Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 348,984 | G→T | 23.5% | L390F (TTG→TTT) | mhpT → | predicted 3‑hydroxyphenylpropionic transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 348,984 | 0 | G→T | 23.5% | 2.6 ‑4.5 0.0 | 31 | 1170 | mhpT | predicted 3‑hydroxyphenylpropionic transporter |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (11/12): total (19/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.16e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGATCACGAATACAGCCGTGCGCCG > REL606/348949‑349018
|
ggTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTtg < 1:2355491/36‑1 (MQ=255)
tATTCTTGTTGCTGGGTTGGCGGTGTTTATTTtgat < 1:7265528/36‑1 (MQ=255)
tCTTGTTGCTGGGTTGGCGGTGTTTATTTTTATTAg > 1:6571625/1‑36 (MQ=37)
cTTGTTGCTGGGTTGGCGGTTTTTATTTTGATGAGc < 1:5401195/36‑1 (MQ=255)
cTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGc < 1:1859730/36‑1 (MQ=255)
tgttgCTGGGTTGGCGGTGTTTTTTTTTTTGAGCCg > 1:4987291/1‑36 (MQ=25)
tgttgCTGGGTTGGCGGTGTTTATTTTGATGAGCCg > 1:2104742/1‑36 (MQ=255)
gttgCTGGGTTGGCGGTGTTTTTTTTTATGAGCCgg > 1:1918705/1‑36 (MQ=37)
gttgCTGGGTTGGCGGTGTTTTTTTTTATGAGCCgg > 1:4111924/1‑36 (MQ=37)
gttgCTGGGTTGGCGGTGTTTTTTTTGATTAGGCgg > 1:1932065/1‑36 (MQ=25)
ttgCTGGGTTGGCGGTGTTTATTTTGATGAGCCGga < 1:6991871/36‑1 (MQ=255)
gCTGGGTTGGCGGTGTTTTTTTTTATTAGCCGggga > 1:5649315/1‑36 (MQ=19)
gCTGGGTTGGCGGTGTTTATTTTGATGAGCCGgaga > 1:3738865/1‑36 (MQ=255)
cTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGAt > 1:6511488/1‑36 (MQ=255)
tGGGTGGGCGGTGTTTATTTTGATGAGCCGGAGATc < 1:553672/36‑1 (MQ=255)
gggTTGGCGGTGTTTATTTTTATGAGCCGGAGATCa > 1:3103544/1‑36 (MQ=255)
gggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCa < 1:782900/36‑1 (MQ=255)
ggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCAc > 1:6794585/1‑36 (MQ=255)
ggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCAc > 1:3578840/1‑36 (MQ=255)
gTTGGCGGTCTTTATTTTTATTAGCCGGAGATCACg > 1:1686801/1‑36 (MQ=25)
ttGGCGGTGTTTATTTTTATGATCCGGAGATCACGa > 1:6413039/1‑36 (MQ=37)
ttGGCGGTGTTTATTTTGATGAGCCGGAGATCACGa < 1:7240221/36‑1 (MQ=255)
ttGGCGGTGTTTATTTTGATGAGCCGGAGATCACGa < 1:1266721/36‑1 (MQ=255)
tGGCGGTGTTTATTTTGATTAGCCGGAGATCACGaa < 1:7614055/36‑1 (MQ=255)
ggTGTTTATTTTGATGAGCCGGAGATCACGAATACa > 1:4228009/1‑36 (MQ=255)
tgtTTATTTTGATGAGCCGGAGATCACGAATACAGc < 1:3942463/36‑1 (MQ=255)
tttATTTTGATGAGCCGGAGATCACGAATACAGCCg > 1:6166149/1‑36 (MQ=255)
tATTTTGATGAGCCGGAGATCACGAATACAGCCGTg < 1:6505615/36‑1 (MQ=255)
tATTTTGATGAGCCGGAGATCACGAATACAGCCGTg < 1:861150/36‑1 (MQ=255)
aTTTTGATGAGCCGGAGATCACGAATACAGCCGTgc < 1:3826467/36‑1 (MQ=255)
aTTTTGATGAGCCGGAGATCACGAATAAAGCCGCgc > 1:5293115/1‑36 (MQ=37)
ttttGATGAGCCTGAGATCACGAATACAGCCGTgcg > 1:3343359/1‑36 (MQ=255)
ttttGATGAGCCGGAGATCACGAATACAGCCGGgcg > 1:939824/1‑36 (MQ=255)
tgatgaGCCGGAGATCACGAATACAGCCGTGCGCCg > 1:552064/1‑36 (MQ=255)
|
GGTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGATCACGAATACAGCCGTGCGCCG > REL606/348949‑349018
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|