Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,370,728 G→T 17.0% W151L (TGG→TTG)  ycjN → predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,370,7280G→T17.0% 2.5 ‑4.8 ‑0.044452ycjNpredicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily
Reads supporting (aligned to +/- strand):  new base (6/2):  ref base (8/28):  total (14/30)
Fisher's exact test strand distribution p-value = 7.97e-03
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.60e-01

CGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTG  >  REL606/1370693‑1370763
                                   |                                   
cGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTg                                     <  1:1724601/36‑1 (MQ=255)
cGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTg                                     <  1:3000347/36‑1 (MQ=255)
   tgtTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTa                                  <  1:722029/36‑1 (MQ=255)
     ttCCTGTCAGCGCCTGGATTGGCGGTTTTTTGTAtt                                >  1:567519/1‑35 (MQ=21)
     ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc                                <  1:7937113/36‑1 (MQ=255)
     ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc                                <  1:1440249/36‑1 (MQ=255)
     ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc                                <  1:6065415/36‑1 (MQ=255)
     ttCCTATCCGCGCCTGGATTTGCGGTATCTTGTATc                                <  1:1109462/36‑1 (MQ=19)
      tCCTGTCAGCGCCTGGATTGGCGGTATTTGGTAttt                               >  1:1453252/1‑34 (MQ=38)
      tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg                               <  1:6604662/36‑1 (MQ=255)
      tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg                               <  1:3762920/36‑1 (MQ=255)
      tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg                               <  1:2415258/36‑1 (MQ=255)
       ccTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGc                              <  1:3589005/36‑1 (MQ=255)
        cTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCa                             <  1:4298659/36‑1 (MQ=255)
         tGTCAGCGCCTGGATTGGCGGTTTTTTGTATTGCaa                            >  1:4721549/1‑36 (MQ=16)
          gTCAGCGCCTGGATTGGCGGTATCTGGTATCGCaaa                           >  1:6231101/1‑36 (MQ=255)
          gTCAGCGCCTGGATTGGCGGTATCTGGTATCGCaaa                           <  1:1698551/36‑1 (MQ=255)
            cAGCGCCTGGATTGGCGGTATTTGGTATCGCAAAGa                         >  1:2849650/1‑36 (MQ=255)
             aGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGAt                        <  1:6041211/36‑1 (MQ=255)
             aGCGCCTGGATTGGCGGGATTTTGTATTGCAAAAAt                        >  1:4834487/1‑36 (MQ=16)
               cgcCTGGATTGGCGGTATCTGGTATCGCAAAGAtgt                      <  1:163761/36‑1 (MQ=255)
                 ccTGGATTGGCGGTATCTGGTATCGCAAAGATGTGc                    <  1:1451868/36‑1 (MQ=255)
                 ccTGGATTGGCGGTATCTGGTATCGCAAAGATGTGc                    <  1:6918983/36‑1 (MQ=255)
                  cTGGATTGGCGGTATCTTGTTTCTCCAAGATGTGCt                   >  1:6799639/1‑36 (MQ=16)
                  cTGGATTGGCGGTATCTTGTATCTCAAATGtgtgtt                   >  1:5405840/1‑34 (MQ=16)
                  cTGGATTGGCGGTATCTTGTATCGCAAAGATGTGCt                   <  1:6901402/36‑1 (MQ=255)
                  cTGGATTGGCGGGATTTTGTTTTGCAAAGAtgtggt                   >  1:4993292/1‑34 (MQ=9)
                    ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg                 <  1:973822/36‑1 (MQ=255)
                    ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg                 <  1:4459992/36‑1 (MQ=255)
                    ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg                 <  1:2074181/36‑1 (MQ=255)
                     gcttGGCGGTATCTGGTATCGCAAAGATGTGCTGGc                <  1:3933982/34‑1 (MQ=255)
                      aTTGGCGGTATCTGGTATCGCAAAGGTGTGCTGGCa               <  1:2695546/36‑1 (MQ=255)
                      aTTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCa               <  1:1142650/36‑1 (MQ=255)
                      aTTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCa               <  1:3174528/36‑1 (MQ=255)
                       ttGGCGGTATCTGGTATCGCAAAGATGTGCTGGCaa              <  1:6686057/36‑1 (MQ=255)
                        tGGCGGTATCTGGTATCGCAAAGATGTGCTGGCaaa             <  1:2662251/36‑1 (MQ=255)
                         ggCGGTATCTGGTATCGCAAAGATGTGCTGGCaaaa            >  1:4460940/1‑36 (MQ=255)
                            ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg         <  1:2329337/36‑1 (MQ=255)
                            ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg         <  1:2334591/36‑1 (MQ=255)
                            ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg         <  1:970860/36‑1 (MQ=255)
                             gTATCTGGTATCTCAAAGATGTGCTGGCAAAANNng        >  1:2535149/1‑36 (MQ=37)
                             gTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCgg        >  1:3876978/1‑36 (MQ=255)
                               aTCTGGTATCGCAAAGATGTGCTGGTAAAAGCgggc      >  1:4330773/1‑35 (MQ=255)
                               aTCTGGTATCGCAAAGATGTGCTGGCAAAAGCgggg      >  1:177373/1‑36 (MQ=255)
                                  tGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCtt   <  1:6552615/36‑1 (MQ=255)
                                  tGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCtt   <  1:7235631/36‑1 (MQ=255)
                                   ggTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTg  <  1:323655/36‑1 (MQ=255)
                                   ggTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTg  >  1:6057916/1‑36 (MQ=255)
                                   |                                   
CGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTG  >  REL606/1370693‑1370763

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG