Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 306,033 | G→T | 20.6% | L338F (TTG→TTT) | yahA → | predicted DNA‑binding transcriptional regulator |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 306,033 | 0 | G→T | 20.6% | 2.5 ‑4.0 0.0 | 35 | 1014 | yahA | predicted DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): new base (7/1): ref base (10/17): total (17/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.78e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTACCGGGTAA > REL606/306000‑306068
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ggATTTAATGATCGGTCAATGCGTTCACTTTTTGCa < 1:3389521/36‑1 (MQ=37)
aTTTAATGATCGGTAAAGGCGTTCACTTTTTGCAgg < 1:211713/36‑1 (MQ=255)
tttAATGATCGGTAAAGGTGTTCACTTTTTGCAtgg > 1:1335955/1‑36 (MQ=37)
tttAATGATCGGTAAAGGCGTTCACTTTTTTCAgtg > 1:882694/1‑34 (MQ=37)
tttAATGATCGGTAAAGGCGTTCACTTTTTGCAggg < 1:421671/36‑1 (MQ=255)
ttAATGATCGGTAAAGGCGTTCACTTTTTTCAgggg > 1:4135391/1‑35 (MQ=255)
ttAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGc > 1:571281/1‑36 (MQ=255)
tAATGATCGGTAAAGGCGTTCGCTTTTTGCAGGGCt < 1:4831399/36‑1 (MQ=255)
aaTGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTa > 1:4536835/1‑36 (MQ=255)
tGATCGGTAAAGGCGTTTACTTTTTTAAGGGCTAtt > 1:3272404/1‑36 (MQ=25)
gATCGGTAAAGGCGTTCACTTTTTGCAGGGCTAttt < 1:843962/36‑1 (MQ=255)
aTCGGTAAAGGCGTTCCCTTTTTTCAGGGCTCtttt > 1:2350305/1‑35 (MQ=21)
aTCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTTg < 1:2549207/36‑1 (MQ=255)
tCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTTGt < 1:2177242/36‑1 (MQ=255)
ctgTAAAGCCGTTCCCTTTTTTCAGGGCTATTTGTa < 1:1410150/34‑1 (MQ=21)
cGGTAAAGGCGTTCACTTTTTTCAGGGCTATTTTTa > 1:3406383/1‑36 (MQ=37)
ggTAAAGGCGTTCACTTTTTTCTTGGCTATTTGTAc > 1:1615872/1‑36 (MQ=25)
gTAAAGGCGTTCACTTTTTGCAGGGCTATTTTTAct > 1:3022754/1‑36 (MQ=255)
gTAAAGGCGTTCACTTTTTGCAGGGCTATTTGTAct < 1:628262/36‑1 (MQ=255)
aaaGGCGTTCACTTTTTGCAGGGCTATTTGTActct < 1:3629814/36‑1 (MQ=255)
aaaGGCGTTCACTTTTTGCAGGGCTATTTGTActct < 1:3236007/36‑1 (MQ=255)
aaGGCGTTCACTTTTTGCAGGGCTATTTGTACtctc > 1:2831941/1‑36 (MQ=255)
aGGCGTTCACTTTTTTCAGGGCTATTTGTActctac > 1:5724830/1‑34 (MQ=38)
aGGCGTTCACTTTTTGCAGGGCTATTTGTACTCTcc < 1:2236733/36‑1 (MQ=255)
gCGTTCACTTTTTGCAGGGCTATTTGTACTCTCCGc > 1:3758807/1‑36 (MQ=255)
cGTTCACTTTTTGCAGGGCTATTTGTACTCTCCGcc < 1:4222126/36‑1 (MQ=255)
gTTCACTTTTTGCAGGGCTATTTGTACTCTCCGCCa > 1:501088/1‑36 (MQ=255)
ttCACTTTTTGCAGGGCTATTTGTACTCTCCGCCAg > 1:5466457/1‑36 (MQ=255)
tCACTTTTTGCAGGGCTATTTTTACTCTCCGCCAGt > 1:3585792/1‑36 (MQ=255)
aCTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTAc < 1:5229084/36‑1 (MQ=255)
aCTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTAc > 1:1507925/1‑36 (MQ=255)
cTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTAcc < 1:5371917/36‑1 (MQ=255)
cTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTAcc < 1:2637290/36‑1 (MQ=255)
ttttGCAGGGCTATTTGTACTCTCCGCCAGTACCgg < 1:3272743/36‑1 (MQ=255)
ttGCAGGGCTATTTGTACTCTCCGCCAGTACCGGGt < 1:4053085/36‑1 (MQ=255)
gCAGGGCTATTTGTACTCTCCGCCAGTACCGGGtaa < 1:3452665/36‑1 (MQ=255)
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GGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTTGTACTCTCCGCCAGTACCGGGTAA > REL606/306000‑306068
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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