Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,485,450 | 0 | A→G | 7.1% | 0.8 ‑5.4 0.0 | 88 | 579 | ydcV | predicted spermidine/putrescine transporter subunit |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (8/1): ref base (30/49): total (38/50) | ||||||||||
Fisher's exact test strand distribution p-value = 4.56e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 108 total aligned reads displayed.
GTGTTGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAAT > REL606/1485415‑1485485
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gtgtTGCCGACTCTCAGTTTGGCGTTACTGGCagga < 1:5169970/36‑1 (MQ=37)
gtgtTGCCGAATCTCAGTTCGGCGTTACTGGCagga > 1:7659299/1‑36 (MQ=255)
tgtTGCCGAATCTCAGTTCGGCGTTACTGGCaggag < 1:6690163/36‑1 (MQ=255)
gtTGCCGAATCTCAGTTCGGCGTTACTGGCaggagg > 1:2961085/1‑36 (MQ=255)
gtTGCCGAATCTCAGTTCGCCGTTACTGGCaggggg > 1:3526795/1‑36 (MQ=37)
tGCCGAATCTCAGTTCGGCGTTACTGGCagggggga > 1:1481145/1‑34 (MQ=37)
tGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGaa < 1:7454896/36‑1 (MQ=255)
tGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGaa > 1:2513592/1‑36 (MQ=255)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGGGGGAt > 1:4600457/1‑36 (MQ=37)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGGGGAAt > 1:5594667/1‑36 (MQ=255)
gCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAAt < 1:4333834/36‑1 (MQ=255)
cGAATCTCAGTTCGGCGTTACTGGCAGGGGGAATGc > 1:2280138/1‑36 (MQ=255)
cGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGc < 1:325817/36‑1 (MQ=255)
cGAATCACAGTTCGGCGTTACGGGCAGGAGGAATGc < 1:7592458/36‑1 (MQ=38)
aaTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTg > 1:6133918/1‑36 (MQ=255)
aaTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTg > 1:1037915/1‑36 (MQ=255)
aTCTGAGTTCGGCGTTACTGGCAGGAGGAATGCTgg < 1:7238082/36‑1 (MQ=255)
aTCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTgg < 1:4290743/36‑1 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc > 1:6424998/1‑36 (MQ=255)
tctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGc > 1:2436434/1‑36 (MQ=255)
tctcAGTTCGGCGTTAATGGCAGGAGGGATGATGGc > 1:6585527/1‑36 (MQ=25)
tctcAGTTCCGTGTTTCTGGCAGGAGGAATGCTGGc < 1:4028539/36‑1 (MQ=25)
ctcAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCg > 1:6104782/1‑36 (MQ=255)
tcAGTTCGGCGTTACTGGCAGGGGGAATGCTGGGGt > 1:2519013/1‑36 (MQ=37)
tcAGTTCGGCGCTGCTGGCAGGAGGAATGCTGGCGt < 1:16251/36‑1 (MQ=37)
cAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGtt < 1:601983/36‑1 (MQ=255)
aGTTCGGCGTTACTGGCAGGAGGTATGATGGCGttt > 1:5984543/1‑36 (MQ=25)
aGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGttt < 1:6935419/36‑1 (MQ=255)
gTTCGGCGTTACTGGCCGGAGGAATGCTGGCGTTTg < 1:3243222/36‑1 (MQ=255)
gTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTg < 1:3808284/36‑1 (MQ=255)
gTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTg > 1:5509828/1‑36 (MQ=255)
gTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTg < 1:6694808/36‑1 (MQ=255)
gTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTg > 1:7434136/1‑36 (MQ=255)
ttCGGCGTTACTGGCAGGGGGAATTCTGGGGttttt > 1:4612080/1‑34 (MQ=18)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:7660457/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:1311197/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:6180341/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc > 1:7538553/1‑36 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:7521201/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc < 1:7436618/36‑1 (MQ=255)
ttCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGc > 1:716516/1‑36 (MQ=255)
tCGGCGTTACTGGCAGGGGGAATGCTGGCGTTTTcc > 1:3885348/1‑36 (MQ=37)
tCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGcc > 1:1175088/1‑36 (MQ=255)
cGGCGTTACTGGCAGGGGGAATGCTGGCGTTTGGCt > 1:1344954/1‑36 (MQ=25)
cGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCt < 1:5329566/36‑1 (MQ=255)
tgCGTTACTGGCAGGATGAATGCTGGCGTTTGCCtt < 1:1349133/35‑1 (MQ=255)
ggCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCtt < 1:4823763/36‑1 (MQ=255)
gggTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTg < 1:6277650/34‑1 (MQ=255)
cGTTACTGGCAGGAGGGATGCTGGCGTTTGCCtttt > 1:1809750/1‑34 (MQ=37)
cGTTACTGGCAGGAGGAATGCTGGCGTTTGCCtttt > 1:7156464/1‑34 (MQ=255)
cGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGt > 1:1265533/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc > 1:3276313/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc < 1:325433/36‑1 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc > 1:3594454/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc > 1:7188833/1‑36 (MQ=255)
gTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTc < 1:2719077/36‑1 (MQ=255)
gTTACTGGCAGGAGGAATGCAGGCGTTTGCCTTGTc < 1:3768308/36‑1 (MQ=255)
ttACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCg > 1:701931/1‑36 (MQ=255)
ttACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCg < 1:6521283/36‑1 (MQ=255)
ttACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCg > 1:5524547/1‑36 (MQ=255)
tACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGt < 1:5075699/36‑1 (MQ=255)
tACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGt < 1:6548684/36‑1 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTTGtt > 1:6393277/1‑36 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGtt > 1:3571944/1‑36 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGtt < 1:5472830/36‑1 (MQ=255)
aCTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGtt < 1:6547000/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:2098519/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:2884719/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:101208/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:1303129/36‑1 (MQ=255)
cTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTc < 1:4531513/36‑1 (MQ=255)
tGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCg < 1:5722593/36‑1 (MQ=255)
tGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCg < 1:5545971/36‑1 (MQ=255)
tGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCg < 1:3567218/36‑1 (MQ=255)
tGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCg < 1:4139061/36‑1 (MQ=255)
tGGCAGGAGGAATGATGGCGTTTGCCTTGTCGTTCg < 1:7381446/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:6450545/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:5117353/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:1337212/36‑1 (MQ=255)
ggCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGa < 1:3190212/36‑1 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt < 1:4002576/36‑1 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt < 1:3430322/36‑1 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt > 1:1853428/1‑36 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt < 1:297154/36‑1 (MQ=255)
gCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGAt > 1:1929693/1‑36 (MQ=255)
cAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATg > 1:4549843/1‑36 (MQ=255)
cAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATg > 1:60962/1‑36 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa > 1:7786727/1‑36 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:7834762/36‑1 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:2588508/36‑1 (MQ=255)
aggaggAATGCTGGCGTTTGCCTTGTCGTTCGATGa < 1:5274760/36‑1 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:321896/1‑36 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa > 1:167229/1‑36 (MQ=255)
ggaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaa < 1:7775405/36‑1 (MQ=255)
gaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaaa < 1:2112021/36‑1 (MQ=255)
gaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaaa > 1:1916988/1‑36 (MQ=255)
gaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaaa < 1:5356848/36‑1 (MQ=255)
gaggaATGCTGGCGTTTGCCTTGTCGTTCGATGaaa < 1:5857782/36‑1 (MQ=255)
aggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAat < 1:516120/36‑1 (MQ=255)
aggaATGCTGGCGTTTGCCTTGTCGTTCGATGAAat > 1:6045028/1‑36 (MQ=255)
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GTGTTGCCGAATCTCAGTTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAAT > REL606/1485415‑1485485
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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