Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,801,076 | C→A | 9.4% | I99I (ATC→ATA) | ydjQ → | endonuclease of nucleotide excision repair |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,801,076 | 0 | C→A | 9.4% | 2.4 ‑1.5 ‑0.6 | 32 | 297 | ydjQ | endonuclease of nucleotide excision repair |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (16/13): total (16/16) | ||||||||||
Fisher's exact test strand distribution p-value = 2.26e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.33e-01 |
GAAATCGGCGCTCTGCTCCTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTT > REL606/1801041‑1801108
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gAAATCGGCGCTCTGCTCCTTGAAGCGCGATTAATc < 1:5053310/36‑1 (MQ=255)
gAAATCGGCGCTCTGCTCCTTGAAGCGCGATTAATc < 1:1440317/36‑1 (MQ=255)
aaTCGGCGCTCTGCTCCTTGAAGCGCGATTAATCaa > 1:1329092/1‑36 (MQ=255)
aTCGGCGCTCTGCTCCTTGAAGCGCGATTAATCaaa < 1:3047967/36‑1 (MQ=255)
aTCGGCGCTCTGCTCCTTGAAGCGCGATTAATCaaa < 1:226770/36‑1 (MQ=255)
tCGGCGCTCTGCTCCTTGAAGCGCGATTAATCAAAg > 1:7129778/1‑36 (MQ=255)
tCGGCGCTCTGCTCCTTGAAGCGCGATTAATCAAAg < 1:2850162/36‑1 (MQ=255)
tCGGCGCTCTGCTCCTTGAAGCGCGATTAATCAAAg > 1:8468426/1‑36 (MQ=255)
ggCGCTCTGCTCCTTGAAGCGCGATTAATCAAAGaa < 1:6773808/36‑1 (MQ=255)
gcactctGCTCCTTGAAGCGCGATTAATCAAAGaac < 1:7421611/33‑1 (MQ=255)
cgcTCTGCTCCTTGAAGCGCGATTAATCAAAGaaca < 1:155685/36‑1 (MQ=255)
cgcTCTGCTCCTTGAAGCGCGATTAATCAAAGaaca < 1:469627/36‑1 (MQ=255)
gcTCTGCTCCTTGAAGCGCGATTAATCAAAGaacaa > 1:1962311/1‑36 (MQ=255)
gcTCTGCTCCTTGAAGCGCGATTAATCAAAGaacaa < 1:5767891/36‑1 (MQ=255)
ctctGCTCCTTGAAGCGCGATTAATCAAAGaacaac < 1:4767756/36‑1 (MQ=255)
tctGCTCCTTGAAGCGCGATTAATCAAAGAacaaca < 1:6086392/36‑1 (MQ=255)
tctGCTCCTTGAAGCGCGATTAATCAAAGAacaaca < 1:5655560/36‑1 (MQ=255)
gCTCCTTGAAGCGCGATTAATCAAAGAACAACAGcc < 1:8271946/36‑1 (MQ=255)
cTCCTTGAAGCGCGATTAATCAAAGAACAACAGCCg > 1:6107584/1‑36 (MQ=255)
cTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTg > 1:71081/1‑36 (MQ=255)
tGAAGCGCGATTAATCAAAGAACAACAGCCGCTGtt > 1:1036330/1‑36 (MQ=255)
aaGCGCGATTAATAAAAGAACAACAGCCGCTGTTta < 1:3133764/36‑1 (MQ=255)
aaGCGAAATAAATAAAAAAACAACAGCCGCTGTTta < 1:4808251/36‑1 (MQ=16)
aGCGCGATTAATCAAAGAACAACAGCCGCTGTTtaa > 1:7274559/1‑36 (MQ=255)
gaaaTTAATAAAAAAAAAANAGCCGCTGTTtaataa < 1:1373410/33‑1 (MQ=16)
cgATTAATCAAAGAACAACAGCCGCTGTTTAATaaa > 1:384746/1‑36 (MQ=255)
gATTAATCAAAGAACAACTGCCGCTGTTTGATAAAc > 1:2559617/1‑36 (MQ=37)
gATTAATCAAAGAACAACAGCCGCTGTTTAATAAAc > 1:4877109/1‑36 (MQ=255)
gATTAATCAAAGAACAACAGCCGCTGTTTAATAAAc > 1:5976528/1‑36 (MQ=255)
gATTAATCAAAGAACAACAGCCGCTGTTTAATAAAc > 1:6849544/1‑36 (MQ=255)
gATTAATCAAAGAACAACAGCCGCTGTTTAATAAAc > 1:7263629/1‑36 (MQ=255)
ttAATCAAAGAACAACAGCAGCTGTTTAATAAACgg < 1:4119439/36‑1 (MQ=255)
tAATCAAAGAACAACAGCCGATGTTTAATAAACGGt > 1:6853547/1‑36 (MQ=255)
aaTCAAAGAACAACAGCCGCTGTTTAATAAACGGtt > 1:3811276/1‑36 (MQ=255)
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GAAATCGGCGCTCTGCTCCTTGAAGCGCGATTAATCAAAGAACAACAGCCGCTGTTTAATAAACGGTT > REL606/1801041‑1801108
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|