Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,509,366 | +A | 3.6% | coding (814/996 nt) | gntR ← | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,509,366 | 1 | .→A | 3.6% | 2.2 ‑1.9 ‑0.0 | 56 | coding (814/996 nt) | gntR | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (0/2): ref base (34/20): total (34/22) | ||||||||||
Fisher's exact test strand distribution p-value = 1.50e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.19e-01 |
CATCACCTGACCAATGTCATGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACTTTTAACCCCAGAC > REL606/3509331‑3509401
|
cATCACCTGACCAATGTCATGACCGTGGAAA.CCGGc > 1:224710/1‑36 (MQ=255)
cATCACCTGACCAATGTCATGACCGTGGAAA.CCGGc > 1:2736605/1‑36 (MQ=255)
aTCACCTGACCAATGTCATGACCGTGGAAA.CCGGC.a > 1:6382916/1‑36 (MQ=255)
aTCACCTGACCAATGTCATGACCGTGGAAA.CCGGC.a > 1:6381819/1‑36 (MQ=255)
aTCACCTGACCAACGACATGACCCTGGAAA.CCGGC.a > 1:5275683/1‑36 (MQ=21)
aTCACCTGACAAATGTCATGACCGTGGAAA.CCGGC.a < 1:5223238/36‑1 (MQ=255)
cACCTGACCAATGTCATGACCGTGGAAA.CCGGC.AAt < 1:3039098/36‑1 (MQ=255)
aCCTGACCACTGCCATGACCGTGGAAA.CCGGC.AATc < 1:7436392/36‑1 (MQ=37)
aCCTGACCAATGTCATGACCGTGGAAA.CCGGC.AATc < 1:1801677/36‑1 (MQ=255)
aCCTGACCAATGTCATGACCGTGGAAA.CCGGC.AATc < 1:4949268/36‑1 (MQ=255)
aCCTGACCAATGTCATGACCGTGGAAA.CCGGC.AATc > 1:4406842/1‑36 (MQ=255)
aCCTGACAAATGTCATGACCGTGGAAA.CCGGC.AATc < 1:3452599/36‑1 (MQ=255)
ccTGACCAATGTCATGACCGTGGAAA.CCGGC.AATCg > 1:6178695/1‑36 (MQ=255)
tGACCAATGTCATGACCGTGGAAA.CCGGC.AATCGcc < 1:933776/36‑1 (MQ=255)
tGACCAATGTCATGACCGTGGAAA.CCGGC.AATCGcc < 1:8353783/36‑1 (MQ=255)
tGACCAATGTCATGACCGTGGAAA.CCGGC.AATCGcc < 1:537133/36‑1 (MQ=255)
gACCAATGTCATGACCGTGGAAA.CCGGC.AATCGCCa > 1:2384125/1‑36 (MQ=255)
aCCAATGTCATGACCGTGGAAA.CCGGC.AATCGCCat > 1:3130735/1‑36 (MQ=255)
ccAATGTCATGACCATGGAAA.CCGGC.AATCGCCata > 1:6506713/1‑36 (MQ=255)
cAATGTCATGACCGTGGAAA.CCGGC.AATCGCCatat < 1:6301403/36‑1 (MQ=255)
aaTGTCATGACCGTGGAAA.CCGGT.AATCGCCATATc > 1:4925380/1‑36 (MQ=255)
aTGTCATGACCGTGGAAA.CCGGC.AATCGCCATATCg < 1:2753711/36‑1 (MQ=255)
aTGTCAGGACCGGGGAAA.CCGGA.AATCGCCATATCg < 1:6273300/36‑1 (MQ=25)
tGTCATGACCGTGGAAA.CCGGC.AATCGCCATATCGt > 1:3080866/1‑36 (MQ=255)
tGTCATGACCGTGGAAA.CCGGC.AATCGCCATATCGt > 1:6454602/1‑36 (MQ=255)
gTCATGACCGTGGAAA.CCGGC.AATCGCCATATCGTc > 1:8358278/1‑36 (MQ=255)
cATGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAg > 1:4210450/1‑36 (MQ=255)
aaTGACCGTGAAAA.CCGGA.AATCGCCATATCGTCAg < 1:733731/35‑1 (MQ=37)
aTGACCGTGGAAA.CCGGC.AATCGCCATATCGCCAgg > 1:7066913/1‑36 (MQ=255)
tGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGa > 1:6269007/1‑36 (MQ=255)
tGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGa > 1:6787026/1‑36 (MQ=255)
tGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGa > 1:4553279/1‑36 (MQ=255)
gACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGaa > 1:8007028/1‑36 (MQ=255)
gACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGaa > 1:7184465/1‑36 (MQ=255)
gACCGTGGAAA.CCGGC.AAGCGCCATATCGCCAGGaa > 1:4230010/1‑36 (MQ=37)
gACCGTGAAAA.CCGGA.AATCGCCATATCGTCAGGaa < 1:141405/36‑1 (MQ=37)
gACCGGGAAAA.CCGGCAAATCGCCATATCGTCAGGa < 1:6007151/36‑1 (MQ=16)
acccGGGGAAACCCGGA.AATCGCCATATCGTCAGGa < 1:4459204/34‑1 (MQ=16)
ccGTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACt > 1:5928307/1‑36 (MQ=255)
cggggAAA.ACGGCAAATCGCCATATCGTCAGGAACt < 1:6043263/33‑1 (MQ=16)
cGTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACtt > 1:4450884/1‑36 (MQ=255)
cGTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACtt > 1:5592037/1‑36 (MQ=255)
ggggAAA.CCGGA.AATCGCCATATCGTCAGGAACttt < 1:8320563/34‑1 (MQ=37)
gTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACttt > 1:776201/1‑36 (MQ=255)
gTGGAAA.CCGGA.AATCGCCATATCGTCAGGAACttt < 1:1081526/36‑1 (MQ=255)
tGGAAA.CCGGC.AATCGCCATATCGTCAGGAACtttt > 1:4003278/1‑36 (MQ=255)
tGGAAA.CCGGC.AATCGCCATATCGTCAGGAACtttt > 1:1647565/1‑36 (MQ=255)
tGGAAA.CCGGC.AATCGCCATATCGTCAGGAACtttt > 1:2825963/1‑36 (MQ=255)
gAAA.CCGGC.AATCGCCATATCGTCAGGAACTTTTaa > 1:4008998/1‑36 (MQ=255)
aaaa.CCGGC.AATCGCCATATCGTCAGGAACTTTTaa < 1:813990/35‑1 (MQ=255)
aaaa.CCGGA.AATCGCCATATCGTCAGGAACTTTTaa < 1:6166201/35‑1 (MQ=255)
aaa.ACGGC.AATCGCCATATCGTCATGCATTTTTAAc > 1:4501239/1‑36 (MQ=19)
a.CCGGC.AATCGCCATATCGTCAGGAACTTTTAAccc > 1:5692045/1‑36 (MQ=255)
a.CCGGC.AATCGCCATATCGTCAGGAACTTTTAAccc > 1:2356224/1‑36 (MQ=255)
a.CCGGC.AATCGCCATATCGTCAGGAACTTTTAAccc > 1:1255517/1‑36 (MQ=255)
ccGGC.AATCGCCATATCGTCAGGAACTTTTAAcccc > 1:6625160/1‑36 (MQ=255)
ccGAC.AATCGCCATATCGTCAGGAACTTTTAAcccc < 1:8344489/36‑1 (MQ=255)
gggC.AATCGCCATATCGTCAGGAACTTTTAACCCCa < 1:6870861/35‑1 (MQ=255)
cgac.AATCGCCATATCGTCAGGAACTTTTAACCCCa < 1:1547546/33‑1 (MQ=255)
cGGC.AATCGCCATATCGTCAGGAACTTTTAACCCCa > 1:4546176/1‑36 (MQ=255)
gac.AATCGCCATATCGTCAGGAACTTTTAACCCCAg < 1:7721115/34‑1 (MQ=255)
gC.AATCGCCATATCGTCAGGAACTTTTAACCCCAGa > 1:448403/1‑36 (MQ=255)
gC.AATCGCCATATCGTCAGGAACTTTTAACCCCAGa > 1:1351975/1‑36 (MQ=255)
gC.AATCGCCATATCGTCAGGAACTTTTAACCCCAGa > 1:1355974/1‑36 (MQ=255)
c.AATCGCCATATCGTCAGGAACTTTTAACCCCAGAc > 1:3868399/1‑36 (MQ=255)
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CATCACCTGACCAATGTCATGACCGTGGAAA.CCGGC.AATCGCCATATCGTCAGGAACTTTTAACCCCAGAC > REL606/3509331‑3509401
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|