Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,135,984 | A→G | 31.4% | S26P (TCC→CCC) | dinI ← | DNA damage‑inducible protein I |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,135,984 | 0 | A→G | 31.4% | 3.1 ‑1.9 0.0 | 18 | 76 | dinI | DNA damage‑inducible protein I |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (5/7): total (10/8) | ||||||||||
Fisher's exact test strand distribution p-value = 1.52e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGC > REL606/1135949‑1136017
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ttCATTATCAGGAAACGCATACTGAATACGGCGGGa > 1:4318198/1‑36 (MQ=255)
ttCATTATCAGGAAACGCATACTGAATACGGCGGGa < 1:4189701/36‑1 (MQ=255)
ttCATTAACAGGAAACGCATACTGAATACGGCGGGa < 1:4017648/36‑1 (MQ=255)
aTTATCAGGAAACGCATACTGAATACGGCGGGgaaa > 1:2756948/1‑35 (MQ=255)
tATCAGGAAACGCATGCTGAATACGGCGGGGAAGtt < 1:1332604/36‑1 (MQ=37)
aTCAGGAAACGCATACTGAATACGGCGGGGAAggcg > 1:1156278/1‑33 (MQ=37)
aTCAGGAAACGCATACTGAATACGGAGGGGAAggtt > 1:4014784/1‑33 (MQ=25)
tCAGGAAACGCATACTGAATACGGCGGGAAAGTTCg < 1:2281957/36‑1 (MQ=255)
ggAAACGCATACTGAATACGGCGGGAAAGTTCgcca < 1:2155271/36‑1 (MQ=255)
gAAACGCATACTGAATACGGCGGGGAAGTTTgcccg > 1:5176359/1‑34 (MQ=37)
gAAACGCATACTGAATACGGCGGGGAAGTTCgcccg > 1:124421/1‑34 (MQ=38)
aaaCGCATACTGAATACGGCGGGGAAGTTCtccccg > 1:3930479/1‑33 (MQ=37)
aCGCATACTGAATACGGCGGTAAAGTTCtccagcca < 1:3203205/36‑1 (MQ=37)
cTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTc < 1:972768/36‑1 (MQ=255)
cTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTc < 1:5325399/36‑1 (MQ=255)
gAATACGGCGGAAAAGTTCGCCAGCCAGGGCGTCaa < 1:2092367/36‑1 (MQ=255)
aTACGGCGGGAAAGTTCGCCAGCCCGGGCGGCAATa > 1:2731479/1‑36 (MQ=37)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:5427779/1‑36 (MQ=255)
gcggGAAAGTTCGCCAGCCAGGGCGTCAATAGcccc > 1:2719231/1‑36 (MQ=255)
cggAAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCa < 1:3076804/36‑1 (MQ=255)
gggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAg > 1:5667860/1‑36 (MQ=255)
ggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCCGc > 1:1011319/1‑36 (MQ=255)
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TTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGC > REL606/1135949‑1136017
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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