Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,760,369 | 0 | C→A | 8.3% | 0.1 ‑8.1 0.0 | 65 | 408 | ygbN | predicted transporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/8): ref base (39/18): total (39/26) | ||||||||||
Fisher's exact test strand distribution p-value = 3.10e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCG > REL606/2760334‑2760403
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cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.cc < 1:5644998/36‑1 (MQ=255)
ttGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCa > 1:4444362/1‑36 (MQ=255)
ttGCGCCAATCATTGACGGTTTTGCCAAGGTTG.CCa > 1:1856299/1‑36 (MQ=255)
tGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCaa > 1:3148104/1‑36 (MQ=255)
tGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCaa > 1:352732/1‑36 (MQ=255)
gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa < 1:3386348/36‑1 (MQ=255)
gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa > 1:5023908/1‑36 (MQ=255)
gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa < 1:3528522/36‑1 (MQ=255)
cgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaaa > 1:4797658/1‑36 (MQ=255)
gcCAATCATTTACGGTTTTGCCAAGCTTGACCaaaa > 1:4707770/1‑36 (MQ=25)
gcCAATCATTTACGGCTTTGCCAAGGTTG.CCAAAat > 1:2628994/1‑36 (MQ=255)
gcCAACCATTTACGGCTTTGCAAAGGTTG.CCAAAat > 1:5441068/1‑36 (MQ=25)
ccAATCATTTACGGTTTTGCCAAGGTTG.CCAAAata < 1:4194059/36‑1 (MQ=255)
ccAATCATTTACGGTTTTGCCAAGGTTG.CCAAAata > 1:5361296/1‑36 (MQ=255)
cAATCATTTACGGTTTTGCCAAGGTTG.CCAAAatat < 1:4397247/36‑1 (MQ=255)
aaacATTTACGGTTTTGCCAAGGTTG.CCAAAATATc < 1:4584262/33‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAatagc > 1:4781130/1‑34 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATc < 1:4823638/36‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATc > 1:1267833/1‑36 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTG.ACAAAATATc > 1:2915339/1‑36 (MQ=255)
aaTCATTTACGGTTTTGACAAGGTTG.CCAAAATATc < 1:2907031/36‑1 (MQ=255)
aaTCATTTACGGTTTTGACAAGGTTG.CCAAAATATc < 1:3425021/36‑1 (MQ=255)
aacATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg < 1:1664830/34‑1 (MQ=255)
aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg > 1:5763347/1‑36 (MQ=255)
aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg > 1:879649/1‑36 (MQ=255)
aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg > 1:1182369/1‑36 (MQ=255)
tCATTTACGGTTTTGCCAATTTTG.CCAAAATATCGc < 1:5149256/36‑1 (MQ=37)
aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa > 1:5412523/1‑36 (MQ=255)
aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa > 1:2303222/1‑36 (MQ=255)
aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa > 1:1778646/1‑36 (MQ=255)
tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc > 1:584638/1‑36 (MQ=255)
tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc < 1:5645219/36‑1 (MQ=255)
tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc > 1:1053957/1‑36 (MQ=255)
ttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACt > 1:4205648/1‑36 (MQ=255)
tACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTc > 1:3393442/1‑36 (MQ=255)
aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa < 1:1007494/36‑1 (MQ=255)
aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa < 1:5878853/36‑1 (MQ=255)
aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa > 1:4368548/1‑36 (MQ=255)
cGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaa < 1:1241025/36‑1 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCcaa > 1:5292184/1‑36 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa > 1:5700151/1‑36 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa > 1:5444406/1‑36 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa > 1:1804728/1‑36 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa > 1:4397655/1‑36 (MQ=255)
ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa > 1:3931239/1‑36 (MQ=255)
ggTTTTGCAAAGGTTG.CAAAAATATCGCCACTCaaa < 1:4130191/36‑1 (MQ=37)
ttttGCCAAGGTTC.CAAAAATATCGCCACTCAAAtt < 1:1950196/36‑1 (MQ=37)
ttttGCAAAGGTTG.CCAAAATATCGCCACTCAAAtt < 1:1075279/36‑1 (MQ=255)
ttttGCAAAGATTG.CAAAAATATCGCCACTCAAAtt < 1:1384631/36‑1 (MQ=25)
tttGCCAAGGTTG.CCAAAATATCGCCACTCAAAttt > 1:1784166/1‑36 (MQ=255)
tttGCCAAGGTTG.CCAAAATATCGCCACTCAAAttt < 1:2500303/36‑1 (MQ=255)
ttGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTg > 1:3963842/1‑36 (MQ=255)
ttGCCAAGGTTG.CCAAAATATCGCCACTCAAATCTg > 1:1051151/1‑36 (MQ=255)
tGCCAAGGTTG.CCAAAATATCGCCACTCAGAGTTgg > 1:1361881/1‑36 (MQ=37)
gcaaaGGTTG.CAAAAATATCGCCACTCAAATTTGgc < 1:2723017/33‑1 (MQ=37)
gCCAAGGTTG.CAAAAATATCGCCACTCAAATTTGgc < 1:252107/36‑1 (MQ=255)
cAAGGTTG.CCAAAATATCGCCACTCAAATTTGgcct > 1:1735819/1‑36 (MQ=255)
cAAGGTGG.CCAAAATATCGCCACTCAAATTTGgcct > 1:3662529/1‑36 (MQ=255)
aGGTTG.CCAAAATATCGCCACTCAAATTTGgcctgc < 1:329521/36‑1 (MQ=255)
aGGTTG.CCAAAATATCGCCACTCAAATTTGgcctgc < 1:4234540/36‑1 (MQ=255)
ggTTG.CCAAAATATCGCCACTCAAATTTGgcctgcc > 1:662913/1‑36 (MQ=255)
ggTTG.CAAAACTATCGCCACTCAAATTTGgcctgcc < 1:1373756/36‑1 (MQ=37)
ggTTG.CAAAAATATCGCCACTCAAATTTGgcctgcc < 1:2121318/36‑1 (MQ=255)
gTTG.CCAAAATATCGCCACTCAAATTTGgcctgcct > 1:3040445/1‑36 (MQ=255)
gTTG.CAAAAATATCGCCACTCAAATTTGgcctgcct < 1:1636597/36‑1 (MQ=255)
tG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGt > 1:2880608/1‑36 (MQ=255)
ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg < 1:5079533/36‑1 (MQ=255)
ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg > 1:1794236/1‑36 (MQ=255)
ccAAAATATCGCCACTCAAATCTGGCCTGGCTGtgg > 1:3842235/1‑34 (MQ=25)
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CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCG > REL606/2760334‑2760403
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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