Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,728,648 | 0 | C→A | 6.1% | 2.7 ‑6.6 0.0 | 105 | 1313 | norV | anaerobic nitric oxide reductase flavorubredoxin |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/8): ref base (57/40): total (57/48) | ||||||||||
Fisher's exact test strand distribution p-value = 1.35e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 111 total aligned reads displayed.
GCAGTGCAGCGTCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAA > REL606/2728613‑2728683
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gcagtgcagCGTCTGCCAGTGGATTTACGATCCGGc < 1:5223319/36‑1 (MQ=255)
gcagtgcagCGTCTGCCAGTGGATTTACGATCCGGc < 1:6252118/36‑1 (MQ=255)
gcagtgcagCGTCTGCCAGTGGATTTACGATCCGGc > 1:3414912/1‑36 (MQ=255)
gcagtgcagCGTCTGCCAGTGGA.TTACGATCCGGCa < 1:1141353/36‑1 (MQ=38)
cagtgcagCGTCTGCCAGTGGATTTACGATCCGGCa < 1:2410959/36‑1 (MQ=255)
agtgcagCGTCTGCCAGTGGATTTACGATCCGGCaa > 1:4157485/1‑36 (MQ=255)
gtgcagCGTCTGCCAGTGGATTTACGATCCGGCaaa > 1:4447296/1‑36 (MQ=255)
gtgcagCGTCTGCCAGTGGATTTACGATCCGGCaaa > 1:1697297/1‑36 (MQ=255)
gcgcagCGTCTGCCAGTGGATTTACGATCCGGCaaa < 1:3932983/34‑1 (MQ=255)
tgcagCGTCTGCCTGTGGATTTACGATCCGGCaaaa < 1:7871035/36‑1 (MQ=255)
tgcagCGTCTGCCAGTGGATTTACGATCCGGCaaaa < 1:7709697/36‑1 (MQ=255)
tgcagCGTCTGCCAGTGGATTTACGATCCGGCaaaa > 1:2758312/1‑36 (MQ=255)
tgcagCGTCTGCAAGTGGATTTACGATCCGGCaaaa > 1:1297847/1‑36 (MQ=255)
tgcagCGTCCGCCAGTGGATTTACGATCCGGCaaaa < 1:4541459/36‑1 (MQ=255)
gcagCGTCTGCCAGTGGATTTACGATCCGGCAAAAg < 1:3099447/36‑1 (MQ=255)
gcagCGTCTGCCAGTGGATTTACGATCCGGCAAAAg > 1:1097335/1‑36 (MQ=255)
gcagCGTCTGCCAGTGGATTTACGATCCGGCAAAAg > 1:8269779/1‑36 (MQ=255)
cagCGTCTGCCAGTGGATTTACGATCCGGCAAAAgg > 1:6358917/1‑36 (MQ=255)
cagCGTCTGCCAGTGGATTTACGATCCGGCAAAAgg > 1:6200234/1‑36 (MQ=255)
cagCGTCTGCCAGTGGATTTACGATCCGGCAAAAgg < 1:4542694/36‑1 (MQ=255)
cagCGTCTGCCAGTGGATTTACGATCCGGCAAAAgg < 1:4614551/36‑1 (MQ=255)
agCGTCTGCCAGTGGATTTACGATCCGGCAAAAGGc < 1:1180066/36‑1 (MQ=255)
agCGTCTGCCAGTGGATTTACGATCCGGCAAAAGGc < 1:3320929/36‑1 (MQ=255)
gCGTCTGCCAGTGGATTTACGATCCGGCAAAAGGCg < 1:5858377/36‑1 (MQ=255)
gTCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAg < 1:5685698/36‑1 (MQ=255)
gTCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAg > 1:7270957/1‑36 (MQ=255)
gTCTGCCAGTGGATTAACGCTCCGGCATAAAGCgcg > 1:7282796/1‑34 (MQ=16)
tCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAGc < 1:5041207/36‑1 (MQ=255)
tCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAGc < 1:5732133/36‑1 (MQ=255)
cttccAGTGGATTTACGATCCGGCAAAAGGCGAGcc < 1:4656587/33‑1 (MQ=255)
cTGCCAGTGGATTTACGATCCGGCAAAAGGCGAGcc < 1:365077/36‑1 (MQ=255)
cTGCCAGTGGATTTACGATCCGCCAAAAGGCGAGcc > 1:7720202/1‑36 (MQ=255)
tGCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCa > 1:647595/1‑36 (MQ=255)
tGCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCa < 1:6954728/36‑1 (MQ=255)
tGCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCa < 1:1993697/36‑1 (MQ=255)
gCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCaa < 1:893343/36‑1 (MQ=255)
gCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCaa < 1:2244019/36‑1 (MQ=255)
gCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCaa < 1:157800/36‑1 (MQ=255)
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAAt > 1:4713202/1‑36 (MQ=255)
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAAt < 1:658604/36‑1 (MQ=255)
cAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATg > 1:1136859/1‑36 (MQ=255)
cAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATg < 1:7549469/36‑1 (MQ=255)
cAGTGGATTTACGATCCCGCAAAAGGCGAGCCAATg > 1:4300755/1‑36 (MQ=255)
cAGTGGATTTACGATCCAGCAAAAGGCGAGCCAATg > 1:3781302/1‑36 (MQ=255)
aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGc > 1:2446892/1‑36 (MQ=255)
aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGc > 1:261196/1‑36 (MQ=255)
aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGc > 1:3215837/1‑36 (MQ=255)
aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGc > 1:1406491/1‑36 (MQ=255)
gTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCa < 1:2759707/36‑1 (MQ=255)
gTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCa > 1:7173810/1‑36 (MQ=255)
gTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCa > 1:271785/1‑36 (MQ=255)
gTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCa > 1:209032/1‑36 (MQ=255)
tGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAg > 1:4279689/1‑36 (MQ=255)
tGGATTTACGATCCGGCAAAAGGAGAGACAATGCAg > 1:3745953/1‑36 (MQ=37)
ggATTTACGATCCGGCAAAAGGCGAGCCAATGCAgg < 1:4197412/36‑1 (MQ=255)
ggATTTACGATCCGGCAAAAGGCGAGCCAATGCAgg > 1:1089276/1‑36 (MQ=255)
ggATTTACGATCCGGCAAAAGGCGAGCCAAGGCAgg > 1:4058698/1‑36 (MQ=255)
ggATTTACGATCCGGAAAAAGTGGATCCAATGCAgg < 1:2879997/36‑1 (MQ=16)
gATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGa < 1:2333473/36‑1 (MQ=255)
ttttACAATCCGGAAAAAGGGGAGCCAATGCAGGAc < 1:3882067/35‑1 (MQ=25)
aTTTACGATCCGGCAAAAGGCGAGCCAATGCAgggc > 1:2011322/1‑34 (MQ=255)
aTTTACGATCCGGCAAAAGGCGAGCCAATGCAGGAc > 1:3631803/1‑36 (MQ=255)
aTTTACGATCCGGCAAAAGGCGAGCCAATGCAGGAc > 1:259376/1‑36 (MQ=255)
aTTTACGATCCGGCAAAAGGCGAGCCAATGCAGGAc < 1:8437147/36‑1 (MQ=255)
aTTTACGATCCGGCAAAAGGCGAGCCAATGCAGGAc > 1:5626329/1‑36 (MQ=255)
aTTTACGATCCGGAAAAAGGCGAGCCAATGCAGGAc < 1:5633990/36‑1 (MQ=255)
ttACGATCCGGCAAAAGGCGAGCCAATGCAGGACGt > 1:5930725/1‑36 (MQ=255)
ttACGATCCGGCAAAAGGCGAGCCAATGCAGGACGt > 1:2661905/1‑36 (MQ=255)
ttACGATCCGGAAAAAGGCGAGCCAATGCAGGACGt < 1:3802258/36‑1 (MQ=255)
taaCGATCCGGAAAAAGGCGAGCCAATGCAGGACGt < 1:2431642/34‑1 (MQ=37)
taaCGACCCGGAAAAAGGCGAGCCAATGCAGGACGt < 1:3723950/34‑1 (MQ=25)
tACGATCCGGCAAAAGGCGCGCCAATGCAGGACGtt > 1:7473630/1‑36 (MQ=255)
tACGATCCGGCAAAAGGCGAGCCAATGCAGGACGtt < 1:1929039/36‑1 (MQ=255)
tACGATCCGGCAAAAGGCGAGCCAATGCAGGACGtt < 1:6504459/36‑1 (MQ=255)
acaaTCCGGCAAAAGGCGAGCCAATGCAGGACGTTg < 1:234126/33‑1 (MQ=255)
aCGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTg < 1:301181/36‑1 (MQ=255)
cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTgc < 1:7320116/36‑1 (MQ=255)
cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTgc < 1:1017481/36‑1 (MQ=255)
gATCCGGCAAAAGGCGAGCCAATGCAGGACGTTgcg > 1:6327623/1‑36 (MQ=255)
gATCCGGCAAAAGGCGAGCCAATGCAGGACGTTgcg > 1:4523881/1‑36 (MQ=255)
gATCCGGCAAAAGGCGAGCCAATGCAGGACGTTgcg > 1:6152922/1‑36 (MQ=255)
gATCCGGCAAAAGCCGAGCCAATGCAGGACGTTgcg > 1:3586750/1‑36 (MQ=255)
gATCCGGAAAAAGGCGAGCCAATGCAGGACGTTgcg < 1:7215140/36‑1 (MQ=255)
gATCCGGAAAAAGGCGAGCAAATGCAGGACGTTgcg < 1:2496452/36‑1 (MQ=25)
aTCCGGCAAAAGGCGAGCCAATGCAGGACGTTgcgc > 1:2440394/1‑36 (MQ=255)
aTCCGGCAAAAGGCGAGCCAATGCAGGACGTTgcgc > 1:2730965/1‑36 (MQ=255)
tCCGGCAAAAGGCGAGCCAAGGCAGGACGTTGCGcc < 1:7849690/36‑1 (MQ=255)
tCCGGCAAAAGGCAAGCCAATGCAGGACGTTGCGcc > 1:4026313/1‑36 (MQ=255)
ccGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCa > 1:4986540/1‑36 (MQ=255)
cGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAg > 1:2326944/1‑36 (MQ=255)
cGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAg < 1:4733915/36‑1 (MQ=255)
ggCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAgg > 1:3711123/1‑36 (MQ=255)
ggCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAgg > 1:7342433/1‑36 (MQ=255)
ggCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAgg > 1:2475384/1‑36 (MQ=255)
ggCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAgg < 1:6449223/36‑1 (MQ=255)
gCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGa > 1:7103494/1‑36 (MQ=255)
gCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGa > 1:535368/1‑36 (MQ=255)
gCAAAAGGCGAGCCAATGCAGGACGGTGCGCCAGGa > 1:8439243/1‑36 (MQ=255)
cAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGaa < 1:1899576/36‑1 (MQ=255)
cAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGaa > 1:4810849/1‑36 (MQ=255)
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GCAGTGCAGCGTCTGCCAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAA > REL606/2728613‑2728683
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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