Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,004,251 | T→C | 90.2% | intergenic (‑177/+425) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,004,251 | 0 | T→C | 90.2% | 2.4 ‑1.5 0.0 | 31 | intergenic (‑177/+425) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
Reads supporting (aligned to +/- strand): new base (13/14): ref base (3/0): total (17/14) | ||||||||||
Fisher's exact test strand distribution p-value = 2.28e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAAAGTAAA > REL606/1004218‑1004283
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tcccGTGAAAGTGATACAAAGATAAAGATTTGGctt < 1:2173314/34‑1 (MQ=37)
tACCGTGAAAGTGCTACAAAGATAAAGATTTGGctt > 1:4512586/1‑36 (MQ=255)
aCCGTGAAAGTGCTACAAAGATAAAGATTTGGCTTc > 1:1401959/1‑36 (MQ=255)
cGTGAAAGTGCTACAAAGATAAAGGTTTGGCTTCaa < 1:5054806/36‑1 (MQ=37)
gTGAAAGTGCTACAAAGATAAAGATTTGGCTTCaaa > 1:856375/1‑36 (MQ=255)
gAAAGTGCTACAAAGATAAAGATTTGGCTTCaaaaa < 1:1536091/36‑1 (MQ=255)
gAAAGTGCTACAAAGATAAAGATTTGGCTTCaaaaa < 1:2984700/36‑1 (MQ=255)
aaaGTGCTACAAAGATAAAGATTTGGCTTCAAAAAg < 1:3007571/36‑1 (MQ=255)
aaGTGCTACAAAGATAAAGATTTGGCTTCAAAAAGa < 1:8129467/36‑1 (MQ=255)
aGTGCTACAAAGATAAAGATTTGGCTTCAAAAAGaa > 1:3889545/1‑36 (MQ=255)
tGCTACAAAGATAAAGATTTGGCTTCAAAAAGaaaa > 1:542408/1‑36 (MQ=255)
tGCTACAAAGATAAAGATTTGGCTTCAAAAAGaaaa < 1:1117082/36‑1 (MQ=255)
tACAAAGATAAAGATTTGGCTTCAAAAAGAAAAata > 1:8446033/1‑36 (MQ=255)
cAAAGATAAAGATTTGGCTTCAAAAAGAAAAATATg < 1:1632446/36‑1 (MQ=255)
aagataaagatTTGGTTTCAAAAAGAAAAATATGTa > 1:5867990/1‑36 (MQ=255)
aagataaagatTTGGCTTCAAAAAGAAAAATATGTa > 1:1424064/1‑36 (MQ=255)
aagataaagatTTGGCTTCAAAAAGAAAAATATGTa < 1:8365085/36‑1 (MQ=255)
aagataaagatTTGGCTTCAAAAAGAAAAATATGTa > 1:7816136/1‑36 (MQ=255)
aagataaagatTTGGCTTCAAAAAGAAAAATATGTa > 1:6837389/1‑36 (MQ=255)
ataaagatTTGGCTTCAAAAAGAAAAATATGTAAcc > 1:6720271/1‑36 (MQ=255)
taaagatTTGGCTTCAAAAAGAAAAATATGTAACCa > 1:3711722/1‑36 (MQ=255)
taaagatTTGGCTTCAAAAAGAAAAATATGTAACCa < 1:1682546/36‑1 (MQ=255)
aggatTTGGTTTCAAAAAGAAAAATATGTAACCaaa > 1:4409851/3‑36 (MQ=255)
aagatTTGGCTTCAAAAAGAAAAATATGTAACCaaa < 1:958272/36‑1 (MQ=255)
aagatTTGGCTTCAAAAAGAAAAATATGTAACCaaa < 1:1120907/36‑1 (MQ=255)
agatTTGGTTTCAAAAAGAAAAATATGTAACCaaaa > 1:667111/1‑36 (MQ=255)
agatTTGGCTTCAAAAAGAAAAATATGTAACCaaaa < 1:7946103/36‑1 (MQ=255)
agatTTGGCTTCAAAAAGAAAAATATGTAACCaaaa > 1:6124938/1‑36 (MQ=255)
gatTTGGCTTCAAAAAGAAAAATATGTAACCAAAAg > 1:3051301/1‑36 (MQ=255)
atTTGGCTTCAAAAAGAAAAATATGTAACCAAAAGt < 1:6122165/36‑1 (MQ=255)
atTTGGATTCAAAAAGAAAAATATGTAACCAAAAGt > 1:4832558/1‑36 (MQ=255)
ttGGCTTAAAAAAGAAAAATATGTAACCAAAAGTaa < 1:5996535/36‑1 (MQ=37)
tGGCTTCAAAAAGAAAAATATGTAACCAAAAGTaaa > 1:7723256/1‑36 (MQ=255)
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TACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAAAGTAAA > REL606/1004218‑1004283
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
|