Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,131,564 | T→G | 5.5% | intergenic (‑223/+77) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,131,564 | 0 | T→G | 5.5% | 3.6 ‑2.7 ‑1.1 | 55 | intergenic (‑223/+77) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (20/32): total (23/32) | ||||||||||
Fisher's exact test strand distribution p-value = 6.75e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.85e-02 |
ATATGTGCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCGG > REL606/2131529‑2131599
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atatGTGCCAGCGCTGCGTAGGCATGATAAGACGCt < 1:2273578/36‑1 (MQ=255)
atatGTGCCAGCGCTGATTAGGCATGATAAGACGCt < 1:7375820/36‑1 (MQ=25)
atGTGCCAGCGCTGCGTAGGCATGATAAGACGCTTc < 1:6228169/36‑1 (MQ=255)
atGTGCCAGCGCTGCGTAGGCATGATAAGACGCTTc < 1:1639654/36‑1 (MQ=255)
atGTGCCAGCGCTGCGTAGGCATGATAAGACGCTTc < 1:2048155/36‑1 (MQ=255)
tgCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGc < 1:430607/36‑1 (MQ=255)
tgCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGc < 1:3146535/36‑1 (MQ=255)
tgCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGc < 1:2516271/36‑1 (MQ=255)
tgCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGc > 1:2175768/1‑36 (MQ=255)
tgCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGc < 1:1067985/36‑1 (MQ=255)
tgCCAGCGCTGCGTACGCATGATAAGACGCTTCAGc > 1:4990030/1‑36 (MQ=255)
gCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCg > 1:6084697/1‑36 (MQ=255)
gCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCg > 1:3644325/1‑36 (MQ=255)
gCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCg < 1:2950052/36‑1 (MQ=255)
gCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCg < 1:6256898/36‑1 (MQ=255)
ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt < 1:6139036/36‑1 (MQ=255)
ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt < 1:7377388/36‑1 (MQ=255)
ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt > 1:384296/1‑36 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTc > 1:7431136/1‑36 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTc < 1:6873381/36‑1 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGAGTc > 1:7498595/1‑36 (MQ=255)
cAGCGCTGCGTAGGCANGATAAGACGCTTCAGCGTc < 1:2140142/36‑1 (MQ=255)
cgcTGCGTAGGCATGATAAGACGCTTCAGCGTCGCa < 1:3615096/36‑1 (MQ=255)
cTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATc > 1:1103257/1‑36 (MQ=255)
tGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCa < 1:821657/36‑1 (MQ=255)
tGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCa > 1:6804786/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:1205812/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:6638387/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:2372831/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGACACGCATccg > 1:2448681/1‑34 (MQ=17)
gTAGGCATGATAAGACCATTCAGCGTCGCATAAGGc > 1:5749824/1‑36 (MQ=14)
tAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCa < 1:1224943/36‑1 (MQ=38)
tAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCa > 1:4335882/1‑36 (MQ=38)
aGGCATGATAAGACGCTTCAGCGTCGCATCAGGCAt < 1:692875/36‑1 (MQ=38)
gCATGATAAGACGCTTCAGCGTCGCATCAGGCATAg < 1:6671208/36‑1 (MQ=255)
gCATGATAAGACGCTTCAGCGTCGCATCAGGCATAg < 1:3764386/36‑1 (MQ=255)
cATGATAAGATGCNTCAGCGTCGCATCAGGCATAgg > 1:4428406/1‑36 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:1843797/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6846999/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6604558/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6123701/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:4369716/36‑1 (MQ=255)
aTAAGACGCTTCTGCGTCGCATCAGGCATAGGTTGc < 1:1498379/36‑1 (MQ=255)
aTAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGc > 1:5811566/1‑36 (MQ=255)
aaGACGCTTCAGCGTCGCATCAGGCATAGGTTGACg > 1:2283650/1‑36 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg < 1:6670155/36‑1 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg < 1:4356025/36‑1 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg > 1:4516250/1‑36 (MQ=255)
gACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGa < 1:2109609/36‑1 (MQ=255)
tcGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAt > 1:1664109/2‑36 (MQ=17)
aCGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGAt > 1:2984003/1‑36 (MQ=255)
aCGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGAt < 1:3955704/36‑1 (MQ=255)
cGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATg < 1:6665006/36‑1 (MQ=255)
cGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAta > 1:6432677/1‑35 (MQ=17)
cGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAta > 1:4501669/1‑35 (MQ=17)
cTTCAGCTTCGCATCAGGCATAGGTTGCCGGATgcg < 1:4814064/36‑1 (MQ=255)
cTTCAGCGTCGCATCAGGCATAGGTTGCCGGATgcg > 1:6896467/1‑36 (MQ=255)
cTTCAGCGTCGCATCAGGCATAGGTTGCCGGATgcg < 1:5941730/36‑1 (MQ=255)
ttCAGCGTCGCATCAGGCATAGGTTGCCGGATgcgg > 1:5149809/1‑36 (MQ=255)
ttCAGCGTCGCATCAGGCATAGGTTGCCGGATgcgg > 1:797325/1‑36 (MQ=255)
ttCAGCGTCGCATCAGGCAGAGGTTGCCGGATgcgg > 1:384614/1‑36 (MQ=255)
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ATATGTGCCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCGG > REL606/2131529‑2131599
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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