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breseq version 0.24 revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,660,997 | 0 | G→T | 15.7% | 8.8 ‑13.7 0.0 | 81 | 480 | tyrA | fused chorismate mutase T/prephenate dehydrogenase |
* | REL606 | 3,250,911 | 1 | .→C | 3.8% | 8.2 0.0 ‑0.6 | 80 | coding (338/2673 nt) | infB | translation initiation factor IF‑2 |
* | REL606 | 3,344,273 | 0 | A→G | 6.7% | 5.5 ‑2.9 ‑0.2 | 74 | 1350 | acrF | multidrug efflux system protein |
* | REL606 | 4,383,460 | 0 | G→T | 14.0% | 5.4 ‑10.3 0.0 | 79 | 619 | purA | adenylosuccinate synthetase |
* | REL606 | 3,248,957 | 0 | A→T | 94.1% | 5.3 ‑0.5 ‑0.1 | 68 | 2292 | infB | translation initiation factor IF‑2 |
* | REL606 | 3,842,651 | 0 | A→T | 9.1% | 5.1 ‑4.5 ‑0.0 | 75 | 32 | dnaN | DNA polymerase III subunit beta |
* | REL606 | 1,450,516 | 1 | .→C | 4.3% | 4.5 ‑0.7 ‑0.1 | 47 | coding (274/1293 nt) | ynbD | predicted phosphatase, inner membrane protein |
* | REL606 | 1,450,518 | 1 | .→A | 4.3% | 4.2 ‑0.7 ‑0.0 | 47 | coding (276/1293 nt) | ynbD | predicted phosphatase, inner membrane protein |
* | REL606 | 3,304,275 | 0 | C→A | 13.2% | 4.2 ‑9.5 0.0 | 86 | 400 | sspB | ClpXP protease specificity‑enhancing factor |
* | REL606 | 1,733,649 | 0 | A→C | 3.9% | 3.5 ‑0.5 ‑0.1 | 102 | 685 | pykF | pyruvate kinase |
* | REL606 | 3,893,550 | 1 | .→G | 2.9% | 3.4 0.0 ‑0.0 | 68 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
* | REL606 | 66,611 | 0 | G→T | 14.3% | 3.1 ‑20.6 0.0 | 80 | 1974 | polB | DNA polymerase II |
* | REL606 | 3,398,441 | 0 | A→G | 100.0% | 2.7 | 1 | 794 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,398,438 | 0 | A→G | 100.0% | 2.6 | 1 | 797 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,398,431 | 1 | .→G | 100.0% | 2.5 | 1 | coding (804/1185 nt) | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,398,435 | 0 | T→G | 100.0% | 2.3 | 1 | 800 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 3,584,604 | 0 | T→A | 7.0% | 2.1 ‑6.4 ‑0.0 | 70 | 431 | yhiF | predicted DNA‑binding ranscriptional regulator |
* | REL606 | 3,398,450 | 0 | A→C | 100.0% | 1.7 | 1 | 785 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 569,233 | 0 | A→G | 100.0% | 1.6 | 1 | 704 | yhhI | predicted transposase |
* | REL606 | 3,944,453 | 0 | C→T | 100.0% | 1.6 | 2 | noncoding (48/87 nt) | leuT | tRNA‑Leu |
* | REL606 | 2,241,587 | 0 | A→G | 7.5% | 1.4 ‑5.3 ‑0.0 | 67 | 813 | ccmH | heme lyase, CcmH subunit |
* | REL606 | 569,331 | 0 | T→A | 100.0% | 1.1 | 1 | 606 | yhhI | predicted transposase |
* | REL606 | 569,322 | 0 | G→T | 100.0% | 1.0 | 1 | 615 | yhhI | predicted transposase |
* | REL606 | 3,398,433 | 0 | C→T | 100.0% | 1.0 | 1 | 802 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 569,337 | 0 | C→A | 100.0% | 0.9 | 1 | 600 | yhhI | predicted transposase |
* | REL606 | 569,323 | 0 | G→T | 100.0% | 0.8 | 1 | 614 | yhhI | predicted transposase |
* | REL606 | 569,230 | 0 | C→A | 100.0% | 0.7 | 1 | 707 | yhhI | predicted transposase |
* | REL606 | 1,274,330 | 0 | G→T | 9.0% | 0.7 ‑5.3 ‑0.0 | 69 | 256 | ychP | predicted invasin |
* | REL606 | 1,032,399 | 1 | .→G | 3.4% | 0.6 ‑2.9 0.0 | 59 | coding (398/549 nt) | ymbA | hypothetical protein |
* | REL606 | 569,335 | 0 | C→A | 100.0% | 0.5 | 1 | 602 | yhhI | predicted transposase |
* | REL606 | 3,807,033 | 0 | T→. | 2.9% | 0.5 ‑1.6 ‑0.0 | 70 | coding (67/1392 nt) | uhpT | sugar phosphate antiporter |
* | REL606 | 569,334 | 0 | C→A | 100.0% | 0.3 | 1 | 603 | yhhI | predicted transposase |
* | REL606 | 3,293,877 | 0 | A→T | 8.7% | 0.3 ‑7.4 0.0 | 67 | 4011 | gltB | glutamate synthase, large subunit |
* | REL606 | 573,075 | 0 | C→A | 100.0% | 0.2 | 3 | 414 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 573,202 | 0 | T→G | 100.0% | 0.2 | 6 | 287 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 2,650,144 | 0 | A→C | 100.0% | 0.2 | 3 | noncoding (534/2906 nt) | rrlG | 23S ribosomal RNA |
* | REL606 | 3,398,611 | 0 | G→T | 100.0% | 0.2 | 4 | 624 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 4,590,360 | 0 | T→C | 6.8% | 0.2 ‑1.6 ‑0.0 | 79 | 392 | dnaT | primosomal protein I |
* | REL606 | 553,556 | 0 | C→A | 100.0% | 0.1 | 1 | 1716 | ECB_00512 | putative tail component of prophage |
* | REL606 | 553,561 | 0 | T→C | 100.0% | 0.1 | 1 | 1721 | ECB_00512 | putative tail component of prophage |
* | REL606 | 3,603,688 | 0 | G→C | 2.9% | 0.1 0.0 ‑0.5 | 68 | 835 | yhjD | conserved inner membrane protein |
* | REL606 | 3,928,513 | 0 | T→A | 6.0% | 0.1 ‑5.6 0.0 | 71 | 297 | rho | transcription termination factor Rho |