New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1732688 =44 (0.940)5 (0.110) 3/54 NT 14.5% intergenic (‑280/‑277) ydhZ/pykF hypothetical protein/pyruvate kinase
?REL606 2148171 = 15 (0.250)coding (501/3795 nt) molR molybdate metabolism regulator

ATTTATTGTCTAACAAGTTGTATATTTTTTGAAACGCTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGT  >  REL606/1732653‑1732723
                                   |                                   
gccattctaaagaacaggcgctgaagtcaaatgtgg                                     <  1:4860031‑M1/1‑1 (MQ=255)
aTTTATTGTCTAACAAGTTGTATATTTTTTTAAACg                                     >  1:2854905/1‑36 (MQ=255)
aTTTATTGTCTAACAAGTTGTATATTTTTTGAAACg                                     >  1:158884/1‑36 (MQ=255)
aTTTATTGTCTAACAAGTTGTATATTTTTTGAAACg                                     <  1:1713346/36‑1 (MQ=255)
aTTTATTGTCTAACAAGTTGTATATTTTTTGAAACg                                     <  1:6830014/36‑1 (MQ=255)
aTTTATTGTCTAACAAGTTGTATATTTTTTGAAACg                                     <  1:6115497/36‑1 (MQ=255)
  cattctaaagaacaggcgctgaagtcaaatgtgGCt                                   >  1:7022568‑M1/34‑36 (MQ=255)
  cattctaaagaacaggcgctgaagtcaaatgtgGCt                                   <  1:6446110‑M1/3‑1 (MQ=255)
   tATTGTCTAACAAGTTGTATATTTTTTTAAACTCtg                                  >  1:480471/1‑36 (MQ=38)
   tATTGTCTAACAAGTTGTATATTTTTTGAAACGCtg                                  >  1:922026/1‑36 (MQ=255)
   tATTGTCTAACAAGTTGTATATTTTTTGAAACGCtg                                  <  1:7769092/36‑1 (MQ=255)
   tATTGTCTAACAAGTTGTATATTTTTTGAAACGCtg                                  >  1:3781470/1‑36 (MQ=255)
   attctaaagaacaggcgctgaagtcaaatgtgGCtg                                  <  1:4484206‑M1/4‑1 (MQ=255)
   attctaaagaacaggcgctgaagtcaaatgtgGCtg                                  <  1:4330357‑M1/4‑1 (MQ=255)
    ttctaaagaacaggcgctgaagtcaaatgtgGctgg                                 <  1:3874108‑M1/5‑2 (MQ=255)
    ttctaaagaacaggcgctgaagtcaaatgtgGctgg                                 <  1:3460935‑M1/5‑2 (MQ=255)
    ttctaaagaacaggcgctgaagtcaaatgtgGCtgt                                 >  1:5730412‑M1/32‑36 (MQ=255)
     ttGTCTAACAAGTTGTATATTTTTTGAAACGCtgtt                                <  1:5800624/36‑1 (MQ=255)
     tctaaagaacaggcgctgaagtcaaatgtggctggt                                <  1:4283149‑M1/6‑3 (MQ=255)
     tctaaagaacaggcgctgaagtcaaatgtggctggt                                <  1:3864748‑M1/6‑3 (MQ=255)
     tctaaagaacaggcgctgaagtcaaatgtggctggt                                <  1:2808762‑M1/6‑3 (MQ=255)
      tGTCTAACAAGTTGTATATTTTTTGAAACGCtgttt                               >  1:1946324/1‑36 (MQ=255)
      tGTCTAACAAGTTGTATATTTTTTGAAAAGCtgttt                               >  1:2502552/1‑36 (MQ=255)
      ctaaagaacaggcgctgaagtcaaatgtgGCtgttt                               >  1:5407289‑M1/30‑36 (MQ=255)
        tCTAACAAGTTGTATATTTTTTGAAACGCtgttttt                             <  1:743403/36‑1 (MQ=255)
        tCTAACAAGTTGTATATTTTTTGAAACGCtgttttt                             <  1:7399017/36‑1 (MQ=255)
        tCTAACAAGTTGTATATTTTTTGAAACGCtgttttt                             <  1:661361/36‑1 (MQ=255)
        aaagaacaggcgctgaagtcaaatgtgGCtggtttt                             <  1:6895226‑M1/9‑1 (MQ=255)
        aaagaacaggcgctgaagtcaaatgtgGCtggtttt                             <  1:7180331‑M1/9‑1 (MQ=255)
        aaagaacaggcgctgaagtcaaatgtgGCtggtttt                             <  1:3340765‑M1/9‑1 (MQ=255)
         cTAACAAGTTGTATATTTTTTGAAACGCtgtttttg                            >  1:195438/1‑36 (MQ=255)
           aaCAAGTTGTATATTTTTTGAAACGCtgtttttgtt                          >  1:587387/1‑36 (MQ=255)
           aaCAAGTTGTATATTTTTTGAAACGCtgtttttgtt                          >  1:3016478/1‑36 (MQ=255)
             cAAGTTGTATATTTTTTGAAACGCtgtttttgtttt                        <  1:510283/36‑1 (MQ=255)
              aaGTTGTATATTTTTTGAAACGCTGTTTTTGTTTTc                       >  1:1290050/1‑36 (MQ=255)
               aggcgctgaagtcaaatgtgGCTGTTTTTTTTTTcc                      <  1:5069743‑M1/16‑1 (MQ=255)
                gTTGTATATTTTTTGAAACGCTGTTTTTGTTTTCCt                     <  1:3574294/36‑1 (MQ=255)
                 ttGTATATTTTTTGAAACGCTGTTTTTGTTTTCCtt                    >  1:6426603/1‑36 (MQ=255)
                  tGTATATTTTTTGAAACGCTGTTTTTGTTTTCCttt                   <  1:4569295/36‑1 (MQ=255)
                  tGTATATTTTTTGAAACGCTGTTTTTGTTTTCCttt                   <  1:3572287/36‑1 (MQ=255)
                   gctgaagtcaaatgtgGCTGTTTTTTTTTTCCtttt                  <  1:6876404‑M1/20‑1 (MQ=255)
                   gTATATTTTTTGAAACGCTGTTTTTGTTTTCCtttt                  >  1:6715908/1‑36 (MQ=255)
                   gTATATTTTTTGAAACGCTGTTTTTGTTTTCCtttt                  >  1:7052303/1‑36 (MQ=255)
                   gTATATTTTTTGAAACGCTGTTTTTGTTTTCCtttt                  >  1:5742692/1‑36 (MQ=255)
                    tataTTTTTTGAAACGCTGTTTTTGTTTTCCTTTTg                 >  1:5777800/1‑36 (MQ=255)
                     atatTTTTTGAAACGCTGTTTTTGTTTTCCTTTTgg                <  1:1101662/36‑1 (MQ=255)
                      tatTTTTTGAAACGCTGTTTTTGTTTTCCTTTTGGa               >  1:5106997/1‑36 (MQ=255)
                        ttttttGAAACGCTGTTTTTGTTTTCCTTTTGGAtt             >  1:2585617/1‑36 (MQ=255)
                        ttttttGAAACGCTGTTTTTGTTTTCCTTTTGGAtt             <  1:4655160/36‑1 (MQ=255)
                        ttttttGAAACGCTGTTTTTGTTTTCCTTTTGGAtt             <  1:6854927/36‑1 (MQ=255)
                        ttttttGAAACGCTGTTTTTGTTTTCCTTTTGGAtt             <  1:7013252/36‑1 (MQ=255)
                         tttttGAAACGCTGTTTTTGTTTTCCTTTTGGATTa            <  1:2661307/36‑1 (MQ=255)
                         tttttGAAACGCTGTTTTTGTTTTCCTTTTGGATTa            <  1:2100354/36‑1 (MQ=255)
                         tttttGAAACGCTGTTTTTGTTTTCCTTTTGGATTa            >  1:3842252/1‑36 (MQ=255)
                          ttttGAAACGCTGTTTTTGTTTTCCTTTTGGATTaa           <  1:42684/36‑1 (MQ=255)
                           tttGAAACGCTGTTTTTGTTTTCCTTTTGGATTAAt          >  1:6980481/1‑36 (MQ=255)
                           tttGAAACGCTGTTTTTGTTTTCCTTTTGGATTAAt          >  1:5872392/1‑36 (MQ=255)
                            ttGAAACGCTGTTTTTGTTTTCCTTTTGTATTAAtt         >  1:2343949/1‑36 (MQ=255)
                            ttGAAACGCTGTTTTTGTTTTCCTTTTGGATTAAtt         >  1:3865634/1‑36 (MQ=255)
                             tGAAACGCTGTTTTTGTTTTCCTTTTGTATTAAttt        >  1:7514713/1‑36 (MQ=255)
                              gAAACGCTGTTTTTGTTTTGCTTTTGGATTAATTTc       >  1:3454063/1‑36 (MQ=255)
                              gAAACGCTGTTTTTGTTTTCCTTTTGGATTAATTTc       >  1:5750602/1‑36 (MQ=255)
                              gAAACGCTGTTTTTGTTTTCCTTTTGGATTAATTTc       <  1:7653373/36‑1 (MQ=255)
                               aaaCGCTGTTTTTGTTTTCCTTTTGGATTAATTTct      <  1:6305602/36‑2 (MQ=255)
                               aaaCGCTGTTTTTGTTTTCCTTTTGGATTAATTTCa      >  1:7708215/1‑36 (MQ=255)
                                  cGCTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCg   >  1:791454/1‑36 (MQ=255)
                                   GCTGTTTTTGTTTTCCTTTTGGATTAATTTCATCGt  <  1:4006382‑M1/36‑1 (MQ=255)
                                   GCTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGt  >  1:3089303‑M1/1‑36 (MQ=255)
                                   GCTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGt  >  1:1037925‑M1/1‑36 (MQ=255)
                                   |                                   
ATTTATTGTCTAACAAGTTGTATATTTTTTGAAACGCTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGT  >  REL606/1732653‑1732723

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG