Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 92.9% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)51 (0.900) 31/64 NT 89.5% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 6 (0.100)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =2 (0.040)54 (0.960) 37/64 NT 96.4% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 118 total aligned reads displayed.

CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560
                                   |                                   
tccatttcatcgtccaacaaaatgggtgcagtacat                                     >  1:2610636‑M1/36‑36 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     >  1:7148240‑M1/36‑36 (MQ=255)
cTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCAt                                     <  1:1415732/36‑1 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                    >  1:7538639‑M1/35‑36 (MQ=255)
   cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                  >  1:577289‑M2/1‑35 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  >  1:4412053‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  >  1:1495376‑M1/33‑36 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 <  1:294064‑M1/5‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 >  1:7932173‑M1/32‑36 (MQ=255)
    ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGtg                                 <  1:5487475‑M2/36‑3 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                <  1:6347382‑M1/6‑1 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                >  1:811096‑M1/31‑36 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                <  1:1036401‑M1/6‑1 (MQ=255)
     tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                >  1:1834476‑M2/1‑33 (MQ=255)
     tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                >  1:3542250‑M2/1‑33 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaTGGTCGc                               >  1:8192928‑M1/30‑36 (MQ=255)
      tcatcgtccaacaaaatgggcgcagtacaTGGTCGc                               <  1:8456442‑M1/7‑1 (MQ=255)
      ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgta                               >  1:882895‑M2/1‑32 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                              <  1:8385343‑M2/36‑6 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                              <  1:4727906‑M2/36‑6 (MQ=255)
         tGTTTGCTTTAAAGGTATTGGCTCCATGGtgtactg                            >  1:4293151‑M2/1‑29 (MQ=255)
         tGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCag                            >  1:7369210/1‑36 (MQ=255)
          gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                           >  1:6686219‑M2/1‑28 (MQ=255)
          cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                           >  1:2246725‑M1/26‑36 (MQ=255)
          cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                           <  1:4008765‑M1/11‑1 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                          <  1:1450697‑M2/36‑10 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                          >  1:7391684‑M1/25‑36 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                          <  1:5893589‑M1/12‑1 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  1:2886011‑M2/1‑26 (MQ=255)
            tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                         >  1:6437998‑M1/24‑36 (MQ=255)
            tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                         <  1:7783581‑M1/13‑1 (MQ=255)
             tGCTTTAAAGGTATTGGCTCCGTGGtgtactgaccc                        <  1:6685230‑M2/36‑12 (MQ=255)
             tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                        <  1:6259013‑M2/36‑12 (MQ=255)
             tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                        <  1:2648941‑M2/36‑12 (MQ=255)
             ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                        <  1:1899667‑M1/14‑1 (MQ=255)
             ccaacaaaatgggcgcagtacaTGGTCGCCagaaag                        <  1:964202‑M1/14‑1 (MQ=255)
              gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                       >  1:2631667‑M2/1‑24 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                       >  1:387179‑M1/22‑36 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                       <  1:6701061‑M1/15‑1 (MQ=255)
               cTTTAAAGGTATTGGCTCCATGGTCGCCagaaagaa                      <  1:8114253/36‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      <  1:4579496‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      <  1:7900082‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      <  1:5104438‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagcacaTGGTCGCCagaaagaa                      <  1:127176‑M1/16‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                     <  1:1072753‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                     <  1:8317570‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                     <  1:7409687‑M1/17‑1 (MQ=255)
                acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                     <  1:6811842‑M1/17‑1 (MQ=255)
                 ttAAAGGTATTGGCTCCATGGtgtactgaccccaaa                    <  1:7462325‑M2/36‑16 (MQ=255)
                 ttAAAGGTATTGGCTCCATGGtgtactgaccccaaa                    >  1:3264647‑M2/1‑21 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                    >  1:5054637‑M1/19‑36 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   <  1:1290624‑M2/36‑17 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   <  1:3915687‑M2/36‑17 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   <  1:3888706‑M1/19‑1 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   >  1:4868053‑M1/18‑36 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   <  1:5787654‑M1/19‑1 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                  <  1:5201900‑M1/20‑1 (MQ=255)
                    aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                 <  1:7902749‑M1/21‑1 (MQ=255)
                    aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                 <  1:6576740‑M1/21‑1 (MQ=255)
                    aaGGTATTGGCTCCATGGtgtactgaccccaaaaag                 >  1:2752268‑M2/1‑18 (MQ=255)
                      tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc               <  1:5656971‑M1/23‑1 (MQ=255)
                      ggTATTGGCTCCATGGtgtacttaccccaaaaagtt               <  1:4854135‑M2/36‑21 (MQ=255)
                      ggTATTGGCTCCATGGtgtactgaccccaaaaagtt               >  1:7984165‑M2/1‑16 (MQ=255)
                      ggTATTGGCTCCATGGtgtactgaccccaaaaagtt               >  1:2176114‑M2/1‑16 (MQ=255)
                      ggTATTGGCTCCATGGtgtactgaccccaaaaagtt               <  1:3277937‑M2/36‑21 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc              >  1:7004431‑M1/13‑36 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              <  1:5203168‑M2/36‑22 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:5233535‑M2/1‑15 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:66789‑M2/1‑15 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:5492795‑M2/1‑15 (MQ=255)
                         gtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAt            >  1:5179441‑M1/11‑36 (MQ=255)
                         aTTGGCTCCATGGtgtactgaccccaaaaagttgga            >  1:69965‑M2/1‑13 (MQ=255)
                         aTTGGCTCCATGGtgtactgaccccaaaaagttgga            >  1:3239650‑M2/1‑13 (MQ=255)
                         aTTGGCTCCATGGtgtactgaccccaaaaagttgga            >  1:6000936‑M2/1‑13 (MQ=255)
                          ttGGCTCCATGGtgtactgaccccaaaaagttggac           >  1:1602284‑M2/1‑12 (MQ=255)
                          tgcagtacaTGGTCGCCATAAAGAAAATGCTCCAtt           >  1:2778848‑M1/10‑36 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          <  1:6629796‑M1/28‑1 (MQ=255)
                            ggCTCCATGGtgtactgaccccaaaaagttggacag         >  1:6026328‑M2/1‑10 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt        <  1:3533066‑M2/36‑28 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt        >  1:2351307‑M2/1‑9 (MQ=255)
                             agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg        <  1:6894526‑M1/30‑1 (MQ=255)
                              gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg       <  1:5382006‑M1/31‑1 (MQ=255)
                              gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg       >  1:6625882‑M1/6‑36 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      >  1:940919‑M1/5‑36 (MQ=255)
                               tCCATGGtgtactgaccccaacaagttggacagtta      >  1:3311355‑M2/1‑7 (MQ=255)
                               tCCATGGtgtactgaccccaaaaagttggacagtta      >  1:6518121‑M2/1‑7 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     <  1:2423211‑M2/36‑31 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     <  1:1549133‑M2/36‑31 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     >  1:5320673‑M1/4‑36 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  1:8315221‑M1/33‑1 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac    <  1:1965887‑M1/34‑1 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa    >  1:6770482‑M2/1‑5 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa    >  1:8212271‑M2/1‑5 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa    >  1:142557‑M2/1‑5 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa    >  1:2317534‑M2/1‑5 (MQ=255)
                                 cATGGtgtactgaccccaaaaagttggacagttaaa    <  1:487499‑M2/36‑32 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaaa   <  1:2806383‑M2/36‑33 (MQ=255)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca   >  1:137505‑M1/2‑36 (MQ=255)
                                   TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa  <  1:130505‑M1/36‑1 (MQ=255)
                                   TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa  <  1:5408472‑M1/36‑1 (MQ=255)
                                   |                                   
CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG