Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,298,508 | C→A | 43.1% | intergenic (+470/‑268) | ychE → / → oppA | predicted inner membrane protein/oligopeptide transporter subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,298,508 | 0 | C→A | 43.1% | 2.8 ‑3.4 0.0 | 16 | intergenic (+470/‑268) | ychE/oppA | predicted inner membrane protein/oligopeptide transporter subunit |
Reads supporting (aligned to +/- strand): new base (0/7): ref base (5/4): total (5/11) | ||||||||||
Fisher's exact test strand distribution p-value = 3.37e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAG > REL606/1298473‑1298539
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ttGGCGAGTATGAACCGCATTTGGTACTTTCCGGGc < 1:700275/36‑1 (MQ=255)
ttGGCGAGTAAGAACCGCATTTGGAACTTTCCGGGc > 1:2618653/1‑36 (MQ=255)
ggCGAGTAAGAACCGCATTTGGTACTTTCCGGGCaa < 1:90518/36‑1 (MQ=255)
ccGCGTTTGGACCTTCCCGGGAACCCGCCAGACGAt < 1:1393241/36‑1 (MQ=255)
gcttttGGTACTTTCCGGGAAACCGCCAGACGATTc < 1:1863000/33‑1 (MQ=38)
gCATTTGGTACTTTCCGGGCAACCGCCAGACGATTc > 1:602870/1‑36 (MQ=255)
cATTTGGTCCTTACCGGCAAACCGCCAGACGATTCt < 1:5701744/36‑1 (MQ=19)
cATTTGGTACTTTCCGGGCAACCGCCAGACGATTCt > 1:375535/1‑36 (MQ=255)
tttGGTACTTCCGGGGCAACCGCCAGACGATTCttt < 1:2419054/36‑1 (MQ=37)
ttGGTCCTTTCCGGGAAACCGCCAGACGATTCTTTa < 1:3649652/36‑1 (MQ=37)
ttGGTCCTCTCCGGGAAACCGCCAGACGATTCTTTa < 1:874888/36‑1 (MQ=25)
ttGGTACTTTGCGGAAAACCGCCAGACGATTCTTTa < 1:3384609/36‑1 (MQ=21)
tACTTTCCGGGCAACCGCCAGACGATTCTTTATTgg > 1:3387515/1‑36 (MQ=255)
ccTTTCGGGGCAACCGCCAGACGATTCTTTATTGGt < 1:3842024/35‑1 (MQ=255)
cTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTa < 1:4201167/36‑1 (MQ=255)
ccGGGCAACCGCCAGACGATTCTTTATTGGTAATga > 1:5142005/1‑36 (MQ=255)
ccGGGAAACCGCCAGACGATTCTTTATTGGTAATga < 1:694696/36‑1 (MQ=255)
cGGGCAACCGCCAGACGATTCTTTATTGGTAATgag > 1:2358789/1‑36 (MQ=255)
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TTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAG > REL606/1298473‑1298539
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 11 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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