New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1946059 =37 (0.720)5 (0.100) 4/60 NT 11.5% coding (149/390 nt) cheY chemotaxis regulator transmitting signal to flagellar motor component
?REL606 = 3240660 40 (0.670)coding (392/1245 nt) mtr tryptophan transporter of high affinity

ACCACAAACGCTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTGCCGGGACGTTTAGCGACATCTC  >  REL606/3240627‑3240694
                                 |                                  
accacAAACGCTACCAGCAGTGCAAAACCAAAACcc                                  <  1:83551‑M2/36‑3 (MQ=255)
accacAAACGCTACCAGCAGTGCAAAACCAAAACcc                                  <  1:5861371‑M2/36‑3 (MQ=255)
 ccacAAACGCTACCAGCAGTGCAAAACCAAAACccg                                 <  1:4245601‑M2/36‑4 (MQ=255)
  cacaAACGCTACCAGCAGTGCAAAACCAAAACccgc                                <  1:4935313‑M2/36‑5 (MQ=255)
  cacaAACGCTACCAGCAGTGCAAAACCAAAACccgc                                >  1:7663078‑M2/1‑32 (MQ=255)
  cacaAACGCTACCAGCAGTGCAAAACCAAAACccgc                                <  1:729355‑M2/36‑5 (MQ=255)
   acaAACGCTACCAGCAGTGCAAAACCAAAACccgcc                               >  1:6227802‑M2/1‑31 (MQ=255)
   acaAACGCTACCAGCAGTGCAAAACCAAAACccgcc                               >  1:7837913‑M2/1‑31 (MQ=255)
   acaAACGCTACCAGCAGTGCAAAACCAAAACccgcc                               <  1:3245079‑M2/36‑6 (MQ=255)
   acaAACGCTACCAGCAGTGAAAAACCAAAACccacc                               >  1:2761846/1‑36 (MQ=37)
    caAACGCTACCAGCAGTGCAAAACCAAAACccgccg                              <  1:7625221/36‑1 (MQ=255)
    caAACGCTACCAGCAGTGCAAAACCAAAACccgccg                              >  1:7090038/1‑36 (MQ=255)
     aaaCGCTACCAGCAGTGCAAAACCAAAACCcgccgc                             >  1:1827372/1‑36 (MQ=255)
      aaCGCTACCAGCAGTGCAAAACCAAAACCCgccgcc                            >  1:2691760/1‑36 (MQ=255)
      aaCGCTACCAGCAGTGCAAAACCAAAACCCgccgcc                            <  1:387650/36‑1 (MQ=255)
      aaCGCTACAAGCAGTGCAAAACCAAAACCCgccgcc                            <  1:2019892/36‑1 (MQ=255)
       aCGCTACCAGCAGTGCAAAACCAAAACCCGCCGccc                           >  1:1988749/1‑36 (MQ=255)
        cGCTACCAGCAGTGCAAAACCAAAACCCGCCGCCCg                          >  1:4190047/1‑36 (MQ=255)
        cGCTACCAGCAGTGCAAAACCAAAACCCGCCGCCCg                          >  1:4023487/1‑36 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCggg                        >  1:2596589/1‑34 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTg                        <  1:5940413/36‑1 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTg                        >  1:5436873/1‑36 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTg                        <  1:4340554/36‑1 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTg                        <  1:425446/36‑1 (MQ=255)
          cTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTg                        <  1:3693230/36‑1 (MQ=255)
            aCCAGCAGTGCAAAACCAAAACCCGCCGCCCGTGcc                      >  1:1272214/1‑36 (MQ=255)
              cagcagTGCAAAACCAAAACCCGCCGCCCGTGCCgg                    <  1:804267/36‑1 (MQ=255)
               agcagTGCAAAACCAAAACCCGCCGCCCGTGCCggg                   >  1:7176970/1‑36 (MQ=255)
                   gTGCAAAACCAAAACCCGCCGCCCGTGCCGGGACGt               >  1:5893557/1‑36 (MQ=255)
                    tGCAAAACCAAAACCCGCCGCCCGTGCCGGGACGtt              <  1:5533949/36‑1 (MQ=255)
                      aaaaaccaaaaccCGCCGCCCGTGCCGGGACGTTTa            <  1:2745009/35‑1 (MQ=255)
                       aaaaccaaaaaccgcctgcctgcaacttattgagag           >  1:3930422‑M2/1‑11 (MQ=255)
                       aaaaccaaaaaccgcctgcctgcaacttattgagag           >  1:938316‑M2/1‑11 (MQ=255)
                        aaaccaaaacccgcctgcctgcaacttattgagagc          >  1:2937989‑M2/1‑10 (MQ=255)
                        aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGc          <  1:1149274/36‑1 (MQ=255)
                        aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGc          <  1:4311333/36‑1 (MQ=255)
                        aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGc          <  1:3985185/36‑1 (MQ=255)
                        aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGc          >  1:1743411/1‑36 (MQ=255)
                        aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGc          >  1:6035191/1‑36 (MQ=255)
                         aaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGCg         >  1:590341/1‑36 (MQ=255)
                          accaaaacccgcctgcctgcaacttattgagagcgt        >  1:3165523‑M2/1‑8 (MQ=255)
                          accaaaaccCGCCGCCCGTGCCGGGACGTTTAGCGa        >  1:3956808/1‑36 (MQ=255)
                           ccaaatccCGCCGCCCGTGCCGGGACGTTTAGCGAc       <  1:4908552/36‑1 (MQ=255)
                            caaaaccCGCCGCCCGTGCCGGGACGTTTAGCGACa      >  1:5930390/1‑36 (MQ=255)
                            caaaaccCGCCGCCCGTGCCGGGACGTTTAGCGACa      <  1:339752/36‑1 (MQ=255)
                            caaaaccCGCCGCCCGTGCCGGGACGTTTAGAGACa      >  1:5274511/1‑36 (MQ=255)
                              aaacccgcctgcctgcaacttattgagagcgtcgac    >  1:989506‑M2/1‑4 (MQ=255)
                              aaaccCGCCGCCCGTGCCGGGACGTTTAGCGACAtc    >  1:522001/1‑36 (MQ=255)
                               aaccCGCCGCCCGTGCCGGGACGTTTAGCGACAtct   >  1:6776370/1‑36 (MQ=255)
                                accCGCCGCCCGTGCCGGGACGTTTAGCGACAtctc  <  1:178793/36‑1 (MQ=255)
                                accCGCCGCCCGTGCCGGGACGTTTAGCGACAtctc  >  1:1749652/1‑36 (MQ=255)
                                accCGCCGCCCGTGCCAGGACGCTTAGGGAGAtatc  >  1:5553528/1‑36 (MQ=16)
                                accCGCCGCCCGCGCCGGGACGTTTAGCGACAtctc  >  1:3162273/1‑36 (MQ=255)
                                accCCCCGCCCGTGCCGGGACGTTTAGCGACAtctc  <  1:1079592/36‑1 (MQ=255)
                                 |                                  
ACCACAAACGCTACCAGCAGTGCAAAACCAAAACCCGCCGCCCGTGCCGGGACGTTTAGCGACATCTC  >  REL606/3240627‑3240694

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG