Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,134,189 | G→T | 17.8% | D414Y (GAT→TAT) | yegT → | predicted nucleoside transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,134,189 | 0 | G→T | 17.8% | 5.3 ‑3.8 0.0 | 53 | 1240 | yegT | predicted nucleoside transporter |
Reads supporting (aligned to +/- strand): new base (11/0): ref base (26/16): total (37/16) | ||||||||||
Fisher's exact test strand distribution p-value = 2.25e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAA > REL606/2134157‑2134223
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ccGACAACGAAATTACGGCTAACAAAGGCGATTATc > 1:4346569/1‑36 (MQ=19)
aCAACGAAATTACGGCTATCAAGGTCGATTATcgcg > 1:7411304/1‑36 (MQ=255)
aCAACGAAATTACGGCTATCAAGGTCGATTAGcgcg > 1:3318631/1‑36 (MQ=38)
cAACGAAATTACGGCTATCAAGGTCGATTATCGCGa > 1:4428941/1‑36 (MQ=255)
cAACGAAATTACGGCTATCAAGGTCGATTATCGCGa > 1:2424255/1‑36 (MQ=255)
cAACGAAATTACGGCTATCAAGGTCGATGATCGCGa < 1:3209485/36‑1 (MQ=255)
aaCGAAATTACGGCTATCAAGGTCGATTATcgcgct > 1:6685718/1‑34 (MQ=37)
aaCGAAATTACGGCTATCAAGGTCGATGATCGCGat < 1:367569/36‑1 (MQ=255)
aaCGAAATTACGGCTATCAAGGTCGATGATCGCGat < 1:3492094/36‑1 (MQ=255)
aaCGAAATTACGGCTATCAAGGGCGATGATCGCGat > 1:5831/1‑36 (MQ=255)
aCGAAATTACGGCTATCAAGGTCGATTATCGCGata > 1:1818177/1‑36 (MQ=255)
aCGAAATTACGGCTATCAAAGTCGATGATCGCGata > 1:5704893/1‑36 (MQ=255)
aCGAAATTACGGCTATAAAGGGCGAGTATCGCGata > 1:1897726/1‑36 (MQ=19)
cGAAATTACGGCTATCAAGGTCGATGATCGCGatat > 1:54363/1‑36 (MQ=255)
gAAATTACGGCTATCAAGGTCGATGATCGCGATAtt < 1:4037140/36‑1 (MQ=255)
aaaTTACGGCTATCAAGGTCGATGATCGCGATATTg > 1:7096913/1‑36 (MQ=255)
aaaTTACGGCTATCAAGGTCGATGATCGCGATATTg > 1:5945038/1‑36 (MQ=255)
aaTTACGGCTATCAAGGTCGATGATCGCGATATTGc > 1:7268310/1‑36 (MQ=255)
aTTACGGCTATCAAGGTCGATTATCGCGATATTGCg > 1:7350432/1‑36 (MQ=255)
aTTACGGCTATCAAGGTCGATGATCGCGATATTGCg > 1:449250/1‑36 (MQ=255)
ttACGGCTATCAAGGTCGATGATCGCGATATTGCGt < 1:1504084/36‑1 (MQ=255)
tACGGCTATCAAGGTCTATGATCGCGATATTGCGtt < 1:6441566/36‑1 (MQ=255)
tACGGCTATCAAGGTCGATGATCGCGATATTGCggt > 1:5838571/1‑34 (MQ=255)
tACGGCTATCAAGGTCGATGATCGCGATATTGCGtt > 1:5080691/1‑36 (MQ=255)
aCGGCTATCAAGGTCGATTATCGCGATATTGCGTTg > 1:7266128/1‑36 (MQ=255)
aCGGCTATCAAGGTCGATTATCGCGATATTGCGTTg > 1:291542/1‑36 (MQ=255)
aCGGCTATCAAGGTCGATGATCGCGATATTGCGTTg > 1:6529961/1‑36 (MQ=255)
cGGCTATCAAGGTCGATGATCGCGATATTTTGTTGa > 1:5926278/1‑36 (MQ=37)
cGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa < 1:1178896/36‑1 (MQ=255)
cGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa < 1:4497033/36‑1 (MQ=255)
cGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa < 1:7065053/36‑1 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTTac > 1:5396669/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:4904792/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:1859907/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac < 1:5221902/36‑1 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac < 1:7433210/36‑1 (MQ=255)
gCTATCAAGGTCGATGATCGCGATATTGCGTTGaca < 1:1025051/36‑1 (MQ=255)
cTATCAAGGTCGATGATCGCGATATTGCGTTGacac < 1:7033518/36‑1 (MQ=255)
tATCAAGGTCGATGATCGCGATATTGCGTTGAcaca < 1:773962/36‑1 (MQ=255)
tATCAAGGTCGATGATCGCGATATTGCGTTGAcaca > 1:5572730/1‑36 (MQ=255)
aTCAAGGTCGATGATCGCGATATTGCGTTGACACaa > 1:4142078/1‑36 (MQ=255)
aTCAAGGTCGATGATCGCGATATTCCGTTGACACaa > 1:3166910/1‑36 (MQ=255)
aaGGTCGATGATCGCGATATTGCGTTGACACAAggg > 1:2857529/1‑36 (MQ=255)
aGGTCGATGATCGCGATATTGCGTTGACACAAgggg > 1:6533716/1‑36 (MQ=255)
aGGTCGATGATCGCGATATTGAGTTGAAACAAgggg > 1:1350791/1‑36 (MQ=37)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa < 1:422076/36‑1 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa > 1:2414725/1‑36 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa < 1:203262/36‑1 (MQ=255)
gTCGATGATCGCGATATTGCGTTGACACAAGGGGaa > 1:1067581/1‑36 (MQ=255)
gTCGATGATCGCGATATTGCGTTGACACAAGGGGaa > 1:6878317/1‑36 (MQ=255)
gTCGATGATCGCGATATTGCGTTGACACAAGGGGaa > 1:4393179/1‑36 (MQ=255)
tCGATGATCGCGATATTGCGTTGACACAAGGGGAAg > 1:5105505/1‑36 (MQ=255)
cGATGATCGCGATATTGCGTTGACACAAGGGGAAGt > 1:4188598/1‑36 (MQ=255)
gatgatCGCGATATTGCGTTGACACAAGGGGAAGtt > 1:4715803/1‑36 (MQ=255)
gatgatCGCGATATTGCGTTGACACAAGGGGAAGtt < 1:5620136/36‑1 (MQ=255)
atgatCGCGATATTGCGTTGACACAAGGGGAAGTTa > 1:6789819/1‑36 (MQ=255)
atgatCGCGATATTGCGTTGACACAAGGGGAAGTTa > 1:748216/1‑36 (MQ=255)
tgatCGCGATATTGCGTTGACACAAGGGGAAGTTaa < 1:1315035/36‑1 (MQ=255)
tgatCGCGATATTGCGTTGACACAAGGGGAAGTTaa < 1:849349/36‑1 (MQ=255)
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CCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAA > REL606/2134157‑2134223
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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