Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,768,2030G→T13.4% 13.7 ‑13.7 ‑0.0104intergenic (‑5/+45)ygbE/cysCconserved inner membrane protein/adenylylsulfate kinase
Rejected: Prediction has biased read strand distribution supporting polymorphism.
Reads supporting (aligned to +/- strand):  new base (15/0):  ref base (31/58):  total (46/58)
Fisher's exact test strand distribution p-value = 1.07e-06
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.71e-01

Only 100 of 108 total aligned reads displayed.

TTGTTAGTGTAATGTTATGGCTATTACGCATATTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCC  >  REL606/2768168‑2768238
                                   |                                   
ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg                                     <  1:2510445/36‑1 (MQ=255)
ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg                                     <  1:483033/36‑1 (MQ=255)
ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg                                     <  1:1626030/36‑1 (MQ=255)
 tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa                                    <  1:2316161/36‑1 (MQ=255)
 tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa                                    <  1:8116212/36‑1 (MQ=255)
 tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa                                    <  1:8209118/36‑1 (MQ=255)
 tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa                                    <  1:4193095/36‑1 (MQ=255)
  gTTAGTGTAATGTTATGGCTATTACGCATATTTGAt                                   <  1:2774861/36‑1 (MQ=255)
   ttAGTGTAATGTTATGGCTATTATGCATATTTTAtt                                  >  1:3051282/1‑35 (MQ=37)
   ttAGTGTAATGTTATGGCTATTACTCATATTTTATc                                  >  1:6084726/1‑36 (MQ=37)
   ttAGTGTAATGTTATGGCTATTACGCATATTTTATc                                  >  1:623180/1‑36 (MQ=255)
   ttAGTGTAATGTTATGGCTATTACGCATATTTGATc                                  <  1:1424882/36‑1 (MQ=255)
   ttAGTGTAATGTTATGGCTATTAAGCATATTTGAtt                                  >  1:1625111/1‑35 (MQ=255)
    tAGTGTAATGTTATGGCTGTTACCCATATTTGATcc                                 <  1:6832377/36‑1 (MQ=38)
    tAGTGTAATGTTATGGCTATTACGCATATTTGATcc                                 <  1:3219645/36‑1 (MQ=255)
     aGTGTAATGTTATGGCTATTACGCCTATTTTATTCt                                >  1:4931248/1‑36 (MQ=25)
     aGTGTAATGTTATGGCTATTACGCATATTTTATCCt                                >  1:824195/1‑36 (MQ=255)
     aGTGTAATGTTATGGCTATTACGCATATTTGATCCt                                <  1:1322561/36‑1 (MQ=255)
     aGTGTAATGTTATGGCTATTACGCATATTTGATCCt                                >  1:6997600/1‑36 (MQ=255)
     aGTGTAATGTTATGGCTATTACGCATATTTGATCCt                                <  1:1419566/36‑1 (MQ=255)
     aGTGTAATGTTATGGCTATTACGCATATTTGATCCt                                <  1:6548752/36‑1 (MQ=255)
      gtgtAATGTTATGGCTATTACTCATATTTTATCCtt                               >  1:1868286/1‑35 (MQ=37)
      gtgtAATGTTATGGCTATTACGCATATTTTATTCTg                               >  1:5554388/1‑36 (MQ=37)
      gtgtAATGTTATGGCTATTACGCATATTTTATCCtt                               >  1:5944808/1‑35 (MQ=255)
      gtgtAATGTTATGGCTATTACGCATATTTTATCCtt                               >  1:2198993/1‑35 (MQ=255)
      gtgtAATGTTATGGCTATTACGCATATTTGATCCTg                               <  1:2999745/36‑1 (MQ=255)
      gtgtAATGTTATGGCTATTACGCATATTTGATCCTg                               <  1:5769527/36‑1 (MQ=255)
      gtgtAATGTTATGGCTATTACGCATATTTGATCCTg                               <  1:1145769/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:5607329/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:8317880/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:5652667/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:1327721/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:6131813/36‑1 (MQ=255)
       tgtAATGTTATGGCTATTACGCATATTTGATCCTGt                              <  1:4150915/36‑1 (MQ=255)
        gtAATGTTATGGCTATTACGCATATTTGATCCTGtt                             <  1:2344554/36‑1 (MQ=255)
        gtAATGTTATGGCTATTACGCATATTTGATCCTGtt                             <  1:6898821/36‑1 (MQ=255)
        gtAATATTATGGCTATTACGCATATTTGATCCTGtt                             <  1:6468799/36‑1 (MQ=255)
         tAATGTTATGGCTATTACGCATATTTTATCCTTTTa                            >  1:8450223/1‑36 (MQ=37)
         tAATGTTATGGCTATTACGCATATTTTATCCTGttt                            >  1:3503819/1‑35 (MQ=255)
         tAATGTTATGGCTATTACGCATATTTGATCCTGTTa                            <  1:3386648/36‑1 (MQ=255)
         tAATGTTATGGCTATTACGCATATTTGATCCTGTTa                            <  1:7860891/36‑1 (MQ=255)
          aaTTTTATGACTATTCCGCATATTTGATCCTGTTAc                           <  1:6161714/36‑1 (MQ=25)
          aaTGTTATGGCTATTACGCATATTTGATCCTGTTAc                           <  1:8341537/36‑1 (MQ=255)
          aaTGTTATGGCTATTACGCATATTTGATCCTGTTAc                           <  1:1018004/36‑1 (MQ=255)
            tGTTATGGCTATTACGCATATTTTATCCTTTTACtt                         >  1:3175869/1‑36 (MQ=37)
            tGTTATGGCTATTACGCATATTTGATCCTGTTACtt                         <  1:746115/36‑1 (MQ=255)
            tGTTATGGCTATTACGCATATTTGATCCTGTTACtt                         <  1:8238257/36‑1 (MQ=255)
             gTTATGGCTATTACGCATATTTTTTCCTTTTAGttt                        >  1:364784/1‑36 (MQ=16)
             gTTATGGCTATTACGCATATTTGATCCTGTTACttt                        <  1:8335235/36‑1 (MQ=255)
             gTTATGGCTATTACGCATATTTGATCCTGTTACttt                        <  1:4095006/36‑1 (MQ=255)
              ttATGGCTATTACGCATATTTTGTCCTTTTACtttt                       >  1:5933501/1‑35 (MQ=21)
              ttATGGCTATTACGCATATTTGATCCTGTTACTTTg                       <  1:1984402/36‑1 (MQ=255)
                aTGGCTATTACGCATATTTGATCCTTTTACTTTTAc                     >  1:8248867/1‑36 (MQ=38)
                aTGGCTATTACGCATATTTGATCCTGTTACTTTGAc                     <  1:4047833/36‑1 (MQ=255)
                 tGGCTATTACGCATATTTGATCCTGTTACTTTGACg                    <  1:4815460/36‑1 (MQ=255)
                 tGGCTATTACGCATATTTGATCCTGTTAATTTGACg                    >  1:7366754/1‑36 (MQ=255)
                   gCTATTACGCATATTTGATCCTGTTACTTTGACGaa                  <  1:7037904/36‑1 (MQ=255)
                   gCTATTACGCATATTTGATCCTGTTACTTTGACGaa                  >  1:2284940/1‑36 (MQ=255)
                   gCTATTACGCATATTTGATCCTGTTACTTTGACGaa                  >  1:7087287/1‑36 (MQ=255)
                   gCTATTACGCATATTTGATCCTGTTACTTTGACGaa                  >  1:3415597/1‑36 (MQ=255)
                    cTATTACGCATATTTGATCCTGTTACTTTTACGAAc                 >  1:8063681/1‑36 (MQ=255)
                     tATTACGCATATTTGATCCTGTTACTTTGACGAAcc                <  1:7680101/36‑1 (MQ=255)
                     tATTACGCATATTTGATCCTGTTACTTTGACGAAcc                >  1:4676072/1‑36 (MQ=255)
                      aTTACGCATATTTGATCCTGTTACTTTGACGAACCg               >  1:7897529/1‑36 (MQ=255)
                      aTTACGCATATTTGATCCTGTTACTTTGACGAACCg               >  1:2690695/1‑36 (MQ=255)
                      aTTACGCATATTTGATCCTGTTACTTTGACGAACCg               <  1:6705927/36‑1 (MQ=255)
                      aTTACGCATATTTGATCCTGTTACTTTGACGAACCg               >  1:6808503/1‑36 (MQ=255)
                       ttACGCATATTTGATCCTGTTACTTTGACGAACCgg              >  1:6609866/1‑36 (MQ=255)
                        tACGCATATTTGATCCTGTTACTTTGACGAACCggg             >  1:6872837/1‑36 (MQ=255)
                        tACGCATATTTGATCCTGTTACTTTGACGAACCggg             >  1:55453/1‑36 (MQ=255)
                         aCGCATATTTGATCCTGTTACTTTGACGAACCGGGc            >  1:7917176/1‑36 (MQ=255)
                         aCGCATATTTGATCCTGTTACTTTGACGAACCGGGc            >  1:1744162/1‑36 (MQ=255)
                          cGCATATTTGATCCTGTTACTTTGACGAACCGGGCa           <  1:7613191/36‑1 (MQ=255)
                           gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt          <  1:7821771/36‑1 (MQ=255)
                           gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt          <  1:8083568/36‑1 (MQ=255)
                           gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt          <  1:4419331/36‑1 (MQ=255)
                           gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt          >  1:2295190/1‑36 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         <  1:1134350/36‑1 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         <  1:4642029/36‑1 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         <  1:7548781/36‑1 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         >  1:4120242/1‑36 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         <  1:5237903/36‑1 (MQ=255)
                            cATATTTGATCCTGTTACTTTGACGAACCGGGCATg         <  1:2059028/36‑1 (MQ=255)
                             atatTTGATCCTGTTNCTTTNANGAACCGGGCATgg        <  1:2080068/36‑1 (MQ=39)
                             atatTTGATCCTGTTACTTTGACGAACCGGGCATgg        >  1:7913001/1‑36 (MQ=255)
                             atatTTGATCCTGTTACTTTGACGAACCGGGCATgg        >  1:5951958/1‑36 (MQ=255)
                             atatTTGATCCTGTTACTTTGACGAACCGGGCATgg        <  1:152145/36‑1 (MQ=255)
                             atatTTGATCCTGTTACTTTGACGAACCGGGCATgg        >  1:7664686/1‑36 (MQ=255)
                              tatTTGATCCTGTTACTTTGACGAACCGGGCATGGa       >  1:3356527/1‑36 (MQ=255)
                               atTTGATCCTGTTACTTTGACGACCCGGGCATGGaa      >  1:7904508/1‑36 (MQ=255)
                               atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa      <  1:8447951/36‑1 (MQ=255)
                               atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa      <  1:217221/36‑1 (MQ=255)
                               atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa      >  1:7495660/1‑36 (MQ=255)
                               atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa      >  1:2623786/1‑36 (MQ=255)
                                tttGATCCTGTTACTTTGACGAACCGGGCATGGaaa     >  1:5666597/1‑36 (MQ=255)
                                 ttGATCCTGTTACTTTGACGAACCGGGCATGGAAAc    <  1:356420/36‑1 (MQ=255)
                                 ttGATCCTGTTACTTTGACGAACCGGGCATGGAAAc    >  1:3511283/1‑36 (MQ=255)
                                  tGATCCTGTTACTTTGACGAACCGGGCATGGAAAcc   <  1:5986841/36‑1 (MQ=255)
                                  tGATCCTGTTACTTTGACGAACCGGGCATGGAAAcc   >  1:2064841/1‑36 (MQ=255)
                                   gATCCTGTTACTTTGACGAACCGGGCATGGAAAccc  <  1:3872872/36‑1 (MQ=255)
                                   |                                   
TTGTTAGTGTAATGTTATGGCTATTACGCATATTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCC  >  REL606/2768168‑2768238

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG