New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 619117 =NA (NA)9 (0.150) 8/66 NT 15.8% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997448 48 (0.780)coding (116/903 nt) ECB_02798 conserved hypothetical protein

AACAAAACGCAGATTTTTTTGCCCATTTGTCGGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/619082‑619151
                                   |                                  
aaCAAAACGCAGATTTTTTTGCCCATTTGTCGGGCg                                    <  1:1740924/36‑1 (MQ=255)
aaCAAAACGCAGATTTTTTTGCCCATTTGTCGGGCg                                    >  1:2610274/1‑36 (MQ=255)
 aCAAAACGCATATTTTTTTGCCCATTTGTCGGGCgg                                   <  1:3506453/36‑1 (MQ=255)
 aCAAAACGCAGATTTTTTTGCCCATTTGTCGGGCgg                                   >  1:6558649/1‑36 (MQ=255)
  taatgtttatgatcccccggaacgttttatcgcGGt                                  <  1:7200254‑M1/3‑1 (MQ=255)
   aaaaCGCAGATTTTTTTGCCCATTTGTCGGGCGGTa                                 <  1:8462262/36‑1 (MQ=255)
    aaaCGCAGATTTTTTTGCCCATTTGTCGGGCGGTaa                                <  1:3742379/36‑1 (MQ=255)
    aaaCGCAGATTTTTTTGCCCATTTGTCGGGCGGTaa                                <  1:5986115/36‑1 (MQ=255)
     aaCGCAGATTTTTTTGCCCATTTGTCGGGCGGTAAt                               >  1:6551220/1‑36 (MQ=255)
     aaCGCAGATTTTTTTGCCCATTTGTCGGGCGGTAAt                               >  1:1579067/1‑36 (MQ=255)
      gtttatgatcccccggaacgttttatcgcGGTAATg                              <  1:359086‑M1/7‑1 (MQ=255)
      aCGCAGATTTTTTTGCCGGTTTGTCGGGCGGTAATg                              <  1:5414395/36‑1 (MQ=37)
      aCGCAGATTTTTTTGCCCATTTGTCGGGCGGTAATg                              >  1:890759/1‑36 (MQ=255)
        gCAGATTTTTTTGCCCATTTGTCGGGCGGTAATGAc                            >  1:7836465/1‑36 (MQ=255)
        gCAGATTTTTTTGCCCATTTGTCGGGCGGTAATGAc                            >  1:3578382/1‑36 (MQ=255)
         cAGATTTTTTTGCCCATTTGTCGGGCGGTAATGACt                           <  1:7078651/36‑1 (MQ=255)
         cAGATTTTTTTGCCCATTTGTCGGGCGGTAATGACt                           <  1:6650041/36‑1 (MQ=255)
         cAGATTTTTTTGCCCATTTGTCGGGCGGTAATGACt                           <  1:1362557/36‑1 (MQ=255)
           gATTTTTTTGCCCATTTGTCGGGCGGTAATGACTcc                         <  1:1862870/36‑1 (MQ=255)
           gATTTTTTTGCCCATTTGTCGGGCGGTAATGACTcc                         <  1:8185680/36‑1 (MQ=255)
           gATTTTTTTGCCCATTTGTCGGGCGGTAATGACTcc                         <  1:5896643/36‑1 (MQ=255)
              ttttttGCCCATTTGTCGGGCGGTAATGACTCCAAc                      >  1:6967340/1‑36 (MQ=255)
              ttttttGCCCATTTGTCGGGCGGTAATGACTCCAAc                      >  1:6169908/1‑36 (MQ=255)
               tttttGCCCATTTGTCGGGCGGTAATGACTCCAACt                     <  1:5606857/36‑1 (MQ=255)
               tttttGCCCATTTGTCGGGCGGTAATGACTCCAACt                     >  1:1111600/1‑36 (MQ=255)
                ttttGCCCATTTGTCGGGCGGTAATGACTCCAACtt                    >  1:795126/1‑36 (MQ=255)
                 tttGCCCATTTGTCGGGCGGTAATGACTCCAACTTa                   >  1:4196948/1‑36 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTCCAACTTAt                  <  1:6820136/36‑1 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTCCAACTTAt                  <  1:7020028/36‑1 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTCCAACTTAt                  <  1:5363201/36‑1 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTCCAACTTAt                  >  1:7054011/1‑36 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTCCAACTTAt                  <  1:2444624/36‑1 (MQ=255)
                  ttGCCCATTTGTCGGGCGGTAATGACTACAACTTAt                  >  1:5572270/1‑36 (MQ=255)
                  ccggaacgttttatcgcGGTAATGACTCCAACTTAt                  >  1:6564195‑M1/18‑36 (MQ=255)
                    ggaacgttttatcgcGGTAATGACTCCAACTTATTg                <  1:1260521‑M1/21‑1 (MQ=255)
                    gCCCATTTGTCGGGCGGTAATGACTCCAACTTATTg                <  1:1115228/36‑1 (MQ=255)
                    gCCCATTTGTCGGGCGGTAATGACTCCAACTTATTg                <  1:4881677/36‑1 (MQ=255)
                     cccATTTGTCGGGCGGTAATGACTCCAACTTATTGa               <  1:4189268/36‑1 (MQ=255)
                     cccATTTGTCGGGCGGTAATGACTCCAACTTATTGa               >  1:5850237/1‑36 (MQ=255)
                      ccATTTGTCGGGCGGTAATGACTCCAACTTATTGAt              >  1:2793655/1‑36 (MQ=255)
                      ccATTTGTCGGGCGGTAATGACTCCAACTTATTGAt              >  1:3658278/1‑36 (MQ=255)
                       cATTTGTCGGGCGGTAATGACTCCAACTTATTGATa             >  1:1293668/1‑36 (MQ=255)
                       acgttttatcgcGGTAATGACTCCAACTTATTGATa             <  1:1430125‑M1/24‑1 (MQ=255)
                       acgttttatcgcGGTAATGACTCCAACTTATTGATa             <  1:2872668‑M1/24‑1 (MQ=255)
                        aTTTGTCGGGCGGTAATGACTCCAACTTATTGATAg            <  1:1896448/36‑1 (MQ=255)
                        aTTTGTCGGGCGGTAATGACTCCAACTTATTGATAg            <  1:5083921/36‑1 (MQ=255)
                        aTTTGTCGGGCGGTAATGACTCCAACTTATTGATAg            <  1:2163541/36‑1 (MQ=255)
                        aTTTGTCGGGCGGTAATGACTCCAACTTATTGATAg            <  1:6456977/36‑1 (MQ=255)
                        aTTTGTCGGGCGGTAATGACTCCAACTTATTGATAg            <  1:5063866/36‑1 (MQ=255)
                         tttGTCGGGCGGTAATGACTCCAACTTATTGATAgt           >  1:712191/1‑36 (MQ=255)
                         tttGGCGGGCGGTAATGACTCCAACTTATTGATAgt           >  1:6481769/1‑36 (MQ=255)
                         gttttatcgcGGTAATGACTCCAACTTATTGATAgt           <  1:6327718‑M1/26‑1 (MQ=255)
                           tGTCGGGCGGTAATGACTCCAACTTATTGATAgtgt         >  1:966170/1‑36 (MQ=255)
                            ttatcgcGGTAATGACTCCAACTTATTGATAGTGtt        <  1:8459492‑M1/29‑1 (MQ=255)
                            gTCGGGCGGTAATGACTCCAACTTATTGATAGTGtt        >  1:7429838/1‑36 (MQ=255)
                            gTCGGGCGGTAATGACTCCAACTTATTGATAGTGtt        <  1:2442633/36‑1 (MQ=255)
                            gTCGGGCGGTAATGACTCCAACTTATTGATAGTGtt        >  1:2548618/1‑36 (MQ=255)
                             tCGGGCGGTAATGACTCCAACTTATTGATAGTGttt       <  1:5187490/36‑1 (MQ=255)
                             ccGGGCGGTAATGACTCTAACTTATTGATAGTGttt       <  1:416544/35‑1 (MQ=255)
                              cGGGCGGTAATGACTCCAACTTATTGATAGTGtttt      >  1:8050757/1‑36 (MQ=40)
                              atcgcGGTAATGACTCCAACTTATTGATAGTGtttt      <  1:3132913‑M1/31‑1 (MQ=255)
                                ggCGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:6208941/36‑1 (MQ=35)
                                ggCGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:8239778/36‑1 (MQ=35)
                                ggCGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:8169956/36‑1 (MQ=35)
                                ggCGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:7733712/36‑1 (MQ=35)
                                 gcGGTAATGACTCCAACTTATTGATAGTGTTTTATg   >  1:5409060‑M1/3‑36 (MQ=255)
                                 gcGGTAATGACTCCAACTTATTGATAGTGTTTTATg   >  1:7634067‑M1/3‑36 (MQ=255)
                                  cGGTAATGCCTCCAACTTATTGATAGTGTTTTATGt  >  1:2542365‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAAGTTATTGATAGTGTTTTATGt  <  1:1821696‑M1/35‑1 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:4624259‑M1/35‑1 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:4691304‑M1/35‑1 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:416381‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:5343039‑M1/35‑1 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:759652‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:7569398‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:3745480‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:7299271‑M1/35‑1 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:3114089‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:2359469‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:4842046‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:6489617‑M1/2‑36 (MQ=255)
                                  cGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:4889275‑M1/35‑1 (MQ=255)
                                   |                                  
AACAAAACGCAGATTTTTTTGCCCATTTGTCGGGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/619082‑619151

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG