Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,391,592 | A→G | 30.8% | E137G (GAG→GGG) | yjfC → | predicted synthetase/amidase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,391,592 | 0 | A→G | 30.8% | 3.2 ‑2.0 0.0 | 18 | 410 | yjfC | predicted synthetase/amidase |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (4/8): total (9/9) | ||||||||||
Fisher's exact test strand distribution p-value = 1.31e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TACGAGTCGGCTTATTTCCAGTGGCTGTGGCTGGAGGATGCCCGGCGCAGCGGCATTATTCCGCGTGAT > REL606/4391558‑4391626
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tACGAGTCGGCTTATTTCCAGTGGCTGTGGCTggag < 1:2683378/36‑1 (MQ=255)
aCGCGTCGGCTTATTTCCAGTGGCTGTGGCTggagg < 1:3212666/36‑1 (MQ=255)
aCGAGTCGGCTTATTTCCAGTGGCTGGGGCTggggg > 1:1331249/1‑36 (MQ=37)
cGAGTCGTCTTATTTCCAGTGGCTGTGGCTggagga < 1:5193419/36‑1 (MQ=255)
cGAGTCGGCTTATTTCCAGTGGCTGTGGCTggagga < 1:2474697/36‑1 (MQ=255)
gAGTCGGCTTATTTCCAGTGGCTGTGGCTGGAGGAt < 1:4538921/36‑1 (MQ=255)
gTCGGCTTATTTCCAGTGGCTGTGGCTGGAGGATGc < 1:4693818/36‑1 (MQ=255)
cGGCTTATTTCCAGTGGCTGTGGGTGGGGGGTGgcc > 1:1117667/1‑36 (MQ=19)
gCTTATTTCCAGTGGCTGTGGGTTGGGGGTGTCCgg > 1:3381354/1‑36 (MQ=16)
cTTATTTCCAGTGGCTGTGGCTGGAGGATGCCCGgc < 1:491341/36‑1 (MQ=255)
aTTTCCAGTGGCTGTGGGTGGGGGGTGGCCGgggcg > 1:1634270/1‑35 (MQ=9)
tttCCAGTGGCTGTGGGTTGGGGGTTCCCGgggcgg > 1:5779592/1‑34 (MQ=9)
tttCCAGTGGCTGTGGCTGGGGGATGCCCCgcgccg > 1:3323607/1‑34 (MQ=25)
cAGTGGCTGTGGCTGGAGGATGCCCGGCGCAGCGGc < 1:1368698/36‑1 (MQ=255)
tggctgtggctgGAGGATGCCCGGCGCAGCGGCatt < 1:874716/36‑1 (MQ=255)
ctgtggctgGAGGATGCCCGGCGCAGCGGCattatt < 1:4003770/36‑1 (MQ=255)
ctgtggataGAGGATGCCCGGCGCAGCGGCattatt < 1:2249043/36‑1 (MQ=37)
tgtggctgGAGGATGCCCGGCGCAGCGGGATTTTTc > 1:3145843/1‑36 (MQ=25)
gtggctgGAGGATGCCCGGGGCAGCGGCATTATTcc < 1:852610/36‑1 (MQ=255)
tggctgGAGGATGCCCGGAGCAGCGGCATTATTCcg > 1:4734695/1‑36 (MQ=255)
ggctgGGNNNTGCCCGGCGCCGCGGCATTATTCcgc < 1:1987197/36‑1 (MQ=25)
gctgGAGGATGCCAGGCGCAGCGGCATTATTCcgcg > 1:3853969/1‑36 (MQ=255)
tgGAGGATGCCCGGCGCAGAGGCATTATTCCGCGTg > 1:1363793/1‑36 (MQ=255)
ggaggaTGCCCGGCGCAGCGGCATTATTCCGCGTGa > 1:774518/1‑36 (MQ=255)
ggaggaTGCCCGGCGCAGCGGCATTATTCCGCGTGa > 1:83479/1‑36 (MQ=255)
gaggaTGCCCGGCGCAGGGGCATTATTCCGCGTGAt > 1:564206/1‑36 (MQ=255)
gaggaTGCCCGGCGCAGCGGCATTATTCCGCGTGAt < 1:4994325/36‑1 (MQ=255)
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TACGAGTCGGCTTATTTCCAGTGGCTGTGGCTGGAGGATGCCCGGCGCAGCGGCATTATTCCGCGTGAT > REL606/4391558‑4391626
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 13 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
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