Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,448,149 | A→T | 12.8% | *413K (TAA→AAA) | hofQ ← | predicted fimbrial transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,448,149 | 0 | A→T | 12.8% | 3.4 ‑2.2 0.0 | 50 | 1237 | hofQ | predicted fimbrial transporter |
Reads supporting (aligned to +/- strand): new base (6/1): ref base (21/22): total (27/23) | ||||||||||
Fisher's exact test strand distribution p-value = 1.07e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGCGTAAAAACATTACCGCTTTTACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATAAACACCA > REL606/3448116‑3448184
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aGCGTAAAAACATTACCGCTTTTACGGCTGTTTACt < 1:1919911/36‑1 (MQ=255)
gCGTAAAAACATTACCGCTTTTACGGCTGTTTACTc < 1:1564847/36‑1 (MQ=255)
gTAAAAACATTACCGCTTTTACNGCTGTTTACTCAc < 1:2584027/36‑1 (MQ=255)
tAAAAACATTACCGCTTTTACGGCTGTTTACTCACt < 1:4779423/36‑1 (MQ=255)
tAAAAACATTACCGCTTTTACGGCTGTTTACTCACt < 1:4233609/36‑1 (MQ=255)
tAAAAACATTACCGCTTTTACGGCTGTTTACTCACt < 1:3962557/36‑1 (MQ=255)
tAAAAACATTACCGCTTTTACGGCTGTTTACTCACt < 1:6447702/36‑1 (MQ=255)
aaaaaCATTACCGCTTTTACGGCTGTTTACTCACTg < 1:5955515/36‑1 (MQ=255)
aaaaaCATTACCGCTTTTACGGCTGGTTTCTCCCtt > 1:3049587/1‑35 (MQ=21)
aaaaCATTACCGCTTTTACGGCTGTTTACTCCCTgg > 1:6539837/1‑36 (MQ=255)
aaaCATTACCGCTTTTACGGCTGTTTACTCACTGGa < 1:2311673/36‑1 (MQ=255)
aaaCATTACCGCTTTTACGGCTGGTTTCTCTCTggt > 1:6209834/1‑35 (MQ=21)
aaaCATTACCGCTTTTACGGCTGGTTACTCACttta > 1:1690156/1‑33 (MQ=37)
aaCATTACCGCTTTTACGGCTGTTTACTCACTGGaa < 1:1657100/36‑1 (MQ=255)
atgaCCGCGTTTACGGCTGTTTACTCACTGGAAAcc < 1:7478585/33‑1 (MQ=37)
aTTACCGCTTTTACGGCTGTTTTCTTCCTGGGAAca > 1:4607048/1‑35 (MQ=16)
aTTACCGCTTTTACGGCTGGTTTCTTCCTTGAAAcc > 1:1758215/1‑36 (MQ=12)
tACCGCTTTTACGGCTGTTTTTTTACTGGAAAACaa > 1:6167094/1‑35 (MQ=16)
tACCGCTTTTACGGCTGTTTACTCACTTGAAAACAg > 1:7428450/1‑36 (MQ=37)
aCCGCTTTTACGGCTGTTTTCTCACTTGAAACCAGt > 1:5490124/1‑36 (MQ=37)
aCCGCTTTTACGGCTGTTTACTCACTGGAAACCAGt < 1:6597273/36‑1 (MQ=255)
ccGCTTTTACGGCTGTTTACTCACTGGAAACCAGTc < 1:1997353/36‑1 (MQ=255)
ccGCTTTTACGGCTGTTTACTCACTGGAAACCAGTc < 1:715395/36‑1 (MQ=255)
ccGCTTTTACGGCTGTTTACTCACTGGAAACCAGTc < 1:5504359/36‑1 (MQ=255)
cGCTTTTACGGCTGTTTTCTCACTGGAAACCAGTCg < 1:530806/36‑1 (MQ=255)
gCTTTTACGGCTGTTTATTCACTTGAAAACAATCGt > 1:4223294/1‑36 (MQ=16)
gCTTTTACGGCTGGTTATTTACTTTAAACCAGTCGt > 1:1880382/1‑36 (MQ=16)
cTTTTACGGCTGTTTACTCACTGGAAACCAGTCGTg > 1:5953721/1‑36 (MQ=255)
cTTTTACGGCTGGTTAATTCCTGGAAACCAGTCGTg > 1:4098104/1‑36 (MQ=16)
ttttACGGCTGTTTACTCCCTGGAAACCAGTCGTgg > 1:1011725/1‑36 (MQ=255)
ttttACGGCTGTTTACTCACTTGAAACCAGTCGTgg > 1:868329/1‑36 (MQ=255)
tttACGGCTGTTTACTCACTGGAAACCAGTCGTGGc < 1:7169882/36‑1 (MQ=255)
ttACGGCTGTTTACTCACTGGAAACCAGTCGTGGCg < 1:2611449/36‑1 (MQ=255)
tACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGt < 1:705592/36‑1 (MQ=255)
cGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTGa > 1:4489131/1‑36 (MQ=255)
ggCTGTTTACTCACTGGAAGCCAGTCGTGGCGTGAt < 1:4119452/36‑1 (MQ=255)
ggCTGTTTACTCACTGGAAACCAGTCGTGGCGTGAt > 1:2743453/1‑36 (MQ=255)
ggCTGTTTACTCACTGGAAACCAGTCGTGGCGTGAt > 1:2230898/1‑36 (MQ=255)
gCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATa > 1:5032649/1‑36 (MQ=255)
gCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATa > 1:4112168/1‑36 (MQ=255)
cTGTTTACTCACTGGAAACCAGTCGTGGCGTGATaa > 1:1533589/1‑36 (MQ=255)
tGTTTACTCACTGGAACCTAGTCGTGGCGTGATaaa < 1:7433442/36‑1 (MQ=37)
tGTTTACTCACTGGAAACCAGTCGTGGCGTGATaaa > 1:6808264/1‑36 (MQ=255)
tGTTTACTCACTGGAAACCAGTCGTGGCGTGATaaa > 1:611023/1‑36 (MQ=255)
gTTTACTCACTGGAAACCAGTCGTGGCGTGATAAac > 1:5823661/1‑36 (MQ=255)
tttACTCACTGGAAACCAGTCGTGGCGTGATAAaca < 1:119123/36‑1 (MQ=255)
ttACTCACTGGAAACCAGTCGTGGCGTGATAAacac > 1:7342858/1‑36 (MQ=255)
ttACTCACTGGAAACCAGTCGTGGCGTGATAAacac > 1:942804/1‑36 (MQ=255)
tACTCACTGGAAACCAGTCGTGGCGTGATAAAcacc > 1:6663749/1‑36 (MQ=255)
tACTCACTGGAAACCAGTCGTGGCGTGATAAAcacc < 1:3348423/36‑1 (MQ=255)
aCTCACTGGAAACCAGTCGTGGCGTGATAAAcacca < 1:108730/36‑1 (MQ=255)
aCTCACTGGAAACCAGTCGTGGCGTGATAAAcacca > 1:4451721/1‑36 (MQ=255)
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AGCGTAAAAACATTACCGCTTTTACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATAAACACCA > REL606/3448116‑3448184
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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