Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,756,5880C→T11.0% 4.8 ‑9.0 0.077299ygbJpredicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Reads supporting (aligned to +/- strand):  new base (10/0):  ref base (24/43):  total (34/43)
Fisher's exact test strand distribution p-value = 1.20e-04
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

ACAACATCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGAAATTG  >  REL606/2756553‑2756623
                                    |                                   
acaacaTCTGAAACCCGGTACGGCAGTAA.TGGTttc                                     <  1:2966140/36‑1 (MQ=255)
acaacaTCTGAAACCCGGTACGGCAGTAA.TGGTttc                                     >  1:1619198/1‑36 (MQ=255)
acaacaTCTGAAACCCGGTACGGCAGGGA.TGGTttc                                     >  1:4060988/1‑36 (MQ=37)
acaacaTCTGAAACCCGGTACGGCAGGCA.TTGTttc                                     >  1:4870364/1‑36 (MQ=25)
 caacaTCTGAAACCCGGTACGGCAGTAA.TGGTttct                                    <  1:2583155/36‑1 (MQ=255)
 caacaTCTGAAACCCGGTACGGCAGTAA.TGGTttct                                    <  1:5480769/36‑1 (MQ=255)
  aacaTCTGAACCCCGGTACGGCAGTAA.TGGTttctt                                   <  1:3374522/36‑1 (MQ=255)
  aacaTCTGAAACCCGGTACGGCAGTTA.TTGTttttt                                   >  1:2491616/1‑36 (MQ=25)
  aacaTCTGAAACCCGGTACGGCAGTAA.TGGTttctt                                   <  1:291067/36‑1 (MQ=255)
  aacaTCTGAAACCCGGTACGGCAGTAA.TGGTttctt                                   <  1:1567986/36‑1 (MQ=255)
  aacaTCTGAAACCCGGTACGGCAGCAA.TTGTttttt                                   >  1:928114/1‑36 (MQ=25)
   acaTCTGAAGCCCGTTACGGCCGTAA.TGGTttcttc                                  <  1:1573884/36‑1 (MQ=25)
   acaTCTGAAACCCGGTTCGGCAGTAA.TGGTttcttc                                  <  1:5442449/36‑1 (MQ=255)
   acaTCTGAAACCCGGTACGGCAGTTA.CGGTttcctt                                  >  1:4460162/1‑33 (MQ=25)
   acaTCTGAAACCCGGTACGGCAGTAA.TGGTttcttc                                  <  1:5883705/36‑1 (MQ=255)
   acaTCTGAAACCCGGTACGGCAGGAA.TGGGttcttc                                  >  1:1332120/1‑36 (MQ=37)
    caTCTGAACCCCGGTACGGCAGTAA.TGGTTTCTTcc                                 <  1:3575310/36‑1 (MQ=255)
    caTCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTcc                                 <  1:3304065/36‑1 (MQ=255)
    caTCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTcc                                 <  1:1432108/36‑1 (MQ=255)
    caTCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTcc                                 <  1:5859887/36‑1 (MQ=255)
    caTCTGAAACCCGGTACGGCAGTAA.TGGGttctttc                                 >  1:4199695/1‑34 (MQ=37)
    caTCTGAAACCCGGCACGGCAGTAA.TGGTTTTTTcc                                 >  1:4451687/1‑36 (MQ=37)
     aTCTGAAGCCCGGTACGGCAGTAA.TGGTTTCTTCCa                                <  1:508648/36‑1 (MQ=255)
     aTCTGAAACCCGGTACGGCAGGAA.TTGTttttttcc                                >  1:2861463/1‑33 (MQ=16)
     aTCTGAAACCCGGTACGGCAGGAA.TGGTttttttcc                                >  1:4045622/1‑33 (MQ=25)
      tCTGAAACCCGGTACGGCAGTAA.TGGTTTTTTcccc                               >  1:5247699/1‑34 (MQ=38)
      tCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCAc                               >  1:1427369/1‑36 (MQ=255)
      tCTGAAACCCGGTACGGCAGGAAGTGGTTTTTTccc                                >  1:1297591/1‑35 (MQ=16)
      tCTGAAACCCGGTACGGCAGGAA.AGGTtttttctcc                               >  1:4791044/1‑33 (MQ=16)
       cTGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACt                              >  1:4968746/1‑36 (MQ=255)
       cTGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACt                              <  1:1897044/36‑1 (MQ=255)
        tGAAACCCGGTACGGCAGTAA.TGGTTTTTTCCCCTa                             >  1:749265/1‑36 (MQ=37)
        tGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTa                             >  1:5869778/1‑36 (MQ=255)
        tGAAACCCGGTACGGCAGGAA.TGGGTTTTTTCACtt                             >  1:1306062/1‑35 (MQ=16)
         gAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTAt                            <  1:3043542/36‑1 (MQ=255)
         gAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTAt                            <  1:4079393/36‑1 (MQ=255)
         gAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTAt                            <  1:2513019/36‑1 (MQ=255)
          caaCCAGGTCCGGCAGTAA.TGGTTTCTTCCACTATc                           <  1:5374225/35‑1 (MQ=37)
          aaaCCCGGTACGGCAGTAA.TGGTTTCTTCCACTATc                           <  1:2305724/36‑1 (MQ=255)
          aaaCCCGGTACGGCAGTAA.TGGTTTCTTCCACTATc                           <  1:53801/36‑1 (MQ=255)
          aaaCCCGGTACGGCAGGAA.TGGTTTTTTTCTCTATc                           >  1:5054793/1‑36 (MQ=19)
           aaCCCGGTACGGCAGTAA.TGGTTTTTTTCACTAttc                          >  1:670746/1‑34 (MQ=37)
           aaCCCGGTACGGCAGTAA.TGGTTTCTTCCCCTATCg                          >  1:4541233/1‑36 (MQ=255)
            aCCCGGTACGGCAGTAA.TGGTTTCTTCCTCTAtttc                         >  1:3108847/1‑33 (MQ=37)
            aCCCGGTACGGCAGTAA.TGGTTTCTTCCACTATCGc                         <  1:2555216/36‑1 (MQ=255)
            aCCCGGTACGGCAGTAA.TGGTTTCTTCCACTATCGc                         <  1:3912907/36‑1 (MQ=255)
            aCCCGGTACGGCAGTAA.TGGGTTCTTACACTATCgg                         >  1:4130291/1‑35 (MQ=37)
             cccGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCt                        <  1:3067282/36‑1 (MQ=255)
             cccGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCt                        <  1:344390/36‑1 (MQ=255)
             cccGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCt                        <  1:1894954/36‑1 (MQ=255)
             cccGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCt                        <  1:5558458/36‑1 (MQ=255)
             cccGGTACGGCAGGTA.TGGGTTTTTTCACCATCCCt                        >  1:4211464/1‑36 (MQ=0)
              ccGGTACGTCAGTAA.TGGTTTCTTCCACTATCGCTa                       <  1:3719914/36‑1 (MQ=255)
                ggTACGGCAGTTA.TGGTTTTTTTCCCTATCGCTTGt                     >  1:5539446/1‑36 (MQ=16)
                 gTACGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTg                    <  1:3650622/36‑1 (MQ=255)
                   aCGGCAGTAA.TGGTTTCTTCCACTATCTCTAGTGCt                  >  1:1861362/1‑36 (MQ=255)
                   aCGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCt                  <  1:681700/36‑1 (MQ=255)
                    cGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTg                 <  1:4016012/36‑1 (MQ=255)
                    cGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTg                 <  1:4451598/36‑1 (MQ=255)
                    cGGCAGGAA.TGGTTTCTTCCACTATCGCTAGTGCtc                 >  1:5365123/1‑35 (MQ=255)
                     gtcAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGa                <  1:1591543/34‑1 (MQ=255)
                     gtcAGTAA.TGGTTTCTTCCACCATCGCTAGTGCTGa                <  1:5419059/34‑1 (MQ=25)
                     ggCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGa                <  1:5084423/36‑1 (MQ=255)
                     ggCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGa                >  1:1151245/1‑36 (MQ=255)
                      gCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGAt               <  1:79208/36‑1 (MQ=255)
                      gCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGAt               >  1:3346845/1‑36 (MQ=255)
                      gCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGAt               >  1:5905124/1‑36 (MQ=255)
                       cAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATg              <  1:2741762/36‑1 (MQ=255)
                       cAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATg              <  1:598804/36‑1 (MQ=255)
                       cAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATg              <  1:3965434/36‑1 (MQ=255)
                        aGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGAttc             >  1:1087336/1‑34 (MQ=255)
                        aGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATgg             >  1:4741808/1‑35 (MQ=255)
                        aGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATgc             <  1:4590110/36‑1 (MQ=255)
                          tAA.TGGTTTCTTCCACTCTCGCTAGTGCTGATgcgc           <  1:246287/36‑1 (MQ=255)
                          tAA.TGGTTTCTTCCACTATCGCTAGTGCTGATgcgc           <  1:2884296/36‑1 (MQ=255)
                          tAA.TGGTTTCTTCCACTATCGCTAGTGCTGATgcgc           <  1:2637939/36‑1 (MQ=255)
                          tAA.TGGTTTCTTCCACTATCGCTAGTGCTGATgcgc           <  1:5647171/36‑1 (MQ=255)
                           aa.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCa          <  1:1606146/36‑1 (MQ=255)
                           aa.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCa          >  1:4288536/1‑36 (MQ=255)
                           aa.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCa          <  1:5084613/36‑1 (MQ=255)
                            a.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCaa         >  1:2138063/1‑36 (MQ=255)
                            a.TGGTTTCTTCCACGATCGCTAGTGCTGATGCGCaa         >  1:3110139/1‑36 (MQ=255)
                              tGGTTTCTTCCACTATCGCTAGTGCTTATTCGCAAg        >  1:2989184/1‑36 (MQ=37)
                               ggTTTCTTCCACTATCGCTATTGCTGATGCGCAAGa       >  1:2431111/1‑36 (MQ=255)
                               ggTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGa       <  1:4656226/36‑1 (MQ=255)
                               ggTTTCTTCCAATATCGCTAGCGCTGATGCGAAAGa       >  1:1153020/1‑36 (MQ=25)
                                gTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGaa      <  1:1057263/36‑1 (MQ=255)
                                gTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGaa      >  1:4702837/1‑36 (MQ=255)
                                gTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGaa      <  1:4439239/36‑1 (MQ=255)
                                 tttCTTCCACTATCGCTAGTGCTGATGCGCAAGaaa     <  1:2098967/36‑1 (MQ=255)
                                 tttCTTCCACTATCGCTAGTGCTGATGCGCAAGaaa     <  1:5064823/36‑1 (MQ=255)
                                 tttCTTCCACTATCGCTAGTGATTATGTGCAAGaaa     >  1:5031159/1‑36 (MQ=25)
                                  ttcttcCACTATCGCTAGTGCTGATTCGCCAGAAAt    >  1:3703759/1‑36 (MQ=37)
                                  ttcttcCACTATCGCTAGTGCTGATGCGCAAGAAAt    <  1:1337643/36‑1 (MQ=255)
                                  ttcttcCACTATCGCTAGTGCTGATGCGCAAGAAAt    >  1:2849521/1‑36 (MQ=255)
                                   tcttcCACTATCGCTAGTGCTGATGCGCAAGAAAtt   <  1:2369827/36‑1 (MQ=255)
                                   tcttcCACTATCGCTAGTGCTGATGAGCAAGAAAtt   >  1:4318213/1‑36 (MQ=255)
                                    cttcCACTATCGCTAGTGCTGATGCGCAAGAAATTg  <  1:2408456/36‑1 (MQ=255)
                                    cttcCACTATCGCTAGTGCTGATGCGCAAGAAATTg  <  1:2682147/36‑1 (MQ=255)
                                    cttcCACTATCGCTAGTGCTGATGCGCAAGAAATTg  >  1:3135416/1‑36 (MQ=255)
                                    |                                   
ACAACATCTGAAACCCGGTACGGCAGTAA.TGGTTTCTTCCACTATCGCTAGTGCTGATGCGCAAGAAATTG  >  REL606/2756553‑2756623

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 14 ≤  ATCG  < 27 ≤  ATCG  < 37 ≤  ATCG