Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,366,935 | G→T | 24.2% | A197A (GCC→GCA) | yjeP ← | predicted mechanosensitive channel |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,366,935 | 0 | G→T | 24.2% | 4.4 ‑6.0 0.0 | 40 | 591 | yjeP | predicted mechanosensitive channel |
Reads supporting (aligned to +/- strand): new base (9/2): ref base (7/22): total (16/24) | ||||||||||
Fisher's exact test strand distribution p-value = 2.53e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCAACG > REL606/4366900‑4366968
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tctGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTg < 1:2838539/36‑1 (MQ=255)
gtGAGCGGAAGCGCGCTAATTCCTGGCGGTTATTgg < 1:7778366/35‑1 (MQ=255)
tGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGc < 1:623835/36‑1 (MQ=255)
tAAGCGCGCTAATTCCTGGCGGTTTTTTGCAGAccg > 1:2833135/1‑34 (MQ=37)
aGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCt < 1:5017578/36‑1 (MQ=255)
aGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCt > 1:1769183/1‑36 (MQ=255)
aGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCt < 1:6710227/36‑1 (MQ=255)
gcgcgcTAATTCCTGGCGGTTATTGGCAGACAGCTg < 1:5130665/36‑1 (MQ=255)
gcgcTAATTCCTGGCGGTTATTTGCAGACAGCTgcg > 1:2975340/1‑36 (MQ=255)
gcgcTAATTCCTGGCGGTTATTTGCAGACAGATgcg > 1:3373202/1‑36 (MQ=37)
gcTAATTCCTGGCGGTTATTGGCAGACAGCTGCGcc < 1:4773011/36‑1 (MQ=255)
cTAATTCCTGGCGGTTATTTGCAGACAGCTGCGCCa > 1:4209264/1‑36 (MQ=255)
cTAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCa < 1:4553093/36‑1 (MQ=255)
tAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAg < 1:6692140/36‑1 (MQ=255)
tAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAg < 1:1170525/36‑1 (MQ=255)
tAATTCCTGGCGGGTATTTGGAGAGAGGTGTGccct > 1:1173503/1‑34 (MQ=2)
aaTTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGc < 1:5103097/36‑1 (MQ=255)
aTTCCTGGCGGTTATTTGCAGACAGCTGCGCCAGCt > 1:7647005/1‑36 (MQ=255)
aTTCCTGGCGGTTATTGGCAGACAGCTGCGCCCGCt > 1:85647/1‑36 (MQ=255)
aTTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGCt < 1:1981390/36‑1 (MQ=255)
ttCCTGGCGGTTATTTGGAGACAGCTGTGCCCGCTc > 1:1973913/1‑36 (MQ=19)
ttCCTGGCGGTTATTTGCAGAGAGCTGCGCCAGATc > 1:481303/1‑36 (MQ=25)
tCCTGGCGGTTATTTGCAGAAAGCTGCGCAAGCCcc > 1:2433008/1‑36 (MQ=19)
ccTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCa < 1:937116/36‑1 (MQ=255)
cTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCAg < 1:426550/36‑1 (MQ=255)
gCGGTTATTGGCAGACAGCTGCGCCAGCTCCAGTtc < 1:1891704/36‑1 (MQ=255)
gtttAGTGGGAGACAGCTGCGCCAGCTCCAGTtcat < 1:890473/34‑1 (MQ=25)
ggTTATTTACAGACAGCTGCGGCCGCTCCAGTtcat < 1:5558762/36‑1 (MQ=19)
ggTTATTGGCAGATAGCTGCGCCAGCTCCAGTtcat > 1:7210693/1‑36 (MQ=255)
ggTTATTGGCAGACAGCTGCGCCAGCTCCAGTtcat < 1:75280/36‑1 (MQ=255)
ggTTATTGGCAGACAGCTGCGCCAGCTCCAGTtcat > 1:25612/1‑36 (MQ=255)
gattATTGGCAGACAGCTTCGCCAGCTCCAGTtcat < 1:7560816/34‑1 (MQ=37)
gTTATTGGCAGACAGCTGCGCCAGCTCCAGTtcatc < 1:5577172/36‑1 (MQ=255)
gTTATTGGCAGACAGCTGCGCCAGCTCCAGTtcatc < 1:7668834/36‑1 (MQ=255)
ttATTGGCAGACAGCTGCGCCAGCTCCAGTtcatca < 1:3158364/36‑1 (MQ=255)
ttATTGGCAGACAGCTGCGCCAGCTCCAGTtcatca > 1:5528304/1‑36 (MQ=255)
tATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCaa > 1:4545001/1‑36 (MQ=255)
tATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCaa > 1:4295481/1‑36 (MQ=255)
tATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCaa < 1:4866499/36‑1 (MQ=255)
aTTTGCATACAGCTGCGCCAGCTCCAGTTCATCAAc < 1:467187/36‑1 (MQ=25)
ttGGCAGACATCTGCGCCAGCTCCAGTTCATCAACg < 1:5794869/36‑1 (MQ=255)
ttGGCAGACAGCTGCGCCAGCTCCAGTTCATCAACg < 1:6594543/36‑1 (MQ=255)
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TCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCAACG > REL606/4366900‑4366968
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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