Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,856,083 G→T 29.7% intergenic (+114/+153) yeaP → / ← yeaQ predicted diguanylate cyclase/conserved inner membrane protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,856,0830G→T29.7% 4.2 ‑0.5 ‑0.020intergenic (+114/+153)yeaP/yeaQpredicted diguanylate cyclase/conserved inner membrane protein
Reads supporting (aligned to +/- strand):  new base (5/1):  ref base (9/5):  total (14/6)
Fisher's exact test strand distribution p-value = 6.13e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.58e-01

TCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGA  >  REL606/1856048‑1856118
                                    |                                   
tCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TAtg                                     <  1:4969433/36‑1 (MQ=255)
  gTATTTTTAGCATGGTTTTTTATTGGCGGC.TAtgct                                   <  1:3991805/36‑1 (MQ=255)
    aTTTTTAGCATGGTTTTTTATTGGCGGC.TAtgctgc                                 <  1:911565/36‑1 (MQ=255)
      ttttAGCATGGTTTTTTATTGGCGGG.TATTCTTccc                               >  1:1722787/1‑36 (MQ=25)
           gCATGGTTTTTTATTGTCGGC.TATGCTGCCCCGGGa                          <  1:7613440/36‑1 (MQ=255)
            cATGGTTTTTTATTGGCGGC.TATTTTTCCCCggggg                         >  1:944223/1‑34 (MQ=21)
            cATGGTTTTTTATTGAGGGC.TATTCTGCCCCGGGAg                         <  1:44918/36‑1 (MQ=25)
             aTGGTTTTTTATTGGCGGG.TATTTTGCCCCgggggg                        >  1:6935900/1‑33 (MQ=16)
             aTGGTTTTTTATTGGCGGC.TTTTCTTCCCCcggggg                        >  1:5806240/1‑33 (MQ=16)
              tGGTTTTTTATTGGCGGCTTTTGTTGCCCCGGGGGc                        >  1:406998/1‑36 (MQ=16)
              tGGTTTTTTATTGGCGGC.TATTCTTCCCCGGGGGcc                       >  1:192826/1‑35 (MQ=25)
                  tttttATTGGCGGC.TATGCTGCCCCGGGAGCATaaa                   <  1:2273180/36‑1 (MQ=255)
                   ttttATTGGCGGC.TATGCTGCCCCGGGAGCATAAAg                  <  1:69512/36‑1 (MQ=255)
                         tGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGaaa            >  1:7851585/1‑36 (MQ=255)
                         tGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGaaa            >  1:1098277/1‑36 (MQ=255)
                          ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa           >  1:398361/1‑36 (MQ=255)
                          ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa           <  1:6916277/36‑1 (MQ=255)
                          ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa           >  1:2726620/1‑36 (MQ=255)
                             ggc.TATGCTGCCCCGGGAGCATAAAGATGaaaaaaa        >  1:314873/1‑36 (MQ=255)
                              gc.TATGCTGCCCCGGGAGCATAAAGATGAAAAAaac       <  1:4422011/36‑1 (MQ=255)
                              gc.TATGCTGCCCCGGGAGCATAAAGATGAAAAAaac       >  1:6733799/1‑36 (MQ=255)
                                 tATGCTGCCCCGGGAGCATAAAGATGAAAAAaacaa     >  1:1942961/1‑36 (MQ=255)
                                 tATGCTGCCCCGGGAGCATAAAGATGAAAAAaacaa     >  1:1494457/1‑36 (MQ=255)
                                    gctgcCCCGGGAGCATAAAGATGAAAAAAACAACGa  >  1:2487621/1‑36 (MQ=255)
                                    |                                   
TCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGA  >  REL606/1856048‑1856118

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 16 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG