Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,134,710 | G→T | 9.9% | intergenic (‑2/‑152) | argE ← / → argC | acetylornithine deacetylase/N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,134,710 | 0 | G→T | 9.9% | 2.4 ‑3.0 0.0 | 47 | intergenic (‑2/‑152) | argE/argC | acetylornithine deacetylase/N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (19/23): total (24/23) | ||||||||||
Fisher's exact test strand distribution p-value = 4.96e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTC > REL606/4134678‑4134745
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tctcGATAAATGGCGGTAATTTTTTTTTTAtttttt > 1:1725145/1‑35 (MQ=25)
ctcGATAAATGGCGGTAATTTTTTTTTTAttttttt > 1:6784037/1‑34 (MQ=21)
ctcGATAAATGGCGGAAATTTTTTTTTTAtttttta > 1:8467592/1‑34 (MQ=16)
tcGATAAATGGCGGTAATTTGTTTTTCATTGTTGac < 1:767350/36‑1 (MQ=255)
cGATAAATGGCGGTAAATTTTTTTTTATTTTTTact > 1:5328125/1‑35 (MQ=12)
gATAAATGGCGGTTATTTTTTTTTTATTTTTGtcac > 1:5369576/1‑36 (MQ=12)
aTAAATGGCGGTAATTTTTTTTTTATTTTTTacacc > 1:181735/1‑35 (MQ=16)
aTAAATGGCGGTAATTTGTTTTTCATTGTTGacaca < 1:1698205/36‑1 (MQ=255)
aTAAATGGCGGTAATTTGTTTTTCATTGTTGacaca < 1:3835993/36‑1 (MQ=255)
aTAAATGGCGGTAATGTGTTTTTCATTGTTGacaca < 1:4365779/36‑1 (MQ=255)
aaaTGGCGGTAATTTGTTTTTCATTTTTTACACAcc > 1:928654/1‑36 (MQ=37)
aaTGGCGGTAATTTGTTTTTCATTGTTGACACACct < 1:7831439/36‑1 (MQ=255)
tGGCGGTAATTTGTTTTTCATTTTTTACACACctct > 1:463945/1‑36 (MQ=37)
tGGCGGTAATTTGTTTTTCATTGTTGACACACctct < 1:5527472/36‑1 (MQ=255)
gCGGTAATTTGTTTTTCATTGTTGACACACCTCTgg > 1:1173207/1‑36 (MQ=255)
cGGTAATTTGTTTTTCATTGTTGACACACCTCTGGt < 1:4660921/36‑1 (MQ=255)
cGGTAATTTGTTTTTCATTGTTGACACACCTCTGGt < 1:3270255/36‑1 (MQ=255)
cGGTAATTTGTTTTTCATTGTTGACACACCTCTGGt < 1:6550783/36‑1 (MQ=255)
ggTAATTTGTTTTTCATTGTTGACACACCTCTGGTc > 1:7170098/1‑36 (MQ=255)
gTAATTTGTTTTTCATTGTTGACACACCTCTGGTCa < 1:7025044/36‑1 (MQ=255)
gTAATTTGTTTTTCATTGTTGACACACCTCTGGTCa > 1:7834653/1‑36 (MQ=255)
tAATTTGTTTTTCATTGTTGACACACCTCTGGTCag < 1:1636187/36‑2 (MQ=255)
tAATTTGTTTTTCATTGTTGACACACCTCTGGTCAt < 1:6893426/36‑1 (MQ=255)
aaTTTGTTTTTCATTGTTGACACACCTCTGGTCATg < 1:3847555/36‑1 (MQ=255)
aTTTGTTTTTCATTGTTGACACACCTCTGGTCATGa > 1:1920124/1‑36 (MQ=255)
aTTTGTTTTTCATTGTTGACACACCTCTGGTCATGa < 1:4277345/36‑1 (MQ=255)
aTTTGTTTTTCATTGTTGACACACCTCTGGTCATGa < 1:3489747/36‑1 (MQ=255)
aTTTGTTTTTCATTGTTGACACACCTCTGGTCATGa < 1:2498993/36‑1 (MQ=255)
tttGTTTTTCATTGTTGACACACCTCTGGTCATGAt > 1:6310432/1‑36 (MQ=255)
tttGTTTTTCATTGTTGACACACCTCTGGTCATGAt < 1:3631689/36‑1 (MQ=255)
tttGTTTTTCATTGTTGACACACCTCTGGTCATGAt < 1:4928206/36‑1 (MQ=255)
tttGTTTTTCATTGTTGACACACCTCTGGTCATGAt > 1:4973072/1‑36 (MQ=255)
ttGTTTTTCATTGTTGACACACCTCTGGTCATGATa < 1:5748424/36‑1 (MQ=255)
ttGTTTTTCATTGTTGACACACCTCTGGTCATGATa > 1:457234/1‑36 (MQ=255)
tttttCATTGTTGACACACCTCTGGTCATGATAGTa > 1:7111922/1‑36 (MQ=255)
tttttCATTGTTGACACACCTCTGGTCATGATAGTa > 1:1119300/1‑36 (MQ=255)
tttttCATTGTTGACACACCTCTGGTCATGATAGTa < 1:2316729/36‑1 (MQ=255)
tttttCATTGTTGACACACCTCTGGTCATGATAGTa > 1:3391724/1‑36 (MQ=255)
tttttCATTGTTGACACACCTCTGGTCATGATAGTa > 1:464535/1‑36 (MQ=255)
ttttCATTGTTGACACACCTCTGGTCATGATAGTAt > 1:1532469/1‑36 (MQ=255)
ttttCATTGTTGACACACCTCTGGTCATGATAGTAt > 1:2910227/1‑36 (MQ=255)
tttCATTGTTGACACACCTCTGGTCATGATAGTATc < 1:3233408/36‑1 (MQ=255)
tttCATTGTTGACACACCTCTGGTCATGATAGTATc < 1:2190104/36‑1 (MQ=255)
ttCATTGTTGACACACCTCTGGTCATGATAGTATCa > 1:213317/1‑36 (MQ=255)
tCATTGTTGACACACCTCTGGTCATGATAGTATCaa > 1:2481805/1‑36 (MQ=255)
cATTGTTGACACACCTCTGGTCATGATAGTATCAat > 1:3487535/1‑36 (MQ=255)
cATTGTTGACACACCTCTGGTCATGATAGTATCAat > 1:7644261/1‑36 (MQ=255)
cATTGTTGACACACCTCTGGTCATGATAGTATCAat < 1:2010053/36‑1 (MQ=255)
aTTGTTGACACACCTCTGGTCATGATAGTATCAata > 1:8148545/1‑36 (MQ=255)
aTTGTTGACACACCTCTGGTCATGATAGTATCAata > 1:409883/1‑36 (MQ=255)
ttgttgACACACCTCTGGTCATGATAGTATCAatat > 1:6424190/1‑36 (MQ=255)
tgttgACACACCTCTGGTCATGATAGTATCAATAtt < 1:6472105/36‑1 (MQ=255)
tgttgACACACCTCTGGTCATGATAGTATCAATAtt < 1:6501416/36‑1 (MQ=255)
tgttgACACACCTCTGGTCATGATAGTATCAATAtt < 1:4508468/36‑1 (MQ=255)
tgttgACACACCTCTGGTCATGATAGTATCAATAtt < 1:576956/36‑1 (MQ=255)
gttgACACACCTCTGGTCATGATAGTATCAATATTc > 1:6830766/1‑36 (MQ=255)
gttgACACACCTCTGGTCATGATAGTATCAATATTc < 1:4590438/36‑1 (MQ=255)
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TCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTC > REL606/4134678‑4134745
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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