Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,369,432 T→C 100% D50G (GAC→GGC)  rpsD ← 30S ribosomal protein S4

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,369,4320T→C100.0% 95.8 30149rpsD30S ribosomal protein S4
Reads supporting (aligned to +/- strand):  new base (17/12):  ref base (0/0):  total (18/12)

ACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTG  >  REL606/3369399‑3369460
                                 |                            
aCTTTTTGCTTTTCACGCAACTGCACACCATAGCca                            <  1:5297891/36‑1 (MQ=255)
  tttttGCTTTTCACGCAACTGCACACCATAGCcaga                          >  1:4191392/1‑36 (MQ=255)
    tttGCTTTTCACGCAACTGCACACCATAGCcagaca                        >  1:1979453/1‑36 (MQ=255)
    tttGCTTTTAACGCAACTGCACACCACAGCcagaca                        >  1:4625073/1‑36 (MQ=25)
      tGCTTTTCACGCAACTGCACACCATAGCcagacaga                      >  1:457559/1‑36 (MQ=255)
      tGCTTTTCACGCAACTGCACACCATAGCcagacaga                      >  1:5520734/1‑36 (MQ=255)
       tcTTTTCACGCAACTGCACACCATAGCCagacagac                     <  1:3608357/35‑1 (MQ=255)
       gCTTTTCACGCAACTGCACACCATAGCCagacagac                     <  1:4401811/36‑1 (MQ=255)
       gCTTTTCACGCAACTGCACACCATACCCagacagac                     >  1:1904181/1‑36 (MQ=38)
        cTTTTCACGCAACTGCACACCATAGCCAGACAGAcg                    >  1:2294471/1‑36 (MQ=255)
        cTTTTCACGCAACTGCACACCATAGCCAGACAGAcg                    <  1:2161205/36‑1 (MQ=255)
         ttttCACGCAACTGCACACCATAGCCAGACAGAcgc                   <  1:1257474/36‑1 (MQ=255)
         ttttCACGCAAATGCACACCATACACAGACAGAcgc                   >  1:2276359/1‑36 (MQ=25)
          tttCACGCAACTGCACACCATAGCCAGACAGAcgcg                  >  1:1341668/1‑36 (MQ=255)
            tCACGCAACTGCACACCATAGCCAGACAGACGCGGt                >  1:3702936/1‑36 (MQ=255)
            tCACGCAACTGCACACCATAGCCAGACAGACGCGGt                >  1:652226/1‑36 (MQ=255)
            tCACGCAACTGCACACCATAGCCAGACAGACGCGGt                >  1:3904344/1‑36 (MQ=255)
             cACGCAACTGCACACCATAGCCAGACAGACGCGGtt               <  1:557334/36‑1 (MQ=255)
             cACGCAACTGCACACCATAGCCAGACAGACGCGGtt               <  1:2257137/36‑1 (MQ=255)
             cACGCAACTGCACACCATAGCCAGACAGACGCGGtt               >  1:3406754/1‑36 (MQ=255)
                gCAACTGCACACCACAGCCAGACAGACGCGGGTTAc            >  1:3251021/1‑36 (MQ=25)
                  aaCTGCACACCATAGCCAGACAGACGCGGTTTAcga          >  1:3022043/1‑35 (MQ=255)
                  aaCTGCACACCATAGCCAGACAGACGCGGGTTAcga          >  1:796588/1‑35 (MQ=25)
                   aCTGCACACCATAGCCAGACAGACGCGGTTTAcgcg         >  1:1641903/1‑36 (MQ=255)
                     tGCACACCATAGCCAGACAGACGCGGTTTACGCGCa       <  1:2611967/36‑1 (MQ=255)
                      gCACAACATAGCAAGCCAGACGCGGTTTACGCGCAc      <  1:3170099/36‑1 (MQ=16)
                       cacaCCATAGCCAGACAGACGCGTTTTACGCGCAcc     <  1:4493547/36‑1 (MQ=37)
                       cacaCCATAGCCAGACAGACGCGGTTTACGCGCAcc     <  1:3789802/36‑1 (MQ=255)
                        acacCATAGCCAGACAGACGCGGTTTACGCGCACCg    >  1:75501/1‑36 (MQ=255)
                          acCATAGCCAGACAGACGCGGTTTACGCGCACCGTg  <  1:1060649/36‑1 (MQ=255)
                                 |                            
ACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTG  >  REL606/3369399‑3369460

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG