Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,597,450 | C→A | 20.9% | E411* (GAA→TAA) | ydfI ← | predicted mannonate dehydrogenase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,597,450 | 0 | C→A | 20.9% | 5.5 ‑3.9 0.0 | 56 | 1231 | ydfI | predicted mannonate dehydrogenase |
Reads supporting (aligned to +/- strand): new base (1/13): ref base (18/24): total (19/37) | ||||||||||
Fisher's exact test strand distribution p-value = 2.08e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAGTGGGTCACTGATTTCTATCGGATTTTCCTGTTCATCAACACCACCGACATAACGCATCCAACCCGCGA > REL606/1597415‑1597485
|
cAGTGGGTCACTGATTTCTATCGGATTTTCCTGTtc > 1:2556594/1‑36 (MQ=255)
cAGTGGGTCACTGATTTCTATCGGATTTTCCTGTtc < 1:5825694/36‑1 (MQ=255)
cAGTGGGTCACTGATTTCTATCGGATTTTCCTGTtc < 1:88923/36‑1 (MQ=255)
gTGGGTCACTGATTTCTATCGGATTTTCCTGTtcat < 1:4764707/36‑1 (MQ=255)
gggTCACTGATTTCTATCGGATTTTCCTGTtcatca < 1:1297308/36‑1 (MQ=255)
gggTCACTGATTTCTATCGGATTTTCCTGTtcatca < 1:4884722/36‑1 (MQ=255)
gTCACTGATTTCTATCGGATTTTCCTGTTCATCAac < 1:151073/36‑1 (MQ=255)
gTCACTGATTTCTATCGGATTTTCCTGTTCATCAac > 1:6306383/1‑36 (MQ=255)
gTCACTGATTTCTATCGGATTTTCCTGTTCATCAac < 1:5115321/36‑1 (MQ=255)
gTCACTGATTTCTATCGGATTTTCCTGTTCATCAac < 1:3062619/36‑1 (MQ=255)
tCACTGATTTCTATCGGATTTTCCTGTTCATCAaca < 1:6175082/36‑1 (MQ=255)
tCACTGATTTCTATCGGATTTTCCTGTTCATCAaca > 1:249778/1‑36 (MQ=255)
cccTGATTTCTATCGGATTTTCCTGTTCATCAacac < 1:5589107/34‑1 (MQ=255)
cTGATTTCTATCGGATTTTCCTGTTCATCAAcacca > 1:5946937/1‑36 (MQ=255)
tGATTTCTATCGGATTTTCCTGTTCATCAAcaccac > 1:1297337/1‑36 (MQ=255)
tGATTTCTATCGGATTTTCCTGTTCATCAAcaccac < 1:703693/36‑1 (MQ=255)
gATTTCTATCGGATTTTCCTGTTCATCAACaccacc > 1:4944883/1‑36 (MQ=255)
gATTTCTATCGGATTTTCCTGTTCATCAACaccacc > 1:4137355/1‑36 (MQ=255)
tttCTATCGGATTTTCCTGTTCATCAACACCACCGa < 1:2044293/36‑1 (MQ=255)
tttCTATCGGATTTTCCTGTTCATCAACACCACCGa < 1:1996375/36‑1 (MQ=255)
ttCTATCGGATTTTCCTGTTCATCAACACCACCGAc < 1:3625833/36‑1 (MQ=255)
tCTATCGGATTTTCCTGTTCATCAACACCACCGACa > 1:7344354/1‑36 (MQ=255)
tCTATCGGATTTTCCTGTTCATCAACACCACCGACa > 1:3165799/1‑36 (MQ=255)
tATCGGATTTTCCTGTTCATAAACACCACCGACATa < 1:5380710/36‑1 (MQ=255)
tATCGGATTTCCCTGTTAATCAACACCACCGACATa < 1:3915613/36‑1 (MQ=37)
aTCGGATTTTCCTGTTCATCAACACCACCGACATaa > 1:3577060/1‑36 (MQ=255)
aTCGGATTTTCCTGTTCATAAACACCACCGACATaa < 1:518107/36‑1 (MQ=255)
aTCGGATTTTCCTGTTAATCAACACCACCGACATaa > 1:12968/1‑36 (MQ=255)
aTCGAATTTTCCTGTTAATCAACACCACCGACATaa < 1:3349980/36‑1 (MQ=37)
tCGGATTTTCCTGTTAATAAACACCACCGACATAAc < 1:6619789/36‑1 (MQ=37)
tCGAATTTTCCTGTTAAAAAACACCACCGACATAAc < 1:4631379/36‑1 (MQ=19)
cGGATTTTCCTGTTCATCAACACCACCGACATAACg < 1:2252191/36‑1 (MQ=255)
cGGATTTTCCTGTTAATAAACACCACCGACATAACg < 1:4656679/36‑1 (MQ=37)
ggcttttCCTGTTAATCAACACCACCTCCATAACGc < 1:6554524/33‑1 (MQ=16)
gATTTTCCTGTTCATCAACACCACCGACATAACGCa < 1:1094113/36‑1 (MQ=255)
aTTTTCCTGTTCATAAACACCACCGACATAACGCAt < 1:7223482/36‑1 (MQ=255)
aTTTTCCTGTTAATAAACACCACCGACATAACGCAt < 1:4763629/36‑1 (MQ=38)
ttttCCTGTTCATCAACACCACCGACATAACGCATc > 1:1507253/1‑36 (MQ=255)
ttttCCTGTTCATAAACACCACCGACATAACGCATc < 1:7085297/36‑1 (MQ=255)
ttttCCTATTCATCAACACCACCGACATAACGCATc < 1:5104738/36‑1 (MQ=255)
tttCCTGTTCATCAACACCACCGACATAACGCATcc > 1:6649080/1‑36 (MQ=255)
tttCCTGTTCATCAACACCACCGACATAACGCATcc > 1:5861350/1‑36 (MQ=255)
tttCCTGTTCAAAAACACCACCGACATAACGCATcc < 1:1994703/36‑1 (MQ=37)
ttcccTGTTCATAAACACCCCCGACATAACGCATcc < 1:2581768/33‑1 (MQ=25)
ttCCTGTTCATAAACACCACCGACATAACGCATCCa < 1:810660/36‑1 (MQ=255)
ttCCTGTTCATAAACACCACCGACATAACGCATCCa < 1:1798974/36‑1 (MQ=255)
ttCCTGTTCATAAACACCACCGACATAACGCATCCa < 1:3519011/36‑1 (MQ=255)
ttCCTGTTAATCAACACCACCGACATAACGCATCCa < 1:7337575/36‑1 (MQ=255)
ttCCTGTTAAAAAACACCACCGACATAACGCATCCa < 1:1462462/36‑1 (MQ=25)
tCCTGTTAATCAACACCACCGACATAACGCATCCaa < 1:3684344/36‑1 (MQ=255)
tCCTGTTAATAAAAACAACCGACATAACGCATCCaa < 1:7254885/36‑1 (MQ=19)
tCCTATTAAACAACACCACCGACATAACGCATCCaa < 1:3764287/36‑1 (MQ=37)
ccTGTACAAAAACACCACCGACATAACGCATCCAAc < 1:4862233/36‑1 (MQ=25)
ttttCAACAAAACCACCGACATAACGCATCCAAccc < 1:427820/34‑1 (MQ=37)
tGTTCATCAACACCACCGACATAACGCATCCAAccc > 1:2972941/1‑36 (MQ=255)
tGTTCATCAACACCACCGACATAACGCATCCAAccc > 1:4169729/1‑36 (MQ=255)
tGTTCATCAACAACACCGACATAACGCATCCAAccc > 1:1954272/1‑36 (MQ=255)
tGTTCACCAACACCACCGACATAACGCATCCAAccc < 1:642463/36‑1 (MQ=255)
tGTTAAACAACACCACCGACATAACGCATCCAAccc < 1:6382181/36‑1 (MQ=37)
gTTCATCAACACCACCGACATAACGCATCCAACCcg > 1:1005040/1‑36 (MQ=255)
ttCATCAACACCACCGACATAACGCATCCAACCcgc > 1:7428291/1‑36 (MQ=255)
ttCATCAACACCACCGACATAACGCATCCAACCcgc > 1:4087233/1‑36 (MQ=255)
tcatcaACACCACCGACATAACGCATCCAACCcgcg > 1:755200/1‑36 (MQ=255)
catcaACACCACCGACATAACGCCTCCAACCCGCGa > 1:5318103/1‑36 (MQ=255)
catcaACACCACCGACATAACGCATCCAACCCGCGa > 1:3940621/1‑36 (MQ=255)
|
CAGTGGGTCACTGATTTCTATCGGATTTTCCTGTTCATCAACACCACCGACATAACGCATCCAACCCGCGA > REL606/1597415‑1597485
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|