Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,316,032 | +G | 9.4% | coding (54/1968 nt) | yhcP ← | p‑hydroxybenzoic acid efflux system component |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,316,032 | 1 | .→G | 9.4% | 3.2 ‑2.1 0.0 | 32 | coding (54/1968 nt) | yhcP | p‑hydroxybenzoic acid efflux system component |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (9/20): total (12/20) | ||||||||||
Fisher's exact test strand distribution p-value = 1.18e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTGATTAGC > REL606/3315997‑3316067
|
tGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTc < 1:7282890/36‑1 (MQ=255)
tGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTc < 1:6078117/36‑1 (MQ=255)
gAAAGCCAACAAACAGCGCCAGTACAATGGCGGGC.g > 1:4859775/1‑36 (MQ=255)
aaaGCCAACAAACAGCGCCAGTACAATGGCGGGC.gg > 1:6549148/1‑35 (MQ=255)
aatccAACAAACAGCGCCAGTACAATGGCGGTC.Gcc < 1:2771699/33‑1 (MQ=255)
aaGCCAACAAACAGCGCCAGTACAATGGCGGGC.ggc > 1:3113358/1‑34 (MQ=37)
aaGCCAACAAACAGCGCCAGTACAATGGCGGGC.Gcc > 1:3116835/1‑36 (MQ=255)
aGCCAACAAACAGCGCCAGTACAATGGCGGTC.GCCa < 1:1813903/36‑1 (MQ=255)
aGCCAACAAACAGCGCCAGTACAATCGCGGTC.ggcc > 1:3297385/1‑33 (MQ=37)
gCCAACAAACAGCGCCAGTACAATGGCGGTC.GCCAg < 1:5761263/36‑1 (MQ=255)
ccAACAAACATCGCCAGTACAAAGGCGGTC.GCCAGt < 1:89120/36‑1 (MQ=37)
aacaaacaGCGCCAGTACAATGGCGGTG.GGCCGttt > 1:2352210/1‑36 (MQ=25)
aacaaacaGCGCCAGTACAATGGCGGTC.GCCAGttt < 1:7335281/36‑1 (MQ=255)
acaaacaGCGCCAGTACAATGGCGGTC.GCCAGtttt < 1:3467642/36‑1 (MQ=255)
caaacaGCGCCAGTACAATGGCGGGCGGCCGGtttt > 1:7964772/1‑36 (MQ=19)
aacaGCGCCAGTACAATGGCGGTG.GCCAGgtttttc > 1:6042671/1‑33 (MQ=25)
acaGCGCCAGTACAATGGCGGTCTGCCGGTTTTAcc > 1:1328495/1‑36 (MQ=25)
acaGCGCCAGTACAATGGCGGTCGGCCGGtttttcg > 1:6899042/1‑33 (MQ=19)
caGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGc < 1:4524348/36‑1 (MQ=255)
caGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGc < 1:2303635/36‑1 (MQ=255)
aGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGCa < 1:1299452/36‑1 (MQ=255)
aGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGCa < 1:5506276/36‑1 (MQ=255)
aGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGCa < 1:2984980/36‑1 (MQ=255)
aGCGCCAGTACAATGGCGGGC.GCCCGTTTTTTCGCa > 1:85819/1‑36 (MQ=16)
cgcCAGTACAATGGCGGTC.GCCAGTTTTACCGCaaa < 1:6698598/36‑1 (MQ=255)
gcCAGTACAATGGCGGTC.GCCAGTTTTACCGCAAAg < 1:7718821/36‑1 (MQ=255)
ccAGTACAATGGCGGTC.GCCAGTTTTACCGCAAAGc < 1:7261866/36‑1 (MQ=255)
aCAATGGCGGTC.GCCAGTTTTACCGCAAAGCGAata < 1:5847966/36‑1 (MQ=255)
aCAATGGCGGTC.GCCAGTTTTACCGCAAAGCGAata < 1:130402/36‑1 (MQ=255)
tGGCGGTC.GCCAGTTTTACCGCAAAGCGAATATGtt < 1:7831700/36‑1 (MQ=255)
ggCGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTg > 1:7941517/1‑36 (MQ=255)
cGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTGAt > 1:1036877/1‑36 (MQ=255)
cGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTGAt < 1:7667266/36‑1 (MQ=255)
cGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTGAt > 1:3868335/1‑36 (MQ=255)
ggTC.GCCAGTTTTACCGCAAAGCGAATATGTTGAtt > 1:7363031/1‑36 (MQ=255)
ggTC.GCCAGTTTTACCGCAAAGCGAATATGTTGAtt > 1:8260704/1‑36 (MQ=255)
gTC.GCCAGTTTTACCGCAAATAGAATATGTTGATTa < 1:808361/36‑1 (MQ=37)
tC.GCCAGTTTTACCGCAAAGCGAATATGTTGATTAg < 1:4630944/36‑1 (MQ=255)
c.GCCAGTTTTACCGCAAAGCGTATATGTTGATTAGc < 1:2905065/36‑1 (MQ=255)
|
TGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTC.GCCAGTTTTACCGCAAAGCGAATATGTTGATTAGC > REL606/3315997‑3316067
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|