Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,019,082 | T→G | 18.1% | V62G (GTA→GGA) | ycbT → | predicted fimbrial‑like adhesin protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,019,082 | 0 | T→G | 18.1% | 3.0 ‑3.4 0.0 | 33 | 185 | ycbT | predicted fimbrial‑like adhesin protein |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (14/12): total (21/12) | ||||||||||
Fisher's exact test strand distribution p-value = 3.19e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TAAAACCCTGGAGGAAGAAGCAAATACGGCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAACGAATCGA > REL606/1019047‑1019117
|
tAAAACCCTGGAGGAAGAAGCAAATACGGCAGGGGt < 1:5698095/36‑1 (MQ=255)
aaaCCCTGGAGGAAGAAGCAAATACGGCAGGGGGAg > 1:4877257/1‑36 (MQ=255)
aCCCTGGAGGAAGAAGCAAATACGGCAGGGGTAGtt < 1:5626310/36‑1 (MQ=255)
tGGAGGAAGAAGCAAATACGGCAGGGGGAGTTAAAg > 1:6812811/1‑36 (MQ=255)
tGGAGGAAGAAGCAAATACGGCAGGGGGAGCTTAAg > 1:340223/1‑36 (MQ=25)
ggaAGAAGCAAATACGGCAGGGGTAGTTAAAGACaa < 1:549576/36‑1 (MQ=255)
gaagaaGCAAATACGGCAGGGGTAGTTAAAGACaaa < 1:623920/36‑1 (MQ=255)
aagaagCAAATACGGCAGGGGTAGTTAAAGACAAAt < 1:4961005/36‑1 (MQ=255)
aagaagCAAATACGGCAGGGGTAGTTAAAGACAAAt > 1:291949/1‑36 (MQ=255)
aagaagCAAATACGGCAGGGGTAGTGAAAGACAAAt > 1:374261/1‑36 (MQ=255)
aagaagCAAATACGGCAGGGGGAGTTAAAAACaaaa > 1:1116798/1‑35 (MQ=37)
gaagAAAATACGGCAGGGGTAGTTAAAGACAAAttt < 1:3011971/36‑1 (MQ=255)
aatcAAATACGGCAGGGGTAGTTAAAGACAAAtttt < 1:7027804/33‑1 (MQ=255)
aagCAAATACGGCAGGGGTAGTTAAAGACAAAtttt > 1:1395/1‑36 (MQ=255)
aagCAAATACGGCAGGGGGAGGTAAAAAAAAAattt > 1:5777489/1‑36 (MQ=16)
cAAATTCGTCAGGGGTAGTTAAAGACAAATTTTATc < 1:6467296/36‑1 (MQ=37)
cAAATACGGCAGGGGGGGTTTAAGAGAAAatttttt > 1:2603607/1‑33 (MQ=255)
cAAATACGGCAGGGGGACTTTAAGACAAATTTTTTc > 1:6177539/1‑36 (MQ=255)
aaTACGGCAGGGGTAGTTAAAGACAAATTTTATCAg > 1:1114447/1‑36 (MQ=255)
tACGGCAGGGGTAGTTAAAGACAAATTTTATCAGTg < 1:6745046/36‑1 (MQ=255)
ggCAGGGGTAGTTAAAGAAAAATTTTATCAGTGGaa > 1:4236797/1‑36 (MQ=255)
gCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAAc > 1:978642/1‑36 (MQ=255)
gCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAAc > 1:7113529/1‑36 (MQ=255)
gCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAAc > 1:2580317/1‑36 (MQ=255)
gCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAAc > 1:3644836/1‑36 (MQ=255)
gCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAAc > 1:4558247/1‑36 (MQ=255)
aGGGGTAGTTAAAGACAAATTTTATCAGTGGAAcga > 1:2931343/1‑36 (MQ=255)
aGGGGTAGTTAAAGACAAATTTTATCAGTGGAAcga < 1:6588957/36‑1 (MQ=255)
aGGGGTAGTTAAAGACAAATTTTATCAGTGGAAcga > 1:7265365/1‑36 (MQ=255)
ggggTAGTTAAAGACAAATTTTATCAGTGGAAcgaa > 1:4052915/1‑36 (MQ=255)
gggTAGTTAAAGACAAATTTTATCAGTGGAAcgaat > 1:2078010/1‑36 (MQ=255)
ggTAGTTAAAGACAAATTTTATCAGTGGAAcgaatc < 1:5824494/36‑1 (MQ=255)
ggTAGTTAAAGACAAATTTTATCAGTGGAAcgaatc < 1:1768790/36‑1 (MQ=255)
ggTAGTTAAAGACAAATTTTATCAGTGGAAcgaatc < 1:4029200/36‑1 (MQ=255)
tAGTTAAAGACAAATTTTATCTGTGGAAcgaatcga < 1:6332456/36‑1 (MQ=255)
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TAAAACCCTGGAGGAAGAAGCAAATACGGCAGGGGTAGTTAAAGACAAATTTTATCAGTGGAACGAATCGA > REL606/1019047‑1019117
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
|