New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1299694 =34 (0.740)11 (0.240) 5/52 NT 29.3% coding (919/1632 nt) oppA oligopeptide transporter subunit
?REL606 = 2574502 19 (0.310)intergenic (+344/+474) sseA/sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate

AGTTTCAGTGCGGTACGCACACGCACATCGTTGAATGGCGGTTT..................................  <  REL606/1299737‑1299694
...................................TGGCGGTTTTTTGTTTTTTAAAGGAAAGTGAATTTACATGTTT  <  REL606/2574502‑2574469
                                                                              
         GCGGTACGCACACGCACATCGTTGAATGGCGGTTTT                                   >  1:764896/1‑36 (MQ=1)
         GCGGTACGCACACGCACATCGTTGAATGGCGGGTTT                                   >  1:6288633/1‑36 (MQ=0)
          CGGTACGCACACGCACATCGTTGAATGGCGGTTTTT                                  >  1:479846/1‑36 (MQ=1)
          CGGTACGCACACGCACATCGTTGAATGGCGGTTTTT                                  >  1:4807118/1‑36 (MQ=1)
              ACGCACACGCACATCGTTGAATGGCGGTTTTTTGTT                              >  1:3885427/1‑36 (MQ=1)
              ACGCACACGCACATCGTTGAATGGCGGTTTCTTGTT                              >  1:7575555/1‑36 (MQ=0)
                 CACACGCACATCGTTGAATGGCGGTTTTTTGTTTTT                           >  1:8372387/1‑36 (MQ=1)
                  ACACGCACATCGTTGAATGGCGGTTTTTTGTTTTTT                          >  1:6298793/1‑36 (MQ=1)
                  ACACGCACATCGTTGAATGGCGGTTTTTTGTTGTTT                          >  1:3058301/1‑36 (MQ=0)
                     CGCACATCGTTGAATGGCGGTTTTTTGTTTTTTttt                       >  1:3267140/1‑33 (MQ=0)
                      GCACATCGTTGAATGGCGGTTTTTTGTTTTTTAttt                      >  1:4593995/1‑33 (MQ=17)
                                                                              
AGTTTCAGTGCGGTACGCACACGCACATCGTTGAATGGCGGTTT..................................  <  REL606/1299737‑1299694
...................................TGGCGGTTTTTTGTTTTTTAAAGGAAAGTGAATTTACATGTTT  <  REL606/2574502‑2574469

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 17 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG