa < 1:6810360/36‑1 (MQ=255)
aCCAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGtt < 1:5283984/36‑1 (MQ=255)
aCCAGCGCCAGCAGCAGTCCACCGGC.GGGG.GA.gggg > 1:3981269/1‑34 (MQ=21)
ccAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGttt < 1:3885371/36‑1 (MQ=255)
ccAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGttt < 1:5105565/36‑1 (MQ=255)
cAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTc < 1:3834657/36‑1 (MQ=255)
cAGCGCCAGCAGCAGTCCACCGGC.GGGGAAA.GGttt > 1:265337/1‑36 (MQ=21)
aGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTcc < 1:7473419/36‑1 (MQ=255)
aGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTcc < 1:6328310/36‑1 (MQ=255)
cgcCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTCCAt < 1:2049948/36‑1 (MQ=255)
gcCAGCACCAGTCCTCCGGC.GGTG.AA.GGTTTCCAtt < 1:294222/36‑1 (MQ=37)
ccAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTCCAttt < 1:4127954/36‑1 (MQ=255)
ccAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTCCAttt < 1:5338504/36‑1 (MQ=255)
cagcagcagTCCACCGGC.GGTG.AA.GGTTTCCATTTg < 1:3687061/36‑1 (MQ=255)
cagcagcagTCCACCGGC.GGTG.AA.GGTTTCCATTTg < 1:6035491/36‑1 (MQ=255)
agcagcagTCCACCGGCGGGGG.AG.GGTTTCCTtttt > 1:2918116/1‑35 (MQ=12)
gcagcagTCCACCGGCGGGGG.AA.GGTTTCCTttttt > 1:4457472/1‑34 (MQ=16)
cagcagTCCACCGGC.GGTG.AA.GGTTTCCATTTGTcc < 1:1138812/36‑1 (MQ=255)
gcagTCCACCGGC.GGTG.AA.GGTTTCCATTTGTcccc < 1:2594359/36‑1 (MQ=255)
gcagCCCCCCGGC.GGTG.AA.GGTTTCCATTTGTcccc < 1:5932109/36‑1 (MQ=37)
cagTCCACCGGC.GGTG.AA.GGTTTCCATTTGTCCCCa < 1:2257278/36‑1 (MQ=255)
agTCCACCGGC.GGTG.AA.GGTTTCCATTTGTCCCCAc < 1:2509464/36‑1 (MQ=255)
ccACCGGC.GGTG.AAGGGTTTCCTTTTTTCCCCCCgc > 1:3245360/1‑35 (MQ=12)
ccACCGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGa < 1:7419778/36‑1 (MQ=255)
aCCGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGAAt < 1:3956253/36‑1 (MQ=255)
ccGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGAATa > 1:3617013/1‑36 (MQ=255)
ccGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGAATa > 1:7202245/1‑36 (MQ=255)
cggc.ggTG.AA.GGTTTCCATTTGTCCCCACGGAATaa < 1:6275984/36‑1 (MQ=255)
gc.ggTG.AA.GGTTTCCATTTGTCCCCACGGAATAAac > 1:2941707/1‑36 (MQ=255)
|
GATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC.GGTG.AA.GGTTTCCATTTGTCCCCACGGAATAAAC > REL606/2741490‑2741559
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|