Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,248,380 | A→C | 87.0% | D295E (GAT→GAG) | dhaM ← | fused predicted dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,248,380 | 0 | A→C | 87.0% | 9.0 ‑0.4 ‑0.3 | 53 | 885 | dhaM | fused predicted dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
Reads supporting (aligned to +/- strand): new base (26/20): ref base (5/2): total (31/22) | ||||||||||
Fisher's exact test strand distribution p-value = 6.86e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.08e-01 |
CGCTGGCTTCTGCTTTCGCTGTTAACGTCATCAGATCTAATAACGTGAAGTCAATAGCCTGGCGTAATC > REL606/1248346‑1248414
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cGCTGGCTTCTGCTTTCGCTGTTAACGTCATCAGAt > 1:5909163/1‑36 (MQ=255)
gCTGGCTTCTGCTTTCGCTGTTAACGTCATCAGCTc > 1:8101979/1‑36 (MQ=255)
cTGGCTTCTGCTTTCGCTGTTAACGTCATCAGCTCt < 1:3896446/36‑1 (MQ=255)
ggCTTCTGCTTTCGCTGTTAACGTCATCAGCTCtaa < 1:2672892/36‑1 (MQ=255)
ggCTTCTGCTTTCGCTGTTAACGTCATCAGATCtaa > 1:8010840/1‑36 (MQ=255)
cTTCTGCTTTCGCTGTTAACGTCATCAGCTCtaata > 1:7865718/1‑36 (MQ=255)
ttCTGCTTTCGCTGTTAACGTCATCAGCTCtaataa > 1:6338502/1‑36 (MQ=255)
ttCTGCTTTCGCTGTTAACGTCATCAGCTCtaataa < 1:2153469/36‑1 (MQ=255)
tCTGCTTTCGCTGTTAACGTCATCAGCTCTAATAAc < 1:5974633/36‑1 (MQ=255)
tCTGCTTTCGCTGTTAACGTCATCAGCTCTAATAAc < 1:5773722/36‑1 (MQ=255)
tCTGCTTTCGCTGTTAACGTCATCAGATCTAATAAc < 1:1004442/36‑1 (MQ=255)
cTGCTTTCGCTGTTAACGTCATCAGCTCTAATAACg < 1:2244480/36‑1 (MQ=255)
cTGCTTTCGCTGTTAACGTCATCAGCTCTAATAACg > 1:7205757/1‑36 (MQ=255)
tGCTTTCGCTGTTAACGTCATCAGCTCTAATAACGt < 1:6395997/36‑1 (MQ=255)
tGCTTTCGCTGTTAACGTCATCAGCTCTAATAACGt < 1:1329848/36‑1 (MQ=255)
gCTTTCGCTGTTAACGTCCTCAGCTCTAATAACGTg > 1:4858712/1‑36 (MQ=37)
gCTTTCGCTGTTAACGTCATCAGCTCTAATAACGTg < 1:1469519/36‑1 (MQ=255)
gCTTTCGCTGTTAACGTCATCAGCTCTAATAACGTg > 1:3645526/1‑36 (MQ=255)
cTTTCGCTGTTAACGTCATCAGCTCTAATAACGTGa < 1:2660428/36‑1 (MQ=255)
tttCGCTGTTAACGTCATCAGCTCTAATAACGTGaa > 1:6873888/1‑36 (MQ=255)
tttCGCTGTTAACGTCATCAGCTCTAATAACGTGaa < 1:5551966/36‑1 (MQ=255)
ttCGCTGTTAACGTCATCAGCTCTAATAACGTGAAg > 1:46095/1‑36 (MQ=255)
tCGCTGTTAACGTCATCAGCTCTAATAACGTGAAGt > 1:1198397/1‑36 (MQ=255)
cGCTGTTAACGTCATCAGCTCTAATAACGTGAAGTc > 1:3005469/1‑36 (MQ=255)
cGCTGTTAACGTCATCAGCCCTAATAACGTGAAGTc > 1:5674847/1‑36 (MQ=37)
gCTGTTAACGTCATCAGCTCTAATAACGTTAAGTCa > 1:2549971/1‑36 (MQ=37)
gCTGTTAACGTCATCAGCTCTAATAACGTGAAGTCa > 1:5602141/1‑36 (MQ=255)
gCTGTTAACGTCATCAGCTCTAATAACGTGAAGTCa > 1:7264511/1‑36 (MQ=255)
gCTGTTAACGTCATCAGCTCTAATAACGTGAAGTCa > 1:447254/1‑36 (MQ=255)
gCTGTTAACGTCATCAGCTCTAATAACGTGAAGTCa < 1:8030299/36‑1 (MQ=255)
tGTTAACGTCATCAGCTCTAATAACGTGAAGTCAAt < 1:659771/36‑1 (MQ=255)
tGTTAACGTCATCAGCTCTAATAACGTGAAGTCAAt > 1:6867890/1‑36 (MQ=255)
gTTAACGTCATCAGCTCTAATAACGTGAAGTCAATa < 1:4864430/36‑1 (MQ=255)
gTTAACGTCATCAGCTCTAATAACGTGAAGTCAATa < 1:3405607/36‑1 (MQ=255)
gTTAACGTCATCAGATCTAATAACGTGAAGTCAATa < 1:3143545/36‑1 (MQ=255)
ttAACGTCATCAGATCTAATTATGTGAAGTCAATAg > 1:722057/1‑36 (MQ=38)
tAACGTCATCAGCTCTAATAACGTGAAGTCAATAGc > 1:4170041/1‑36 (MQ=255)
tAACGTCATCAGCTCTAATAACGTGAAGTCAATAGc > 1:6268168/1‑36 (MQ=255)
aaCGTCATCAGCTCTAATAACGTGAAGTCAATAGcc > 1:930115/1‑36 (MQ=255)
aaCGTCATCAGCTCTAATAACGTGAAGTCAATAGcc < 1:861375/36‑1 (MQ=255)
aaCGTCATCAGCTCTAATAACGTGAAGTCAATAGcc > 1:4327329/1‑36 (MQ=255)
aaCGTCATCAGCTCTAATAACGTGAAGTCAATAGcc > 1:3550086/1‑36 (MQ=255)
cGTCATCAGCTCTAATAACGTGAAGTCAATAGCCTg > 1:4211057/1‑36 (MQ=255)
cGTCATCAGCTCTAATAACGTGAAGTCAATAGCCTg > 1:3190524/1‑36 (MQ=255)
gTCATCAGCTCTAATAACGTGAAGTCAATAGCCTgg < 1:6610612/36‑1 (MQ=255)
tcatcaGCTCTAATAACGTGAAGTCAATAGCCTGGc < 1:5131620/36‑1 (MQ=255)
catcaGCTCTAATAACGTGAAGTCAATAGCCTGGCg > 1:725315/1‑36 (MQ=255)
catcaGCTCTAATAACGTGAAGTCAATAGCCTGGCg > 1:2582161/1‑36 (MQ=255)
catcaGCTCTAATAACGTGAAGTCAATAGCCTGGCg < 1:2248354/36‑1 (MQ=255)
catcaGATCTAATAACGTGAAGTCAATAGCCTGGCg > 1:5165334/1‑36 (MQ=255)
caGCTCTAATAACGTGAAGTCAATAGCCTGGCGTaa < 1:7112003/36‑1 (MQ=255)
caGCTCTAATAACGTGAAGTCAATAGCCTGGCGTaa > 1:5924067/1‑36 (MQ=255)
gATCTAATAACGTGAAGTCAATAGCCTGGCGTAATc > 1:7588945/1‑36 (MQ=255)
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CGCTGGCTTCTGCTTTCGCTGTTAACGTCATCAGATCTAATAACGTGAAGTCAATAGCCTGGCGTAATC > REL606/1248346‑1248414
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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