breseq  version 0.24  revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6064,318,4800A→T16.0% 6.9 ‑15.2 0.096759adiAbiodegradative arginine decarboxylase
*REL6063,304,2750C→A16.4% 5.9 ‑17.0 0.092400sspBClpXP protease specificity‑enhancing factor
*REL6064,415,7130T→. 4.8% 4.6 ‑1.4 ‑0.462coding (851/1413 nt)cycAD‑alanine/D‑serine/glycine transporter
*REL6064,182,4570A→G10.5% 3.6 ‑16.9 0.075926zraSsensory histidine kinase in two‑component regulatory system with ZraR
*REL6063,369,8661.→G 4.8% 3.5 ‑2.8 0.063coding (138/390 nt)rpsK30S ribosomal protein S11
*REL6062,779,4300G→T11.8% 3.3 ‑12.7 0.093969cysJsulfite reductase, alpha subunit, flavoprotein
*REL6063,584,6150T→A 8.8% 3.0 ‑6.0 ‑0.070442yhiFpredicted DNA‑binding ranscriptional regulator
*REL6063,485,8930G→T 9.9% 2.6 ‑9.5 0.078787rtcBhypothetical protein
*REL6062,819,9980G→T 9.6% 1.7 ‑8.7 ‑0.073105xniexonuclease IX
*REL6063,171,6820G→T 8.7% 1.7 ‑9.5 ‑0.081286ygjTpredicted inner membrane protein, part of terminus
*REL6063,292,4780A→. 2.6% 1.6 ‑0.7 ‑0.177coding (2612/4554 nt)gltBglutamate synthase, large subunit
*REL6064,437,3660C→T 6.8% 1.4 ‑3.8 0.071534yjfFpredicted sugar transporter subunit: membrane component of ABC superfamily
*REL6061,485,4500A→G 7.1% 0.8 ‑5.4 0.088579ydcVpredicted spermidine/putrescine transporter subunit
*REL6064,231,6190T→C 8.4% 0.7 ‑5.3 0.076182ubiCchorismate pyruvate lyase
*REL6061,950,0381.→C 3.9% 0.6 ‑3.1 0.051coding (1424/1662 nt)tarmethyl‑accepting chemotaxis protein II
*REL6064,476,2330A→T 7.7% 0.6 ‑7.1 ‑0.067347idnOgluconate 5‑dehydrogenase
*REL606573,2020T→G100.0% 0.5 6287ECB_00530conserved hypothetical protein
*REL606573,2040C→G100.0% 0.4 6285ECB_00530conserved hypothetical protein
*REL6061,747,3010G→T 9.8% 0.4 ‑10.1 0.074961ydiKpredicted inner membrane protein
*REL606430,2980C→A100.0% 0.2 2490insL‑2putative transposase insL for insertion sequence IS186
*REL6061,929,9200T→. 2.5% 0.2 0.0 ‑0.081coding (319/567 nt)yecDpredicted hydrolase
*REL6062,495,4370A→C 4.1% 0.2 0.0 ‑0.072395eutQhypothetical protein
*REL6062,654,3620G→T 7.8% 0.2 ‑5.9 ‑0.0771220clpBprotein disaggregation chaperone
*REL6061,498,2800A→G100.0% 0.1 2197ECB_01413conserved hypothetical protein
*REL6062,527,9081.→C 3.7% 0.0 ‑0.7 ‑0.054coding (166/1581 nt)hyfFNADH dehydrogenase subunit N
*REL606429,8400C→A100.0% ‑0.1 1948insL‑2putative transposase insL for insertion sequence IS186
*REL606430,3490G→T100.0% ‑0.1 1439insL‑2putative transposase insL for insertion sequence IS186
*REL606430,5180T→G100.0% ‑0.1 1270insL‑2putative transposase insL for insertion sequence IS186
*REL606430,5850T→A100.0% ‑0.1 1203insL‑2putative transposase insL for insertion sequence IS186
*REL606557,8110G→A100.0% ‑0.1 1463ECB_00515conserved hypothetical protein
*REL606572,3320C→A100.0% ‑0.1 11157ECB_00530conserved hypothetical protein
*REL606572,3440C→G100.0% ‑0.1 11145ECB_00530conserved hypothetical protein
*REL606572,4300T→G100.0% ‑0.1 21059ECB_00530conserved hypothetical protein
*REL606573,1080G→T100.0% ‑0.1 1381ECB_00530conserved hypothetical protein
*REL606573,1320G→T100.0% ‑0.1 1357ECB_00530conserved hypothetical protein
*REL606573,2690C→T100.0% ‑0.1 1220ECB_00530conserved hypothetical protein
*REL606573,2790G→A100.0% ‑0.1 1210ECB_00530conserved hypothetical protein
*REL6061,111,1540A→C100.0% ‑0.1 1222insF‑1putative transposase for IS3
*REL6061,111,5220A→G100.0% ‑0.1 1210insE‑1putative transposase‑related protein
*REL6061,422,2000C→A100.0% ‑0.1 1545ECB_01342conserved hypothetical protein
*REL6061,422,2210C→A100.0% ‑0.1 1566ECB_01342conserved hypothetical protein
*REL6061,425,2030A→C100.0% ‑0.1 178pinRpredicted site‑specific recombinase