Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546952–547700 555923–555877 8178–8972 24 [20] [1] 87 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =1 (0.020)59 (1.080) 34/62 NT 98.3% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959
                                   |                                   
atcatacactagatcagtaagttggcagcatcaccc                                     >  1:5899385‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatctccc                                     >  1:28615‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:3930267‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:4076931‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:2689747‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:4412924‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:2366857‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:7839281‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:7854392‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:7919987‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:8185773‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:7101237‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:5102647‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:185256‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:1086284‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:6460618‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaaggtggcagcatcaccc                                     <  1:7068737‑M1/1‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:4346446‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:4255697‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:385865‑M1/2‑1 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   <  1:4380691‑M1/3‑1 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   >  1:6609360‑M1/34‑36 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   >  1:630722‑M1/34‑36 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:5524795‑M1/4‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:3741553‑M1/4‑1 (MQ=255)
    tacactaaatcagtaagttggcagcatcaccCAAAc                                 <  1:2053384‑M1/5‑1 (MQ=255)
     acactaaatcagtaagttggcagcatgaccCAAAcg                                <  1:7071116‑M1/6‑1 (MQ=255)
     acactaaatcagtaagttggcagcatcaccCAAAcg                                <  1:925918‑M1/6‑1 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               <  1:322216‑M1/7‑1 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               <  1:4206068‑M1/7‑1 (MQ=255)
       actaaatcagtaagttggcagcatcaccCAAAcgcg                              <  1:2947633‑M1/8‑1 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            <  1:8212636‑M1/10‑1 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            <  1:1797031‑M1/10‑1 (MQ=255)
         taaatcagtaagttggcagcatcacaCAAACGCGCa                            <  1:6098238‑M1/10‑1 (MQ=255)
          aaatcagtaagttggcagcatcaccCAAACGCGCAt                           <  1:6125692‑M1/11‑1 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          <  1:5185725‑M1/12‑1 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          <  1:2600843‑M1/12‑1 (MQ=255)
            atcagtaagttggcagcatcaccCAAACGCGCATCa                         >  1:8204109‑M1/24‑36 (MQ=255)
            atcagtaagttggcagcatcaccCAAACGCGCATCa                         <  1:7245457‑M1/13‑1 (MQ=255)
              cagtaagttggcagcatcaccCAAACGCGCATCAgg                       >  1:5236137‑M1/22‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      >  1:7740360‑M1/21‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      >  1:1150883‑M1/21‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      >  1:6143101‑M1/21‑36 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     >  1:7138902‑M1/20‑36 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     <  1:6838838‑M1/17‑1 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     >  1:1305260‑M1/20‑36 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     <  1:5728958‑M1/17‑1 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    >  1:3738787‑M1/19‑36 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    >  1:5730491‑M1/19‑36 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    <  1:550628‑M1/18‑1 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    <  1:7714341‑M1/18‑1 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    >  1:1862891‑M1/19‑36 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  <  1:8413599‑M1/20‑1 (MQ=255)
                    gttggcagcatcaccCAAACGCGCATCAGGTGCAac                 <  1:5720617‑M1/21‑1 (MQ=255)
                    gttggcagcatcaccCAAACGCGCATCAGGTGCAac                 <  1:7264574‑M1/21‑1 (MQ=255)
                    gttggcagcatcaccCAAACGCGCATCAGGTGCAac                 <  1:4652621‑M1/21‑1 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGCAaca                <  1:6695932‑M1/22‑1 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGCAaca                >  1:3673814‑M1/15‑36 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGAAaca                <  1:885786‑M1/22‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               <  1:5399559‑M1/23‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               >  1:4757901‑M1/14‑36 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              >  1:7213344‑M1/13‑36 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:1016159‑M1/24‑1 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:2457432‑M1/24‑1 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:4620746‑M1/24‑1 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:5038146‑M1/24‑1 (MQ=255)
                        gttgttCGCTTCAACCGCGCATCAGTGTCAacatcc             >  1:236422/1‑34 (MQ=0)
                        gcagcatcaccCAAACGCGCATCAGGTGCAacatac             >  1:8434819‑M1/12‑36 (MQ=255)
                          agcatcaccCAAACGCGCATCAGGTGCAacatacat           <  1:2174424‑M1/27‑1 (MQ=255)
                          agcatcaccCAAACGCGCATCAGGTGCAacatacat           <  1:6463915‑M1/27‑1 (MQ=255)
                          agcatcaccCAAACGCGCATCAGGTGCAacatacat           <  1:6894830‑M1/27‑1 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          <  1:5970938‑M1/28‑1 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          >  1:4238016‑M1/9‑36 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          >  1:495220‑M1/9‑36 (MQ=255)
                            catcaccCAAACGCGCATCAGGTGCAACATACATta         <  1:6197517‑M1/29‑1 (MQ=255)
                             atcaccCAAACGCGCATCAGGTGCAACATACATtaa        <  1:7735116‑M1/30‑1 (MQ=255)
                             atcaccCAAACGCGCATCAGGTGCAACATACATtaa        >  1:2106613‑M1/7‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      <  1:1543643‑M1/32‑1 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:2646675‑M1/4‑36 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:5905836‑M1/4‑36 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:2050442‑M1/4‑36 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     >  1:1124218‑M1/4‑36 (MQ=255)
                                 ccCAAACGCGCATCAGGTGCAACATACATTAATaaa    <  1:5744156‑M1/34‑1 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTACTAAAt   >  1:1763430‑M1/2‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   >  1:4345663‑M1/2‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:2020794‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:5117178‑M1/1‑36 (MQ=255)
                                   |                                   
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG