Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,992,578 | C→G | 16.8% | A191P (GCC→CCC) | ECB_03721 ← | conserved hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,992,578 | 0 | C→G | 16.8% | 3.1 ‑1.9 0.0 | 60 | 571 | ECB_03721 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (10/1): ref base (30/17): total (41/19) | ||||||||||
Fisher's exact test strand distribution p-value = 1.46e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AATATGCCCGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATACGGGACATGAGAAAACTTCGCA > REL606/3992543‑3992612
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aaTATGCCCGCCTAACAGGCCTGTAATGGCAGGGGc > 1:1127687/1‑36 (MQ=255)
aaTATGCCCGCCTAACAGGCCTGTAATGGCAGGGGc < 1:3644172/36‑1 (MQ=255)
atatGCCCGCCTAACAGGCCTGTAATGGCAGGGGCt < 1:1049320/36‑1 (MQ=255)
atatGCCCGCCTAACAGGCCTGTAATGGCAGGGGCt > 1:5728468/1‑36 (MQ=255)
tatGCCCGCCTAACAGGCCTGTAATGGCAGGGGGTg > 1:394686/1‑36 (MQ=255)
tatGCCCGCCTAACAGGCCTGTAATGGCAGGGGGTg > 1:3671416/1‑36 (MQ=255)
tatGCCCGCCTAACAGGCCTGTAATGGCAGGGGCTg > 1:3110520/1‑36 (MQ=255)
ccGCCTAACAGGCCTGTAATGGCAGGGGCTGCGcct < 1:6901977/36‑2 (MQ=255)
cGCCTAACAGGCCTGTAATGGCAGGGGCTTGGCCGt > 1:1307258/1‑36 (MQ=37)
cGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGt > 1:1032713/1‑36 (MQ=255)
cGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGt < 1:1396884/36‑1 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGGTGGGCCggg > 1:3907025/1‑34 (MQ=37)
gCCTAACAGGCCTGTAATGGCAGGGGGTGCGCCGTc > 1:6712144/1‑36 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGATTCGCCGTc > 1:7400858/1‑36 (MQ=37)
ccTAACAGGCCTGTAATGGCAGGGGGTTCGCCGTct > 1:7203557/1‑35 (MQ=37)
cTAACAGGCCTGTCATGGCAGGGGGTGCGCCGTCAt > 1:4340849/1‑36 (MQ=38)
cTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCAt < 1:6956557/36‑1 (MQ=255)
cTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCAt < 1:1778347/36‑1 (MQ=255)
tAACAGGCCTGTAATGGCAGGGGGTGCGCCGTTATa > 1:3163418/1‑36 (MQ=37)
tAACAGGCCTGTAATGGCAGGGGGTGCGCCGTCATa < 1:1387531/36‑1 (MQ=255)
tAACAGGCCTGTAATGGCAGGGGGTGCGCCGGCATa > 1:4580792/1‑36 (MQ=37)
tAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATa > 1:6576484/1‑36 (MQ=255)
tAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATa < 1:4729011/36‑1 (MQ=255)
tAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATa < 1:1532555/36‑1 (MQ=255)
cAGGCCTGTAATGGCAGGGGGTGCGGCGTCATATgg > 1:6980184/1‑36 (MQ=37)
cAGGCCTGTAATGGCAGGGGCTTCGCCGTCCTTCgg > 1:4914027/1‑36 (MQ=25)
aGGCGTGTAATGGCAGGGGCTGCGCCGTCATACggg < 1:4346568/36‑1 (MQ=255)
aGGCCTGTAATGGCAGGGGCTGGGCCGTCAGACcgg > 1:7444523/1‑36 (MQ=25)
aGGCCTGTAATGGCAGGGGCTGCGGCGTCATACggg > 1:5982359/1‑36 (MQ=255)
aGGCCTGTAATGGCAGGGGCTGCGCCGTCATACggg > 1:7294062/1‑36 (MQ=255)
aGGCCTGTAATGGCAGGGGCTGCGCCGTCATACggg > 1:4926963/1‑36 (MQ=255)
ggCCTGTAATGGCAGGGGCTGCGCCGTCCTACgggg > 1:5770968/1‑35 (MQ=255)
ggCCTGTAATGGCAGGGGCTGCGCCGTCATACGGGa < 1:3604622/36‑1 (MQ=255)
ggCCTGTAATGGCAGGGGCGGCGCCGTCCTACcggg > 1:7175357/1‑35 (MQ=25)
ccTGTAATGGCAGGGGCTGCGCCGTCATACGGGGCa > 1:1308534/1‑36 (MQ=255)
ccTGTAATGGCAGGGGCTGCGCCGTCATACGGGACa < 1:959748/36‑1 (MQ=255)
cTGTAATGGCAGGNGCTGCGCCGTCATACGGGACAt > 1:3247952/1‑36 (MQ=255)
tGTAATGGCAGGGGGTGCGGCGTCATACGGGACCTg > 1:6818063/1‑36 (MQ=255)
tAATGGCAGGCGCAGCGCCGTCATACGGGGCATgag > 1:4425913/1‑36 (MQ=18)
tGGCAGGGGCTGCGCCGTCATACGGGACATGAGaaa < 1:5523604/36‑1 (MQ=255)
tGGCAGGGGCTGCGCCGTCATACGGGACATGAGaaa > 1:3602937/1‑36 (MQ=255)
tGGCAGGGGCTGCGCCGTCATACGGGACATGAGaaa > 1:1739113/1‑36 (MQ=255)
tGGCAGGGGATGCGCCGTCATACGGGACATGAGaaa < 1:6807599/36‑1 (MQ=255)
ggCAGGGGCTGCGCCGTCATACGGGACATGAGaaaa < 1:3510456/36‑1 (MQ=255)
gCAGGGGCTGCGCCGTCATACGGGACATGAGAAAAc > 1:5057301/1‑36 (MQ=255)
gCAGGGGCTGCGCCGTCATACGGGACATGAGAAAAc > 1:3221058/1‑36 (MQ=255)
gCAGGGGCTGCGCCGTCATACGGGACATGAGAAAAc > 1:5275041/1‑36 (MQ=255)
gCAGGGGCTGCGCCGTCATACGGGACATGAGAAAAc > 1:2191258/1‑36 (MQ=255)
cAGGGGCTGCGCCGTCATACGGGACATGAGAAAACt > 1:5871179/1‑36 (MQ=255)
cAGGGGCTGCGCCGTCATACGGGACATGAGAAAACt > 1:7438633/1‑36 (MQ=255)
aGGGGCTGCGCCGTCATACGGGACATGAGAAAACtt > 1:5106779/1‑36 (MQ=255)
aGGGGCTGCGCCGTCATACGGGACATGAGAAAACtt > 1:6220685/1‑36 (MQ=255)
aGGGGCTGCGCCGTCATACGGGACATGAGAAAACtt < 1:5019318/36‑1 (MQ=255)
ggggCTGCGCCGTCATACGGGACATGAGAAAACTTc > 1:5117981/1‑36 (MQ=255)
ggggCTGCGCCGTCATACGGGACATGAGAAAACTTc < 1:4874246/36‑1 (MQ=255)
gggCTGCGCCGTCATACGGGACATGAGAAAACTTCg > 1:2238399/1‑36 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc < 1:707479/36‑1 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc > 1:3046585/1‑36 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc < 1:6621121/36‑1 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc < 1:4219908/36‑1 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc > 1:757598/1‑36 (MQ=255)
gCTGCGCCGTCATACGGGACATGAGAAAACTTCGCa > 1:5445492/1‑36 (MQ=255)
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AATATGCCCGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATACGGGACATGAGAAAACTTCGCA > REL606/3992543‑3992612
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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