Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,524,719 | T→A | 7.7% | S37T (TCC→ACC) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,524,719 | 0 | T→A | 7.7% | 3.2 ‑1.4 ‑0.7 | 39 | 109 | fdnH | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (18/18): total (21/18) | ||||||||||
Fisher's exact test strand distribution p-value = 2.35e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.14e-01 |
ATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTAAAGCCTGTCAGGTGGC > REL606/1524684‑1524753
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aTTACAAAGCAGAAGTCGCAAAACTTATCGACGttt > 1:1255434/1‑36 (MQ=255)
aTTACAAAGCAGAAGTCGCAAAACTTATCGACGttt > 1:5909200/1‑36 (MQ=255)
aTTACAAAGCAGAAGACGAAAAACTTATCGACGttt > 1:4886220/1‑36 (MQ=37)
tACAAAGCAGAAGTCGCCAACCTTATCGACGTTTcc < 1:2049748/36‑1 (MQ=37)
tACAAAGCAGAAGTCGCAAAACTTATCGACGTTTcc > 1:142274/1‑36 (MQ=255)
tACAAAGCAGAAGTCGCAAAACTTATCGACGTTTcc < 1:1871251/36‑1 (MQ=255)
tACAAAGCAGAAGTCGCAAAACTTATCGACGTTTcc > 1:2932206/1‑36 (MQ=255)
aaaaGCAGAAGTCGCAAAACTTATCGACGTTTCCAc < 1:3667840/35‑1 (MQ=255)
aaaGCAGAAGTCGCAAAACTTATCGACGTTTCCAcc > 1:1085443/1‑36 (MQ=255)
aaaGCAGAAGTCGCAAAACTTATCGACGTTTCCAcc > 1:3311025/1‑36 (MQ=255)
aaaGCAGAAGTCGCAAAACTTATCGACGTTTACAcc > 1:5293043/1‑36 (MQ=255)
cAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTa > 1:4023379/1‑36 (MQ=255)
acaaGTCGTAAAACTTATCGACTTTTCCACCTGTAt < 1:3389289/34‑1 (MQ=21)
aGAAGTCGCAAAACTTATCGACGTTTCCACCTGTAt < 1:1352526/36‑1 (MQ=255)
aGAAGTCGCAAAACTTATCGACGTTTCCACCTGTAt > 1:3301878/1‑36 (MQ=255)
gAAGTCGCAAAACTTATCGACGTTTCCACCTGTATc < 1:3984765/36‑1 (MQ=255)
gAAGTCGCAAAACTTATCGACGTTTCCACCTGTATc > 1:3166514/1‑36 (MQ=255)
gAAGTCGCAAAAATTATCGACGTTTCCACCTGTATc > 1:4787509/1‑36 (MQ=255)
aGTCGCAAAACTTATCGACGTTTCCACCTGTATCgg > 1:3178719/1‑36 (MQ=255)
tCGCAAAACTTATCGACGTTTCCACCTGTATCGGCt < 1:5599756/36‑1 (MQ=255)
gCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt < 1:5717456/36‑1 (MQ=255)
gCAAAACTTATCGACGTTTCCACCGGTATCGGCTgg > 1:112182/1‑35 (MQ=255)
cAAAACTTATCGACGTTTCCACCTGTATCGGCTGTa < 1:1415941/36‑1 (MQ=255)
aaaaCTTATCGACGTTTCCACCTGTATCGGCTGTaa < 1:3708440/36‑1 (MQ=255)
aaaaCTTATCGACGTTTCCACATGTATCGGCTggta > 1:3496344/1‑33 (MQ=18)
aaaCTTCTCGACGTTTCCACCTGTATCGGCTGTaaa < 1:2657801/36‑1 (MQ=255)
cTTATCGACGTTTCCACCTGTATCGGCTGTAAAGcc < 1:1316090/36‑1 (MQ=255)
ttATCGACGTTTCCACCTGTATCGGCTGTAAAGccc > 1:1067450/1‑35 (MQ=255)
ttATCGACGTTTCCACCTGTATCGGCTGTAAAGCCt < 1:4229451/36‑1 (MQ=255)
ttATCGACGTTTCCACCTGTATCGGCTGTAAAGCCt < 1:4896877/36‑1 (MQ=255)
aTCGACGTTTCCACCTGTATCGGCTGTAAAGCCTGt < 1:5277361/36‑1 (MQ=38)
tCGACGTTTCCACCTGTATCGGCTGTAAAAACTGtt > 1:5575386/1‑35 (MQ=14)
tCGACGTTACCACCTGTATCGGCTGTAAAGTCtttt > 1:5513135/1‑33 (MQ=14)
gACGTTTCCACCTGTATCGGCTGTAAAGCCTGTCAg < 1:1729964/36‑1 (MQ=38)
gACGTTTCCACCTGTATCGGCTGGAAAGCCTGttcg > 1:3477074/1‑33 (MQ=14)
gACGTTTACACCTGTATCGGCTGTAAAGACCGTccg > 1:854135/1‑34 (MQ=14)
aCGTTTCCACCTGTATCGGCTGTAAAGCCTGTCAgg < 1:2152838/36‑1 (MQ=38)
aCGTTTCCACCTGTATCGGCTGTAAAGCCTGTCAgg > 1:199685/1‑36 (MQ=38)
aCGTTTCCACCTGTATCGGCTGTAAAACCCTTCAgg > 1:5610717/1‑36 (MQ=14)
aCGTTACCACCTGTATCGGCTGGAAAGCCTTTCCgg > 1:4435820/1‑36 (MQ=14)
cGTTTCAATCTGTGTCGGCTGCAAAGCCTGTCAGGt < 1:470729/36‑1 (MQ=9)
gTTACCACCTGTATCGGCTGTAAAACCTGTTATGTg > 1:2494692/1‑36 (MQ=14)
ttCCACCTGTATCGGCTGTAAAGCCTGTCAGGTGGc < 1:3576464/36‑1 (MQ=35)
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ATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTAAAGCCTGTCAGGTGGC > REL606/1524684‑1524753
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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