Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,288,092 | G→A | 91.1% | R57C (CGT→TGT) | arcB ← | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,288,092 | 0 | G→A | 91.1% | 5.3 ‑0.4 ‑0.2 | 56 | 169 | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Reads supporting (aligned to +/- strand): new base (33/18): ref base (4/1): total (37/19) | ||||||||||
Fisher's exact test strand distribution p-value = 6.52e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.85e-01 |
ACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCA > REL606/3288059‑3288124
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aCGGCGTAATCAGCAAACCAAAGAAGATAGAACGaa > 1:6483560/1‑36 (MQ=255)
aCGGCGTAATCAGCAAACCAAAGAAGATAGAACAaa > 1:1419120/1‑36 (MQ=255)
aCGGCGTAATAAGCAAACCAAAGAAGATAGAACAaa < 1:1451968/36‑1 (MQ=37)
cGGCGTAATCAGCAAACCAAAGAAGATAGAACAAAt > 1:8296480/1‑36 (MQ=255)
ggCGTAATCAGCAAACCAAAGAAGATAGAACAAATa < 1:7203877/36‑1 (MQ=255)
gTAATCAGCAAACCAAAGAAGATAGAACAAATAACa < 1:5365357/36‑1 (MQ=255)
gTAATCAGCAAACCAAAGAAGATAGAACAAATAACa > 1:7424133/1‑36 (MQ=255)
tAATCAGCAAACCAAAGAAGATAGAACAAATAACAt > 1:5565318/1‑36 (MQ=255)
tAATCAGCAAACCAAAGAAGATAGAACAAATAACAt > 1:8457003/1‑36 (MQ=255)
caTCAGAAAACAAAAGAAGATAGAACAAATAACATc < 1:3078609/35‑1 (MQ=25)
aaTCAGCAAACCAAAGAAGATAGAACAAATAACATc > 1:5031259/1‑36 (MQ=255)
aTCAGCAAACAAAAGAAGATAGAACAAATAACATCa < 1:631758/36‑1 (MQ=37)
aTCAGCAAAACAAAGAAGATAGAACAAATAACATCa < 1:5653472/36‑1 (MQ=37)
tCAGCAAACAAAAGAAGATAGAACAAATAACATCaa < 1:6158576/36‑1 (MQ=37)
cAGAAAACCAAAGAAGATAGAACAAATAACATCAAt < 1:6645534/36‑1 (MQ=37)
aaGCAAAACAAAGAAGATAGAACAAATAACATCAAt < 1:7908326/35‑1 (MQ=37)
aGCAAACCAAAGAAGATAGAACAAATAACATCAATg > 1:6216736/1‑36 (MQ=255)
aaaCCAAAGAAGATAGAACGAATAACATCAATGCtt > 1:7771129/1‑36 (MQ=255)
aaaCCAAAGAAGATAGAACGAATAACATCAATGCtt > 1:3802920/1‑36 (MQ=255)
aaaCCAAAGAAGATAGAACAAATAACATCAATGCtt > 1:2007635/1‑36 (MQ=255)
aaaCCAAAGAAGATAGAACAAATAACATCAATGCtt > 1:8076397/1‑36 (MQ=255)
aaaCCAAAGAAGATAGAACAAATAACATCAATGCtt > 1:3883526/1‑36 (MQ=255)
aaaACAAAGAAGATAGAACAAATAACATCAATGCtt < 1:2963251/36‑1 (MQ=37)
aaCCAAAGAAGATAGAACAAATAACATCAATGCttt > 1:1360775/1‑36 (MQ=255)
aaCCAAAGAAGATAGAACAAATAACATCAATGCttt > 1:2347393/1‑36 (MQ=255)
aaCCAAAGAAGATAGAACAAATAACATCAATGCttt > 1:1066318/1‑36 (MQ=255)
aCCAAAGAAGATAGAACGAATAACATCAATGCTTTc < 1:518693/36‑1 (MQ=255)
aCCAAAGAAGATAGAACAAATAACATCAATGCTTTc > 1:5689871/1‑36 (MQ=255)
ccAAAGAAGATAGAACAAATAACATCAATGCTTTCg > 1:2306469/1‑36 (MQ=255)
cAAAGAAGATAGAACAAATAACATCAATGCTTTCGa < 1:5133860/36‑1 (MQ=255)
aaaGAAGATAGAACAAATAACATCAATGCTTTCGAc > 1:8413026/1‑36 (MQ=255)
aaaGAAGATAGAACAAATAACATCAATGCTTTCGAc > 1:2692649/1‑36 (MQ=255)
aaaGAAGATAGAACAAATAACATCAATGCTTTCGAc > 1:514067/1‑36 (MQ=255)
aaaGAAGATAGAACAAATAACATCAATGCTTTCGAc > 1:1147349/1‑36 (MQ=255)
agaagaTAGAACAAATAACATCAATGCTTTCGACCt > 1:6567312/1‑36 (MQ=255)
agaagaTAGAACAAATAACATCAATGCTTTCGACCt > 1:7568554/1‑36 (MQ=255)
gaagaTAGAACAAATAACATCAATGCTTTCGACCTg > 1:7256122/1‑36 (MQ=255)
aagaTAGAACAAATAACATCAATGCTTTCGACCTGa > 1:5703301/1‑36 (MQ=255)
aagaTAGAACAAATAACATCAATGCTTTCGACCTGa > 1:3478911/1‑36 (MQ=255)
aagaTAGAACAAATAACATCAATGCTTTCGACCTGa < 1:222227/36‑1 (MQ=255)
aagaTAGAACAAATAACATCAATGCTTTCGACCTGa < 1:8131288/36‑1 (MQ=255)
aagaTAGAACAAATAACATCAATGCTTTCGACCTGa < 1:8120404/36‑1 (MQ=255)
agaTAGAACAAATAACATCAATGCTTTCGACCTGAc > 1:830932/1‑36 (MQ=255)
agaTAGAACAAATAACATCAATGCTTTCGACCTGAc > 1:1491855/1‑36 (MQ=255)
gaTAGAACGAATAACATCAATGCTTTCGACCTGAcc > 1:2634583/1‑36 (MQ=255)
aTAGAACAAATAACATCAATGCTTTCGACCTGACCa > 1:2091877/1‑36 (MQ=255)
aTAGAACAAATAACATCAATGCTTTCGACCTGACCa > 1:2699835/1‑36 (MQ=255)
tAGAACAAATAACATCAATGCTTTCGACCTGACCAt > 1:1803653/1‑36 (MQ=255)
tAGAACAAATAACATCAATGCTTTCGACCTGACCAt > 1:7118853/1‑36 (MQ=255)
aGAACAAATAACATCAATGCTTTCGACCTGACCATg < 1:7617548/36‑1 (MQ=255)
gAACAAATAACATCAATGCTTTCGACCTGACCATgc < 1:1619357/36‑1 (MQ=255)
gAACAAATAACATCAATGCTTTCGACCTGACCATgc < 1:7342867/36‑1 (MQ=255)
gAACAAATAACATCAATGCTTTCGACCTGACCATgc > 1:697768/1‑36 (MQ=255)
gAACAAATAACATCAATGCTTTCGACCTGACCATgc > 1:2803789/1‑36 (MQ=255)
gAACAAATAACATCAATGCTTTCGACCTGACCATgc < 1:852580/36‑1 (MQ=255)
aaCAAATAACATCAATGCTTTCGACCTGACCATgca > 1:926412/1‑36 (MQ=255)
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ACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCA > REL606/3288059‑3288124
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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