Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,045,956 | C→A | 26.9% | L16F (TTG→TTT) | yghJ ← | predicted inner membrane lipoprotein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,045,956 | 0 | C→A | 26.9% | 10.3 ‑4.4 0.0 | 40 | 48 | yghJ | predicted inner membrane lipoprotein |
Reads supporting (aligned to +/- strand): new base (1/11): ref base (15/13): total (16/24) | ||||||||||
Fisher's exact test strand distribution p-value = 1.22e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAA > REL606/3045921‑3045991
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ccACCGCCATCACAACCGGCTAACAGGGTTGCGCTc < 1:4569869/36‑1 (MQ=255)
cACCGCCATCACAACCGGCTAACAGGGTTGCGCTCa < 1:6496342/36‑1 (MQ=255)
aCCGCCATCACAACCGGCTAACAGGGTTGCGCTCaa < 1:6997763/36‑1 (MQ=255)
aCCGCCATCACAACCGGCTAACAGGGTTGCGCTCaa > 1:4617794/1‑36 (MQ=255)
aCCGCCATCACAACCGGCTAACAGGGTTGCGCTCaa > 1:6150249/1‑36 (MQ=255)
cGCCATCACACCCGGCTAACAGGGTTGCGCTCaaaa < 1:709268/36‑1 (MQ=255)
cGCCATCACAACCGGCTAACAGGGTTGCGCTCaaaa < 1:6654749/36‑1 (MQ=255)
gCCATCACAACCGGCTACCAGGGTTGCGCTCAAAAt < 1:2488313/36‑1 (MQ=255)
gCCATCACAACCGGCTAACAGGGTTGCGCTCAAAAt > 1:7747281/1‑36 (MQ=255)
gCCATCACAACCGGCTAACAGGGTTGCGCTCAAAAt > 1:534311/1‑36 (MQ=255)
gCCATCACAACCGGCTAACAGGGTTGCGCTCAAAAt < 1:1584275/36‑1 (MQ=255)
aTCACACCCGGCTAACATGGTTGCGCTCAAAATAGc < 1:6549989/36‑1 (MQ=38)
aTCACAACCGGCTAACAGGGTTGCGCTCAAAATAGc > 1:5864537/1‑36 (MQ=255)
aTCACAACCGGCTAACAGGGTTGCGCTCAAAATAGc < 1:5405109/36‑1 (MQ=255)
aTCACAACCGGCTAACAGGGTTGCGCTCAAAATAGc > 1:4195072/1‑36 (MQ=255)
tcgcaACCGGCTAACAGGGTTGCGCTCAAAATAGcc < 1:4070896/33‑1 (MQ=255)
cacaACCGGCTAACAGGGTTGCGCTCAAAATAGCCg < 1:6927365/36‑1 (MQ=255)
cacaACCGGCTAACAGGGTTGCGCTCAAAATAGCCg > 1:6340359/1‑36 (MQ=255)
aCCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaa > 1:3798461/1‑36 (MQ=255)
ccGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaaa < 1:6078116/36‑1 (MQ=255)
ccGGCTAACAGGGTTGCGCTCAAAATAGCCGCTaaa > 1:6502202/1‑36 (MQ=255)
cGGCTAACAGGGTTGCGCTAAAAATAGCCGCTaaaa < 1:2904003/36‑1 (MQ=255)
ggCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAg > 1:1860470/1‑36 (MQ=255)
ggCAAAAAGGTTTGCGATAAAAATAGCCGCTAAAAg < 1:3687282/36‑1 (MQ=12)
gcaaaCAGGTTTCCCCTAAAATTAGCCGCTAAAAGc < 1:2159587/33‑1 (MQ=12)
gCTAACAGGGTTGCGCTAAAAATAGCCGCTAAAAGc < 1:2260343/36‑1 (MQ=255)
caaaCAGGTTTGCGATAAAAATAGCCGCTAAAAGCg < 1:2291001/34‑1 (MQ=21)
cTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCg > 1:3365858/1‑36 (MQ=255)
tAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGa > 1:2891453/1‑36 (MQ=255)
aCAGGGTTGAACAAAAAATAGCCGCTAAAAGCGAtt < 1:1438164/36‑1 (MQ=16)
cggggTTGCGATAAAAATAGCCGCTAAAAGCGAttt < 1:3233007/34‑1 (MQ=25)
cAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGAttt > 1:6738629/1‑36 (MQ=255)
cAGGGTTGCGCTAAAAATAGCCGCTAAAAGCGAttt > 1:6675429/1‑36 (MQ=255)
gggTTGCGCTAAAAATAGCCGCTAAAAGCGATTTCt < 1:7809724/36‑1 (MQ=255)
ggTTGCGATAAAAATAGCCGCTAAAAGCGATTTCtt < 1:5796623/36‑1 (MQ=37)
ggTGGCGCAAAAAATAGCCGCTAAAAGCGATTTCtt < 1:3247526/36‑1 (MQ=25)
tttGCGCTCAAAATAGCCGCTAAAAGCGATTTCTta < 1:5095413/35‑1 (MQ=255)
gTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTta > 1:531022/1‑36 (MQ=255)
ttGCGCTAAAAATAGCCGCTAAAAGCGATTTCTtat < 1:6287049/36‑1 (MQ=255)
tGCGCTCAAAATAGCCGCTAAAAGCGATTTCTtata > 1:259077/1‑36 (MQ=255)
ccTCAAAATAGCCGCTAAAAGCGATTTCTTATAttt < 1:2694367/35‑1 (MQ=255)
cAAAATAGCCGCTAAAAGCGATTTCTTATATTTaaa > 1:5683821/1‑36 (MQ=255)
cAAAATAGCCGCTAAAAGCGATTTCTTATATTTaaa > 1:4825900/1‑36 (MQ=255)
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CCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAA > REL606/3045921‑3045991
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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