Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,389,357 | G→A | 13.5% | S217N (AGT→AAT) | yjfJ → | predicted transcriptional regulator effector protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,389,357 | 0 | G→A | 13.5% | 4.7 ‑3.0 ‑0.0 | 37 | 650 | yjfJ | predicted transcriptional regulator effector protein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (15/17): total (20/17) | ||||||||||
Fisher's exact test strand distribution p-value = 4.98e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.92e-01 |
GCTGGCGGAAGCCGGAATTGGCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACTGCAACGCC > REL606/4389322‑4389392
|
gCTGGCGGAAGCCGGAATTGGCGGTAGCAATAAAAg < 1:1736444/36‑1 (MQ=255)
cTGGCGGAAGCCGGAATTGGCGGTAGCAATAAAAGt < 1:3128673/36‑1 (MQ=255)
gCGGAAGCCGGAATTGGCGGTAGCAATAAAAGTAgc < 1:6761730/36‑1 (MQ=255)
gCGGAAGCCGGAATTGGCGGTAGCAATAAAAGTAgc < 1:4086195/36‑1 (MQ=255)
ggAAGCCGGAATTGGCGGTGGCAATAAAAATAacgg > 1:1087971/1‑35 (MQ=21)
gAAGCCGGAATTGGCGGTAGCAATAAAAGAAGCGcc > 1:107391/1‑36 (MQ=255)
gCCGGAATTGGCGGTAGCAATAAAAAAAGCGccccg > 1:7758067/1‑34 (MQ=25)
cGGAATTGGCGGTAGCAATAAAAATAGGGCCCAggg > 1:1718878/1‑35 (MQ=25)
cGGAATTGGCGGTAGCAATAAAAAAAGGGCCCCGGa > 1:1485756/1‑36 (MQ=19)
ggAATTGGCGGTAGTAATAAAAATAGCGCACAgggt > 1:4134196/1‑34 (MQ=25)
aTTGGCGGTAGCAATAAAAGTAGCGCCCAGGATGTa < 1:4709761/36‑1 (MQ=255)
ttGGCGGTAGCAATAAAAGTAGCGCCCAGGATGTAt < 1:7914272/36‑1 (MQ=255)
tGGCGGTAGCAATAAAAGTAGCGCCCAGGATGTAtt < 1:7246789/36‑1 (MQ=255)
ggCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTa < 1:3062089/36‑1 (MQ=255)
ggCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTa > 1:3822491/1‑36 (MQ=255)
ggCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTa < 1:1466099/36‑1 (MQ=255)
ggCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTa < 1:1451113/36‑1 (MQ=255)
ggCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTa > 1:447869/1‑36 (MQ=255)
cGGTAGCAATAAAAGTAGCGCCCCGGATGTATTAGc < 1:2807521/36‑1 (MQ=255)
cGGTAGCAATAAAAGTAGCGCCCAGGATGTATTAGc > 1:1314260/1‑36 (MQ=255)
cGGTAGCAATAAAAGTAGCGCCCAGGATGTATTAGc > 1:6523341/1‑36 (MQ=255)
ggTAGCAATAAAAGTAGCGCCCAGGATGTATTAGCa > 1:5429678/1‑36 (MQ=255)
gTAGCAATAAAAGTAGCGCCCAGGATGTATTAGCaa > 1:7814991/1‑36 (MQ=255)
aGCAATAAAAGTAGCGCCCAGGATGTATTAGCAAGa > 1:4000883/1‑36 (MQ=255)
gCAATAAAAGTAGCGCCCAGGATGTATTAGCAAGAc > 1:5451044/1‑36 (MQ=255)
gCAATAAAAGTAGCGCCCAGGATGTATTAGCAAGAc < 1:7844621/36‑1 (MQ=255)
cAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACt > 1:7958410/1‑36 (MQ=255)
cAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACt > 1:3144233/1‑36 (MQ=255)
cAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACt > 1:3019513/1‑36 (MQ=255)
cAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACt > 1:8293655/1‑36 (MQ=255)
aaTAAAAGTAGCGCCCAGGATGTATTAGCAAGACTg > 1:6387803/1‑36 (MQ=255)
aaTAAAAGTAGCGCCCAGGATGTATTAGCAAGACTg < 1:1795798/36‑1 (MQ=255)
aaTAAAAGTAGCGCCCAGGATGTATTAGCAACACTg > 1:4444059/1‑36 (MQ=255)
aTAAAAGTAGCGCCCAGGATGTATTAGCAAGACTGc < 1:2514376/36‑1 (MQ=255)
tAAAAGTAGCGCCCAGGATGTATTAGCAAGACTGCa < 1:8054710/36‑1 (MQ=255)
aaGTAGCGCCCAGGATGTATTAGCAAGACTGCAACg < 1:4272525/36‑1 (MQ=255)
aaGTAGCGCCCAGGATGTATTAGCAAGACTGCAACg < 1:1135688/36‑1 (MQ=255)
aGTAGCGCCCAGGATGTATTAGCAAGACTGCAACGc < 1:1953610/36‑1 (MQ=255)
gTAGCGCCCAGGATGTATTAGCAAGACTGCAACGcc > 1:5562540/1‑36 (MQ=255)
gTAGCGCCCAGGATGTATTAGCAAGACTGCAACGcc > 1:849303/1‑36 (MQ=255)
|
GCTGGCGGAAGCCGGAATTGGCGGTAGCAATAAAAGTAGCGCCCAGGATGTATTAGCAAGACTGCAACGCC > REL606/4389322‑4389392
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|