Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 47 [4] [2] 31 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)29 (0.530) 21/64 NT 93.5% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 2 (0.030)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  >  REL606/3901897‑3901963
                                  |                                
gtgtttaactgtccaactttttggggtcagtacagg                                 <  1:3124728‑M2/2‑1 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaGGt                                >  1:6676501‑M2/34‑36 (MQ=255)
 tgtttaactgtccaactttttggggtcagtacaGGt                                >  1:4333004‑M2/34‑36 (MQ=255)
     taactgtccgactttttggggtcagtacaGGTTGcc                            <  1:2257480‑M2/7‑1 (MQ=255)
      aactgtccaactttttggggtcagtacaGGTTGccc                           <  1:6885048‑M2/8‑1 (MQ=255)
      aactgtccaactttttggggtcagtacaGGTTGccc                           <  1:4300724‑M2/8‑1 (MQ=255)
       actgtccaactttttggggtcagtacaGGTTGCCCa                          >  1:3241439‑M2/28‑36 (MQ=255)
        ctgtccaactttttggggtcagtacaGGTTGCCCAg                         <  1:1501402‑M2/10‑1 (MQ=255)
         tgtccaactttttggggtcagtacaGGTTGCCCAgg                        >  1:5260205‑M2/26‑36 (MQ=255)
          gtccaactttttggggtcagtacaGGTTGCCCAGGt                       <  1:7182572‑M2/12‑1 (MQ=255)
           ttGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTg                      >  1:6907870/1‑36 (MQ=255)
            tGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGa                     >  1:6673499/1‑36 (MQ=255)
              aactttttggggtcagtacaGGTTGCCCAGGTGAcc                   <  1:3944526‑M2/16‑1 (MQ=255)
              aactttttggggtcagtacaGGTTGCCCAGGTGAcc                   >  1:2295320‑M2/21‑36 (MQ=255)
              aactttttggggtcagtacaGGTTGCCCAGGCGAcc                   >  1:5208128‑M2/21‑36 (MQ=255)
              aactttttcgggtcagtacaGGTTGCCCAGGTGAcc                   >  1:2802335‑M2/21‑36 (MQ=255)
                ctttttggggtcagtacaGGTTGCCCAGGTGACCAg                 >  1:1798994‑M2/19‑36 (MQ=255)
                 tttttggggtcagtacaGGTTGCCCAGGTGACCAGc                <  1:2402067‑M2/19‑1 (MQ=255)
                   tttggggtcagtacaGGTTGCCCAGGTGACCAGCAc              <  1:5389028‑M2/21‑1 (MQ=255)
                      ggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc           <  1:5473568‑M2/24‑1 (MQ=255)
                      ggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc           <  1:5727704‑M2/24‑1 (MQ=255)
                        ggtcagtacaGGTTGCCCAGGTGACCAGCAcgccgc         <  1:7057901‑M2/26‑1 (MQ=255)
                         gtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc        <  1:2322056‑M2/27‑1 (MQ=255)
                         gtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc        <  1:1546030‑M2/27‑1 (MQ=255)
                         gtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc        >  1:7214063‑M2/10‑36 (MQ=255)
                          tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa       <  1:3049105‑M2/28‑1 (MQ=255)
                           cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa      <  1:5746792‑M2/29‑1 (MQ=255)
                           cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa      >  1:633399‑M2/8‑36 (MQ=255)
                               acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc  <  1:94320‑M2/33‑1 (MQ=255)
                               acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc  <  1:2415721‑M2/33‑1 (MQ=255)
                               acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc  <  1:2402568‑M2/33‑1 (MQ=255)
                                  |                                
CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  >  REL606/3901897‑3901963

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG