New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 320338026 (0.520)6 (0.120) 4/58 NT 16.2% intergenic (+828/+174) yhaC/garK hypothetical protein/glycerate kinase I
?REL606 = 4141016 36 (0.600)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

CCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTGGGTTTCCCCC  >  REL606/3203346‑3203415
                                  |                                    
ccTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGt                                     <  1:4195994/36‑1 (MQ=255)
ccTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGg                                     >  1:6106475‑M1/1‑35 (MQ=255)
 cTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGtt                                    <  1:6865102/36‑1 (MQ=255)
 cTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGgt                                    >  1:137695‑M1/1‑34 (MQ=255)
  ttACCTGATCCCGCTTGCGCGGGCCATCGGCGGgtt                                   >  1:2608735‑M1/1‑33 (MQ=255)
    aCCTGATCCCGCTTGCGCGGGCCATCGGCGGgtttg                                 >  1:7487252‑M1/1‑31 (MQ=255)
    aCCTGATCCCGCTTGCGCGGGCCATCGGCGGgttgt                                 >  1:3739923‑M1/1‑31 (MQ=255)
       tGATCCCGCTTGCGCGGGCCATCGGCGGTTTGctct                              <  1:737234/36‑1 (MQ=255)
        gATCCCTCTTGCGCTGGCCATCGGCGGTTTGctct.c                            <  1:5307585/36‑1 (MQ=37)
         aTCCCGCTTGCGCGGGCCATCGGCGGTTTGctct.ct                           <  1:817837/36‑1 (MQ=255)
          tCCCGCTTGCGCGGGCCATCGGCGGgtttttttttt                           >  1:3839781‑M1/1‑25 (MQ=255)
            ccGCTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGtt                        <  1:2694041/36‑1 (MQ=255)
             cGCTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTg                       <  1:3524785/36‑1 (MQ=255)
              gCTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGc                      <  1:4398923/36‑1 (MQ=255)
               catGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGCa                     <  1:4417374/34‑1 (MQ=255)
               cTTGCGCGGGCCATCGGCGGTTTTGTCT.CTTttttc                     >  1:7794137/1‑33 (MQ=16)
               cTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGCa                     <  1:5754822/36‑1 (MQ=255)
                 tGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGCACt                   <  1:2539483/36‑1 (MQ=255)
                   cgcgGGCCATCGGCGGTTTGCTCT.CTGTTGCACTgg                 <  1:62689/36‑1 (MQ=255)
                     cgGGCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTc               <  1:7136295/36‑1 (MQ=255)
                     cgGGCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTc               <  1:6977318/36‑1 (MQ=255)
                     cgGGCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTc               <  1:3258010/36‑1 (MQ=255)
                      gggCCATCGGCGGGTTTGTCTCCTTTTGCCCTGGtt               >  1:7900476/1‑35 (MQ=0)
                       ggCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTCGt             <  1:5942366/36‑1 (MQ=255)
                        gCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTg            <  1:3607455/36‑1 (MQ=255)
                        gCCAACGGCGGTTTGCTCT.CTGTTGCACTGGTCGTg            <  1:7326825/36‑1 (MQ=255)
                          cATCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTggg          <  1:1885979/36‑1 (MQ=255)
                           gtCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTGGGt         <  1:1674495/35‑1 (MQ=255)
                           aTCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTGGGt         <  1:1530279/36‑1 (MQ=255)
                            tCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTGGGtt        <  1:6046465/36‑1 (MQ=255)
                             cggcgggttttttctttttgttgcgctcttacgccc        <  1:5990074‑M1/36‑31 (MQ=255)
                             cggcggTTTGCTCT.CTGTTGCACTGGTCGTGGGttt       <  1:5533165/36‑1 (MQ=255)
                               tcggtttttttctttttgttgcgctcttacgcccat      <  1:6208368‑M1/35‑33 (MQ=255)
                               gcggTTTGCTCT.CTGTTGCACTGGTCGTGGGTTTcc     <  1:6060749/36‑1 (MQ=255)
                                cgggttttttctttttgttgcgctcttacgcccatc     <  1:6895984‑M1/36‑34 (MQ=255)
                                 gggttttttctttttgttgcgctcttacgcctatca    >  1:7280637‑M1/1‑2 (MQ=255)
                                 gggttttttctttttgttgcgctcttacgcccatca    <  1:3051194‑M1/36‑35 (MQ=255)
                                  ggttttttctttttgttgcgctcttacgcccatcac   <  1:6153664‑M1/36‑36 (MQ=255)
                                  ggttttttctttttgttgcgctcttacgcccatcac   >  1:301733‑M1/1‑1 (MQ=255)
                                  ggttttttctttttgttgcgctcttacgcccatcac   <  1:3830225‑M1/36‑36 (MQ=255)
                                  gTTTGCTCT.CTGTTGCACTGGTCGTGGGTTTccccc  <  1:7676058/36‑1 (MQ=255)
                                  |                                    
CCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCT.CTGTTGCACTGGTCGTGGGTTTCCCCC  >  REL606/3203346‑3203415

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG