New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 588495 =NA (NA)40 (0.940) 30/66 NT 100% noncoding (1/1977 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

Only 100 of 218 total aligned reads displayed.

GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA  >  REL606/588460‑588530
                                   |                                   
gccgtcagaggcttcgagggtttcgtcgaagttgtt                                     <  1:2199506‑M1/1‑1 (MQ=255)
gccgtcagaggcttcgaggatttcgtcgaagttgtt                                     <  1:2083104‑M1/1‑1 (MQ=255)
gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                     >  1:3293066/1‑36 (MQ=255)
gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                     >  1:4102702/1‑36 (MQ=255)
ctggcttcttctttggttgatgactgggcagaaagt                                     >  1:2688501‑M1/36‑36 (MQ=255)
 tggcttcttctttggtggatgactgggcagaaagtg                                    <  1:699593‑M1/2‑1 (MQ=255)
 aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                                    >  1:5700947/1‑36 (MQ=255)
  ggcttcttctttggtggatgactgggcagaaagtgt                                   >  1:1935244‑M1/34‑36 (MQ=255)
  ggcttcttctttggtggatgactgggcagaaagtgt                                   <  1:3912605‑M1/3‑1 (MQ=255)
  ggcttcttctttggtggatgaatgggcagaaagtgt                                   >  1:1767284‑M1/34‑36 (MQ=255)
    gtagtatccacaccaagccggaattatccggTGTAc                                 <  1:4341235‑M1/5‑1 (MQ=255)
    cttcttctttggtggatgactgggcagaaagTGTAc                                 >  1:2890612‑M1/32‑36 (MQ=255)
     ttcttctttggtggatgactgggcagaaagTGTACt                                >  1:3762210‑M1/31‑36 (MQ=255)
      ctttctttggtggatgactgggcagaaagTGTACTg                               >  1:5359568‑M1/30‑36 (MQ=255)
       gaggcttcgaggatttcgtcgaagttgtTGTACTGc                              <  1:4845299‑M1/8‑1 (MQ=255)
        ttctttggtggatgactgggcagaaagTGTACTGCa                             <  1:5304408‑M1/9‑1 (MQ=255)
        tatccacaccaagccggaattatccggGGTACTGCa                             <  1:869381‑M1/9‑1 (MQ=255)
        cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                             >  1:154312/1‑36 (MQ=255)
        cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                             >  1:1294378/1‑36 (MQ=255)
        cAGAAAAAAACGGGTTAAGCTTCAAGTTGTACTGCa                             >  1:4386704/1‑36 (MQ=255)
         tctttggtggatggctgggcagaaagTGTACTGCAc                            >  1:46851‑M1/27‑36 (MQ=255)
         tctttggtggatgactgggcagaaagTGTACTGCAc                            <  1:3118425‑M1/10‑1 (MQ=255)
         ggcttcgaggatttcgtcgaagttgtTGTACTGCAc                            >  1:1069879‑M1/27‑36 (MQ=255)
         ggcttcgaggatttcgtcgaagttgtTGTACTGCAc                            >  1:4214161‑M1/27‑36 (MQ=255)
         ggcttcgaggatttcgtcgaagttgtTGTACTGCAc                            <  1:2638503‑M1/10‑1 (MQ=255)
         ggcttcgaggatttcgtcgaagttgtTGTACTGCAc                            <  1:1892253‑M1/10‑1 (MQ=255)
         aGAAAAAAACGGGTTCAGCTTCAATTTGTACTGCAc                            <  1:2433920/36‑1 (MQ=255)
          tccacaccaagccggaattatccggTGTACTGCAcc                           >  1:1189543‑M1/26‑36 (MQ=255)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                           >  1:3606254/1‑36 (MQ=255)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                           >  1:3025406/1‑36 (MQ=255)
          ctttggtggatgactgggcagaaagTGTACTGCAcc                           <  1:5090981‑M1/11‑1 (MQ=255)
           ccacaccaagccggaattatccggTGTACTGCAccc                          >  1:1496496‑M1/25‑36 (MQ=255)
            ttggtggatgactgggcagaaagTGTACTGCACCCa                         <  1:5558911‑M1/13‑1 (MQ=255)
            cacaccaagccggaattatccggTGTACTGCACCCa                         <  1:525096‑M1/13‑1 (MQ=255)
             tcgaggatttcgtcgaagttgtTGTACTGCACCCAt                        >  1:5920655‑M1/23‑36 (MQ=255)
               gtggatgactgggcagaaagTGTACTGCACCCAttt                      <  1:3030726‑M1/16‑1 (MQ=255)
                tggatgactgggcagaaagTGTACTGCACCCAtttt                     <  1:4604750‑M1/17‑1 (MQ=255)
                aggatttcgtcgaagttgtTGTACTGCACCCAtttt                     <  1:4492684‑M1/17‑1 (MQ=255)
                aggatttcgtcgaagttgtTGTACTGCACCCAtttt                     <  1:2107502‑M1/17‑1 (MQ=255)
                aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                     >  1:65530/1‑36 (MQ=255)
                 ggatttcgtcgaagttgtTGTACTGCACCCATTttg                    >  1:3213291‑M1/19‑36 (MQ=255)
                 ggatgactgggcagaaagTGTACTGCACTCATTttg                    <  1:126203‑M1/18‑1 (MQ=255)
                 ggatgactgggcagaaagTGTACTGCACCCATTttg                    >  1:3341192‑M1/19‑36 (MQ=255)
                 ggatgactgggcagaaagTGTACTGCACCCATTttg                    <  1:5858404‑M1/18‑1 (MQ=255)
                 caagccggaattatccggTGTACTGCACCCATTttg                    >  1:5585103‑M1/19‑36 (MQ=255)
                 caagccggaattatccggTGTACTGCACCCATTttg                    >  1:2356863‑M1/19‑36 (MQ=255)
                 caagccggaattatccggTGTACTGCACCCATTttg                    <  1:3536269‑M1/18‑1 (MQ=255)
                 aCGGGTTCAGCTTCAAGTTGTACTGCACCCATTttg                    <  1:1666061/36‑1 (MQ=255)
                  gatttcgtcgaagttgtTGTACTGCACCCATTttgt                   >  1:238384‑M1/18‑36 (MQ=255)
                  gatgactgggcagaaagTGTACTGCACCCATTttgt                   >  1:1266429‑M1/18‑36 (MQ=255)
                  aagccggaattatccggTGTACTGCACCCATTttgt                   >  1:5751756‑M1/18‑36 (MQ=255)
                  aagccggaattatccggTGTACTGCACCCATTttgt                   <  1:4230018‑M1/19‑1 (MQ=255)
                   atgactgggcagaaagTGTACTGCACCCATTttgtt                  <  1:5116024‑M1/20‑1 (MQ=255)
                   atgactgggcagaaagTGTACTGCACCCATTttgtt                  <  1:1480623‑M1/20‑1 (MQ=255)
                    ggTTCAGCTTCAAGTTGTACTGCACCCATTttgttg                 >  1:1385709/1‑36 (MQ=255)
                     ttcgtcgaagttgtTGTACTGCACCCATTTTGTTgg                <  1:2992076‑M1/22‑1 (MQ=255)
                     ttcgtcgaagttgtTGTACTGCACCCATTTTGTTgg                <  1:3649576‑M1/22‑1 (MQ=255)
                     gactgggcagaaagCGTACTGCACCCATTTTGTTgg                <  1:5227793‑M1/22‑1 (MQ=255)
                      cggaattatccggTGTACTGCACCCATTTTGTTGGa               >  1:5605697‑M1/14‑36 (MQ=255)
                       tCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc              <  1:621108/36‑1 (MQ=255)
                       tCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGAc              >  1:4788067/1‑36 (MQ=255)
                       ggaattatccggTGTACTGCACCCATTTTGTTGGAc              <  1:5536741‑M1/24‑1 (MQ=255)
                       cgtcgaagttgtTGTACTGCACCCATTTTGTTGGAc              >  1:5166559‑M1/13‑36 (MQ=255)
                        tgggcagaaagTGTACTGCACCCATTTTGTTGGACg             <  1:361038‑M1/25‑1 (MQ=255)
                        tgggcagaaagTGTACTGCACCCATTTTGTTGGACg             <  1:538007‑M1/25‑1 (MQ=255)
                        tgggcagaaagTGTACTGCACCCATTTTGTTGGACg             >  1:4324547‑M1/12‑36 (MQ=255)
                         gggcagaaagTGTACTGCACCCATTTTGTTGGACGa            <  1:5408728‑M1/26‑1 (MQ=255)
                          ggcagaaagTGTACTGCACCCATTTTGTTGGACGAt           >  1:81350‑M1/10‑36 (MQ=255)
                          cgaagttgtTGTACTGCACCCATTTTGTTGGACGAt           >  1:289791‑M1/10‑36 (MQ=255)
                          attatccggTGTACTGCACCCATTTTGTTGGACGAt           >  1:1515675‑M1/10‑36 (MQ=255)
                           gcagaaagTGTACTGCACCCATTTTGTTGGACGATg          >  1:3720376‑M1/9‑36 (MQ=255)
                           gaagttgtTGTACTGCACCCATTTTGTTGGACGATg          <  1:1937326‑M1/28‑1 (MQ=255)
                           gaagttgtTGTACTGCACCCATTTTGTTGGACGATg          <  1:734171‑M1/28‑1 (MQ=255)
                           cTTCAAGTTGTACTGCACCCATTTTGTTGGACGATg          <  1:2744144/36‑1 (MQ=255)
                            ttCAAGTTGTACTGCACCCATTTTGTTGGACGATGa         >  1:5192879/1‑36 (MQ=255)
                            cagaaagTGTACTGCACCCATTTTGTTGGACGATGa         <  1:3326452‑M1/29‑1 (MQ=255)
                            cagaaagTGTACTGCACCCATTTTGTTGGACGATGa         <  1:2286918‑M1/29‑1 (MQ=255)
                            cagaaagTGTACTGCACCCATTTTGTTGGACGATGa         >  1:4962357‑M1/8‑36 (MQ=255)
                            aagttgtTGTACTGCACCCATTTTGTTGGACGATGa         >  1:2531073‑M1/8‑36 (MQ=255)
                            aagttgtTGTACTGCACCCATTTTGTTGGACGATGa         >  1:4625495‑M1/8‑36 (MQ=255)
                              tccggTGTACTGCACCCATTTTGTTGGACGATGaaa       <  1:4613429‑M1/31‑1 (MQ=255)
                              gaaagTGTACTGCACCCATTTTGTTGGACGATGaaa       <  1:4291068‑M1/31‑1 (MQ=255)
                              gaaagTGTACTGCACCCATTTTGTTGGACGATGaaa       <  1:5659277‑M1/31‑1 (MQ=255)
                               ttgtTGTACTGCACCCATTTTGTTGGACGATGAAAt      >  1:4471506‑M1/5‑36 (MQ=255)
                               ttgtTGTACTGCACCCATTTTGTTGGACGATGAAAt      >  1:3997097‑M1/5‑36 (MQ=255)
                               ccggTGTACTGCCCCCATTTTGTTGGACGATGAAAt      >  1:4580688‑M1/5‑36 (MQ=255)
                               aaagTGTACTGCAACCATTTTGTTGGACGATGAAAt      <  1:2633218‑M1/32‑1 (MQ=255)
                               aaGTTGTACTGCACCCATTTTGTTGGACGATGAAAt      >  1:4935566/1‑36 (MQ=38)
                                cggTGTACTGCACCCATTTTGTTGGACGATGAAATg     <  1:4089607‑M1/33‑1 (MQ=255)
                                cggTGTACTGCACCCATTTTGTTGGACGATGAAATg     <  1:5030201‑M1/33‑1 (MQ=255)
                                 gtTGTACTGCACCCATTTTGTTGGACGATGAAATgg    <  1:2752458‑M1/34‑1 (MQ=255)
                                 gtTGTACTGCACCCATTTTGTTGGACGATGAAATgg    >  1:3956152‑M1/3‑36 (MQ=255)
                                  tTGTACTGCACCGATTTTGTTGGACGATGAAATGGa   <  1:4498989‑M1/35‑1 (MQ=255)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa   <  1:4065497‑M1/35‑1 (MQ=255)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa   >  1:4671371‑M1/2‑36 (MQ=255)
                                  gTGTACTGCACCCATTTTGTTGGACGATGAAATGGa   >  1:5302910‑M1/2‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:5518073‑M1/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:4432417‑M1/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  <  1:3393462‑M1/36‑1 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGAACGATGAAATGGaa  >  1:475796‑M1/1‑36 (MQ=255)
                                   |                                   
GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA  >  REL606/588460‑588530

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG