Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 876,898 | C→G | 23.5% | A225G (GCG→GGG) | cmr → | multidrug efflux system protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 876,898 | 0 | C→G | 23.5% | 2.9 ‑2.3 ‑0.1 | 17 | 674 | cmr | multidrug efflux system protein |
Reads supporting (aligned to +/- strand): new base (3/1): ref base (3/10): total (6/11) | ||||||||||
Fisher's exact test strand distribution p-value = 9.87e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.65e-01 |
GCTGGTGCTGAAGAACGGCCGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTCGTTAGTCTGCCGTTGCTGG > REL606/876863‑876933
|
gCTAGTGCTTAAGAACGGCCGCTTTGTGGCGGGggc < 1:1362239/36‑1 (MQ=37)
tGGTGCTGAAGACCGGCCGCTTTGTGGCGGGggcgc < 1:6434282/36‑1 (MQ=255)
tGGTGCTGAAGAACGGCCGCTTTGTGGCGGGggcgc < 1:7610876/36‑1 (MQ=255)
gggTGCTGAAGAACGGCCGCTTTGTGGCGGGggcgc < 1:2934162/35‑1 (MQ=255)
ggTGCTGAAGAACGGCCGCTTTGTGGCGGGggcgct < 1:247450/36‑1 (MQ=255)
tGCTGAAGAACGGCCGCTTTGTGGCGGGggcgctgg < 1:6287095/36‑1 (MQ=255)
tGCTGAAGAACGGCCGCTTTGTGGCGGGggcgctgg < 1:4130012/36‑1 (MQ=255)
gCTGAAGAACGGCGGCTTTGTGGCGGGggcgctggc < 1:7609655/36‑1 (MQ=255)
gaagaaCGGCCGCTTTGTGGCGGGggcgctggcgct < 1:940639/36‑1 (MQ=255)
gaagaaCGGCCGCTTTGTGGCGGGggcgctggcgct < 1:7149862/36‑1 (MQ=255)
agaaCGGCCGCTTTGTGGCGGGGGggcgggggcggg > 1:264217/1‑36 (MQ=19)
gaaCGGCCGCTTTGTGGCGGGGGCGCTGGCGCTggg < 1:2850743/36‑1 (MQ=255)
aaCGGCCGCTTTGTGGCGGGGGGGTTGTTGCTgggg > 1:6136197/1‑35 (MQ=12)
aCGGCCGCTTTGTGGCGGGGGGGGTGGCGGTggggg > 1:3574705/1‑34 (MQ=21)
ggCCGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTc < 1:5823950/36‑1 (MQ=255)
gCCGCTTTGTGGCGGGGGCGCTTGGGCTTGGGtttg > 1:1703938/1‑34 (MQ=16)
gCCGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTCg < 1:5681225/36‑1 (MQ=255)
ccGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTCGt < 1:3292755/36‑1 (MQ=255)
ccGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTCGt < 1:1744389/36‑1 (MQ=255)
cTTTGTGGCGGGGGCGCTGGCGCTGGGATTCGTTAg < 1:2488428/36‑1 (MQ=255)
tttGTGGCGGGGGCGCTGGCGCTGGGATTCGTTAGt < 1:4586683/36‑1 (MQ=255)
ttGTGGCGGGGGGGGTGGCGGTGGGGTTTGTTTGtt > 1:6439308/1‑35 (MQ=2)
ttGTGGCGGGGGCGCTGGCGCTGGGATTCGTTAGTc < 1:3876202/36‑1 (MQ=255)
tgGCGGGGGCGCTGGCGCTGGGATTCGTTAGTCTGc < 1:5463690/36‑1 (MQ=255)
tgGCGGGGGCGCTGGCGCTGGGATTCGTTAGTCTGc > 1:4169678/1‑36 (MQ=255)
gggCGGGGGGCCTTTCGCTGGGATTCGTTAGTCTGc < 1:7683928/35‑1 (MQ=19)
ggCGGGGGCGCTGGCGCTGGGATTCGTTAGTCTGcc > 1:442966/1‑36 (MQ=255)
gggggCGCTGGCGCTGGGATTCGTTAGTCTGCCGtt < 1:8328807/36‑1 (MQ=255)
ggcgctggcgctGGGATTCGTTAGTCTGCCGTTGCt < 1:1579143/36‑1 (MQ=255)
ggcgctggcgctGGGATTCGTTAGTCTGCCGTTGCt < 1:4786031/36‑1 (MQ=255)
gcgctggcgctgGGATTCGTTAGTCTGCCGTTGCTg > 1:8182930/1‑36 (MQ=255)
cgctggcgctggGATTCGTTAGTCTTCCGTTGCTgt > 1:6351308/1‑35 (MQ=255)
cgctggcgctggGATTCGTTAGTCTGCCGTTGCTgg > 1:718930/1‑36 (MQ=255)
cgctggcgctggGATTCGTTAGTCTGCCGTTGCTgg < 1:7141372/36‑1 (MQ=255)
|
GCTGGTGCTGAAGAACGGCCGCTTTGTGGCGGGGGCGCTGGCGCTGGGATTCGTTAGTCTGCCGTTGCTGG > REL606/876863‑876933
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|