Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 47 [4] | [2] 31 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 29 (0.530) | 21/64 | NT | 93.5% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 2 (0.030) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTG > REL606/3894961‑3895029
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tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTTCA > 1:7544149‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4083742‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:3358992‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4575894‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:472971‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2648630‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2508416‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:4757615‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:5828185‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6407107‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6650538‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:194678‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:132634‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:7938968‑M1/36‑1 (MQ=255)
gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAgg < 1:3124728‑M1/36‑3 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt > 1:6676501‑M1/1‑33 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt > 1:4333004‑M1/1‑33 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:6376532/36‑1 (MQ=38)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:6723155/36‑1 (MQ=38)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:7355919/36‑1 (MQ=38)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:108894/36‑1 (MQ=38)
tAACTGTCCGACTTTTTGGGGTCAGTACAggttgcc < 1:2257480‑M1/36‑8 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc < 1:4300724‑M1/36‑9 (MQ=255)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc < 1:6885048‑M1/36‑9 (MQ=255)
aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca > 1:3241439‑M1/1‑27 (MQ=255)
cTGTCCAACTTTTTGGGGTCAGTACAggttgcccag < 1:1501402‑M1/36‑11 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg > 1:5260205‑M1/1‑25 (MQ=255)
gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt < 1:7182572‑M1/36‑13 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc > 1:2295320‑M1/1‑20 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc < 1:3944526‑M1/36‑17 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggcgacc > 1:5208128‑M1/1‑20 (MQ=255)
aaCTTTTTCGGGTCAGTACAggttgcccaggtgacc > 1:2802335‑M1/1‑20 (MQ=255)
cTTTTTGGGGTCAGTACAggttgcccaggtgaccag > 1:1798994‑M1/1‑18 (MQ=255)
tttttGGGGTCAGTACAggttgcccaggtgaccagc < 1:2402067‑M1/36‑20 (MQ=255)
tttGGGGTCAGTACAggttgcccaggtgaccagcac < 1:5389028‑M1/36‑22 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:5473568‑M1/36‑25 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:5727704‑M1/36‑25 (MQ=255)
ggTCAGTACAggttgcccaggtgaccagcacgccgc < 1:7057901‑M1/36‑27 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:1546030‑M1/36‑28 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc > 1:7214063‑M1/1‑9 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:2322056‑M1/36‑28 (MQ=255)
tCAGTACAggttgcccaggtgaccagcacgccgcca < 1:3049105‑M1/36‑29 (MQ=255)
cAGTACAggttgcccaggtgaccagcacgccgccaa > 1:633399‑M1/1‑7 (MQ=255)
cAGTACAggttgcccaggtgaccagcacgccgccaa < 1:5746792‑M1/36‑30 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac < 1:2402568‑M1/36‑34 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac < 1:2415721‑M1/36‑34 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagaac < 1:94320‑M1/36‑34 (MQ=255)
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TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTG > REL606/3894961‑3895029
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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