New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 208161432 (0.670)6 (0.130) 4/58 NT 14.3% coding (755/1353 nt) yegD predicted chaperone
?REL606 4281474 = 40 (0.700)coding (427/2052 nt) yjcQ predicted multidrug efflux system component

AGCCTGCTGGGTCACAGTGGTTGTCGTATTGGCGGTAACGATCTGGATATCGCCCTGGCGTTTAAAAACC  >  REL606/2081580‑2081649
                                  |                                   
agccTGCTGGGTCACGGTGGTTGTCGTATTGGCGGt                                    <  1:2497737/36‑1 (MQ=255)
agccTGCTGGGTCACAGTGGTTGTCGTATTGGCGGg                                    >  1:2990553‑M1/1‑35 (MQ=255)
 gccTGCTGGGTCACAGTGGTTGTCGTATTGGCGGgg                                   >  1:5425545‑M1/1‑34 (MQ=255)
  ccTGCTGGGTCACAGTGGTTGTCGTATTGGCGGTaa                                  >  1:884335/1‑36 (MQ=255)
   ctgctgGGTCACAGTGGTTGTCGTATTGGCGGgctt                                 >  1:5631277‑M1/1‑32 (MQ=255)
   ctgctgGGTCACAGTGGTTGTCGTATTGGCGGTAAc                                 <  1:2452462/36‑1 (MQ=255)
   ctgctgGGTCACAGTGGTTGTCGTATTGGCGGTAAc                                 <  1:6305865/36‑1 (MQ=255)
    tgctgGGTCACAGTGGTTGTCGTATTGGCGGTAACg                                <  1:5720735/36‑1 (MQ=255)
     gctgGGTCACAGTGGTTGTCGTATTGGCGGTAACGa                               <  1:7491208/36‑1 (MQ=255)
      ctgGGTCACAGTGGTTGTCGTATTGGCGGggtaggg                              >  1:6591588‑M1/1‑29 (MQ=255)
       tgGGTCACAGTGGTTGTCGTATTGGCGGggaaggtt                             >  1:5154195‑M1/1‑28 (MQ=255)
       tgGGTCACAGTGGTTGTCGTATTGGCGGTAACGATc                             <  1:40168/36‑1 (MQ=255)
        gggTCACCGTGGTTGTCGTATGGGCGGTAACGATCt                            <  1:4454016/36‑1 (MQ=37)
        gggTCACAGTGGTTGTCGTATTGGCGGTAACGATCt                            <  1:142886/36‑1 (MQ=255)
         ggTCACAGTGGTTGTCGTATTGGCGGggaaggtctg                           >  1:3828513‑M1/1‑26 (MQ=255)
            cacaGTGGTTGTCGTATTGGCGGTAACGATCTGGat                        <  1:5404524/36‑1 (MQ=255)
            cacaGTGGTTGTCGTATTGGCGGTAACGATCTGGat                        <  1:343607/36‑1 (MQ=255)
               aatGGTTTTCGTATTGGCGGTAACGATCTGGATATc                     <  1:2909146/34‑1 (MQ=37)
               aGTGGTTGTCGTATTGGCGGTAACGATCTGGATATc                     <  1:6622219/36‑1 (MQ=255)
                   gTTGTCGTATTGGCGGTAACGATCTGGATATCGccc                 <  1:3832354/36‑1 (MQ=255)
                   gTTGTCGTATTGGCGGTAACGATCTGGATATCGccc                 <  1:1317396/36‑1 (MQ=255)
                     tGTCGTATTGGCGGTAACGATCTGGATATCGCCCTg               <  1:4337575/36‑1 (MQ=255)
                     tGTCGTATTGGCGGTAACGATCTGGATATCGCCCTg               <  1:877775/36‑1 (MQ=255)
                      gTCGTATTGGCGGTAACGATCTGGATATCGCCCTgg              <  1:1314241/36‑1 (MQ=255)
                      gTCGTATTGGCGGTAACGATCTGGATATCGCCCTgg              <  1:672815/36‑1 (MQ=255)
                       tCGTATTGGCGGTAACGATCTGGATATCGCCCTGGc             <  1:4114061/36‑1 (MQ=255)
                       tCGTATTGGCGGTAACGATCTGGATATCGCCCTGGc             <  1:2877479/36‑1 (MQ=255)
                       tCGTATTGGCGGTAACGATCTGGATATCGCCCTGGc             <  1:5435050/36‑1 (MQ=255)
                       tCGTATTGGCGGTAACGATCTGGATATCGCCCTGGc             <  1:7483608/36‑1 (MQ=255)
                        cGTATTGGCGGTAACGATCTGGATATCGCCCTGGCg            <  1:4836230/36‑1 (MQ=255)
                         gTATTGGCGGTAACGATCTGGATATCGCCCTGGCGt           <  1:832050/36‑1 (MQ=255)
                           aTTGGCGGTAACGATCTGGATATCGCCCTGGCGttt         <  1:6471931/36‑1 (MQ=255)
                           aTTGGCGGTAACGATCTGGATATCGCCCTGGCGttt         <  1:1184554/36‑1 (MQ=255)
                           aTTGGCGGTAACGATCTGGATATCGCCCTGGCGttt         <  1:481466/36‑1 (MQ=255)
                           aTTGGCGGTAACGATCTGGATATCGCCCTGGCGttt         <  1:1912579/36‑1 (MQ=255)
                            ttGGCGGTAACGATCTGGATATCGCCCTGGCGTTTa        <  1:1220934/36‑1 (MQ=255)
                             tGGCGGTAACGATCTGGATCTCGCCCTGGCGTTTaa       >  1:2189029/1‑36 (MQ=255)
                             tGGCGGTAACGATCTGGATATCGCCCTGGCGTTTaa       <  1:7199051/36‑1 (MQ=255)
                              ggCGGggaaggtttgcccgtaaatagcgacaatggc      <  1:3790838‑M1/36‑32 (MQ=255)
                              ggCGGTAACGATCTGGATATCGCCCTGGCGTTTaaa      >  1:993046/1‑36 (MQ=255)
                              ggCGGTAACGATCTGGATATCGCCCTGGCGTTTaaa      >  1:1290530/1‑36 (MQ=255)
                              ggCGGTAACGATCTGGATATCGCCCTGGCGTTTaaa      <  1:6097106/36‑1 (MQ=255)
                               gCGGggaaggtttgcccgtaaatagcgacaatggcg     <  1:6192776‑M1/36‑33 (MQ=255)
                               gCGGTAACGATCTGGATATCGCCCTGGCGTTTaaaa     >  1:6388834/1‑36 (MQ=255)
                                cGGTAACGATCTGGATATCGCCCTGGCGTTTaaaaa    >  1:7046755/1‑36 (MQ=255)
                                 ggggaaggtttgcccgtaaatagcgacaatggcgac   >  1:6553071‑M1/1‑2 (MQ=255)
                                 ggggaaggtttgcccgtaaatagcgacaatggcgac   <  1:4640051‑M1/36‑35 (MQ=255)
                                 ggggaaggtttgcccgtaaatagcgacaatggcgac   <  1:2087705‑M1/36‑35 (MQ=255)
                                 ggTAACGATCTGGATATCGCCCTGGCGTTTAAAAAc   >  1:6316658/1‑36 (MQ=255)
                                  gggaaggtttgcgcgtaaatagcgacaatggcgacg  <  1:7503895‑M1/36‑36 (MQ=255)
                                  gggaaggtttgcccgtaaatagcgacaatggcgacg  >  1:3705480‑M1/1‑1 (MQ=255)
                                  gggaaggtttgcccgtaaatagcgacaatggcgacg  <  1:5620505‑M1/36‑36 (MQ=255)
                                  |                                   
AGCCTGCTGGGTCACAGTGGTTGTCGTATTGGCGGTAACGATCTGGATATCGCCCTGGCGTTTAAAAACC  >  REL606/2081580‑2081649

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG