New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2753982 =41 (0.800)4 (0.080) 4/60 NT 9.3% coding (2030/2562 nt) mutS DNA mismatch repair protein
?REL606 = 4141016 37 (0.620)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

ACCAGACTGTACTCGGTGGCGTTATGTAAAATATTGGCGG............  <  REL606/2754021‑2753982
...................................GGCGGGTTTTTTCTTTT  <  REL606/4141016‑4141005
                                                    
      CTGTACTCGGTGGCGTTATGTAAAATATTGGCGGGT            >  1:7163836/1‑36 (MQ=1)
       TGTACTCGGTGGCGTTATGTAAAATATTGGCGGGTT           >  1:5249996/1‑36 (MQ=1)
               GTGGCGTTATGTAAAATATTGGCGGGTTTTTTTTTT   >  1:5391464/1‑36 (MQ=0)
                TGGCGTTATGTAAAATATTGGCGGGTTTTTTTTTTT  >  1:4587770/1‑36 (MQ=0)
                                                    
ACCAGACTGTACTCGGTGGCGTTATGTAAAATATTGGCGG............  <  REL606/2754021‑2753982
...................................GGCGGGTTTTTTCTTTT  <  REL606/4141016‑4141005

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 10 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG