Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 54 [3] | [0] 44 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 37 (0.670) | 27/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT > REL606/3894961‑3895031
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tCGTGTTTAACTGTCCACCTTTTTGGGGTCAGTACA < 1:5274840‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGTTCAGTACA > 1:7929304‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6343875‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3295321‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:3936365‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1784105‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:7901925‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7444619‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:5115105‑M1/1‑36 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg < 1:2364375‑M1/36‑2 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt < 1:2697924‑M1/36‑4 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt < 1:1204577‑M1/36‑4 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:1766025/36‑1 (MQ=38)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:3569420/36‑1 (MQ=38)
gtTTAACTGTCCAACTTTGTGAGGTAACTACAggtt > 1:6897046/1‑33 (MQ=2)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc < 1:24570‑M1/36‑8 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc > 1:7447282‑M1/1‑29 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc < 1:1530738‑M1/36‑9 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc > 1:3425479‑M1/1‑28 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc > 1:3832823‑M1/1‑28 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgcca > 1:6944651‑M1/1‑28 (MQ=255)
aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca > 1:6861061‑M1/1‑27 (MQ=255)
aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca < 1:3216303‑M1/36‑10 (MQ=255)
cTGTCCAACTTTTTGGGGTCAGTACAggttgcccag < 1:6193507‑M1/36‑11 (MQ=255)
gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt > 1:4716605‑M1/1‑24 (MQ=255)
tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg < 1:6601788‑M1/36‑14 (MQ=255)
tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg < 1:1182490‑M1/36‑14 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc < 1:3280724‑M1/36‑17 (MQ=255)
cTTTTTGGGGTCAGTACAggttgcccaggtgaccag > 1:880125‑M1/1‑18 (MQ=255)
tttttGGGGTCAGTACAggttgcccaggtgaccagc < 1:2095577‑M1/36‑20 (MQ=255)
tttttGGGGTCAGTACAggttgcccaggtgaccagc > 1:2898066‑M1/1‑17 (MQ=255)
ttttGGGGTCAGTACAggttgcccaggtgaccagca < 1:934093‑M1/36‑21 (MQ=255)
tttGGGGTCAGTACAggttgcccaggtgaccagcac < 1:2344073‑M1/36‑22 (MQ=255)
tGGGGTCAGTACAggttgcccaggtgatcagcacgc < 1:5586980‑M1/36‑24 (MQ=255)
tGGGGTCAGTACAggttgcccaggtgaccagcacgc < 1:178612‑M1/36‑24 (MQ=255)
tGGGGTCAGTACAggttgcccaggtgaccagcacgc > 1:6120011‑M1/1‑13 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:4938404‑M1/36‑25 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc > 1:7129715‑M1/1‑12 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:2951071‑M1/36‑25 (MQ=255)
gggTCAGTACAggttgcccaggtgaccagcacgccg > 1:6339565‑M1/1‑11 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:6410723‑M1/36‑28 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:3540023‑M1/36‑28 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc > 1:5843826‑M1/1‑9 (MQ=255)
aGTACAggttgcccaggtgaccagcacgccgccaag < 1:4306323‑M1/36‑31 (MQ=255)
aGTACAggttgcccaggtgaccagcacgccgccaag < 1:4718499‑M1/36‑31 (MQ=255)
aGTACAggttgcccaggtgaccagcacgccgccaag < 1:4545028‑M1/36‑31 (MQ=255)
tACAggttgcccaggtgaccagcacgccgccaagaa > 1:3241821‑M1/1‑4 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac > 1:7877541‑M1/1‑3 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac > 1:4986518‑M1/1‑3 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac < 1:4427222‑M1/36‑34 (MQ=255)
cAggttgcccaggtgaccagcacgccgccaagaacg > 1:5133658‑M1/1‑2 (MQ=255)
cAggttgcccaggtgaccagcacgccgccaagaacg < 1:4312572‑M1/36‑35 (MQ=255)
aggttgcccaggtgaccagcacgccgccaagaacgg > 1:3999297‑M1/1‑1 (MQ=255)
aggttgcccaggtgaccagcacgccgccaagaacgg < 1:5549332‑M1/36‑36 (MQ=255)
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TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT > REL606/3894961‑3895031
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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