Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,594,079 | G→T | 15.3% | L356L (CTC→CTA) | dcp ← | dipeptidyl carboxypeptidase II |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,594,079 | 0 | G→T | 15.3% | 2.3 ‑4.1 ‑0.0 | 25 | 1068 | dcp | dipeptidyl carboxypeptidase II |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (6/15): total (10/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.66e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.41e-01 |
AACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCC > REL606/1594050‑1594113
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aaCACCGTGTTTAATTCAAAATATGGCTGGAGCttg > 1:932512/1‑34 (MQ=25)
ccGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCt < 1:2292036/36‑1 (MQ=255)
cGTGTATAATTCAAAATATGGCTTGAGCTGCGCCtc < 1:5009500/36‑1 (MQ=255)
gtgtTTAATTCAAAATATGGCTTGAGCTGCGCCtca < 1:5821215/36‑1 (MQ=255)
tttAATTCAAAATATGGCTTTAGCTTCTCCtcatca > 1:364143/1‑36 (MQ=25)
tttAATTCAAAATATGGCTTTAGCTTCGCCtcatcc > 1:4438857/1‑35 (MQ=37)
tttAATTCAAAATATGGCTTGAGCTGCGCCtcatca < 1:632118/36‑1 (MQ=255)
ttAATTCAAAATATGGCTTGAGCTGCGCCTCATCaa < 1:614941/36‑1 (MQ=255)
aTTCAAAATATGGCTTTTGCTGCGCCTCTTCAAGag > 1:5799384/1‑35 (MQ=21)
aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGAt < 1:3314462/36‑1 (MQ=255)
aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGAt < 1:3366699/36‑1 (MQ=255)
aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGAt < 1:4545565/36‑1 (MQ=255)
ttCAAAATATGGCTTTATCTGCGCCTCCTCAAGATc > 1:2534345/1‑36 (MQ=25)
ttCAAAATATGGCTTGAGCTGCGCCTCATCAAGATc < 1:4343368/36‑1 (MQ=255)
ttCAAAATATGGCTTGAGCTGCGCCTCATCAAGATc < 1:852363/36‑1 (MQ=255)
cAAAATATGGCTTGAGCTGCGCCTCATCAAGATCaa < 1:4668633/36‑1 (MQ=255)
atatGGCTTGAGCTGCGCCTCATCAAGATCAAAttt < 1:3116137/36‑1 (MQ=255)
atatGGCTTGAGCTGCGCCTCATCAAGATCAAAttt < 1:3915158/36‑1 (MQ=255)
atatGGCTTGAGCTGAGCCTCATCAAGATCAAAttt < 1:5496953/36‑1 (MQ=255)
tatGGCTTGAGCTGGGGCTCAGTAAGATCAAAATtc > 1:5455115/1‑36 (MQ=16)
ggCTTGAGCTGCGCCTCATCAAGATCAAATTtctac > 1:5851983/1‑34 (MQ=255)
gCTTGAGCTGCGCCTCATCAAGATCAAATTTCTccc > 1:108346/1‑36 (MQ=255)
cTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccg > 1:1784403/1‑36 (MQ=255)
ttGAGCTGCGCCTCATCAAGCTCAAATTTCTCccgc < 1:438200/36‑1 (MQ=255)
tGAGCTGCGCCTCATCAAGATCAAATTTCTCccgcc > 1:1006115/1‑36 (MQ=255)
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AACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCC > REL606/1594050‑1594113
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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