New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1290519 =16 (0.450)5 (0.140) 3/56 NT 29.4% coding (484/1014 nt) hnr response regulator of RpoS
?REL606 = 1977651 8 (0.180)coding (175/1005 nt) yedY hypothetical protein

CTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCG  >  REL606/1290484‑1290550
                                   |                               
cttccGCAGCGGCGAAATTATTGCAGGAACTACAAc                                 <  1:4350183/33‑1 (MQ=37)
 tGCCGCAGCGTCGAAATTATTACAGGAACTACAAcc                                <  1:2111861/36‑1 (MQ=255)
  gCCGCAGCGGCGAAATTATTACAGGAACTACAAccg                               >  1:2074751/1‑36 (MQ=255)
        gcggcgAAATTATTACAGGAACTACAACCGCCGGtt                         >  1:2976921/1‑36 (MQ=255)
              aaaTTATTACAGGAACTACAACCGCCGGTTcagcag                   >  1:4664073/1‑36 (MQ=255)
              aaaTTATTACAGGAACTACAACCGCCGGTTcagcag                   >  1:247228/1‑36 (MQ=255)
               aaTTATTACAGGAACTACAACCGCCGGTTCAGCAgg                  >  1:460611/1‑36 (MQ=255)
                    ttaCAGGAACTACAACCGCCGGTTCAGCAGGTGAtt             >  1:5880179/1‑36 (MQ=255)
                     taaaGGAACTACAACCGCCGGTCCAGCAGGTGAttt            >  1:3703158/4‑36 (MQ=37)
                        aGGAACTACAACCGCCGGTTCGGCAGGAGATTTccc         >  1:1586934/1‑36 (MQ=37)
                        aGGAACTACAACCGCCGGTTCAGCAGGTGATTTcct         >  1:3101919/1‑35 (MQ=255)
                        aGGAACTACAACCGCAGGTTCAGCAGGTGATTTccc         >  1:3805455/1‑36 (MQ=255)
                         ggAACTACAACCGCCGGTTCAGCAGGNNNATNCCCa        >  1:2003147/1‑36 (MQ=37)
                         ccacccccccCCGCCGGTTCAGCAGGTGATTTCCCa        >  1:1666277‑M1/11‑36 (MQ=255)
                           ccccccccCCGCCGGTTCAGCAGGTGATTTCCCAtt      >  1:639033‑M1/9‑36 (MQ=255)
                           acccgcccCCGCCGGTTCAGCAGGTGATTTCCCAtt      >  1:5918961‑M1/9‑36 (MQ=255)
                           acccccccCCGCCGGTTCAGCAGGTGATTTCCCAtt      >  1:616866‑M1/9‑36 (MQ=255)
                            cccccccCCGCCGGTTCAGCAGGTGATTTCCCATTg     >  1:5566752‑M1/8‑36 (MQ=255)
                            aCTACAACCGCCGGTTCAGCAGGTGATTTCCCATTg     >  1:3512714/1‑36 (MQ=255)
                            aCTACAACCGCCGGTTCAGCAGGTGATTTACCATTg     >  1:5769059/1‑36 (MQ=255)
                            aCTACAACCGCCGGTGCGGCAGGAGATTTCCCAttt     >  1:4846361/1‑35 (MQ=21)
                               aCAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCg  >  1:51631/1‑36 (MQ=255)
                                   |                               
CTGCCGCAGCGGCGAAATTATTACAGGAACTACAACCGCCGGTTCAGCAGGTGATTTCCCATTGCCG  >  REL606/1290484‑1290550

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 16 ≤  ATCG  < 26 ≤  ATCG  < 37 ≤  ATCG