Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 804,332 | A→G | 32.2% | E62G (GAA→GGA) | bioC → | predicted methltransferase, enzyme of biotin synthesis |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 804,332 | 0 | A→G | 32.2% | 3.1 ‑4.0 ‑0.0 | 21 | 185 | bioC | predicted methltransferase, enzyme of biotin synthesis |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (6/8): total (13/8) | ||||||||||
Fisher's exact test strand distribution p-value = 1.80e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.53e-01 |
TGTGGACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGCAGGTGACGGCCTTAGATCTCTCGC > REL606/804298‑804367
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tgtgGACCTGGCTGGATGAGCCGCCACTGGCGGGaa < 1:592105/36‑1 (MQ=255)
gtgGACCTGGCTGGATGAGCCGCCACTGGCGGGAAc > 1:5477400/1‑36 (MQ=255)
ggACCTGGCTGGATGAGCCGCCACTGGCGGGGACgg > 1:2838879/1‑35 (MQ=255)
gACCTGGCTGGATGAGCCGCCACTGGCGGGGACggc > 1:695387/1‑34 (MQ=37)
aCCTGGCTGGATGAGCCGCCACTGGCGGGGACggcc > 1:1106747/1‑33 (MQ=37)
aCCTGGCTGGATGAGCCGCCACTGGCGGGGACGGCa > 1:4852373/1‑36 (MQ=37)
gctggATGAGCCGCCACTGGCGGGGACGTTAcgcgg > 1:2566373/1‑35 (MQ=37)
ctggATGAGCCGCCACTGGCGGGAACGTCACGCGCa < 1:5022119/36‑1 (MQ=255)
gATGAGCCGCCACTGGCGGGGACGTCACGCGCAggg > 1:3108037/1‑35 (MQ=255)
gATGAGCCGCCACTGGCGGGGACGGCACGCGCCggg > 1:316283/1‑35 (MQ=25)
gATGAGCCGCCACTGGCGGGAAAGTCCCGCGCAggg > 1:3922262/1‑35 (MQ=37)
gAGCCGCCCCTGGCGGGAACGTCACGCGCAGGTGAc < 1:3240707/36‑1 (MQ=255)
gccgccACTGGCGGGAACGTCACGCGGAGGGGACgg > 1:4420767/1‑36 (MQ=37)
cgccACTGGCGGGAACGTCACGCGCAGGTGACGGcc < 1:4416190/36‑1 (MQ=255)
ccACTGGCGGTAACGTCACGCGCAGGTGACGGCCtt < 1:2771689/36‑1 (MQ=255)
cACTGGCGGGAACGTCACCCGCAGGTGACGGCCTTa < 1:5624744/36‑1 (MQ=255)
tGGCGGGAACGTCACGCGCAGGTGACGGCCTTAGAt < 1:5610552/36‑1 (MQ=255)
gCGGGAACGTCACGCGCAGGTGACGGCCTTAGAtct > 1:2501174/1‑36 (MQ=255)
gCGGGAACGTCACGCGCAGGAGACGGCCTTAGAtct > 1:1619256/1‑36 (MQ=255)
gggAACGTCACGCGCAGGTGACGGCCTTAGAtctct > 1:4285032/1‑36 (MQ=255)
ggAACGTCACGCGCAGGTGACGGCCTTAGAtctctc < 1:3559359/36‑1 (MQ=255)
gAACGTCACGCGCAGGTGACGGCCTTAGATCTCTcg < 1:1670274/36‑1 (MQ=255)
aaCGTCACGCGCCGTTGAGGGCCTTAGATCTCTcgc < 1:2719936/36‑1 (MQ=37)
aaCGTCACGCGCAGGTGACGGCCTTAGATCTCTcgc < 1:5434026/36‑1 (MQ=255)
aaCGTCACGCGCAGGTGACGGCCTTAGATCTCTcgc > 1:1827022/1‑36 (MQ=255)
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TGTGGACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGCAGGTGACGGCCTTAGATCTCTCGC > REL606/804298‑804367
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 12 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
|