New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 161952928 (0.570)6 (0.120) 4/60 NT 20.7% intergenic (‑138/+79) rem/hokD predicted protein/small toxic polypeptide
?REL606 1946064 = 18 (0.310)coding (144/390 nt) cheY chemotaxis regulator transmitting signal to flagellar motor component

CTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGGATGCC  >  REL606/1619494‑1619563
                                   |                                  
cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                                    <  1:5589427‑M1/36‑1 (MQ=255)
cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                                    >  1:5229521‑M1/1‑36 (MQ=255)
cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                                    <  1:2297480‑M1/36‑1 (MQ=255)
cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                                    >  1:5069320‑M1/1‑36 (MQ=255)
   cAAACGCGTTGAAAATAAAAACAAAAACCCGCCGaa                                 >  1:6743974/1‑36 (MQ=255)
      aCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCg                              >  1:5570047/1‑36 (MQ=255)
       cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCgg                             >  1:3105687/1‑36 (MQ=255)
        gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                            >  1:5346376/1‑36 (MQ=255)
         cgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                           >  1:4919505/1‑36 (MQ=255)
          gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGtt                          <  1:771021/36‑1 (MQ=255)
           ttGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                         <  1:5134496/36‑1 (MQ=255)
            tGAAAATAAAAACGAAAACTCGCCGAAGCGGGTTaa                        >  1:2615088/1‑36 (MQ=25)
            tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                        >  1:2243477/1‑36 (MQ=255)
            tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                        >  1:5707142/1‑36 (MQ=255)
            tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                        <  1:873277/36‑1 (MQ=255)
            tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                        <  1:6173031/36‑1 (MQ=255)
             gAAAATAAAAACAAAAACCCGCCGAAGCGGGGTAag                       >  1:2072663/1‑36 (MQ=255)
              aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt                      <  1:5884458/36‑1 (MQ=255)
                 aTAAAAACAAAAACCCGCCGAAGCGGGTTAagtgcg                   >  1:2503488/1‑36 (MQ=255)
                  tAAAAACAAAAACCCGCCGAAGCGGGCTAagtgcga                  >  1:5391221/1‑36 (MQ=255)
                     aaacaaaaacCCGCCtgcctgcaacttattgagagc               <  1:5596001‑M1/36‑22 (MQ=255)
                     aaacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg               >  1:1916457/1‑36 (MQ=255)
                      aacaaaaacCCGCCtgcctgcaacttattgagagcg              <  1:5703673‑M1/36‑23 (MQ=255)
                      aacaaaaacCCGCCGAAGCGGGTTAagtgcgagatc              >  1:1185486/1‑33 (MQ=255)
                       acaaaaacCCGCCGAAGCGGGTTAagtgcgagtgcg             >  1:6131399/1‑36 (MQ=255)
                         aaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGtt           <  1:1140883/36‑1 (MQ=255)
                          aaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg          <  1:4744235/36‑1 (MQ=255)
                          aaaaaCCGCCtgcctgcaacttattgagagcgtcga          <  1:5952449‑M1/36‑27 (MQ=255)
                           aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa         <  1:2821909/36‑1 (MQ=255)
                            aacCCGCCtgcctgcaacttattgagagcgtcgacg        <  1:2188979‑M1/36‑29 (MQ=255)
                            aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg        <  1:6039803/36‑1 (MQ=255)
                            aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg        >  1:1764635/1‑36 (MQ=255)
                             acCCGCCtgcctgcaacttattgagagcgtcgacgc       <  1:4967839‑M1/36‑30 (MQ=255)
                             acCCGCCtgcctgcaacttattgagagcgtcgacgc       <  1:5792264‑M1/36‑30 (MQ=255)
                               ccgccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAt     <  1:516318/36‑1 (MQ=255)
                               ccGCCtgcctgcaacttattgagagcgtcgacgcca     >  1:6119602‑M1/1‑5 (MQ=255)
                               ccGCCtgcctgcaacttattgagagcgtcgacgcca     >  1:1900601‑M1/1‑5 (MQ=255)
                                cgccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAtg    >  1:678026/1‑36 (MQ=255)
                                cGCCtgcctgcaacttattgagagcgtcgacgccat    <  1:166541‑M1/36‑33 (MQ=255)
                                 gcctgcctgcaacttattgagagcgtcgacgccatc   >  1:494512‑M1/1‑3 (MQ=255)
                                 gcctgcctgcaacttattgagagcgtcgacgccatc   >  1:98899‑M1/1‑3 (MQ=255)
                                 gccgAAGCGGGTTACGTGCGAGTGCGTTGAGGAtgc   >  1:6155239/1‑36 (MQ=255)
                                 gccgAAGCGGGTTAAGAGCGAGTGCGTTGAGGAtg  >  1:3747002/1‑35 (MQ=38)
                                  ccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAtgcc  <  1:4063917/36‑1 (MQ=255)
                                   |                                  
CTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGGATGCC  >  REL606/1619494‑1619563

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG