Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,581,966 | 0 | C→A | 15.1% | 7.3 ‑18.5 ‑0.0 | 98 | 1075 | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/17): ref base (58/21): total (58/40) | ||||||||||
Fisher's exact test strand distribution p-value = 9.24e-09 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
Only 100 of 105 total aligned reads displayed.
TGGTGCAGACTATGCGCGATATCTCCACCAGTTCGCAGAAAATCGCCGATATTATCAGCGTAATTGACGGC > REL606/4581931‑4582001
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tggtgCAGACTATGCGCGATATCTCCACCAGTTCGc < 1:3547626/36‑1 (MQ=255)
tggtgCAGACTATGCGCGATATCTCCACCAGTTCGc < 1:2304724/36‑1 (MQ=255)
tggtgCAGACTATGCGCGATATCTCCACCAGTTCGc > 1:4754933/1‑36 (MQ=255)
tggtgCAGACTATGCGCGATATCTCCACCAGTTCGc < 1:5360582/36‑1 (MQ=255)
ggtgCAGCCTATGCGCGATATCTCCACCAGTTCGCa < 1:6567599/36‑1 (MQ=255)
ggtgCAGACTATGCGCGATATCTCCACCAGTTCGCa > 1:2869533/1‑36 (MQ=255)
ggtgCAGACTATGCGCGATATCTCCACCAGTTCGCa < 1:753278/36‑1 (MQ=255)
ggtgCAGACTATGCGCGATATCTCCACCAGTTCGCa > 1:1854586/1‑36 (MQ=255)
gtgCAGACTATGCGCGATATCTCCACCAGTTCGCAg < 1:6669507/36‑1 (MQ=255)
gCAGACTATGCGCGATATCTCCACCAGTTCGCAGaa < 1:2676837/36‑1 (MQ=255)
gCAGACTATGCGCGATATCTCCACCAGTTCGCAGaa < 1:6416714/36‑1 (MQ=255)
cAGACTATGCGCGATATCTCCACCAGTTCGCAGaaa > 1:7348775/1‑36 (MQ=255)
cAGACTATGCGCGATATCTCCACCAGTTCGCAGaaa > 1:3770941/1‑36 (MQ=255)
aGACTATGCGCGATATCTCCACCAGTTCGCCGaaaa > 1:4448389/1‑36 (MQ=255)
aGACTATGCGCGATATCTCCACCAGTTCGCAGaaaa > 1:2584826/1‑36 (MQ=255)
aGACTATGCGCGATATCTCCACCAGTTCGCAGaaaa > 1:6773215/1‑36 (MQ=255)
aGACTATGCGCGATATCTCCACCAGTTCGCAGaaaa > 1:2567921/1‑36 (MQ=255)
gACTATGCGCGATATCTCCACCAGTTCGCAGAAAAt < 1:1114440/36‑1 (MQ=255)
gACTATGCGCGATATCTCCACCAGTTCGCAGAAAAt > 1:2558409/1‑36 (MQ=255)
gACTATGCGCGATATCTCCACCAGTTCGCAGAAAAt > 1:1575420/1‑36 (MQ=255)
aCTATGCGCGATATCTCCCCCAGTTCTCAGGAAAtt > 1:208604/1‑35 (MQ=21)
aCTATGCGCGATATCTCCACCAGTTCGCAGAAAATc > 1:1400103/1‑36 (MQ=255)
aCTATGCGCGATATCTCCACCAGTTCGCAGAAAATc > 1:3955203/1‑36 (MQ=255)
aCTATGCGCGATATCTCCACCAGTTCGCAGAAAATc > 1:696085/1‑36 (MQ=255)
aCTATGCGCGATATCTCCACCAGTTCGCAGAAAATc < 1:4944100/36‑1 (MQ=255)
aCTATGCGCGATATCTCCACCAGTTCGCAGAAAATc < 1:1926430/36‑1 (MQ=255)
cTATGCGCGATATCTCCACCAGTTCGCAGAAAATCg < 1:4085916/36‑1 (MQ=255)
cTATGCGCGATATCTCCACCAGTTCGCAGAAAATCg < 1:2257930/36‑1 (MQ=255)
cTATGCGCGATATCTCCACCAGTTCGCAGAAAATCg > 1:179939/1‑36 (MQ=255)
tATGCGCGATATCTCCACCAGTTCGCAGAAAATCGc > 1:809853/1‑36 (MQ=255)
tATGCGCGATATCTCCACCAGTTCGCAGAAAATCGc < 1:2863594/36‑1 (MQ=255)
tATGCGCGATATCTCCACCAGTTCGCAGAAAATCGc > 1:2724328/1‑36 (MQ=255)
tATGCGCGATATCTCCACCAGTTCGCAGAAAATCGc < 1:2048751/36‑1 (MQ=255)
tATGCGCGATATCTCCACCAGTTCGCAGAAAATCGc > 1:1667905/1‑36 (MQ=255)
aTGCGCGATATCTCCACCAGTTCGCAGAAAATCGcc > 1:2850915/1‑36 (MQ=255)
aTGCGCGATATCTCCACCAGTTCGCAGAAAATCGcc > 1:2135152/1‑36 (MQ=255)
aTGCGCGATATCTCCACCAGTTCGCAGAAAATCGcc < 1:5591742/36‑1 (MQ=255)
aTGCGCGATATCTCCACCAGTTCGCAGAAAATCGcc > 1:2920754/1‑36 (MQ=255)
aTGCGCGATATCTCCACCAGTTCGCAGAAAATCGcc > 1:7136672/1‑36 (MQ=255)
tGCGCGATATCTCCACCAGTTCGCAGAAAATCGCCg > 1:4978383/1‑36 (MQ=255)
tGCGCGATATCTCCACCAGTTCGCAGAAAATCGCCg < 1:6344815/36‑1 (MQ=255)
tGCGCGATATCTCCACCAGTTCGCAGAAAATCGCCg > 1:6971286/1‑36 (MQ=255)
cgcgATATCTCCACCAGTTCGCAGAAAATCGCCGat > 1:615700/1‑36 (MQ=255)
cgcgATATCTCCACCAGTTCGCAGAAAATCGCCGat > 1:7210631/1‑36 (MQ=255)
cgcgATACCTCCACAGGTTCAAAAAAAATCGCCGat < 1:630635/36‑1 (MQ=9)
gcgATATCTCCACCAGTTCGCAGAAAATCGCCGata > 1:5834726/1‑36 (MQ=255)
gcgATATCTCCACCAGTTCGCAGAAAATCGCCGata > 1:357860/1‑36 (MQ=255)
gcgATATCTCCACCAGTTCGCAGAAAATCGCCGata > 1:6852089/1‑36 (MQ=255)
cgATATCTCCACCAGTTCGCAGAAAATCGCCGatat > 1:4502035/1‑36 (MQ=255)
cgATATCTCCACCAGTTCGCAGAAAATCGCCGatat > 1:6669122/1‑36 (MQ=255)
cgATATCTCCACCAGTTCGCAGAAAATCGCCGatat > 1:1159858/1‑36 (MQ=255)
cgATATCTCCACCAGTTCGAAGAAAATCGCCGatat < 1:1325440/36‑1 (MQ=255)
gATATCTCCACCAGTTCGCAGAAAATCGCCGAtatt > 1:1413513/1‑36 (MQ=255)
atatCTCCAGCAGTTCGCCGAAAATCGCCGAtatta < 1:1436027/36‑1 (MQ=37)
atatCTCCACCAGTTCGCAGAAAATCGCCGAtatta > 1:3138305/1‑36 (MQ=255)
atatCTCCACCAGTTCGCAGAAAATCGCCGAtatta > 1:5500435/1‑36 (MQ=255)
atatCTCCACCAGTTCGAAAAAAATCGCCGAtatta < 1:2169216/36‑1 (MQ=25)
tatCTCCACCAGTTCGCAGAAAATCGCCGAtattat > 1:6644872/1‑36 (MQ=255)
tatCTCCAACAGTTCGTAGAAACTCGCCGAtattat < 1:2565870/36‑1 (MQ=37)
tatCTCAACCAGTTCGAATAAAATCGCCGAtattat < 1:3728065/36‑1 (MQ=25)
atCTCCACCAGTTCGCAGAAAATCGCCGATATTATc > 1:6291820/1‑36 (MQ=255)
atCTCCACCAGTTCGCAGAAAATCGCCGATATTATc > 1:157744/1‑36 (MQ=255)
atCTCCACCAGTTCGCAGAAAATCGCCGATATTATc > 1:5646476/1‑36 (MQ=255)
atCTCCACCAGTTCGCAGAAAATCGCCGATATTATc > 1:6370931/1‑36 (MQ=255)
atCTCCACCAGTTCGAAGAAAATCGCCGATATTATc < 1:1787547/36‑1 (MQ=255)
cccccaccaGTTCGCAAAAAATCGCCGATATTATCa < 1:2323871/33‑1 (MQ=18)
ctcCACCAGTTCGCAGAAAATCGCCGATATTATCAg > 1:6743332/1‑36 (MQ=255)
ctcCACAAGTTCGAAAAAAGTCGCCGATATTATCAg < 1:2040142/36‑1 (MQ=19)
tcCACTATTGCGGAGAAAATCGCCGATATTATCAGc < 1:3548870/36‑1 (MQ=16)
tcCACCAGTTCGAAGAAAATCGCCGATATTATCAGc < 1:4957547/36‑1 (MQ=255)
cccaccaGTTCGAAAAAAATCGCCGATATTATCAGc < 1:2582140/35‑1 (MQ=18)
ccaccaGTTCGCAGAAAATCGCCGATATTATCAGCg > 1:2903772/1‑36 (MQ=255)
ccacaaGTTCGCAGAAAATCGCCGATATTATCAGCg < 1:5869065/36‑1 (MQ=255)
caccaTTTCGAAGAAAATCGCCGATATTATCAGCGt < 1:2418641/36‑1 (MQ=17)
accaGTTCGCAGAAAATCGCCGATATTATCAGCGTa > 1:4442088/1‑36 (MQ=255)
ccaGTTCGCAGAAAATCGCCGATATTATCAGCGTaa > 1:127629/1‑36 (MQ=255)
ccaGTTCGCAGAAAATCGCCGATATTATCAGCGTaa < 1:465562/36‑1 (MQ=255)
ccaGTTCGAAGAAAATCGCCGATATTATCAGCGTaa < 1:6517126/36‑1 (MQ=255)
ccaGTTCGAAGAAAATCGCCGATATTATCAGCGTaa < 1:5851482/36‑1 (MQ=255)
caGTTCGAAGAAAATCGCCGATATTATCAGCGTAAt < 1:3567326/36‑1 (MQ=255)
caGTTCGAAGAAAATCGCCGATATTATCAGCGTAAt < 1:4685834/36‑1 (MQ=255)
aGTTCGCAGAAAATCGCCGATATTATCAGCGTAAtt > 1:7352738/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:2593260/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:2363466/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:7009596/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:490978/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:5193786/1‑36 (MQ=255)
gTTCGCAGAAAATCGCCGATATTATCAGCGTAATTg > 1:6079202/1‑36 (MQ=255)
ttCGCAGAANATCGCCGATATTATCAGCGTAATTGa < 1:4566097/36‑1 (MQ=255)
ttCGCAGAAAATCGCCGATATTATCAGCGTAATTGa > 1:1801523/1‑36 (MQ=255)
ttCGCAGAAAATCGCCGATATGATAAGAGTAAttaa > 1:6250802/1‑34 (MQ=21)
ttCGAAGAAAATCGCCGATATTATCAGCGTAATTGa < 1:7120395/36‑1 (MQ=255)
ttCGAAGAAAATCGCCGATATTATCAGCGTAATTGa < 1:6417144/36‑1 (MQ=255)
tCGCAGAAAATCGCCGATATTATCAGCGTAATTGAc > 1:6249949/1‑36 (MQ=255)
cGCAGAAAATCGCCGATATTATCAGCGTAATTGACg < 1:5791229/36‑1 (MQ=255)
cGCAGAAAATCGCCGATATTATCAGCGTAATTGACg > 1:7497356/1‑36 (MQ=255)
gCAGAAAATCGCCGATATTATCAGCGTAATTGACgg > 1:2871131/1‑36 (MQ=255)
gCAGAAAATCGACGATATTATCAGCGTAATTGACgg > 1:6091886/1‑36 (MQ=255)
cAGAAAATCGCCGATATTATCAGCGTAATTGACGGc > 1:685378/1‑36 (MQ=255)
cAGAAAATCGCCGATATTATCAGCGTAATTGACGGc > 1:6189693/1‑36 (MQ=255)
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TGGTGCAGACTATGCGCGATATCTCCACCAGTTCGCAGAAAATCGCCGATATTATCAGCGTAATTGACGGC > REL606/4581931‑4582001
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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