Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,574,203 | A→T | 21.3% | intergenic (+45/+773) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,574,203 | 0 | A→T | 21.3% | 2.4 ‑2.9 0.0 | 25 | intergenic (+45/+773) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (10/9): total (16/9) | ||||||||||
Fisher's exact test strand distribution p-value = 5.71e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTTG > REL606/2574171‑2574238
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cAATAAAAAACCGCCGAATTTGGCGGGTTTTTTttt > 1:7469975/1‑35 (MQ=17)
cAATAAAAAACCGCCAAATTCGGCGGGTTTTTTttt > 1:2541716/1‑35 (MQ=17)
aaTAAAAAACCGCCAAATTCGGCGGTGTTTTTtttc > 1:4236733/1‑34 (MQ=17)
aaaaaaaaCCGCCGAATTTGGCGGTTTTTTATTGCt < 1:7911174/34‑1 (MQ=255)
aTAAAAAACCGCCGAATTTGGCGGTTTTTTTttttt > 1:7237136/1‑33 (MQ=17)
aTAAAAAACCGCCGAAGTTGGCGGTTTTTTTtttgt > 1:3714005/1‑33 (MQ=17)
cccgccgAATTTGGCGGTTTTTTATTGCTAGTCTgg < 1:8139377/35‑1 (MQ=255)
ccgAATTTGGCGGTTTTTTATTTCTATTCTTGTTct > 1:5564722/1‑35 (MQ=21)
gAATTTGGCGGTTTTTTTTTTCTATTCTTGTTtgcg > 1:1087243/1‑36 (MQ=12)
gAATTTGGCGGTTTTTTATTGCTAGTCTGGTTcgcg < 1:2668843/36‑1 (MQ=255)
aTTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGc < 1:4913446/36‑1 (MQ=255)
aTTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGc > 1:4931202/1‑36 (MQ=255)
gCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTc > 1:3319547/1‑36 (MQ=255)
gCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTc > 1:4602062/1‑36 (MQ=255)
gCGGTTTTTTATTGCTAGTCTGGTTAGCGGCCTTTc > 1:6405121/1‑36 (MQ=255)
cGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTcc < 1:8193421/36‑1 (MQ=255)
ggTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCca > 1:3707694/1‑36 (MQ=255)
ggTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCca > 1:3871584/1‑36 (MQ=255)
ggTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCca < 1:1216169/36‑1 (MQ=255)
gTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCcag > 1:183084/1‑36 (MQ=255)
ttttttATTGCTAGTCTGGTTCGCGGCCTTTCcagc < 1:7262536/36‑1 (MQ=255)
ttttATTGCTAGTCTGTTTCGCGGCCTTTCcagcag > 1:2490225/1‑36 (MQ=255)
ttttATTGCTAGTCTGGTTCGCGGCCTTTCcagcag < 1:4121660/36‑1 (MQ=255)
tttATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAgg < 1:2062786/36‑1 (MQ=255)
tATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGtt > 1:3525523/1‑36 (MQ=255)
aTTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTTg < 1:56675/36‑1 (MQ=255)
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CAATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTTG > REL606/2574171‑2574238
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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