Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,370,027 | T→A | 91.6% | K117M (AAG→ATG) | rpsM ← | 30S ribosomal protein S13 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,370,027 | 0 | T→A | 91.6% | 10.8 ‑2.4 ‑0.7 | 71 | 350 | rpsM | 30S ribosomal protein S13 |
Reads supporting (aligned to +/- strand): new base (37/28): ref base (1/5): total (38/33) | ||||||||||
Fisher's exact test strand distribution p-value = 9.00e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.84e-01 |
CCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGCGGACCCTTACGGGTACGT > REL606/3369994‑3370059
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ccTTTGCCATTATTCAATCACCCCGATTATTTCATg > 1:7895408/1‑36 (MQ=255)
ccTTTGCCATTATTCAATCACCCCGATTATTTCATg < 1:2497544/36‑1 (MQ=255)
ccTTTGCCATTATTCAATCACCCCGATTATTTCATg < 1:947778/36‑1 (MQ=255)
cTTTGCCATTATTCAATCACCCCGATTATTTCATGa > 1:7223333/1‑36 (MQ=255)
cTTTGCCATTATTCAATCACCCCGATTATTTCATGa > 1:1653450/1‑36 (MQ=255)
cTTTGACATTATTCAATCACCCCGATTATTTCATGa > 1:4641127/1‑36 (MQ=37)
tttGCCATTATTCAATCACCCCGATTATTTCATGAt < 1:5608883/36‑1 (MQ=255)
tttGCCATTATTCAATCACCCCGATTATTTCATGAt < 1:3806021/36‑1 (MQ=255)
tttGCCATTATTCAATCACCCCGATTATTTCATGAt > 1:8207582/1‑36 (MQ=255)
ttGCCATTATTCAATCACCCCGATTATTTCATGATc < 1:6834100/36‑1 (MQ=255)
gtGCCATTATTCAATCACCCCGATTATTTCATGATc > 1:5405339/2‑36 (MQ=255)
tGCCATTATTCAATCACCCCGATTATTTCATGATCg > 1:1126312/1‑36 (MQ=255)
tGCCATTATTCAATCACCCCGATTATTTCATGATCg > 1:7049001/1‑36 (MQ=255)
gCCATTATTCAATCACCCCGATTATTTCATGATCgg > 1:3882779/1‑36 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCTTGATCGGt < 1:578939/36‑1 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCATGATCGGt < 1:6301894/36‑1 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCATGATCGGt > 1:6975972/1‑36 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCATGATCGGt > 1:313800/1‑36 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCATGATCGGt < 1:6911908/36‑1 (MQ=255)
ccATTATTCAATCACCCCGATTATTTCATGATCGGt < 1:2436526/36‑1 (MQ=255)
cATTATTCAATCACCCCGATTATTTCATGATCGGtt < 1:1755133/36‑1 (MQ=255)
attattCAATCACCCCGATTATTTCATGATCGGttt < 1:4328954/36‑1 (MQ=255)
attattCAATCACCCCGATTATTTCATGATCGGttt < 1:6133549/36‑1 (MQ=255)
ttattCAATCACCCCGATTATTTCATGATCGGtttt > 1:3318985/1‑35 (MQ=255)
ttattCAATCACCCCGATTATTTCATGATCGGTTTg > 1:5408331/1‑36 (MQ=255)
ttattCAATCACCCCGATTATTTCATGATCGGTTTg > 1:8122604/1‑36 (MQ=255)
tattCAATCACCCCGATTATTTCATGATCGGttttc > 1:824676/1‑34 (MQ=38)
tattCAATCACCCCGATTATTTCATGATCGGttttc > 1:3189987/1‑34 (MQ=38)
tattCAATCACCCCGATTATTTCATGATCGGttttc > 1:6137981/1‑34 (MQ=38)
tattCAATCACCCCGATTATTTCATGATCGGTTTgc > 1:7131411/1‑36 (MQ=255)
attCAATCACCCCGATTATTTCATGATCGGTTTgcg > 1:6123303/1‑36 (MQ=255)
attCAATCACCCCGATTATTTCATGATCGGTTTgcg < 1:3679511/36‑1 (MQ=255)
attCAATCACCCCGATTATTTCATGATCGGTTTgcg > 1:1327000/1‑36 (MQ=255)
ttCAATCACCCCGATTATTTCTTGATCGGTTTgcgc > 1:67752/1‑36 (MQ=255)
tCAATCACCCCGATTATTTCATGATCGGTTTGcgcg < 1:6875564/36‑1 (MQ=255)
cAATCACCCCGATTATTTCATGATCGGTTTGCGCgg < 1:4197345/36‑1 (MQ=255)
aaTCACCCCGATTATTTCATGATCGGTTTGCGCGGa > 1:2959158/1‑36 (MQ=255)
aTCACCCCGATTATTTCATGATCGGTTTTCGCGGAc > 1:6907458/1‑36 (MQ=37)
aTCACCCCGATTATTTCATGATCGGTTTGCGCGGAc < 1:5978188/36‑1 (MQ=255)
tCACCCCGATTATTTCATGATCGGTTTGCGCGGAcc < 1:7597345/36‑1 (MQ=255)
tCACCCCGATTATTTCATGATCGGTTTGCGCGGAcc < 1:4653213/36‑1 (MQ=255)
tCACCCCGATTATTTCATGATCGGTTTGCGCGGAcc < 1:6159080/36‑1 (MQ=255)
aCCCCGATTATTTCATGATCGGTTTGCGCGGACCCt > 1:4152755/1‑36 (MQ=255)
ccccGATTATTTCTTGATCGGTTTGCGCGGACCCtt < 1:1416639/36‑1 (MQ=255)
ccccGATTATTTCTTGATCGGTTTGCGCGGACCCtt < 1:839314/36‑1 (MQ=255)
ccccGATTATTTCATGATCGGTTTGCTCGGACCCtt > 1:3104800/1‑36 (MQ=38)
ccccGATTATTTCATGATCGGTTTGCGCGGACCCtt > 1:7630011/1‑36 (MQ=255)
ccccGATTAGTTCATGATCGGTTTGCGCGGACCCtt < 1:4441379/36‑1 (MQ=38)
ccGATTATTTCATGATCGGTTTGTGCGGACACTTat > 1:2054878/1‑35 (MQ=21)
ccGATTATTTCATGATCGGTTTGCGCGGACCCTTAc < 1:8261631/36‑1 (MQ=255)
ccGATTATTTCATGATCGGTTTGCGCGGACCCTTAc < 1:1346046/36‑1 (MQ=255)
ccGATTATTTCATGATCGGTTTGCGCGGACCCTTAc < 1:5624391/36‑1 (MQ=255)
cGATTATTTCATGATCGGTTTGCGCGGACCCTTACg < 1:7726250/36‑1 (MQ=255)
gATTATTTCATGATCGGTTTTCGCGGACCCTTACgg > 1:6569091/1‑36 (MQ=37)
gATTATTTCATGATCGGTTTGCGCGGACCCTTACgg > 1:5552601/1‑36 (MQ=255)
ttattTCTTGATCGGTTTGCGCGGACCCTTACGGGt < 1:5434058/36‑1 (MQ=255)
attTCTTGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:4432492/36‑1 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTGCGGGTAc > 1:5908162/1‑36 (MQ=38)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc > 1:1165084/1‑36 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:4277817/36‑1 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc > 1:500097/1‑36 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:8444599/36‑1 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:6928662/36‑1 (MQ=255)
attTCATGATCGGGTTGGGAGGATCATTACGGGTAc > 1:6395048/1‑36 (MQ=12)
tttCATGATCGGTTTGCGCGGACCCTTACGGGTACg > 1:7698585/1‑36 (MQ=255)
tttCATGATCGGTTTGCGCGGACCCTTACGGGTACg > 1:7147437/1‑36 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt < 1:1066401/36‑1 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt < 1:3287127/36‑1 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt > 1:3591943/1‑36 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt > 1:7538746/1‑36 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt > 1:6605189/1‑36 (MQ=255)
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CCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGCGGACCCTTACGGGTACGT > REL606/3369994‑3370059
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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