Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,131,571 | T→A | 5.7% | intergenic (‑230/+70) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,131,571 | 0 | T→A | 5.7% | 2.6 ‑3.2 ‑0.9 | 60 | intergenic (‑230/+70) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (24/32): total (28/32) | ||||||||||
Fisher's exact test strand distribution p-value = 4.20e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.35e-01 |
CCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGTAAA > REL606/2131536‑2131605
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ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt < 1:7377388/36‑1 (MQ=255)
ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt < 1:6139036/36‑1 (MQ=255)
ccAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGt > 1:384296/1‑36 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTc > 1:7431136/1‑36 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTc < 1:6873381/36‑1 (MQ=255)
cAGCGCTGCGTAGGCATGATAAGACGCTTCAGAGTc > 1:7498595/1‑36 (MQ=255)
cAGCGCTGCGTAGGCANGATAAGACGCTTCAGCGTc < 1:2140142/36‑1 (MQ=255)
cgcTGCGTAGGCATGATAAGACGCTTCAGCGTCGCa < 1:3615096/36‑1 (MQ=255)
cTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATc > 1:1103257/1‑36 (MQ=255)
tGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCa < 1:821657/36‑1 (MQ=255)
tGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCa > 1:6804786/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:6638387/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:1205812/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAg > 1:2372831/1‑36 (MQ=255)
gCGTAGGCATGATAAGACGCTTCAGACACGCATccg > 1:2448681/1‑34 (MQ=17)
gTAGGCATGATAAGACCATTCAGCGTCGCATAAGGc > 1:5749824/1‑36 (MQ=14)
tAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCa < 1:1224943/36‑1 (MQ=38)
tAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCa > 1:4335882/1‑36 (MQ=38)
aGGCATGATAAGACGCTTCAGCGTCGCATCAGGCAt < 1:692875/36‑1 (MQ=38)
gCATGATAAGACGCTTCAGCGTCGCATCAGGCATAg < 1:3764386/36‑1 (MQ=255)
gCATGATAAGACGCTTCAGCGTCGCATCAGGCATAg < 1:6671208/36‑1 (MQ=255)
cATGATAAGATGCNTCAGCGTCGCATCAGGCATAgg > 1:4428406/1‑36 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6846999/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6604558/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:1843797/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:6123701/36‑1 (MQ=255)
tGATAAGACGCTTCAGCGTCGCATCAGGCATAGGtt < 1:4369716/36‑1 (MQ=255)
aTAAGACGCTTCTGCGTCGCATCAGGCATAGGTTGc < 1:1498379/36‑1 (MQ=255)
aTAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGc > 1:5811566/1‑36 (MQ=255)
aaGACGCTTCAGCGTCGCATCAGGCATAGGTTGACg > 1:2283650/1‑36 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg < 1:6670155/36‑1 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg < 1:4356025/36‑1 (MQ=255)
aGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCgg > 1:4516250/1‑36 (MQ=255)
gACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGa < 1:2109609/36‑1 (MQ=255)
tcGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAt > 1:1664109/2‑36 (MQ=17)
aCGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGAt > 1:2984003/1‑36 (MQ=255)
aCGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGAt < 1:3955704/36‑1 (MQ=255)
cGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATg < 1:6665006/36‑1 (MQ=255)
cGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAta > 1:6432677/1‑35 (MQ=17)
cGCGTCAGCGACGCATCAGGCATCGGCTGGGGGAta > 1:4501669/1‑35 (MQ=17)
cctCAGCGTCGCATCAGGCATAGGTTGCCGGATgcg < 1:5001276/34‑1 (MQ=255)
cTTCAGCTTCGCATCAGGCATAGGTTGCCGGATgcg < 1:4814064/36‑1 (MQ=255)
cTTCAGCGTCGCATCAGGCATAGGTTGCCGGATgcg < 1:5941730/36‑1 (MQ=255)
cTTCAGCGTCGCATCAGGCATAGGTTGCCGGATgcg > 1:6896467/1‑36 (MQ=255)
ttCAGCGTCGCATCAGGCATAGGTTGCCGGATgcgg > 1:797325/1‑36 (MQ=255)
ttCAGCGTCGCATCAGGCATAGGTTGCCGGATgcgg > 1:5149809/1‑36 (MQ=255)
ttCAGCGTCGCATCAGGCAGAGGTTGCCGGATgcgg > 1:384614/1‑36 (MQ=255)
tgcAGCGTCGCATCAGGCATGGGGTGCCGGATgcgg < 1:3180988/34‑1 (MQ=11)
tCAGCGTCGCATCAGGCATAGGTTGCCGGATgcggc < 1:5766060/36‑1 (MQ=255)
tCAGCGTCGCATCAGGCATAGGTTGCCGGATgcggc > 1:59192/1‑36 (MQ=255)
tCAGCGTCGCATCAGGCATAGGTTGCCGGATgcggc < 1:2509702/36‑1 (MQ=255)
tCAGCGTCGCATCAGGCATAGGTTGCCGGATgcggc > 1:1734859/1‑36 (MQ=255)
tCAGCGTCGCATCAGGCATAGGTTGCCGGATgaggc > 1:5710470/1‑36 (MQ=255)
cAGCGTCGCATCAGGCATAGGTTGCCGGATgcggcg > 1:6654778/1‑36 (MQ=255)
aGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGt < 1:1871282/36‑1 (MQ=40)
aGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGt < 1:4773041/36‑1 (MQ=40)
aGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGt > 1:3998741/1‑36 (MQ=40)
aGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGt < 1:1609486/36‑1 (MQ=40)
gCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGTa < 1:4648616/36‑1 (MQ=255)
gCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGTa < 1:4823808/36‑1 (MQ=255)
gCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGTa < 1:5713506/36‑1 (MQ=255)
gTCGCATCAGGCATAGGTTGCCGGATGCGGCGTaaa > 1:4946421/1‑36 (MQ=255)
gTCGCATCAGGCATAGGTTGCCGGATGCGGCGTaaa < 1:54143/36‑1 (MQ=255)
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CCAGCGCTGCGTAGGCATGATAAGACGCTTCAGCGTCGCATCAGGCATAGGTTGCCGGATGCGGCGTAAA > REL606/2131536‑2131605
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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