Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,819,9980G→T 9.6% 1.7 ‑8.7 ‑0.073105xniexonuclease IX
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (8/0):  ref base (19/46):  total (27/46)
Fisher's exact test strand distribution p-value = 1.65e-04
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.87e-01

GATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCAT  >  REL606/2819965‑2820033
                                 |                                   
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt                                   <  1:3108818/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt                                   <  1:1206936/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt                                   <  1:248703/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt                                   <  1:5726012/36‑1 (MQ=255)
 aTCTTTAAGGGGGTTATCGTGGCTGTTTATTTTCtt                                  >  1:7636629/1‑36 (MQ=37)
 aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTTCtt                                  >  1:4157030/1‑36 (MQ=255)
 aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt                                  <  1:5645043/36‑1 (MQ=255)
 aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt                                  <  1:445467/36‑1 (MQ=255)
 aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt                                  <  1:145333/36‑1 (MQ=255)
  tCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTa                                 <  1:6980673/36‑1 (MQ=255)
    tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt                               <  1:1117049/36‑1 (MQ=255)
    tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt                               <  1:1432929/36‑1 (MQ=255)
    tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt                               <  1:5651194/36‑1 (MQ=255)
    tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt                               <  1:1619345/36‑1 (MQ=255)
    tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt                               <  1:6375876/36‑1 (MQ=255)
     ttAAGGGGGTTATCGTGGCTGTTCTTTTGCTTTttt                              >  1:4271874/1‑35 (MQ=37)
     ttAAGGGGGTTATCGTGGCTGTTCATTTTCTTTttt                              >  1:2195671/1‑35 (MQ=37)
     ttAAGGGGGTTATCGTGGCTGTTCATTTTCTTTttt                              >  1:4535836/1‑35 (MQ=37)
      tAAGGGGGTTATCGTGGCTGTTCATTTTGTTAtttt                             >  1:6502798/1‑34 (MQ=37)
      tAAGGGGGTTATCGTGGCTGTTCATTTTCTTTtttt                             >  1:1548002/1‑34 (MQ=25)
      tAAGGGGGTTATCGTGGCTGTTCATTTGCTTAttat                             <  1:6550171/36‑3 (MQ=255)
      tAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGt                             <  1:7866573/36‑1 (MQ=255)
        aGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCg                           <  1:2595375/36‑1 (MQ=255)
         gggggTTATCGTGGCTGTTCATTTGCTTATTGTCGa                          <  1:6833828/36‑1 (MQ=255)
          ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt                         <  1:4329975/36‑1 (MQ=255)
          ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt                         <  1:1896023/36‑1 (MQ=255)
           gggTTATCGTGGCTGTTTGTTTTCTTATTTTCGAtt                        >  1:3288516/1‑35 (MQ=19)
           gggTTATCGTGGCTGTTCATTTGCTTATTGTCGATg                        <  1:3876413/36‑1 (MQ=255)
           gggTTATCGTGGCTGTTCATTTGCTTATTGTCGATg                        <  1:6995129/36‑1 (MQ=255)
            ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGc                       <  1:4104480/36‑1 (MQ=255)
              ttATCGTGGCTGTTCATTTTCTTATTTTCTATTCAc                     >  1:7522419/1‑36 (MQ=19)
              ttATCGTGGCTGTTCATTTGCTTATTTTCGATGCAc                     >  1:4615800/1‑36 (MQ=255)
              ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc                     <  1:3850497/36‑1 (MQ=255)
              ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc                     <  1:6085579/36‑1 (MQ=255)
              ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc                     <  1:7667819/36‑1 (MQ=255)
                aTCGTGGCTGTTCATTTGCTTATTTTCGATGCACTg                   >  1:5639821/1‑36 (MQ=255)
                aTCGTGGCTGTTCATTTGCTTATTGTCGATGCACTg                   >  1:7718682/1‑36 (MQ=255)
                aTCGTGGCTGTTCATTTGCTTATTGTCGATGCACTg                   <  1:7766316/36‑1 (MQ=255)
                  cGTGGCTGTTCATTTGCTTATTGTCGATGCACTGaa                 <  1:3460508/36‑1 (MQ=255)
                    tGGCTGTTCATTTGCTTATTGTCTATGCACTGAATc               >  1:2644386/1‑36 (MQ=255)
                    tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc               >  1:6036280/1‑36 (MQ=255)
                    tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc               >  1:7544834/1‑36 (MQ=255)
                    tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc               >  1:1097703/1‑36 (MQ=255)
                    tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc               <  1:4768689/36‑1 (MQ=255)
                     ggCTGTTCATTTGCTTATTGTCGATGCACTGAATCt              <  1:5808266/36‑1 (MQ=255)
                     ggCTGTTCATTTGCTTATTGTCGATGCACTGAATCt              >  1:1776584/1‑36 (MQ=255)
                      gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt             >  1:5089160/1‑36 (MQ=255)
                      gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt             >  1:7349813/1‑36 (MQ=255)
                      gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt             <  1:3260885/36‑1 (MQ=255)
                       cTGTTCATTTGCTTATTGTCGATGCACTGAATCTTa            <  1:2902515/36‑1 (MQ=255)
                       cTGTTCATTTGCTTATTGTCGATGCACTGAATCTTa            >  1:3398432/1‑36 (MQ=255)
                        tgctCATTTGCTTATTGTCGATGCACTGAATCTTAt           >  1:7901360/4‑36 (MQ=255)
                         gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt          <  1:219258/36‑1 (MQ=255)
                         gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt          <  1:3013870/36‑1 (MQ=255)
                         gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt          >  1:1444594/1‑36 (MQ=255)
                         gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt          <  1:7745500/36‑1 (MQ=255)
                         gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt          <  1:5403161/36‑1 (MQ=255)
                          ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc         <  1:3762642/36‑1 (MQ=255)
                          ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc         <  1:7600472/36‑1 (MQ=255)
                          ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc         <  1:7893277/36‑1 (MQ=255)
                           tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg        <  1:3483512/36‑1 (MQ=255)
                           tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg        >  1:1113248/1‑36 (MQ=255)
                             aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc      <  1:2318558/36‑1 (MQ=255)
                             aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc      <  1:4942979/36‑1 (MQ=255)
                              tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg     <  1:6686389/36‑1 (MQ=255)
                              tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg     <  1:1796957/36‑1 (MQ=255)
                              tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg     <  1:656499/36‑1 (MQ=255)
                              tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg     >  1:6268306/1‑36 (MQ=255)
                              tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg     >  1:1321529/1‑36 (MQ=255)
                               ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc    >  1:2115139/1‑36 (MQ=255)
                               ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc    <  1:3356197/36‑1 (MQ=255)
                               ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc    <  1:5253203/36‑1 (MQ=255)
                                tGCTTATTGTCGATGCACTGAATCTTATTCGTCGCa   >  1:5115917/1‑36 (MQ=255)
                                 gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt  >  1:4364221/1‑36 (MQ=255)
                                 gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt  <  1:4488820/36‑1 (MQ=255)
                                 |                                   
GATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCAT  >  REL606/2819965‑2820033

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG