Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,432,540 | C→A | 19.9% | intergenic (‑150/‑124) | ydbK ← / → ydbJ | fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein/hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,432,540 | 0 | C→A | 19.9% | 2.7 ‑4.1 ‑0.0 | 29 | intergenic (‑150/‑124) | ydbK/ydbJ | fused predicted pyruvate‑flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (14/9): total (14/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.69e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.82e-01 |
CATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGC > REL606/1432505‑1432570
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caTCAGCGTAATGAATGTTTTGATCAAACAGAGGGc > 1:6355107/1‑36 (MQ=255)
tCAGCGTAATGAATGTCTTGATCAAACAGAGGGCaa < 1:2672019/36‑1 (MQ=255)
cAGCGTAATGAATGTTTTGATCAAACAGAGGGCaaa < 1:39309/36‑1 (MQ=255)
cAGCGTAATGAATGTTTTGATCAAACAGAGGGCaaa < 1:244574/36‑1 (MQ=255)
aGCGTAATGAATGTTTTGATCAAACAGAGGGCaaaa > 1:1834965/1‑36 (MQ=255)
aGCGTAATGAATGTTTTGATCAAACAGAGGGCaaaa < 1:590544/36‑1 (MQ=255)
aGCGTAATGAATGTTTTGATCAAACAGAGGGCaaaa > 1:2712957/1‑36 (MQ=255)
cGTAATGAATGTTTTGATCAAACAGAGGGCaaaaaa < 1:6642751/36‑1 (MQ=255)
cGTAATGAATGTTTTGATCAAACAGAGGGCaaaaaa < 1:2323231/36‑1 (MQ=255)
tAATGAATGTTTTGATCAAACAGAGGGCAAAAAAAt > 1:4821152/1‑36 (MQ=255)
tAATGAATGTTTTGATCAAACAGAGGGCAAAAAAAt < 1:148892/36‑1 (MQ=255)
aatgTTTTGATCAAACAGAGGGCAAAAAAATAGCCa > 1:4520897/1‑36 (MQ=255)
aatgTTTTGATAAAAAAGAGGGCAAAAAAATAGCCa < 1:2363041/36‑1 (MQ=37)
atgTTTTGATCAAACAGAGGGCAAAAAAATAGCCAt < 1:2424275/36‑1 (MQ=255)
atgTTTTGATCAAACAGAGGGAAAAAAAATAGCCAt < 1:6919774/36‑1 (MQ=255)
atgTTTTGATAAAAAAGAGGGAAAAAAAATAGCCAt < 1:7443315/36‑1 (MQ=25)
tgTTTTGATAAAAAAGAGGGAAAAAAAATAGCCATa < 1:3019820/36‑1 (MQ=25)
gTTTTGATCAAACAGAGGGCAAAAAAATAGCCATaa > 1:2371099/1‑36 (MQ=255)
gTTTTGATCAAACAGAGGGCAAAAAAATAGCCATaa > 1:5583793/1‑36 (MQ=255)
gTTTTGATCAAACAGAGGGCAAAAAAATAGCCATaa > 1:825184/1‑36 (MQ=255)
ttttGATCAAACAGAGGGCAAAAAAATAGCCATata > 1:3748907/1‑34 (MQ=255)
tttGATCAAACAGAGGGCAAAAAAATAGCCATaaaa > 1:6107443/1‑36 (MQ=255)
tttGAAAAAAAAGAGGGAAAAAAAATAGCCATaaaa < 1:660121/36‑1 (MQ=19)
gATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAg > 1:3993996/1‑36 (MQ=255)
aaaaaAAGAGGAAAAAAAAATAGCCATAAAAAAGTa < 1:4417474/34‑1 (MQ=21)
aaCAGAGGGCAAAAAAATAGCCATAAAAAAGTaaaa > 1:5326389/1‑36 (MQ=255)
aaCAGAGGGCAAAAAAATAGCCATAAAAAAGTaaaa > 1:1182222/1‑36 (MQ=255)
aaagagGGAAAAAAAATAGCCATAAAAAAGTaaaaa < 1:445737/34‑1 (MQ=38)
gagGGCAAAAAAATAGCCATAAAAAAGTAAAAATGc > 1:4676502/1‑36 (MQ=255)
gagGGCAAAAAAATAGCCATAAAAAAGTAAAAATGc > 1:104031/1‑36 (MQ=255)
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CATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGC > REL606/1432505‑1432570
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|