Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | 61.1% | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 15386 = | NA (NA) | 16 (0.290) | 14/64 | NT | 50.0% | noncoding (1/1343 nt) | IS186 | repeat region |
? | REL606 | = 4524527 | 16 (0.260) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
* | ? | REL606 | = 16728 | NA (NA) | 28 (0.500) | 20/64 | NT | 70.0% | noncoding (1343/1343 nt) | IS186 | repeat region |
? | REL606 | 4524522 = | 12 (0.200) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) |
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG................................... < REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC < REL606/4524527‑4524493
CGTAATACCACATCCCTTAAGTTAGCGCTTATGGGT < 1:3574979/36‑1 (MQ=0)
CGTAATACCACAACCCTTAAGTTAGCGCTTATGGGT < 1:1040859/36‑1 (MQ=1)
GTAATACCACAACCCTTAAGTTAGCGCTTATGGGTT < 1:7551936/36‑1 (MQ=1)
TAATACCACAACCCTTAAGTTAGCGCTTATGGGTTG > 1:2905070/1‑36 (MQ=1)
AATACCACAACCCTTAAGTTAGCGCTTATGGGTTGC < 1:5168277/36‑1 (MQ=1)
ACAACCCTTAAGTTAGCGCTTATGGGTTGCGGCCCC < 1:5018394/36‑1 (MQ=1)
CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT < 1:5732424/36‑1 (MQ=1)
CCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTTG > 1:650778/1‑36 (MQ=1)
AAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAA > 1:233194/1‑36 (MQ=1)
AAGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAA > 1:7105572/1‑36 (MQ=1)
AGTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAA > 1:3026884/1‑36 (MQ=1)
GTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAAT < 1:1277342/36‑1 (MQ=1)
GTTAGCGCTTATGGGTTGCGGCCCCGGTTGCAAAAT > 1:5267936/1‑36 (MQ=1)
GCGCTTATGGGTTGCGGCCCCGGTTGCAAAATAACG > 1:1004166/1‑36 (MQ=1)
CTTATGGGTTGCGGCCCCGGTTGCAAAATAACGCGC < 1:4529168/36‑1 (MQ=1)
ATGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTG < 1:2359398/36‑1 (MQ=1)
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG................................... < REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC < REL606/4524527‑4524493
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 25 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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