Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,127,318 | A→G | 18.0% | E25G (GAA→GGA) | frwD → | predicted enzyme IIB component of PTS |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,127,318 | 0 | A→G | 18.0% | 2.2 ‑4.1 0.0 | 40 | 74 | frwD | predicted enzyme IIB component of PTS |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (17/15): total (25/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.62e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTGGCGCATACTTATATGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTCAGCA > REL606/4127284‑4127353
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gtggcgCATACTTATATGGCGGCGGAACGGCTGGaa > 1:2940717/1‑36 (MQ=255)
ggcgCATACTTATATGGCGGCGGAACGGCTGGaaaa < 1:2313144/36‑1 (MQ=255)
ggcgCATACTTATATGGCGGCGGAACGGCTGGaaaa < 1:1602041/36‑1 (MQ=255)
gcgcATACTTATATGGCGGCGGAACGGCTGGgaacg > 1:6954312/1‑34 (MQ=37)
gcgcATACTTATATGGCGGCGGAACGGCTGGGAAAg > 1:4721435/1‑36 (MQ=255)
cgcATACTTATATGGCGGCGGAACGGCTGGGAAAGt > 1:6881173/1‑36 (MQ=255)
cgcATACTTATATGGCGGCGGAACGGCTGGAAAAGt < 1:353404/36‑1 (MQ=255)
gcATACTTATATGGCGGCGGAACGGCTGGGAAAGtt > 1:2444817/1‑36 (MQ=255)
cATACTTATATGGCGGCGGAACGGCTGGGAAAGttt > 1:7136638/1‑35 (MQ=255)
cATACTTATATGGCGGCGGAACGGCTGGAAAAGTtg < 1:5945787/36‑1 (MQ=255)
tACTTATATGGCGNCGGAACGGCTGGGAAAGTtgtg > 1:4344086/1‑36 (MQ=38)
tACTTATATGGCGGCGGAACGGCTGGAAAAGTtttg > 1:5796074/1‑36 (MQ=255)
cTTATATGGCGGCGGAACGGCTGGGAAAGTTGTGcc > 1:3106994/1‑36 (MQ=255)
atatGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGt < 1:4207195/36‑1 (MQ=255)
atatGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGt > 1:3428222/1‑36 (MQ=255)
atatGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGt < 1:156757/36‑1 (MQ=255)
tatGGCGGCGGAACGGCTGGGAAAGGTTTGGCTGtt > 1:4571645/1‑36 (MQ=16)
tGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGTTag < 1:4323944/36‑1 (MQ=255)
ggcggcGGAACGGCTGGAAAAGTTGTGCCTGTTcga > 1:5524625/1‑36 (MQ=255)
ggcggcGGAACGGCTGGAAAAGTTGTGCCTGTTaga < 1:7362477/36‑1 (MQ=255)
ggcggcGGAACGGCTGGAAAAGTTGTGCCTGTTaga > 1:4968951/1‑36 (MQ=255)
ggcggcGGAACGGATGGAAAAGTTGTGACTGTTaga > 1:3211659/1‑36 (MQ=38)
gcggcgGAACGGCTGGAAAAGTTGTGCCTGTTagag > 1:7469114/1‑36 (MQ=255)
cggcggAACGGCTGGAAAAGTTGTGCCTGTTAgaga < 1:3605553/36‑1 (MQ=255)
cggcggAACGGCTGGAAAAGTTGTGCCTGTTAgaga < 1:2551932/36‑1 (MQ=255)
ggcggAACGGCTGGAAAAGTTGTGCCTGTTagagta > 1:6396075/1‑34 (MQ=255)
ggcggAACGGCTGGAAAAGTTGTGCCTGTTAGAGaa > 1:6630866/1‑36 (MQ=255)
ggcggAACGGCTGGAAAAGTTGTGCCTGTTAGAGaa > 1:437837/1‑36 (MQ=255)
gcggAACGGCTGGGAAACTTATGCCTGTTATAGAAg > 1:6644028/1‑36 (MQ=19)
gcggAACGGCTGGAAAAGTTGTGCCTGTTAGAGAAg < 1:1308313/36‑1 (MQ=255)
ggAACGGCTGGAAAAGTTGTGCGTGTTAGAGAAggg > 1:1003409/1‑34 (MQ=38)
ggAACGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTg > 1:2374992/1‑36 (MQ=255)
gAACGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTgg > 1:7330664/1‑36 (MQ=255)
aaCGGCTGGAAAAGTTTTGCCTTTTAGAGGAGTggg > 1:2929080/1‑36 (MQ=25)
aCGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTgggg < 1:3380873/36‑1 (MQ=255)
aCGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTgggg > 1:2560572/1‑36 (MQ=255)
cGGCTGGAAAAGTTGTGCCTGTTGGAGAAGTGGGGa < 1:7198146/36‑1 (MQ=255)
ggCTGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAg > 1:2866425/1‑36 (MQ=255)
gCTGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGt < 1:4852229/36‑1 (MQ=255)
cTGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTc < 1:1284249/36‑1 (MQ=255)
tGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTCa > 1:5937951/1‑36 (MQ=255)
ggAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTCAg > 1:438750/1‑36 (MQ=255)
gAAAAGTTGTGCCTGTTAGAGAATTGGGGAGTCAGc < 1:166239/36‑1 (MQ=255)
gAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTCAGc < 1:6787841/36‑1 (MQ=255)
aaaaGTTGTGCCTGTTAGAGAAGTGGGGAGTCAGCa < 1:736582/36‑1 (MQ=255)
aaaaGTTGTGCCTGTTAGAGAAGTGGGGAGTCAGCa > 1:4606935/1‑36 (MQ=255)
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GTGGCGCATACTTATATGGCGGCGGAACGGCTGGAAAAGTTGTGCCTGTTAGAGAAGTGGGGAGTCAGCA > REL606/4127284‑4127353
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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