Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,603,688 | 0 | G→C | 2.9% | 0.1 0.0 ‑0.5 | 68 | 835 | yhjD | conserved inner membrane protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/1): ref base (30/36): total (31/37) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.15e-01 |
TTCTGGCTGCTATTGGTTTTGAAGTGATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCC > REL606/3603653‑3603723
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ttCTGGCTGCTATTGGTTTTGAAGTGATTAAAATCg < 1:1019494/36‑1 (MQ=255)
ttCTGGATGCTATTGGTTTTGAAGTGATTAAAATCg < 1:2353592/36‑1 (MQ=255)
tCTGGCTGCTATTGGTTTTGAAGTGATTAAAATCGt < 1:4697696/36‑1 (MQ=255)
tCTGGCTGCTATGGGTTTTGAAGTGATTAAAAGCGt < 1:1596466/36‑1 (MQ=37)
cTGGCTGCTATTGGTTTTGAAGTGATTAAAATCGtg < 1:5097637/36‑1 (MQ=255)
tGGCTGCTATTGGTTTTGAAGTGATTAAAATCGtga < 1:5254352/36‑1 (MQ=255)
ggCTGCTATTGGTTTTGAAGTGATTAAAATCGtgat > 1:7218678/1‑36 (MQ=255)
ggCTGCTATTGGTTTTGAAGTGATTAAAATCGtgat < 1:6788251/36‑1 (MQ=255)
ggCTGCTATTGGTTTTGAAGTGATTAAAATCGtgat > 1:244429/1‑36 (MQ=255)
ggCTGCTATTGGTTTTGAAGTGATTAAAATCGtgat > 1:6063529/1‑36 (MQ=255)
gctgctATTGGTTTTGAAGTGATTAAAATCGtgatg > 1:6386684/1‑36 (MQ=255)
ctgctATTGGTTTTGAAGTGATTAAAATCGtgatga > 1:6166911/1‑36 (MQ=255)
tgctATTGGTTTTGAAGTGATTAAAATCGTGATGAc < 1:4152338/36‑1 (MQ=255)
ctATTGGTTTTGAAGTGATTAAAATCGTGGTGACCt < 1:4367423/36‑1 (MQ=255)
ctATTGGTTTTGAAGTGATTAAAATCGTGATGACCt < 1:1506262/36‑1 (MQ=255)
tATTGGTTTTGAAGTGATTAAAATCGTGATGACCTa > 1:7862072/1‑36 (MQ=255)
aTTGGTTTTGAAGTGATTAAAATCGTGATGACCTac < 1:5110408/36‑1 (MQ=255)
aTTGGTTTTGAAGTGATTAAAATCGTGATGACCTac > 1:3312050/1‑36 (MQ=255)
aTTGGTTTTGAAGTGATTAAAATCGTGATGACCTac < 1:7594339/36‑1 (MQ=255)
aTTGGTTTTGAAGTGATTAAAATCGTGATGACCTac > 1:7342311/1‑36 (MQ=255)
aTTGGTTTTGAAGTGATTAAAATCCTGATGACCTac < 1:3733804/36‑1 (MQ=255)
ttGGTTTTGAAGTGATTAAAATCGTGATGACCTaca > 1:1165289/1‑36 (MQ=255)
ttGGTTTTGAAGTGATTAAAATCGTGATGACCTaca < 1:5497914/36‑1 (MQ=255)
tGGTTTTGAAGTGATTAAAATCGTGATGACCTacac > 1:3437805/1‑36 (MQ=255)
tGGTTTTGAAGTGATTAAAATCGTGATGACCTacac > 1:6079678/1‑36 (MQ=255)
ggTTTTGAAGTGATTAAAATCGTGATGACCTACAcc < 1:460164/36‑1 (MQ=255)
ggTTTTGAAGTGATTAAAATCGTGATGACCTACAcc > 1:7354744/1‑36 (MQ=255)
ggTTTTGAAGTGATTAAAATCGTGATGACCTACAcc < 1:3896514/36‑1 (MQ=255)
gTTTTGAAGTGATTAAAATCGTGATGACCTACAccc < 1:4551521/36‑1 (MQ=255)
ttttGAAGTGATTAAAATCGTGATGACCTACACCCt > 1:4494694/1‑36 (MQ=255)
ttttGAAGTGATTAAAATCGTGATGACCTACACCCt < 1:7809611/36‑1 (MQ=255)
tttGAAGTGATTAAAATCGTGATGACCTACACCCTg > 1:257438/1‑36 (MQ=255)
ttGAAGTGATTAAAATCGTGATGACCTACACCCTGc > 1:6244580/1‑36 (MQ=255)
ttGAAGTGATTAAAATCGTGATGACCTACACCCTGc > 1:502945/1‑36 (MQ=255)
ttGAAGTGATTAAAATCGTGATGACCTACACCCTGc < 1:4887141/36‑1 (MQ=255)
ttGAAGTGATTAAAATCGTGATGACCTACACCCTGc < 1:4723373/36‑1 (MQ=255)
ttGAAGTGATTAAAATCGTGATGACCTACACCCTGc < 1:230783/36‑1 (MQ=255)
tGAAGTGATTAAAATCGTGATGACCTACACCCTGcc > 1:770744/1‑36 (MQ=255)
gAAGTGATTAAAATCGTGATGACCTACACCCTGCCa < 1:4910822/36‑1 (MQ=255)
gAAGTGATTAAAATCGTGATGACCTACACCCTGCCa > 1:2403058/1‑36 (MQ=255)
aaGTGATTAAAATCGTGATGACCTACACCCTGCCAt > 1:4945201/1‑36 (MQ=255)
aaGTGATTAAAATCGTGATGACCTACACCCTGCCAt < 1:4711438/36‑1 (MQ=255)
aGTGATTAAAATCGTGATTACCTACACCCTGCCATc < 1:6151588/36‑1 (MQ=255)
aGTGATTAAAATCGTGATGACCTACACCCTGCCATc < 1:5805714/36‑1 (MQ=255)
aGTGATTAAAATCGTGATGAACTACACCCTGCAATc > 1:1916023/1‑36 (MQ=37)
aGTGATTAAAATCCTGATGACCTACACCCTGCCATc > 1:7175574/1‑36 (MQ=255)
gTGATTAAAATCGTGATGACCTACACCCTGCCATCg > 1:6713595/1‑36 (MQ=255)
tGATTAAAATCGTGATGGCCTACACCCTGCCATCGt < 1:1428364/36‑1 (MQ=255)
tGATTAAAATCGTGATGACCTACACCCTGCCATCGt < 1:6366913/36‑1 (MQ=255)
gATTAAAATCGTGATGACCTACACCCTGCCATCGtt < 1:5784217/36‑1 (MQ=255)
gATTAAAATCGTGATGACCTACACCCTGCCATCGtt < 1:5362268/36‑1 (MQ=255)
aTTAAAATCGTGATTACCTACACCCTGCCATCGTtg < 1:6760389/36‑1 (MQ=255)
aTTAAAATCGTGATGACCTACACCCTGCCATCGTtg > 1:4620846/1‑36 (MQ=255)
ttAAAATCGTGATGACCTACACCCTGCCATCGTtga < 1:4912069/36‑1 (MQ=255)
tAAAATCGTGATGACCTACACCCTGCCATCGTtgat < 1:6950536/36‑1 (MQ=255)
tAAAATCGTGATGACCTACACCCTGCCATCGTtgat < 1:5794303/36‑1 (MQ=255)
tAAAATCGTGATGACCTACACCCTGCCATCGTtgat < 1:2305026/36‑1 (MQ=255)
tAAAATCGTGATGACCTACACCCTGCCATCGTtgat < 1:2296018/36‑1 (MQ=255)
aaaaTCGTGATGACCTACACCCTGCCATCGTtgatg > 1:243968/1‑36 (MQ=255)
aaaaTCGTGATGACCTACACCCTGCCATCGTtgatg > 1:516144/1‑36 (MQ=255)
aaaTCGTGATGACCTATACCCTGCCATCGTtgatga > 1:7600835/1‑36 (MQ=255)
aaacGTGATGTCCTACGCCCTGCCATCGTTGATGaa < 1:4588605/33‑1 (MQ=25)
aaTCGTGATGACCTAGACCCTGACATCGTTGATGaa > 1:5962480/1‑36 (MQ=38)
aaTCGTGATGACCTACACCCTGCCATCGTTGATGaa < 1:4170541/36‑1 (MQ=255)
aaTCGTGATGACCTACACCCTGCCATCGTTGATGaa > 1:3959124/1‑36 (MQ=255)
aTCGTGATGACCTACACCCTGCCATCGTTGATGaaa > 1:812636/1‑36 (MQ=255)
aTCGTGATGACCTACACCCTGCCATCGTTGATGaaa > 1:3637137/1‑36 (MQ=255)
aTCGTGATGACCTACACCCTCCCATCGTTGATGaaa > 1:2691244/1‑36 (MQ=255)
cGTGATGACCTACACCCTGCCATCGTTGATGAAATc < 1:229060/36‑1 (MQ=255)
cGTGATGACCTACACCCTGCCATCGTTGATGAAATc < 1:1211364/36‑1 (MQ=255)
gTGATGACCTACACCCTGCCATCGTTGATGAAATcc > 1:4057266/1‑36 (MQ=255)
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TTCTGGCTGCTATTGGTTTTGAAGTGATTAAAATCGTGATGACCTACACCCTGCCATCGTTGATGAAATCC > REL606/3603653‑3603723
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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