Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,279,523 | A→G | 19.7% | L527P (CTC→CCC) | yfaS ← | putative membrane protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,279,523 | 0 | A→G | 19.7% | 7.3 ‑2.5 ‑0.0 | 34 | 1580 | yfaS | putative membrane protein |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (17/10): total (24/10) | ||||||||||
Fisher's exact test strand distribution p-value = 7.82e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.80e-01 |
AACAAATAGCGGCTCGGTTTATCGGCGGCGGGGAGATTTAACGTCACATGACCGCTGGCGTCGGACACC > REL606/2279490‑2279558
|
aaCAAATAGCGGCTCGGTTTATCGGCGGCGGGgaga < 1:3933482/36‑1 (MQ=255)
aaCAAATAGCGGCTCGGTTTATCGGCGGCGGGgaga < 1:3360901/36‑1 (MQ=255)
cAAATAGCGGCTCGGTTTATCGGCGGCGGGGAGAtt < 1:7605641/36‑1 (MQ=255)
aaaTAGCGGCTCGGTTTATCGGCGGGGGGGGGGttt > 1:5950260/1‑36 (MQ=25)
aaaTAGCGGCTCGGTTTATCGGCGGGGGGGGGGttt > 1:1935547/1‑36 (MQ=25)
aaaTAGCGGCTCGGTTTATCGGCGGGGGGGGGGttt > 1:2792341/1‑36 (MQ=25)
gCGGCTCGGTTTATCGGCGGCGGGGGGATTTTACGt > 1:6256665/1‑36 (MQ=37)
gCGGCTCGGTTTATCGGCGGCGGGGAGATTTAACGt < 1:262214/36‑1 (MQ=255)
cGGCTCGGTTTATCGGCGGCGGGGGGGTTTAAAGtt > 1:7559982/1‑35 (MQ=21)
ggCTCGGTTTATCGGCGGCGGGGGGGTTTAAAGTca > 1:4691344/1‑36 (MQ=25)
gCTCGGTTTATCGGCGGCGGGGAGATTTAACGTcac < 1:7193246/36‑1 (MQ=255)
cTCGGTTTATCGGCGGCGGGGAGATTTAACGTcaca > 1:818239/1‑36 (MQ=255)
tCGGTTTATCGGCGGCGGGGAGATTTAACGTCACAt < 1:5278445/36‑1 (MQ=255)
cGGTTTATCGGCGGCGTGGAGATTTAACGTCACATg > 1:2510261/1‑36 (MQ=255)
cGGTTTATCGGCGGCGGGGAGGTTTTAAGTCACATg > 1:3273064/1‑36 (MQ=25)
cGGTTTATCGGCGGCGGGGAGATTTAACGTCACATg > 1:1480255/1‑36 (MQ=255)
gTTTATCGGCGGAGGGGAGATTTAACGTGACAGGat > 1:3664369/1‑35 (MQ=25)
tttATCGGCGGCGGGGAGATTTAACGTCACATGAcc < 1:2979066/36‑1 (MQ=255)
tttATCGGCGGCGGGGAGATTTAACGTCACATGAcc < 1:3936106/36‑1 (MQ=255)
ttATCGGCGGCGGGGAGATTTAACGTCACATGACCg < 1:4128408/36‑1 (MQ=255)
ttATCGGCGGCGGGGAGATTTAACGTCACATGACCg > 1:7640990/1‑36 (MQ=255)
ttATCGGCGGCGGGGAGATTTAACGTCAAATGACCg > 1:2901012/1‑36 (MQ=255)
tATCGGCGGCGGGGGGATTTAAAGTGACATGACCGc > 1:7124323/1‑36 (MQ=25)
aTCGGCGGCGGGGAGATTTAACGTCACATGACCGCt < 1:1406993/36‑1 (MQ=255)
tCGGCGGCGGGGAGATTTAACGTCACATGACCGCTg > 1:4356761/1‑36 (MQ=255)
cggcggcggGGAGATTTAACGTCACATGACCGCTgg > 1:8043623/1‑36 (MQ=255)
ggcggcggGGAGATTTAACGTCACATGACCGCTGGc > 1:5749566/1‑36 (MQ=255)
ggcggcggGGAGATTTAACGTCACATGACCGCTGGc < 1:4543977/36‑1 (MQ=255)
gcggcggGGAGATTTAACGTCACATGACCGCTGGCg > 1:6767448/1‑36 (MQ=255)
cggcggGGAGATTTAACGTCACATGACCGCTGGCGt < 1:508627/36‑1 (MQ=255)
gcggGGAGATTTAACGTCACATGACCGCTGGCGTCg > 1:1529092/1‑36 (MQ=255)
cggGGAGATTTAACGTCACATGACCGCTGGCGTCgg > 1:4822926/1‑36 (MQ=255)
ggggAGATTTAACGTCACATGACCGCTGGCGTCGGa > 1:1173595/1‑36 (MQ=255)
ggggAGATTTAACGTCACATGACCGCTGGCGTCGGa > 1:7587298/1‑36 (MQ=255)
ggggAGATTTAACGTCACATGAACGCTGGCGTCGGa > 1:3960479/1‑36 (MQ=255)
ggAGATTTAACGTCACATGACCGCTGGAGTCGGaca > 1:6842200/1‑36 (MQ=255)
gagaTTTAACGTCACATGACCGCTGGCGTCGGacac > 1:2908452/1‑36 (MQ=255)
gagaTTTAACGTCACATGACCGCTGGCGTCGGacac > 1:2533892/1‑36 (MQ=255)
gagaTTTAACGTCACATGACCGCTGGCGTCGGacac < 1:1293121/36‑1 (MQ=255)
gagaTTTAACGTCACATGACCGCTGGCGTCGGacac > 1:6396751/1‑36 (MQ=255)
agaTTTAACGTCACATGACCGCTGGCGTCGGACAcc > 1:4680841/1‑36 (MQ=255)
|
AACAAATAGCGGCTCGGTTTATCGGCGGCGGGGAGATTTAACGTCACATGACCGCTGGCGTCGGACACC > REL606/2279490‑2279558
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|