Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 64,346 | C→G | 10.7% | A575P (GCC→CCC) | hepA ← | ATP‑dependent helicase HepA |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 64,346 | 0 | C→G | 10.7% | 2.2 ‑3.0 ‑0.0 | 45 | 1723 | hepA | ATP‑dependent helicase HepA |
Reads supporting (aligned to +/- strand): new base (4/1): ref base (12/27): total (16/29) | ||||||||||
Fisher's exact test strand distribution p-value = 5.09e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.11e-01 |
GTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTG > REL606/64311‑64381
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gTTGAATGGCAGGTCAAACATCACCATGtggctggc < 1:1609569/36‑1 (MQ=255)
gTTGAATGGCAGGTCAAACATCACCATGtggctggc < 1:7110130/36‑1 (MQ=255)
tGAATGGCAGGTCAAACATCACCATGTGGCTGGCGa < 1:4968527/36‑1 (MQ=255)
gAATGGCAGGTCAAACATCACCATGTGGCTGGCGaa < 1:1553176/36‑1 (MQ=255)
gAATGGCAGGTCAAACATCACCATGTGGCTGGCGaa < 1:4098812/36‑1 (MQ=255)
aaTGGCAGGTCAAACATCACCATGTGGCTGGGGAAc < 1:5999892/36‑1 (MQ=255)
aaTGGCAGGTCAAACATCACCATGTGGCTGGCGAAc < 1:271436/36‑1 (MQ=255)
tGGCAGGTCAAACATCACCATGTGGCTGGGGGACTg > 1:4889685/1‑36 (MQ=37)
ggCAGGTCAAACATCACCATGTGGCTGGCGAACTgg < 1:6001603/36‑1 (MQ=255)
ggCAGGTCAAACATCACCATGTGGCTGGCGAACTgg < 1:5833448/36‑1 (MQ=255)
gCAGGTCAAACATCACCATGTGGCTGGGGGACTggg > 1:7686456/1‑35 (MQ=37)
gCAGGTCAAACATCACCATGTGGCTGGCGAACTGGa < 1:6112884/36‑1 (MQ=255)
aGGTCAAACATCACCATGTGGCTGGCGGACTGGGAg > 1:6560756/1‑36 (MQ=37)
aGGTCAAACATCACCATGTGGCTGGCGAACCGGGAg > 1:6547997/1‑36 (MQ=37)
ggTCAAACATCACCATGTGGCTGGCGGACTGGAAgg > 1:201237/1‑35 (MQ=255)
ggTCAAACATCACCATGTGGCTGGCGAACTGGAAGt < 1:2346282/36‑1 (MQ=255)
tCAAACATCACCATGTGGCTGGCGAACTGGGAGttt > 1:647881/1‑35 (MQ=255)
tCAAACATCACCATGTGGCTGGCGAACTGGAAGTTa < 1:2733820/36‑1 (MQ=255)
cAAACATCACCATGTGGCTGGCGGACTCGAAGTTaa > 1:3527037/1‑35 (MQ=37)
aaaCATCTCCAGGTGGCTGGAGAGCTGGAAGTTACg < 1:6783525/36‑1 (MQ=19)
aaaCATCACCATGTGGCTGGCGAACTGGAAGTTACg < 1:3732241/36‑1 (MQ=255)
aaCATCACCATGTGGCTGGCGAACTTGAAGTTACGt > 1:6811242/1‑36 (MQ=255)
aaCATCACCATGTGGCTGGCGAACTGGAAGTTACGt < 1:5207694/36‑1 (MQ=255)
aaCATCACCATGTGGCTGGCGAACTGGAAGTTACGt < 1:22366/36‑1 (MQ=255)
aaCATCACCATGTGGCTGGCGAACTGGAAGTTACGt < 1:7736959/36‑1 (MQ=255)
aCATCACCATGTGGCTGGCGAACTGGAAGTTACGTc < 1:3745730/36‑1 (MQ=255)
cATCACCATGTGGCTGGCGGACTGGAAGTTACGTcc > 1:2368169/1‑36 (MQ=255)
cATCACCATGTGGCTGGCGAACTGGGAGTTACGTcc > 1:6181848/1‑36 (MQ=255)
aTCACCATGTGGCTGGGGAACTGGAAGTTACGTTCt > 1:2697829/1‑36 (MQ=37)
aTCACCATGTGGCTGGCGGACTTGAAGTTTCTTCCt > 1:5040044/1‑36 (MQ=19)
tCACCATGTGGCTGGCGGGCTTGGAGTTTCGTCCtt > 1:2840601/1‑36 (MQ=16)
tCACCATGTGGCTGGCGAACTGGAAGTTACGTCCtt < 1:7822684/36‑1 (MQ=255)
ctccATGTGGCTGGCGAACTGGAAGTTACGTCCTTc < 1:534287/34‑1 (MQ=255)
cACCATGTGGCTGGGCGACTGGAAGTTTCCTCCTTc > 1:5941767/1‑36 (MQ=16)
aCCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCa < 1:3677741/36‑1 (MQ=255)
aCCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCa < 1:6163292/36‑1 (MQ=255)
aCCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCa < 1:799755/36‑1 (MQ=255)
aCCATGTGGCTGGCCAACTGGAAGGTACGTCCTTcc > 1:8320948/1‑35 (MQ=37)
ccATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAg < 1:6268166/36‑1 (MQ=255)
cATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGa < 1:6103647/36‑1 (MQ=255)
cATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGa < 1:4438713/36‑1 (MQ=255)
cATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGa < 1:6531303/36‑1 (MQ=255)
cATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGa < 1:7047233/36‑1 (MQ=255)
cATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGa > 1:5665776/1‑36 (MQ=255)
aTGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGaa < 1:7301085/36‑1 (MQ=255)
gtgGCTGGCGAACTGGAAGTTACGTCCTTCAGAAcc < 1:1186028/36‑1 (MQ=255)
gtgGCTGGCGAACTGGAAGTTACGTCCTTCAGAAcc < 1:2633364/36‑1 (MQ=255)
tggctggcGAACTGGAAGTTACGTCCTTCAGAACCg < 1:956809/36‑1 (MQ=255)
tggctggcGAACTGGAAGTTACGTCCTTCAGAACCg > 1:2726856/1‑36 (MQ=255)
tggctggcGAACTGGAAGTTACGTCCTTCAGAACCg > 1:5329739/1‑36 (MQ=255)
ggctggcGAACTGGAAGTTACGTCCTTCAGAACCGa < 1:8459627/36‑1 (MQ=255)
ggctggcGAACTGGAAGTTACGTCCTTCAGAACCGa < 1:216924/36‑1 (MQ=255)
ggctggcGAACTGGAAGTTACGTCCTTCAGAACCGa < 1:295633/36‑1 (MQ=255)
ggctggcGAACTGGAAGTTACGTCCTTCAGAACCGa > 1:614676/1‑36 (MQ=255)
ggctggcGAACTGGAAGTTACGTCCTTCAGAACCGa > 1:6168808/1‑36 (MQ=255)
gctggtGAACTGGAAGTTACGTCCTTCAGAACCGAt < 1:7161316/36‑1 (MQ=255)
gctggcGAACTGGAAGTTACGTCCTTCAGAACCGAt > 1:3338744/1‑36 (MQ=255)
gctggcGAACTGGAAGTTACGTCCTTCAGAACCGAt < 1:4924990/36‑1 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt < 1:596707/36‑1 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt > 1:1722994/1‑36 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt > 1:4989923/1‑36 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt > 1:7218104/1‑36 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt < 1:5270875/36‑1 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt < 1:3127794/36‑1 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt < 1:4412236/36‑1 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt > 1:3769590/1‑36 (MQ=255)
tggcGAACTGGAAGTTACGTCCTTCAGAACCGAttt < 1:6387483/36‑1 (MQ=255)
ggcGAACTGGAAGTTACGTCCTTCAGAACCGATTTc > 1:3229622/1‑36 (MQ=255)
ggcGAACTGGAAGTTACGTCCTTCAGAACCGATTTc < 1:4873767/36‑1 (MQ=255)
ggcGAACTGGAAGTTACGTCCTTCAGAACCGATTTc > 1:3653565/1‑36 (MQ=255)
ggcGAACTGGAAGTTACGTCCTTCAGAACCGATTTc < 1:5893111/36‑1 (MQ=255)
ggcGAACTGGAAGTTACGTCCTTCAGAACCGATTTc > 1:1884200/1‑36 (MQ=255)
gcGAACTGGAAGTTACGTCCTTCAGAACCGATTTCt < 1:3547070/36‑1 (MQ=255)
gcGAACTGGAAGTTACGTCCTTCAGAACCGATTTCt < 1:2005342/36‑1 (MQ=255)
gcGAACTGGAAGTTACGTCCTTCAGAACCGATTTCt < 1:3823782/36‑1 (MQ=255)
gcGAACTGGAAGTTACGTCCTTCAGAACCGATTTCt < 1:586477/36‑1 (MQ=255)
gcGAACTGGAAGTTACGTCCTTCAGAACCGATTTCt > 1:5258329/1‑36 (MQ=255)
cGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTg > 1:6268957/1‑36 (MQ=255)
cGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTg < 1:4035636/36‑1 (MQ=255)
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GTTGAATGGCAGGTCAAACATCACCATGTGGCTGGCGAACTGGAAGTTACGTCCTTCAGAACCGATTTCTG > REL606/64311‑64381
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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