Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,048,224 | G→T | 14.8% | Q109K (CAA→AAA) | yihR ← | predicted aldose‑1‑epimerase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,048,224 | 0 | G→T | 14.8% | 2.7 ‑3.1 0.0 | 31 | 325 | yihR | predicted aldose‑1‑epimerase |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (11/15): total (16/15) | ||||||||||
Fisher's exact test strand distribution p-value = 4.34e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGGGTAACGCTGGTGGCGGTTAATTCACTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAATAGCGG > REL606/4048190‑4048259
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aGGGTAACGCTGGTGGCGGTTAATTCACTAATTTGc < 1:2387611/36‑1 (MQ=255)
aGGGGAACGCTGGTGGCGGTTAATTTACTTAATTgt > 1:101071/1‑35 (MQ=16)
gTAACGCTGGTGGCGGTTAATTCACTAATTTGCCAg < 1:309973/36‑1 (MQ=255)
aCGCTGGTGGCGGTTAATTCACTAATTTTCCAGgct > 1:2774717/1‑36 (MQ=37)
cGCTGGTGGCGGTTTATTTTCTGATTTTCCAGtctc > 1:4272694/1‑36 (MQ=16)
cGCTGGTGGCGGCTAATTCCCTAATTTTTCCGtctc > 1:2351340/1‑36 (MQ=16)
gCTGGTGGCGGTTAATTTACTCATTTTCCCGTCTCg > 1:1312890/1‑36 (MQ=19)
cTGGTGGCTGTTAATTCTCTAATTTGCCAGTCTCGc < 1:5394980/36‑1 (MQ=37)
cTGGTGGCGGTTAATTCACTAATTTTCCAGtctctc > 1:5146541/1‑34 (MQ=37)
tggtggCGGTTAATTCACTAATTTGCCAGTCTCGcc < 1:1583506/36‑1 (MQ=255)
ggtggCGGTTAATTCACTAATTTGCCAGTCTCGCCa < 1:2870150/36‑1 (MQ=255)
gCGGTTAATTCACTAATTGGACAGTCTCGACAGGCa > 1:1929570/1‑36 (MQ=25)
cGGTTAATTCACTAATTTGCCAGTCTCGCCAGGCaa > 1:1008153/1‑36 (MQ=255)
ggTTAATTCACTAATTTGCCAGTCTCGCCAGGCAag < 1:816734/36‑1 (MQ=255)
ggTTAATTCACTAATTTGCCAGTCTCGCCAGGCAag > 1:4774025/1‑36 (MQ=255)
ggTTAATTCACTAATTTGCCAGTCTCGCCAGGCAag > 1:2055885/1‑36 (MQ=255)
gTTAATTCACTAATTTGCCAGTCTCGCCAGGCAagc < 1:5097339/36‑1 (MQ=255)
ttAATTCACTAATTTGCCAGTCTCTCCAGGCAagca > 1:1099019/1‑36 (MQ=255)
ttAATTCACTAATTTGCCAGTCTCGCCAGGCAagca > 1:148680/1‑36 (MQ=255)
aaTTCACTAATTTGCCAGTCTCGCCAGGCAagcagc < 1:1034801/36‑1 (MQ=255)
ttCACTAATTTGCCAGTCTCGCCAGGCAAGCAGccc > 1:2271780/1‑36 (MQ=255)
ttCACTAATTTGCCAGTCTCGCCAGGCAAGCAGccc < 1:1445753/36‑1 (MQ=255)
aCTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTg < 1:2807174/36‑1 (MQ=255)
aCTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTg < 1:318656/36‑1 (MQ=255)
cTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGa < 1:3005662/36‑1 (MQ=255)
cTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGa < 1:256169/36‑1 (MQ=255)
tAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGaa < 1:4738954/36‑1 (MQ=255)
aaTTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAAt > 1:3810321/1‑36 (MQ=255)
aaTTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAAt < 1:313246/36‑1 (MQ=255)
aTTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAATa > 1:4402738/1‑36 (MQ=255)
aTTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAATa > 1:4522593/1‑36 (MQ=255)
ttGCCAGTCTCGCCAGGCAAGCAGCCCGGGAATAGc > 1:4011731/1‑36 (MQ=255)
gCCAGTCTCGCCAGGCAAGCAGCCCGTGAATAGCgg > 1:1731344/1‑36 (MQ=255)
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AGGGTAACGCTGGTGGCGGTTAATTCACTAATTTGCCAGTCTCGCCAGGCAAGCAGCCCGTGAATAGCGG > REL606/4048190‑4048259
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|