Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 874,932 | +G | 7.7% | coding (355/759 nt) | deoR ← | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 874,932 | 1 | .→G | 7.7% | 3.7 ‑0.7 ‑0.4 | 26 | coding (355/759 nt) | deoR | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (14/10): total (16/10) | ||||||||||
Fisher's exact test strand distribution p-value = 5.08e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.97e-01 |
CAGCGCCAGAAAGGTATTTAGCGAATAACAAACGGC.GGTAAAAGGGATTTCATTATCAATCGCTTCAATAA > REL606/874897‑874967
|
cAGCGCCAGAAAGGTATTTAGCGAATAACAAAcggc < 1:2307710/36‑1 (MQ=255)
aGCGCCAGAAAGGTATTTAGCGAATAACAAAcggc.g > 1:5550710/1‑36 (MQ=255)
aGCGCCAGAAAGGTATTTAGCGAATAACAAAcggc.g < 1:1612225/36‑1 (MQ=255)
cgcCAGAAAGGTATTTAGCGAATAACAAACGGC.GGt > 1:5405841/1‑36 (MQ=255)
gcCAGAAAGGTATTTAGCGAATAACAAAcggc.ggga > 1:1808727/1‑34 (MQ=255)
gcCAGAAAGGTATTTAGCGAATAACAAACGGC.GGTa < 1:5673198/36‑1 (MQ=255)
gcCAGAAAGGTATTTAGCGAATAACAAACGGC.GGTa > 1:2298649/1‑36 (MQ=255)
aaaGGTATTTAGCGAATAACAAACGGC.GGTgaaaag > 1:1713794/1‑34 (MQ=37)
aaGGTATTTAGCGAATAACAAACGGCGGGTAAAAgg > 1:23310/1‑36 (MQ=37)
ggTATTTAGCGAATAACAAACGGC.GGGAAAAAGGag > 1:2968639/1‑35 (MQ=25)
gTATTTAGCGAATAACAAACGGC.GGAAAAAaggggt > 1:2305770/1‑33 (MQ=25)
aTTTAGCGAATAACAAACGGCGGGCAAAAGGGTttt > 1:2512062/1‑36 (MQ=19)
aTTTAGCGAATAACAAACGGC.GGTAAAAGGGATTTc < 1:3922690/36‑1 (MQ=255)
aTTTAGCGAATAACAAACGGC.GGTAAAAAGGGTTTc > 1:2509085/1‑36 (MQ=37)
aTTTAGCGAATAACAAACGGC.GGGAAAAAGGGttta > 1:862602/1‑35 (MQ=21)
ttAGCGAATAACAAACGGC.GGTAAAAAGGATTTTAt > 1:4732601/1‑36 (MQ=37)
aGCGAATAACAAACGGC.GGGAAAAAGGGTTTCCTTa > 1:4455960/1‑36 (MQ=16)
gAATAACAAACGGC.GGCAAAAAGGGTTTTACTAttt > 1:3284689/1‑34 (MQ=12)
aaTAACAAACGGC.GGGAAAAAGGGTTTTACTATCaa > 1:789944/1‑36 (MQ=12)
aaTAACAAACGGC.GGAAAAAAGGATTTCGTTATCaa > 1:656975/1‑36 (MQ=25)
aTAACAAACGGC.GGTAAAAGGGATTTCATTATCAAt < 1:1032470/36‑1 (MQ=255)
aTAACAAACGGC.GGTAAAAGGGATTTCATTATCAAt < 1:5888580/36‑1 (MQ=255)
aTAACAAACGGC.GGTAAAAGGGATTTCATTATCAAt < 1:4545974/36‑1 (MQ=255)
tAACAAACGGC.GGTAAAAGGGATTTCATTATCAATc < 1:4982687/36‑1 (MQ=255)
tAACAAACGGC.GGTAAAAGGGATTTCATTATCAATc < 1:1862772/36‑1 (MQ=255)
tAACAAACGGC.GGTAAAAGGGATTTCATTATCAATc < 1:3319823/36‑1 (MQ=255)
aaCAAACGGC.GGTAAAAAGGGTTTTATTATCaaaac > 1:2699963/1‑33 (MQ=16)
aaCAAACGGC.GGCAAAAGGGATCTCATTATCaaacc > 1:346929/1‑33 (MQ=25)
aCGGC.GGTAAAAGGGATTTCTTTATCAATCGCTTCa < 1:3273037/36‑1 (MQ=255)
aCGGC.GGTAAAAGGGATTTCATTATCAATCGCTTCa < 1:2725810/36‑1 (MQ=255)
ggc.ggTAAAAGGGATTTCATTATCAATCGCTTCaat < 1:1492507/36‑1 (MQ=255)
ggc.ggTAAAAGGGATTTCATTATCAATCGCTTCaat < 1:5856816/36‑1 (MQ=255)
gc.ggTAAAAGGTATTTCATTATCAATCGCTTCaata < 1:4186121/36‑1 (MQ=255)
gc.ggTAAAAGGGGTTTCATTTTCAATCGCTTCaata > 1:12978/1‑36 (MQ=25)
c.ggTAAAAGGGATTTCATTATCAATCGCTTCaataa < 1:5822279/36‑1 (MQ=255)
|
CAGCGCCAGAAAGGTATTTAGCGAATAACAAACGGC.GGTAAAAGGGATTTCATTATCAATCGCTTCAATAA > REL606/874897‑874967
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|