Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,100,655 | C→T | 16.6% | M192I (ATG→ATA) | hslU ← | ATP‑dependent protease ATP‑binding subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,100,655 | 0 | C→T | 16.6% | 10.7 ‑0.9 ‑0.0 | 42 | 576 | hslU | ATP‑dependent protease ATP‑binding subunit |
Reads supporting (aligned to +/- strand): new base (2/5): ref base (19/16): total (21/21) | ||||||||||
Fisher's exact test strand distribution p-value = 4.10e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.63e-01 |
GGAACATGGACTGCAGCTGGCTGGTCATCTCTTCCATGCCCGGAGGAGCCATAATTTCAACGCCCATCGG > REL606/4100621‑4100690
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ggAACATGGACTGCAGCTGGCTGGTCATCTCTTCCa > 1:1499729/1‑36 (MQ=255)
ggAACATGGACTGCAGCTGGCTGGTCATCTCTTCCa < 1:6267884/36‑1 (MQ=255)
gAACATGGACTGCAGCTGGCTGGTCATCTCTTCCAt > 1:3711380/1‑36 (MQ=255)
gAACATGGACTGCAGCTGGCTGGTCATCTCTTCCAt < 1:175019/36‑1 (MQ=255)
aCATGGACTGCCGCTGTCTGGTCCTCTCTTCCCTGc < 1:1935198/36‑1 (MQ=16)
aCATGGACTGCAGCTGGCTGGTCATCTCTTCCATGc > 1:6679590/1‑36 (MQ=255)
cATGGACTGCAGCTGGCTGGTCATCTCTTCCATGcc > 1:4273478/1‑36 (MQ=255)
aTGGACTGCAGCTGGCTGGTCATCTCTTCCATGccc < 1:2231750/36‑1 (MQ=255)
tGGACTGCAGCTGGCTGGTCATCTCTTCTATGCCCg < 1:7056406/36‑1 (MQ=255)
tGGACTGCAGCTGGCTGGTCATCTCTTCCATGCCCg > 1:6501996/1‑36 (MQ=255)
ggACTGCAGCTGGCTGGTCATCTCTTCCATGCCCgg < 1:3698191/36‑1 (MQ=255)
gACTGCAGCTGGCTGGTCATCTCTTCCATGCCCgga < 1:3033757/36‑1 (MQ=255)
tGCAGCTGGCTGGTCATCTCTTCCATGCCCggagga < 1:6817440/36‑1 (MQ=255)
tGCAGCTGGCTGGTCATCTCTTCCATGCCCggagga > 1:7345954/1‑36 (MQ=255)
tGCAGCTGGCTGGTCATCTCTTCCATGCCCggagga > 1:5073226/1‑36 (MQ=255)
gCAGCTGGCTGGTCATCTCTTCCATGCCCGgaggag > 1:6399846/1‑36 (MQ=255)
gCAGCTGGCTGGTCATCTCTTCCATGCCCGgaggag > 1:5286033/1‑36 (MQ=255)
cAGCTGGCTGGTCATCTCTTCTATGCCCGGAGGAGc < 1:1488665/36‑1 (MQ=255)
cAGCTGGCTGGTCATCTCTTCCATGCCCGGAGGAGc < 1:3789132/36‑1 (MQ=255)
aGCTGGCTGGTCATCTCTTCCATGCCCGGAGGAGcc > 1:8569/1‑36 (MQ=255)
gctggctgGTCATCTCTTCCATGCCCGGAGGAGCCa < 1:1891228/36‑1 (MQ=255)
ctggctggTCATCTCTTCCATGCCCGGAGGAGCCAt > 1:4252343/1‑36 (MQ=255)
ctggctggTCATCTCTTCCATGCCCGGAGGAGCCAt < 1:5012123/36‑1 (MQ=255)
ggctggTCATCTCTTCCATGCCCGGAGGAGCCATaa < 1:3753787/36‑1 (MQ=255)
gctgtTCATCTCTTCTAGGCCCGGAGGAGCCATAAt < 1:5259283/36‑1 (MQ=25)
gctggTCATCTCTTCTATGCCCGGAGGAGCCATAAt > 1:6481932/1‑36 (MQ=255)
gctggTCATCTCTTCCATGCCCGGAGGAGCCATAAt > 1:5767164/1‑36 (MQ=255)
tggTCATCTCTTCTATGCCCGGAGGAGCCATAAttt > 1:1668528/1‑36 (MQ=255)
ggTCATCTCTTCCATGCCCGGAGGAGCCATAATTTc > 1:306833/1‑36 (MQ=255)
ggTCATCTCTTCCATGCCCGGAGGAGCCATAATCTc > 1:3285841/1‑36 (MQ=255)
aTCTCTTCCATGCCCGGAGGAGCCATAATTTCAACg > 1:558551/1‑36 (MQ=255)
aTCTCTTCCATGCCCGGAGGAGCCATAATTTCAACg < 1:3176193/36‑1 (MQ=255)
aTCTCTTCCATGCCCGGAGGAGCCATAATTTCAACg > 1:4765933/1‑36 (MQ=255)
ctctTCCATGCCCGGAGGAGCCATAATTTCAACGcc > 1:4592858/1‑36 (MQ=255)
tctTCTAGGCCCGGAGGAGCCATAATTTCAACGccc < 1:2933779/36‑1 (MQ=37)
tctTCCATGCCCGGAGGAGCCATAATTTCAACGccc < 1:5833660/36‑1 (MQ=255)
tctTCCAGGCCCGGAGGAGCCATAATTTCAACGccc < 1:3218053/36‑1 (MQ=255)
ttCTATGCCCGGAGGAGCCTTAATTTCAACGCCCAt < 1:4443982/36‑1 (MQ=37)
ttCCATGCCCGGAGGATCCATAATTTCAACGCCCAt < 1:7451115/36‑1 (MQ=255)
ttCCATGCCCGGAGGAGCCATAATTTCAACGCCCAt < 1:2164982/36‑1 (MQ=255)
ttCCATGCCCGGAGGAGCCATAATTTCAACGCCCAt > 1:6253872/1‑36 (MQ=255)
tCCATGCCCGGAGGTGCCATAATTTCAACGCCCAtt > 1:7035561/1‑35 (MQ=255)
ccATGCCCGGAGGAGCCATAATTTCAACGCCCATCg < 1:6670597/36‑1 (MQ=255)
ccATGCCCGGAGGAGCCATAATTTCAACGCCCATCg > 1:6582365/1‑36 (MQ=255)
ccATGCCCGGAGGAGCCATAATTTCAACGCCCATCg < 1:2761946/36‑1 (MQ=255)
cATGCCCGGAGGAGCCATAATTTCAACGCCCATCgg > 1:5772656/1‑36 (MQ=255)
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GGAACATGGACTGCAGCTGGCTGGTCATCTCTTCCATGCCCGGAGGAGCCATAATTTCAACGCCCATCGG > REL606/4100621‑4100690
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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