Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606429,5480C→A100.0% ‑0.1 1intergenic (+143/+127)clpX/insL‑2ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

TAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG  >  REL606/429518‑429553
                              |     
tAAGGGTTGAACCATCTGAAGAATGCGACGAATCgg  >  1:3085773/1‑36 (MQ=1)
                              |     
TAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG  >  REL606/429518‑429553

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 35 ≤  ATCG