New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1 =0 (0.000)52 (0.860) 39/70 NT 100% intergenic (–/‑189) –/thrL –/thr operon leader peptide
?REL606 = 4629812 0 (0.000)intergenic (+24/–) lasT/– predicted rRNA methyltransferase/–

AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCT...................................  <  REL606/35‑1
...................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  <  REL606/4629812‑4629778
                                                                      
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCTG                                    >  1:837103/1‑36 (MQ=1)
 GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                   <  1:1168971/36‑1 (MQ=1)
 GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                   >  1:830192/1‑36 (MQ=1)
 GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                   >  1:6166178/1‑36 (MQ=1)
 GACATATTGCCCGTTGCAGTCAGAATGAAAAGCTGA                                   >  1:7266585/1‑36 (MQ=1)
   CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                 <  1:1237781/36‑1 (MQ=1)
   CATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAA                                 <  1:3387852/36‑1 (MQ=1)
    ATATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAA                                <  1:1161969/36‑1 (MQ=1)
     TATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAA                               <  1:6432930/36‑1 (MQ=1)
     TATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAA                               >  1:477686/1‑36 (MQ=1)
      ATTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAAT                              >  1:5226978/1‑36 (MQ=1)
       TTGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATA                             <  1:7064917/36‑1 (MQ=1)
        TGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                            <  1:1448631/36‑1 (MQ=1)
        TGCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATAC                            >  1:2746342/1‑36 (MQ=1)
        TGCCCATTGCAGTCAGAATGAAAAGCTGAAAAATAC                            <  1:7344457/36‑1 (MQ=0)
         GCCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACT                           >  1:679143/1‑36 (MQ=32)
          CCCGTTGCAGTCAGAATGAAAAGCTGAAAAATACTT                          <  1:6213186/36‑1 (MQ=35)
           CCGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTA                         >  1:6040355/1‑36 (MQ=38)
            CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTAC                        <  1:2954429/36‑1 (MQ=40)
            CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTAC                        <  1:6230759/36‑1 (MQ=40)
            CGTTGCAGTCAGAATGAAAAGCTGAAAAATACTTAC                        <  1:2873608/36‑1 (MQ=40)
              TTGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                      >  1:2652243/1‑36 (MQ=255)
              TTGCAGTCAGAATGAAAAGCTGAAAAATACTTACTA                      >  1:1867431/1‑36 (MQ=255)
              TTGCAGTAAGAATGAAAAGCTGAAAAATACTTACTA                      <  1:4784943/36‑1 (MQ=255)
              TTGAAGTCAGAATGAAAAGCTGAAAAATACTTACTA                      <  1:7138069/36‑1 (MQ=255)
               TGCAGTCAGAATGAAAAGCTGAAAAATACTTACTAA                     >  1:6426364/1‑36 (MQ=255)
               TGCAGTCAGAATGAAAAGCTGAAAAATACTTACTAA                     <  1:7210572/36‑1 (MQ=255)
                GCAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                    >  1:313858/1‑36 (MQ=255)
                GCAGTCAGAATGAAAAGCTGAAAAATACTTACTAAG                    >  1:4927969/1‑36 (MQ=255)
                  AGTCAGAATTAAAAGCTGAAAAATACTTACTAAGGC                  >  1:3739542/1‑36 (MQ=255)
                  AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                  >  1:967095/1‑36 (MQ=255)
                  AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                  <  1:1225321/36‑1 (MQ=255)
                  AGTCAGAATGAAAAGCTGAAAAATACTTACTAAGGC                  <  1:2321554/36‑1 (MQ=255)
                   GTCAGAATGAAAAGCTGAAAAATACTTACTAAGGCG                 >  1:143258/1‑36 (MQ=255)
                    TCAGAATGAAAAGCTGAAAAATACTTACTAAGGCGT                <  1:1060733/36‑1 (MQ=255)
                     CAGAATGAAAAGCTGAAAAATACTTACTAAGGCGTT               >  1:277519/1‑36 (MQ=255)
                      AGAATGAAAAGCTGAAAAATACTTACTAAGGCGTTT              <  1:7782424/36‑1 (MQ=40)
                       GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT             <  1:659973/36‑1 (MQ=38)
                       GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT             >  1:3275486/1‑36 (MQ=38)
                       GAATGAAAAGCTGAAAAATACTTACTAAGGCGTTTT             >  1:5416424/1‑36 (MQ=38)
                        AATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTT            <  1:6936008/36‑1 (MQ=35)
                         ATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT           >  1:2621128/1‑36 (MQ=32)
                         ATGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTT           >  1:3336834/1‑36 (MQ=32)
                          TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA          >  1:2497792/1‑36 (MQ=1)
                          TGAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTA          <  1:1154262/36‑1 (MQ=1)
                           GAAAAGCTGAAAAATACTTACTAAGGCGTTTTTTAT         <  1:2936149/36‑1 (MQ=1)
                            AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTATT        <  1:2074422/36‑1 (MQ=1)
                            AAAAGCTGAAAAATACTTACTAAGGCGTTTTTTATT        >  1:4247535/1‑36 (MQ=1)
                             AAAGCTGAAAAATACTTACTAAGGCGTTTTTTATTT       <  1:6870937/36‑1 (MQ=1)
                                GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT    <  1:6776379/36‑1 (MQ=1)
                                GCTGAAAAATACTTACTAAGGCGTTTTTTATTTGGT    >  1:7873690/1‑36 (MQ=1)
                                  TGAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  >  1:2414069/1‑36 (MQ=1)
                                                                      
AGACATATTGCCCGTTGCAGTCAGAATGAAAAGCT...................................  <  REL606/35‑1
...................................GAAAAATACTTACTAAGGCGTTTTTTATTTGGTGA  <  REL606/4629812‑4629778

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 35 ≤  ATCG  < 37 ≤  ATCG