Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 866,370 | G→T | 24.2% | L196F (TTG→TTT) | yliE → | conserved inner membrane protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 866,370 | 0 | G→T | 24.2% | 7.6 ‑4.3 0.0 | 32 | 588 | yliE | conserved inner membrane protein |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (12/12): total (20/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.35e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GAAATCTATTTTTATTATCCTGGCGGTAATTTATTGAACGCATCAGATAAACTTTTTTATCTGCCGTTTGC > REL606/866335‑866405
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gAAATCTATTTTTATTATCCTGGCGGTAATTTATTg < 1:2995908/36‑1 (MQ=255)
aaTCTATTTTTATTATCCTGGCGGTAATTTATTGaa < 1:2262901/36‑1 (MQ=255)
aTTTTTATTATCCTGGCGGTAATTTATTGAACGCAt < 1:2940661/36‑1 (MQ=255)
tttttATTATCCTGGCGGTAATTTATTTAACGCATc > 1:867072/1‑36 (MQ=255)
tttttATTATCCTGGCGGTAATTTATTGAACGCATc < 1:839820/36‑1 (MQ=255)
tttttATTATCCTGGCGGTAATTTATTGAACGCATc > 1:4458160/1‑36 (MQ=255)
ttttATTATCCTGGCGGTAATTTATTGAACGCATCa < 1:3072479/36‑1 (MQ=255)
attatCCTGGCGGTAATTTATTTAACGCATCAGATa > 1:5894952/1‑36 (MQ=255)
attatCCTGGCGGTAATTTATTTAACGCATCAGATa > 1:5392611/1‑36 (MQ=255)
attatCCTGGCGGCAATTTATTTAACGCATCAGATa > 1:7171707/1‑36 (MQ=37)
ttatCCTGGCGGTAATTTATTTAACGCATCTGATaa > 1:7367170/1‑36 (MQ=37)
tatCCTGGCGGTAATTTATTGAACGCATCAGATaaa > 1:1107563/1‑36 (MQ=255)
atCCTGGCGGTAATTTATTGAACGCATCAGATAAAc < 1:3597974/36‑1 (MQ=255)
tCCTGGCGGTAATTTTTTTAAAGCATCAGATaaaat > 1:2423047/1‑34 (MQ=18)
tCCTGGCGGTAATTTATTTAACGCATCAGATAAACt > 1:560692/1‑36 (MQ=255)
tCCTGGCGGTAATTTATTGAACGCATCAGATAAACt < 1:3819963/36‑1 (MQ=255)
tGGCGGTAATTTTTTTAACGCATTAGATAAAAtttt > 1:5536490/1‑36 (MQ=16)
tGGCGGTAATTTATTGAACGCATCAGATAAACtttt < 1:6386154/36‑1 (MQ=255)
cGGTAATTTATTGAACGCATCAGATAAACTTTTTTa > 1:3869438/1‑36 (MQ=255)
gTAATTTATTGAACGCATCAGATAAACTTTTTTATc > 1:7803274/1‑36 (MQ=255)
gTAATTTATTGAACGCATCAGATAAACTTTTTTATc > 1:7189010/1‑36 (MQ=255)
tAATTTATTGAACGCATCAGATAAACTTTTTTATCt < 1:2614626/36‑1 (MQ=255)
tAATTTATTGAACGCATCAGATAAACTTTTTTATCt > 1:4616955/1‑36 (MQ=255)
aTTTATTGAACGCATCAGATAAACTTTTTTATCTGc > 1:7168880/1‑36 (MQ=255)
aTTTATTGAACGCATCAGATAAACTTTTTTATCTGc > 1:3008141/1‑36 (MQ=255)
aTTTATTGAACGCATCAGATAAACTTTTTTATCTGc < 1:7891433/36‑1 (MQ=255)
tttATTGAACGCATCAGATAAACTTTTTTATCTGcc > 1:5538828/1‑36 (MQ=255)
tATTGAACGCATCAGATAAACTTTTTTATCTGCCGt > 1:2181395/1‑36 (MQ=255)
aTTGAACGCATCAGATAAACTTTTTTATCTGCCGtt > 1:6553941/1‑36 (MQ=255)
ttGAACGCATCAGATAAACTTTTTTATCTGCCGttt < 1:2619385/36‑1 (MQ=255)
ttGAACGCATCAGATAAACTTTTTTATCTGCCGttt > 1:4210701/1‑36 (MQ=255)
ttGAACGCATCAGATAAACTTTTTTATCTGCCGttt < 1:5394980/36‑1 (MQ=255)
tGAACGCATCAGATAAACTTTTTTATCTGCCGTTTg < 1:6991765/36‑1 (MQ=255)
gAACGCATCAGATAAACTTTTTTATCTGCCGTTTGc < 1:680848/36‑1 (MQ=255)
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GAAATCTATTTTTATTATCCTGGCGGTAATTTATTGAACGCATCAGATAAACTTTTTTATCTGCCGTTTGC > REL606/866335‑866405
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|