Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 54 [3] [0] 44 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)37 (0.670) 27/64 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 0 (0.000)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT  >  REL606/3894961‑3895031
                                   |                                   
tCGTGTTTAACTGTCCACCTTTTTGGGGTCAGTACA                                     <  1:5274840‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGTTCAGTACA                                     >  1:7929304‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:6343875‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:3295321‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:3936365‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:1784105‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:7901925‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:7444619‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:5115105‑M1/1‑36 (MQ=255)
 cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg                                    <  1:2364375‑M1/36‑2 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  <  1:2697924‑M1/36‑4 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  <  1:1204577‑M1/36‑4 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc                                  <  1:1766025/36‑1 (MQ=38)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc                                  <  1:3569420/36‑1 (MQ=38)
    gtTTAACTGTCCAACTTTGTGAGGTAACTACAggtt                                 >  1:6897046/1‑33 (MQ=2)
       tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc                              <  1:24570‑M1/36‑8 (MQ=255)
       tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc                              >  1:7447282‑M1/1‑29 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc                             <  1:1530738‑M1/36‑9 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc                             >  1:3425479‑M1/1‑28 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc                             >  1:3832823‑M1/1‑28 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgcca                             >  1:6944651‑M1/1‑28 (MQ=255)
         aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca                            >  1:6861061‑M1/1‑27 (MQ=255)
         aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca                            <  1:3216303‑M1/36‑10 (MQ=255)
          cTGTCCAACTTTTTGGGGTCAGTACAggttgcccag                           <  1:6193507‑M1/36‑11 (MQ=255)
            gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt                         >  1:4716605‑M1/1‑24 (MQ=255)
             tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg                        <  1:6601788‑M1/36‑14 (MQ=255)
             tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg                        <  1:1182490‑M1/36‑14 (MQ=255)
                aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc                     <  1:3280724‑M1/36‑17 (MQ=255)
                  cTTTTTGGGGTCAGTACAggttgcccaggtgaccag                   >  1:880125‑M1/1‑18 (MQ=255)
                   tttttGGGGTCAGTACAggttgcccaggtgaccagc                  <  1:2095577‑M1/36‑20 (MQ=255)
                   tttttGGGGTCAGTACAggttgcccaggtgaccagc                  >  1:2898066‑M1/1‑17 (MQ=255)
                    ttttGGGGTCAGTACAggttgcccaggtgaccagca                 <  1:934093‑M1/36‑21 (MQ=255)
                     tttGGGGTCAGTACAggttgcccaggtgaccagcac                <  1:2344073‑M1/36‑22 (MQ=255)
                       tGGGGTCAGTACAggttgcccaggtgatcagcacgc              <  1:5586980‑M1/36‑24 (MQ=255)
                       tGGGGTCAGTACAggttgcccaggtgaccagcacgc              <  1:178612‑M1/36‑24 (MQ=255)
                       tGGGGTCAGTACAggttgcccaggtgaccagcacgc              >  1:6120011‑M1/1‑13 (MQ=255)
                        ggggTCAGTACAggttgcccaggtgaccagcacgcc             <  1:4938404‑M1/36‑25 (MQ=255)
                        ggggTCAGTACAggttgcccaggtgaccagcacgcc             >  1:7129715‑M1/1‑12 (MQ=255)
                        ggggTCAGTACAggttgcccaggtgaccagcacgcc             <  1:2951071‑M1/36‑25 (MQ=255)
                         gggTCAGTACAggttgcccaggtgaccagcacgccg            >  1:6339565‑M1/1‑11 (MQ=255)
                           gTCAGTACAggttgcccaggtgaccagcacgccgcc          <  1:6410723‑M1/36‑28 (MQ=255)
                           gTCAGTACAggttgcccaggtgaccagcacgccgcc          <  1:3540023‑M1/36‑28 (MQ=255)
                           gTCAGTACAggttgcccaggtgaccagcacgccgcc          >  1:5843826‑M1/1‑9 (MQ=255)
                              aGTACAggttgcccaggtgaccagcacgccgccaag       <  1:4306323‑M1/36‑31 (MQ=255)
                              aGTACAggttgcccaggtgaccagcacgccgccaag       <  1:4718499‑M1/36‑31 (MQ=255)
                              aGTACAggttgcccaggtgaccagcacgccgccaag       <  1:4545028‑M1/36‑31 (MQ=255)
                                tACAggttgcccaggtgaccagcacgccgccaagaa     >  1:3241821‑M1/1‑4 (MQ=255)
                                 aCAggttgcccaggtgaccagcacgccgccaagaac    >  1:7877541‑M1/1‑3 (MQ=255)
                                 aCAggttgcccaggtgaccagcacgccgccaagaac    >  1:4986518‑M1/1‑3 (MQ=255)
                                 aCAggttgcccaggtgaccagcacgccgccaagaac    <  1:4427222‑M1/36‑34 (MQ=255)
                                  cAggttgcccaggtgaccagcacgccgccaagaacg   >  1:5133658‑M1/1‑2 (MQ=255)
                                  cAggttgcccaggtgaccagcacgccgccaagaacg   <  1:4312572‑M1/36‑35 (MQ=255)
                                   aggttgcccaggtgaccagcacgccgccaagaacgg  >  1:3999297‑M1/1‑1 (MQ=255)
                                   aggttgcccaggtgaccagcacgccgccaagaacgg  <  1:5549332‑M1/36‑36 (MQ=255)
                                   |                                   
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT  >  REL606/3894961‑3895031

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG