Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,855,581 | T→A | 15.5% | intergenic (+2/+52) | yieF → / ← yieG | chromate reductase, Class I, flavoprotein/predicted inner membrane protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,855,581 | 0 | T→A | 15.5% | 2.0 ‑2.7 0.0 | 30 | intergenic (+2/+52) | yieF/yieG | chromate reductase, Class I, flavoprotein/predicted inner membrane protein |
Reads supporting (aligned to +/- strand): new base (0/5): ref base (12/13): total (12/18) | ||||||||||
Fisher's exact test strand distribution p-value = 6.57e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGTAATCATGCATGGCGG > REL606/3855546‑3855611
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aTTTGGTGAGTTTATTCAGCGAGTTAAGATCtaaat < 1:2096687/36‑1 (MQ=255)
tGGTGAGTTTATTCAGCGAGTTAAGATCtaaataaa > 1:2065104/1‑36 (MQ=255)
tGGTGAGTTTATTCAGCGAGTTAAGATCtaaataaa > 1:7013548/1‑36 (MQ=255)
gTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaa < 1:6156515/36‑1 (MQ=255)
tGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaaa > 1:4369634/1‑36 (MQ=255)
tGAGTTTATTAAGCGAGTTAAGATCTAAATaaaaaa < 1:6682160/36‑1 (MQ=255)
ttATTCAGCGAGTTAAGATCTAAATAAAAACCCCGc < 1:3573563/36‑1 (MQ=255)
ttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc < 1:6147130/36‑1 (MQ=255)
ttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc < 1:6505346/36‑1 (MQ=255)
ttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc > 1:56333/1‑36 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc < 1:2215953/36‑1 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc < 1:7256557/36‑1 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc > 1:8203627/1‑36 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc < 1:30912/36‑1 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc < 1:3877577/36‑1 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc < 1:4052800/36‑1 (MQ=255)
tATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc > 1:6603786/1‑36 (MQ=255)
aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa > 1:3742429/1‑36 (MQ=255)
aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa < 1:2237967/36‑1 (MQ=255)
aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa > 1:981231/1‑36 (MQ=255)
ttCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAg < 1:2985095/36‑1 (MQ=255)
aaaGCGAGTTAAGATCTAAAAAAAAAACCCGCCAgc < 1:611198/34‑2 (MQ=37)
cAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGTa > 1:4370630/1‑36 (MQ=255)
cAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGTa > 1:1461950/1‑36 (MQ=255)
aGCGATTAAAAATATAAAAAAAAACCCCGCCAGTaa < 1:2659584/36‑1 (MQ=9)
gAGTTAAGATATAAATAAAAAACCCGCCAGTAATca < 1:55078/36‑1 (MQ=255)
gTTAAGATCTAAATAAAAAACCCGCCAGTAATcatg > 1:4078567/1‑36 (MQ=255)
attAAGACATAAAAAAAAAACCCGCCAGTAATcatg < 1:8295123/35‑1 (MQ=21)
taaaGATAAAAAAAAAAACCCCGCCAGTAATcatgc < 1:7092255/34‑1 (MQ=16)
aaaaTCAAAAAAAAAATCCCGCCAGTAATcatgcat < 1:1754842/33‑1 (MQ=19)
aGATCTAAATAAAAAACCCGCCAGTAATcatgcatg > 1:5965710/1‑36 (MQ=255)
gATCTAAATAAAAAACCCGCCAGTAATCATGCATgg > 1:6663456/1‑36 (MQ=255)
aTCTAAATAAAAAACCCGCCAGTAATCATGCATGGc > 1:1368125/1‑36 (MQ=255)
ttaaaaaaaAAGCCCGCCAGTAATCATGCATGGCgg < 1:5252363/35‑1 (MQ=25)
aaaaaaaaaAAACCCGCCAGTAATCATGCATGGCgg < 1:2750420/34‑1 (MQ=37)
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ATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGTAATCATGCATGGCGG > REL606/3855546‑3855611
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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