Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 218,776 | +G | 6.2% | coding (666/711 nt) | cutF → | lipoprotein involved with copper homeostasis and adhesion |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 218,776 | 1 | .→G | 6.2% | 2.8 ‑0.7 ‑0.0 | 32 | coding (666/711 nt) | cutF | lipoprotein involved with copper homeostasis and adhesion |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (18/12): total (20/12) | ||||||||||
Fisher's exact test strand distribution p-value = 5.16e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.63e-01 |
GTGCGCCGACTAAAGTATTGGCACCCGATACGGCA.GGGAAATTTTACCCCAACCAGGATTGCAGTAGTTT > REL606/218742‑218811
|
gTGCGCCGACTAAAGTATTGGCACCCGATACGGCA.g > 1:2833096/1‑36 (MQ=255)
gcgcCGACTAAAGTATTGGCACCCGATACGGCA.ggg < 1:255199/36‑1 (MQ=255)
cgcCGACTAAAGTATTGGCACCCGATACGGCA.GGGa < 1:4667493/36‑1 (MQ=255)
gcCGACTAAAGTATTGGCACCCGATACGGCA.gggga > 1:2183557/1‑34 (MQ=255)
gcCGACTAAAGTATTGGCACCCGATACGGCA.gggga > 1:4342964/1‑34 (MQ=255)
gcCGACTAAAGTATTGGCACCCGATACGGCA.GGGaa > 1:3986524/1‑36 (MQ=255)
cGACTAAAGTATTGGCACCCGATACGGCA.GGGgaaa > 1:3772234/1‑35 (MQ=255)
gACTAAAGTATTGGCAACCGATACGGCA.GGGcaaat > 1:3165752/1‑34 (MQ=37)
aCTAAAGTATTGGCACCCGATACGGCA.GGGGAAttt > 1:1632875/1‑36 (MQ=255)
aCTAAAGTATTGGCACCCGATACGGCA.GGGGAAttt > 1:4046982/1‑36 (MQ=255)
aCTAAAGTATTGGCACCCGATACGGCA.GGGGAAttt > 1:2178286/1‑36 (MQ=255)
aCTAAAGTATTGGCACCCGATACGGCA.GGGGAAatt > 1:4113021/1‑36 (MQ=38)
cTAAAGTATTGGCACCCGATACGGCA.GGGGAAattt > 1:3011468/1‑36 (MQ=38)
tAAAGTATTGGCACCCGAGACGGCAGGGGAAAtttt > 1:3005088/1‑36 (MQ=21)
aaaGTATTGGCAGCCGATACGGCA.GGGAAATTTTAc < 1:5699893/36‑1 (MQ=255)
aaaGTATTGGCACCCGATACCGCA.GGGGAAtttttc > 1:3684657/1‑34 (MQ=37)
aaGTATTGGCACCCGATACGGCA.GGGGAATTTTatt > 1:1408382/1‑34 (MQ=37)
aGTATTGGCACCCGATACGGCA.GGGAAAATTTAccc > 1:1264630/1‑36 (MQ=255)
aGTATTGGCACCCGATACGGAA.GGGGAATTTTTccc > 1:4892215/1‑36 (MQ=25)
gTATTGGCACCCGATACGGCA.GGGGAATTTTAcccc > 1:1442922/1‑36 (MQ=255)
tATTGGCACCCGATACGGCA.GGGAAATTTTACCCCa < 1:1704544/36‑1 (MQ=255)
tATTGGCACCCGATACGGCA.GGGAAATTTTACCCCa < 1:1361200/36‑1 (MQ=255)
aTTGGCACCCGATACGGCA.GGGAAATTTTAccccca > 1:5714967/1‑34 (MQ=255)
aTTGGCACCCGATACGGCA.GGGAAAATTTACCCCaa > 1:5050643/1‑36 (MQ=255)
ttGGCACCCGATACGGCA.GGGAAATTTTACCCCAAc < 1:2306984/36‑1 (MQ=255)
ttGGCACCCGATACGGCA.GGGAAATTTTACCCCAAc < 1:4693600/36‑1 (MQ=255)
tGGCTCCCGATACGGCA.GGGAAATTTTACCCCAAcc < 1:3735381/36‑1 (MQ=255)
ggCACCCGATACGGCAGGGGAAATTTTACCCCACcc > 1:3028797/1‑36 (MQ=25)
gCACCCGATACGGCA.GGGAAATTTTACCCCAACCAg < 1:4207191/36‑1 (MQ=255)
ccGATACGGCA.GGGAAATTTTACCCCAACCAGGAtt < 1:3414473/36‑1 (MQ=255)
cGATACGGCA.GGGGAATTTTACCCCCACCAGGATTg > 1:3004221/1‑36 (MQ=37)
gATACGGCA.GGGGAATTTTACCCCCACCACGATTGc > 1:1551858/1‑36 (MQ=25)
aCGGCA.GGGAAATTTTACCCCAACCAGGATTGCagt < 1:1150676/36‑1 (MQ=255)
cGGCA.GGGAAATTTTACCCCAACCAGGATTGCagta < 1:2792449/36‑1 (MQ=255)
ggCA.GGGAAATTTTACCCCAACCAGGATTGCagtag > 1:284016/1‑36 (MQ=255)
ggCA.GGGAAATTTTACCCCAACCAGGATTGCagtag < 1:1299258/36‑1 (MQ=255)
a.GGGAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:2819710/1‑36 (MQ=255)
|
GTGCGCCGACTAAAGTATTGGCACCCGATACGGCA.GGGAAATTTTACCCCAACCAGGATTGCAGTAGTTT > REL606/218742‑218811
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|