New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 619117 =NA (NA)9 (0.150) 8/66 NT 18.8% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997448 39 (0.630)coding (116/903 nt) ECB_02798 conserved hypothetical protein

CCTTAATGTTTATGATCCCCCGGAACGTTTTATCGCTTACATAAAAAAAAACAGAGAAAATCTGAACATCA  >  REL606/2997413‑2997483
                                   |                                   
ccTTAATGTTTATGATCCCCCGGAACGTTTTATCGC                                     >  1:6311097‑M2/1‑36 (MQ=255)
ccTTAATGTTTATGATCCCCCGGAACGTTTTATCGC                                     <  1:6965596‑M2/36‑1 (MQ=255)
 cctAATGTTTATGATCCCCCGGAACGTTTTATCGCt                                    <  1:5180875/34‑1 (MQ=255)
 cTTAATGTTTATGATCCCCCGGAACGTTTTATCGCt                                    <  1:5387061/36‑1 (MQ=255)
 cTTAATGTTTATGATCCCCCGGAACGTTTTATCGCt                                    <  1:8246491/36‑1 (MQ=255)
 cTTAATGTTTATGATCCCCCGGAACGTTTTATCGCt                                    <  1:7658241/36‑1 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   >  1:3734907/1‑36 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   <  1:7326747/36‑1 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   <  1:2096609/36‑1 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   >  1:3756215/1‑36 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   >  1:8131120/1‑36 (MQ=255)
  ttAATGTTTATGATCCCCCGGAACGTTTTATCGCtt                                   >  1:3910400/1‑36 (MQ=255)
  ttAATATTTATGATCCCCCTGAACGTATTTGCGCtt                                   >  1:70809/1‑36 (MQ=16)
   tAATGTTTATGATCCCCCGGAACGTTTTATCGCggt                                  <  1:7200254‑M2/36‑4 (MQ=255)
   tAATGTTTATGATCCCCCGGAACGTTTTATCGCTTa                                  >  1:4772945/1‑36 (MQ=255)
    aaTGTTTATGATCCCCCGGAACGTTTTATCGCTTAc                                 <  1:1684463/36‑1 (MQ=255)
     aTGTTTATTATCCCCCGGAACGTTTTATCGCTTACa                                <  1:7211778/36‑1 (MQ=255)
     aTGTTTATGATCCCCCGGAACGTTTTATCGCTTACa                                <  1:1637242/36‑1 (MQ=255)
     aTGTTTATGATCCCCCGGAACGTTTTATCGCTTACa                                >  1:842108/1‑36 (MQ=255)
     aTGTTTATGATCCCCCGGAACGTTTTATCGCTTACa                                >  1:6495372/1‑36 (MQ=255)
      tGTTTATGATCCCCCGGAACGTTTTATCGCTTACAt                               <  1:4411062/36‑1 (MQ=255)
      tGTTTATGATCCCCCGGAAAGTTTTATCGCTTAAAt                               >  1:3087713/1‑36 (MQ=37)
       gTTTATGATCCCCCGGAACGTTTTATCGCggtaatg                              <  1:359086‑M2/36‑8 (MQ=255)
       gTTTATGATCCCCCGGAACGTTTTATCGCTTACATa                              >  1:1006303/1‑36 (MQ=255)
        tttATGATCCCCCGGAACGTTTTATCGCTTACATaa                             >  1:5913168/1‑36 (MQ=255)
        tttATGATCCCCCGGAACGTTTTATCGCTTACATaa                             <  1:948783/36‑1 (MQ=255)
        tttATGATCCCCCGGAACGTTTTATCGCTTACATaa                             >  1:394007/1‑36 (MQ=255)
         ttATGATCCCCCGGAACGTTTTATCGCTTACATaaa                            <  1:7038172/36‑1 (MQ=255)
         ttATGATCCCCCGGAACGTTTTATCGCTTACATaaa                            >  1:4427999/1‑36 (MQ=255)
          tATGATCCCCCGGAACGTTTTATCGCTTACATaaaa                           >  1:904588/1‑36 (MQ=255)
            tGATCCCCCGGAACGTTTTATCGCTTACATaaaaaa                         >  1:6000112/1‑36 (MQ=255)
            tGATCCCCCGGAACGTTTTATCGCTTACATaaaaaa                         <  1:7861885/36‑1 (MQ=255)
                  cccGGAACGTTTTATCGCTTAAATaaaaaaaaaaca                   <  1:4719610/36‑4 (MQ=25)
                   ccGGAACGTTTTATCGCggtaatgactccaacttat                  >  1:6564195‑M2/1‑17 (MQ=255)
                   ccGGAACGTTTTATCGCTTACATAAAAAAAAACaga                  >  1:970016/1‑36 (MQ=255)
                   ccGGAACGTTTTATCGCTTACATAAAAAAAAACaga                  <  1:2371556/36‑1 (MQ=255)
                    cGGAACGTTTTATCGCTTACATAAAAAAAAACagag                 <  1:3253192/36‑1 (MQ=255)
                    cGGAACGTTTTATCGCTTACATAAAAAAAAACagag                 >  1:5328836/1‑36 (MQ=255)
                     ggAACGTTTTATCGCggtaatgactccaacttattg                <  1:1260521‑M2/36‑22 (MQ=255)
                     ggAACGTTTTATCGCTTACATAAAAAAAAACAgaga                >  1:7189536/1‑36 (MQ=255)
                       aaCGTTTTATCGCTTACATAAAAAAAAACAGAGaaa              >  1:3375153/1‑36 (MQ=255)
                       aaCGTTTTATCGCTTACATAAAAAAAAACAGAGaaa              <  1:810941/36‑1 (MQ=255)
                       aaCGTTTTATCGCTTACATAAAAAAAAACAGAGaaa              >  1:12857/1‑36 (MQ=255)
                       aaCGTTTTATCGCTTACATAAAAAAAAACAGAGaaa              <  1:1039247/36‑1 (MQ=255)
                        aCGTTTTATCGCggtaatgactccaacttattgata             <  1:1430125‑M2/36‑25 (MQ=255)
                        aCGTTTTATCGCggtaatgactccaacttattgata             <  1:2872668‑M2/36‑25 (MQ=255)
                        aCGTTTTATCGCTTGAATAAAAAAAAACAGAGaaaa             <  1:636222/36‑1 (MQ=37)
                          gTTTTATCGCggtaatgactccaacttattgatagt           <  1:6327718‑M2/36‑27 (MQ=255)
                          gTTTTATCGCTTACATAAAAAAAAACAGAGAAAATc           <  1:1348266/36‑1 (MQ=255)
                             ttATCGCggtaatgactccaacttattgatagtgtt        <  1:8459492‑M2/36‑30 (MQ=255)
                             ttATCGCTTACATAAAAAAAAACAGAGAAAATCTGa        >  1:376671/1‑36 (MQ=255)
                              tATCGCTTACATAAAAAAAAACAGAGAAAATCTGaa       <  1:1793281/36‑1 (MQ=255)
                              tATCGCTTACATAAAAAAAAACAGAGAAAATCTGaa       >  1:2989588/1‑36 (MQ=255)
                              tATCGCTTACATAAAAAAAAACAGAGAAAATCTGaa       >  1:3222640/1‑36 (MQ=255)
                               aTCGCggtaatgactccaacttattgatagtgtttt      <  1:3132913‑M2/36‑32 (MQ=255)
                               aTCGCTTACATAAAAAAAAACAGAGAAAATCTGAAc      >  1:2948343/1‑36 (MQ=255)
                               aTCGCTTACATAAAAAAAAACAGAGAAAATCTGAAc      >  1:2539973/1‑36 (MQ=255)
                                 cGCTTACATAAAAAAAAACAGAGAAAATCTGAACAt    >  1:5336768/1‑36 (MQ=255)
                                  gcggtaatgactccaacttattgatagtgttttatg   >  1:5409060‑M2/1‑2 (MQ=255)
                                  gcggtaatgactccaacttattgatagtgttttatg   >  1:7634067‑M2/1‑2 (MQ=255)
                                  gCTTACATAAAAAAAAACAGAGAAAATCTGAACATc   <  1:5034051/36‑1 (MQ=255)
                                   cggtaatgcctccaacttattgatagtgttttatgt  >  1:2542365‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaagttattgatagtgttttatgt  <  1:1821696‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  <  1:4691304‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  <  1:4624259‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:416381‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:4842046‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  <  1:4889275‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  <  1:5343039‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:2359469‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:759652‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:7569398‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:3745480‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  <  1:7299271‑M2/36‑36 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:6489617‑M2/1‑1 (MQ=255)
                                   cggtaatgactccaacttattgatagtgttttatgt  >  1:3114089‑M2/1‑1 (MQ=255)
                                   cTTACATAAAAAAAAACAGAGAAAATCTGAACATca  >  1:714310/1‑36 (MQ=255)
                                   cTTACATAAAAAAAAACAGAGAAAATCTGAACATca  >  1:6793969/1‑36 (MQ=255)
                                   |                                   
CCTTAATGTTTATGATCCCCCGGAACGTTTTATCGCTTACATAAAAAAAAACAGAGAAAATCTGAACATCA  >  REL606/2997413‑2997483

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG