New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 103607327 (0.510)9 (0.170) 7/62 NT 26.9% intergenic (+45/+31) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2540943 22 (0.370)coding (38/1290 nt) uraA uracil transporter

GTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAG  >  REL606/1036038‑1036108
                                   |                                   
gtaaGTTCAATTTAATAAAGGCAAAAAAAACCCCgc                                     <  1:7745322/33‑1 (MQ=37)
gTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC                                     <  1:605005‑M1/36‑1 (MQ=255)
gTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC                                     >  1:3569447‑M1/1‑36 (MQ=255)
 tCAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                                    <  1:6497452/36‑1 (MQ=255)
  cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                                   <  1:1400268/36‑1 (MQ=255)
  cAGTTCAATTTACTAAAGGCAAAAAAAACCCCgcag                                   >  1:7158764/1‑36 (MQ=255)
  cAGTACAATTTACTAAAGGCAAAAAAAACCCCgcag                                   <  1:5186833/36‑1 (MQ=255)
   aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                                  <  1:3980374/36‑1 (MQ=255)
    gTTCAATTTACTAAAGGCAAAAAAAACCCCgcagca                                 <  1:3276531/36‑1 (MQ=255)
     ttCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                                <  1:3068817/36‑1 (MQ=255)
     ttCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                                <  1:3149306/36‑1 (MQ=255)
      tCAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                               <  1:1455996/36‑1 (MQ=255)
      tCAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                               >  1:3996677/1‑36 (MQ=255)
        aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                             >  1:2230022/1‑36 (MQ=255)
         aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                            <  1:3284607/36‑1 (MQ=255)
            tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt                         >  1:7925089/1‑36 (MQ=255)
             aCTAAAGGCAAAAAAAACCCCTCAGCAGCGGGGttt                        <  1:5708768/36‑1 (MQ=255)
               tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                      <  1:2377050/36‑1 (MQ=255)
               tAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttttt                      >  1:6409822/1‑36 (MQ=255)
                aaaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTc                     >  1:6767845/1‑36 (MQ=255)
                 aaGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCt                    <  1:1283831/36‑1 (MQ=255)
                  aGGCAAAAAAAACCCCGCAGCTGCGGGGTTTTTCTa                   >  1:7259052/1‑36 (MQ=255)
                   ggCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAc                  <  1:5726240/36‑1 (MQ=255)
                     cAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCa                >  1:5008416/1‑36 (MQ=255)
                      aaaaaaaaCCCCGCcacttttacagacaatcccgct               <  1:5787406‑M1/36‑23 (MQ=255)
                       aaaaaaaCCCCGCcacttttacagacaatcccgctt              <  1:370764‑M1/36‑24 (MQ=255)
                        aaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc             <  1:3408529/36‑1 (MQ=255)
                        aaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGAc             >  1:4636963/1‑36 (MQ=255)
                          aaacCCCCGCcacttttacagacaatcccgcttagt           <  1:5305051‑M1/36‑27 (MQ=255)
                           aacccccgccacttttacagacaatcccgcttagtt          <  1:6048664‑M1/33‑28 (MQ=255)
                           aaaCCCCGCcacttttacagacaatcccgcttagtt          <  1:13431‑M1/36‑28 (MQ=255)
                            aaCCCCGCcacttttacagacaatcccgcttagttt         <  1:4628786‑M1/36‑29 (MQ=255)
                            aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga         >  1:5120605/1‑36 (MQ=255)
                             agcccgccacttttacagacaatcccgcttagtttg        <  1:4689958‑M1/34‑30 (MQ=255)
                              ccccGCcacttttacagacaatcccgcttagtttgc       <  1:1845246‑M1/36‑31 (MQ=255)
                              ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc       >  1:5078908/1‑36 (MQ=255)
                               cccGCcacttttacagacaatcccgcttagtttgca      <  1:405990‑M1/36‑32 (MQ=255)
                                ccGCcacttttacagacaatcccgcttagtttgcaa     >  1:7323040‑M1/1‑4 (MQ=255)
                                 cGCcacttttacagacaatcccgcttagtttgcaac    <  1:3173791‑M1/36‑34 (MQ=255)
                                 cGCcacttttacagacaatcccgcttagtttgcaac    <  1:7044676‑M1/36‑34 (MQ=255)
                                  gcagcaGCGGGGTTTTTCTACCAGACGAGAACTTaa   >  1:3738770/1‑36 (MQ=255)
                                  gcagcaGCGGGGTTTTTCTACCAGACGAGAACTTaa   >  1:6956842/1‑36 (MQ=255)
                                  gCcacttttacagacaatcccgcttaggttgcaaca   >  1:4151910‑M1/1‑2 (MQ=255)
                                   ccacttttacagacaatcccgcttagtttgcaacat  <  1:2916617‑M1/36‑36 (MQ=255)
                                   cagcagCGGGGTTTTTCTACCAGACGAGAACTTAAg  <  1:6432287/36‑1 (MQ=255)
                                   cagcagAGGGGTTTTTCTACCAGACGAGAACTTAAg  >  1:6333222/1‑36 (MQ=255)
                                   |                                   
GTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAG  >  REL606/1036038‑1036108

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG