Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546959–547702 | 555923–555878 | 8177–8965 | 8 [7] | [0] 66 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 0 (0.000) | 41 (1.030) | 27/62 | NT | 100% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
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atcatACACTAAATCAGTAAGTTGGCAGCATCGCCc > 1:489247‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCCCCc > 1:834211‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:5898913‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:2691061‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:5795462‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:3298774‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:2235414‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:2173823‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:505201‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:1752338‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:3632515‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:3808837‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:1307707‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:5242265‑M2/36‑2 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:3396851‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:3058739‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:3906930‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca > 1:262516‑M2/1‑34 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:249326‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:2470487‑M2/36‑3 (MQ=255)
tcatACACTAAATCAGCAAGTTGGCAGCATCACCca < 1:5240436‑M2/36‑3 (MQ=255)
tcatAAACTAAATCAGTAAGTTGGCAGCATCACCca < 1:5200930‑M2/36‑3 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:5365345‑M2/36‑5 (MQ=255)
acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg < 1:5042855‑M2/36‑7 (MQ=255)
acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg < 1:3985948‑M2/36‑7 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc > 1:5208358‑M2/1‑29 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc > 1:5101822‑M2/1‑29 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc < 1:3139012‑M2/36‑8 (MQ=255)
acTAAATCAGTAAGTTGGCAGCATCACCcaaacgcg < 1:3627279‑M2/36‑9 (MQ=255)
acTAAATCAGTAAGATGGCAGCATCACCcaaacgcg < 1:2454518‑M2/36‑9 (MQ=255)
aaaTCAGTAAGTTGTCAGCATCACCcaaacgcgcat > 1:5661330‑M2/1‑25 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc < 1:785966‑M2/36‑13 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc < 1:3994867‑M2/36‑13 (MQ=255)
cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg > 1:1115020‑M2/1‑21 (MQ=255)
cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg > 1:4570926‑M2/1‑21 (MQ=255)
aGTAAGTTTGCAGCATCACCcaaacgcgcatcaggt > 1:5567835‑M2/1‑20 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt < 1:852418‑M2/36‑17 (MQ=255)
aGGAAGTTGGCAGCATCACCcaaacgcgcatcaggt > 1:1028598‑M2/1‑20 (MQ=255)
tAAGTTGGCAGCATCTCCcaaacgcgcatcaggtgc > 1:3434064‑M2/1‑18 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc > 1:3912990‑M2/1‑18 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa < 1:243389‑M2/36‑21 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca < 1:4667312‑M2/36‑23 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca > 1:919504‑M2/1‑14 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat > 1:4839836‑M2/1‑13 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat < 1:5240058‑M2/36‑24 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:1326017‑M2/36‑25 (MQ=255)
cagcaTCACCcaaacgcgcatcaggtgcaacataca > 1:3581696‑M2/1‑10 (MQ=255)
cagcaTCACCcaaacgcgcatcaggtgcaacataca > 1:817951‑M2/1‑10 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt > 1:1009596‑M2/1‑8 (MQ=255)
gcaTCACCcaaacgcgcatcaggggcaacatacatt > 1:2921671‑M2/1‑8 (MQ=255)
caTCACCcaaacgcgcatcaggtgcaacatacatta > 1:191197‑M2/1‑7 (MQ=255)
aTCACCcaaacgcgcatcaggtgcaacatacattaa > 1:4013049‑M2/1‑6 (MQ=255)
aTCACCcaaacgcgcatcaggtgcaacatacattaa > 1:926487‑M2/1‑6 (MQ=255)
tCACCcaaacgcgcatcaggtgcaacatacattaat < 1:3058747‑M2/36‑32 (MQ=255)
tCACCcaaacgcgcatcaggtgcaacatacattaat < 1:2538789‑M2/36‑32 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata < 1:473315‑M2/36‑33 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata > 1:4008739‑M2/1‑4 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata > 1:813466‑M2/1‑4 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa < 1:3155749‑M2/36‑34 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa < 1:726795‑M2/36‑34 (MQ=255)
aCCcaaacgcgcatcaggtgaaacatacattaataa < 1:1385163‑M2/36‑34 (MQ=255)
cccaaacgcgcatcaggtgcaacatacattaataaa > 1:94290‑M2/1‑2 (MQ=255)
ccaaacgcgcatcaggtgcaacatacattaataaat < 1:2102470‑M2/36‑36 (MQ=255)
ccaaacgcgaatcaggtgcaacatacattaataaat > 1:1925371‑M2/1‑1 (MQ=255)
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ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 23 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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