New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 381468662 (1.130)6 (0.110) 5/64 NT 7.8% coding (834/1185 nt) emrD multidrug efflux system protein
?REL606 = 4414859 79 (1.310)intergenic (+305/‑4) fklB/cycA FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/D‑alanine/D‑serine/glycine transporter

GAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGA  >  REL606/4414824‑4414894
                                   |                                   
gagCCTGAACAACACAGACAGGTACAGGAAGaaaaa                                     <  1:2963055/36‑1 (MQ=255)
gagCCTGAACAACACAGACAGGTACAGGAAGaaaaa                                     >  1:2242041/1‑36 (MQ=255)
 cgcCTGAACAACACAGACAGGTACAGGAAGAAAAAa                                    >  1:934563‑M2/2‑35 (MQ=255)
 aGCCTGAACAACACAGACAGGTACAGGAAGAAAAAa                                    >  1:4827676‑M2/1‑35 (MQ=255)
 aGCCTGAACAACACAGACAGGTACAGGAAGAAAAAa                                    >  1:1008726‑M2/1‑35 (MQ=255)
 aGCCTGAAAAACACAGACAGGTACAGGAAGAAAAAa                                    <  1:165718‑M2/36‑2 (MQ=255)
  gCCTGAACAACACAGACAGGTACAGGAAGAAAAAaa                                   >  1:3276654‑M2/1‑34 (MQ=255)
  gCCTGAACAACACAGACAGGTACAGGAAGAAAAAaa                                   <  1:3491264‑M2/36‑3 (MQ=255)
  gCCTGAACAACACAGACAGGTACAGGAAGAAAAAaa                                   <  1:3974206‑M2/36‑3 (MQ=255)
    cTGAACAACACAGACAGGTACAGGAAGAAAAAAACa                                 >  1:5752494/1‑36 (MQ=255)
    cTGAACAACACAGACAGGTACAGGAAGAAAAAAACa                                 >  1:5263017/1‑36 (MQ=255)
    cTGAACAACACAGACAGGTACAGGAAGAAAAAAACa                                 >  1:5186666/1‑36 (MQ=255)
     tGAACAACACAGACAGGTACAGGAAGAAAAAaactt                                <  1:1955216‑M2/36‑6 (MQ=255)
     tGAACAACACAGACAGGTACAGGAAGAAAAAAACAt                                <  1:4291236/36‑1 (MQ=255)
     tGAACAACACAGACAGGTACAGGAAGAAAAAAACAt                                >  1:5500495/1‑36 (MQ=255)
      gAACAACACAGACAGGTACAGGAAGAAAAAAACATg                               >  1:3980998/1‑36 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              >  1:5867528/1‑36 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              <  1:5920969/36‑1 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              <  1:3284194/36‑1 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              >  1:2769993/1‑36 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              >  1:3108660/1‑36 (MQ=255)
       aacaacACAGACAGGTACAGGAAGAAAAAAACATgg                              <  1:2834998/36‑1 (MQ=255)
         caacaCAGACAGGTACAGGAAGAAAAAAACATGGTa                            >  1:480975/1‑36 (MQ=255)
         caacaCAGACAGGTACAGGAAGAAAAAAACATGGTa                            <  1:4082652/36‑1 (MQ=255)
         caacaCAGACAGGTACAGGAAGAAAAAAACATGGTa                            >  1:6759003/1‑36 (MQ=255)
         caacaCAGACAGGTACAGGAAGAAAAAAACATGGTa                            >  1:1320192/1‑36 (MQ=255)
          aacaCAGACAGGTACAGGAAGAAAAAAACATGGTAg                           >  1:1670467/1‑36 (MQ=255)
          aacaCAGACAGGTACAGGAAGAAAAAAACATGGTAg                           <  1:494888/36‑1 (MQ=255)
          aacaCAGACAGGTACAGGAAGAAAAAAACATGGTAg                           >  1:154157/1‑36 (MQ=255)
           acacAGACAGGTACAGGAAGAAAAAAACATGGTAGa                          >  1:7873211/1‑36 (MQ=255)
           acacAGACAGGTACAGGAAGAAAAAAACATGGTAGa                          >  1:5610366/1‑36 (MQ=255)
           acacAGACAGGTACAGGAAGAAAAAAACATGGTAGa                          >  1:882739/1‑36 (MQ=255)
           acacAGACAGGTACAGGAAGAAAAAAACATGGTAGa                          <  1:7376980/36‑1 (MQ=255)
            cacaGACAGGTACAGGAAGAAAAAAACATGGTAGAt                         <  1:1594436/36‑1 (MQ=255)
             agagacagGTACAGGAAGAAAAAAACATGGTAGATc                        <  1:3254595/34‑1 (MQ=255)
             acagacagGTACAGGAAGAAAAAAACATGGTAGATc                        <  1:4464645/36‑1 (MQ=255)
             acagacagGTACAGGAAGAAAAAAACATGGTAGATc                        <  1:1603904/36‑1 (MQ=255)
             acagaaagGCACAGGAAGAAAAAAACATGGAAGATc                        >  1:4732203/1‑36 (MQ=25)
              cagacagGTACAGGAAGAAAAAAACATGGTAGATCa                       >  1:7322818/1‑36 (MQ=255)
              cagacagGTACAGGAAGAAAAAAACATGGTAGATCa                       >  1:4615796/1‑36 (MQ=255)
              cagacagGTACAGGAAGAAAAAAACATGGTAGATCa                       <  1:7140058/36‑1 (MQ=255)
              cagacagGTACAGGAAGAAAAAAACATGGTAGATCa                       >  1:1563339/1‑36 (MQ=255)
               agacagGTACAGGAAGAAAAAAACATGGTAGATCAg                      <  1:6836149/36‑1 (MQ=255)
               agacagGTACAGGAAGAAAAAAACATGGTAGATCAg                      <  1:6845995/36‑1 (MQ=255)
               agacagGTACAGGAAGAAAAAAACATGGTAGATCAg                      >  1:5287386/1‑36 (MQ=255)
                gacagGTACAGGAAGAAAAAAACATGGTAGATCAgg                     >  1:4470392/1‑36 (MQ=255)
                 acagGTACAGGAAGAAAAAAACATGGTAGATCAGGt                    >  1:7332386/1‑36 (MQ=255)
                 acagGTACAGGAAGAAAAAAACATGGTAGATCAGGt                    >  1:3313933/1‑36 (MQ=255)
                  cagGTACAGGAAGAAAAAAACATGGTAGATCAGGTa                   <  1:3065137/36‑1 (MQ=255)
                   agGTACAGGAAGAAAAAAACATGGTAGATCAGGTaa                  >  1:1519748/1‑36 (MQ=255)
                   agGTACAGGAAGAAAAAAACATGGTAGATCAGGTaa                  >  1:1990484/1‑36 (MQ=255)
                   agGTACAGGAAGAAAAAAACATGGTAGATCAGGTaa                  >  1:5450465/1‑36 (MQ=255)
                   agGTACAGGAAGAAAAAAACATGGTAGATCAGGTaa                  <  1:2809010/36‑1 (MQ=255)
                    ggTACAGGAAGAAAAAAACATGGTAGATCAGGTaaa                 <  1:6734568/36‑1 (MQ=255)
                    ggTACAGGAAGAAAAAAACATGGTAGATCAGGTaaa                 >  1:4727418/1‑36 (MQ=255)
                     gTACAGGAAGAAAAAAACATGGTAGATCAGGTaaaa                >  1:1075119/1‑36 (MQ=255)
                     gTACAGGAAGAAAAAAACATGGTAGATCAGGTaaaa                <  1:7529406/36‑1 (MQ=255)
                     gTACAGGAAGAAAAAAACATGGTAGATCAGGTaaaa                <  1:7839535/36‑1 (MQ=255)
                       aCAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGt              <  1:5375433/36‑1 (MQ=255)
                        cAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTc             >  1:4093412/1‑36 (MQ=255)
                        cAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTc             <  1:5971899/36‑1 (MQ=255)
                        aaGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTc             <  1:598009/35‑1 (MQ=255)
                        aaGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTc             <  1:2872965/35‑1 (MQ=255)
                         aGGAAGAAAAAaaccgactgccacattaacgtggag            >  1:5000345‑M2/1‑11 (MQ=255)
                         aGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCg            <  1:4838458/36‑1 (MQ=255)
                         aGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCg            <  1:3834129/36‑1 (MQ=255)
                         aGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCg            >  1:7408481/1‑36 (MQ=255)
                          ggAAGAAAAAaaccgactgccacattaacgtggaga           >  1:5263847‑M2/1‑10 (MQ=255)
                          ggAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGt           >  1:1530473/1‑36 (MQ=255)
                           gaagaaAAAAACATGGTAGATCAGGTAAAATTCGtt          <  1:3229925/36‑1 (MQ=255)
                           gaagaaAAAAACATGGTAGATCAGGTAAAAGTCGtt          >  1:519930/1‑36 (MQ=255)
                           gaagaaAAAAACATGGTAGATCAGGTAAAAGTCGtt          >  1:538281/1‑36 (MQ=255)
                            aagaaAAAAACATGGGAGATCAGGTAAAAGTCGTTg         >  1:2293627/1‑36 (MQ=255)
                             agaaGAAaaccgactgccacattaacgtggagaagc        >  1:4061390‑M2/1‑7 (MQ=255)
                             agaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGc        <  1:2474636/36‑1 (MQ=255)
                              gaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGcc       >  1:1780226/1‑36 (MQ=255)
                              gaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGcc       <  1:6886166/36‑1 (MQ=255)
                               aaaaaaaccgactgccacattaacgtggagaagcgt      >  1:4693414‑M2/1‑5 (MQ=255)
                               aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCg      <  1:1395379/36‑1 (MQ=255)
                               aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCg      <  1:1731234/36‑1 (MQ=255)
                               aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCg      >  1:6696245/1‑36 (MQ=255)
                               aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCg      <  1:6249787/36‑1 (MQ=255)
                                aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCga     <  1:5584373/36‑1 (MQ=255)
                                aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCga     >  1:581099/1‑36 (MQ=255)
                                aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCga     >  1:251559/1‑36 (MQ=255)
                                 aaaaaccgactgccacattaacgtggagaagcgttt    >  1:5814247‑M2/1‑3 (MQ=255)
                                 aaaaaccgactgccacattaacgtggagaagcgttt    >  1:7565209‑M2/1‑3 (MQ=255)
                                 aaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCgat    <  1:5444872/36‑1 (MQ=255)
                                 aaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCgat    <  1:1120395/36‑1 (MQ=255)
                                 aaaaaCATAGTAGATCAGGTAAAAGTCGTTGCCgat    <  1:6300431/36‑1 (MQ=255)
                                  aaaaCATGGTAGATCAGGTAAAAGTCGTTGCCgatg   >  1:6029690/1‑36 (MQ=255)
                                  aaaaCATGGTAGATCAGGTAAAAGTCGTTGCCgatg   >  1:2691035/1‑36 (MQ=255)
                                  aaaaCATGGTAGATCAGGTAAAAGTCGTTGCCgatg   >  1:5866043/1‑36 (MQ=255)
                                   aaaCATGGTAGATCAGGTAAAAGTCGTTGCCgatga  >  1:360623/1‑36 (MQ=255)
                                   aaaCATGGTAGATCAGGTAAAAGTCGTTGCCgatga  <  1:7685293/36‑1 (MQ=255)
                                   |                                   
GAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGA  >  REL606/4414824‑4414894

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG