New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1109621 =29 (0.500)7 (0.120) 5/70 NT 17.9% coding (461/1359 nt) ycdT predicted diguanylate cyclase
?REL606 = 3061117 35 (0.610)coding (752/1173 nt) ECB_02854 conserved hypothetical protein

CAATTTATTTTCCAAAAAAATGACTTTGTGCATAAGTTTGTTTTTTGTTTTTGGGGGGCCGATAGTTGCT  >  REL606/1109586‑1109655
                                   |                                  
ggcaccttcagtaaaagtctggcctcgattggcggg                                    <  1:3643962‑M1/1‑1 (MQ=255)
ggcaccttcagtaaaagtctggcctcgattggaggg                                    <  1:5045887‑M1/1‑1 (MQ=255)
cAATTTATTTTACAAAAAAATGACTTTGTGCATAAg                                    <  1:252814/36‑1 (MQ=255)
 gcaccttcagtaaaagtctggcctcgattggcgggt                                   <  1:1275845‑M1/2‑1 (MQ=255)
 aaTTTATTTTCCAAAAAAATGACTTTGTGCATAAgt                                   >  1:6289410/1‑36 (MQ=255)
  caccttcagtaaaagtctggcctcgattggcgggtt                                  <  1:4906535‑M1/3‑1 (MQ=255)
   tttatttTCCAAAAAAATGACTTTGTGCATAAgttt                                 <  1:4695893/36‑1 (MQ=255)
   accttcagtaaaagtctggcctggattggcgggttt                                 <  1:1683437‑M1/4‑1 (MQ=255)
    ccttcagtaaaagtctggcctcgattggcggctttt                                <  1:4756890‑M1/5‑2 (MQ=255)
      atttTCCAAAAGAATGACTTTGTGCATAAgtttgtt                              <  1:3877314/36‑1 (MQ=255)
      atttTCCAAAAAAATGACTTTGTGCATAAgtttgtt                              <  1:2562715/36‑1 (MQ=255)
       ttttCCAAAAAAATGACTTTGTGCATAAgtttgttt                             >  1:1739540/1‑36 (MQ=255)
       ttttCCAAAAAAATGACTTTGTGCATAAgtttgttt                             >  1:5938791/1‑36 (MQ=255)
       ttttCCAAAAAAATGACTTTGTGCATAAgtttgttt                             <  1:5641362/36‑1 (MQ=255)
        tttCCAAAAAAATGACTTTGTGCATAAGtttgtttt                            >  1:4661597/1‑36 (MQ=255)
        tttCCAAAAAAATGACTTTGTGCATAAGtttgtttt                            <  1:1784/36‑1 (MQ=255)
          tCCAAAAAAATGACTTTGTGCATAAGtttgtttttt                          <  1:4438599/36‑1 (MQ=255)
          tCCAAAAAAATGACTTTGTGCATAAGtttgtttttt                          >  1:5445560/1‑36 (MQ=255)
            cAAAAAAATGACTTTGTGCATAAGtttgttttttgt                        <  1:2591626/36‑1 (MQ=255)
            cAAAAAAATGACTTTGTGCATAAGtttgttttttgt                        >  1:1817218/1‑36 (MQ=255)
            aaaagtctggcctcgattggcggGtttgttttttgt                        <  1:5650929‑M1/13‑1 (MQ=255)
             aaaaaaaTGACTTTGTGCATAAGtttgttttttgtt                       >  1:1757145/1‑36 (MQ=255)
               aaaaaTGACTTTGTGCATAAGTttgttttttgtttt                     >  1:4200820/1‑36 (MQ=255)
               aaaaaTGACTTTGTGCATAAGTttgttttttgtttt                     <  1:2851577/36‑1 (MQ=255)
               aaaaaTGACTTTGTGCATAAGTttgttttttgtttt                     <  1:5722879/36‑1 (MQ=255)
                aaaaTGACTTTGTACATAAGTTtgttttttgttttt                    >  1:3192988/1‑36 (MQ=255)
                  aaTGACTTTGTGCATAAGTTTGTTTTTTGTTTTTgg                  >  1:5409355/1‑36 (MQ=255)
                   aTGACTTTGTGCATAAGTTTGTTTTTTGTTTTTggg                 >  1:3607879/1‑36 (MQ=255)
                       cTTTGTGCATAAGTTTGTTTTTTGTTTTTGGGGGGc             >  1:7504653/1‑36 (MQ=255)
                         ttGTGCATAAGTTTGTTTTTTGTTTTTGGGGGGCCg           <  1:6428235/36‑1 (MQ=255)
                          tgtgCATAAGTTTGTTTTTTGTTTTTGGTGTGCCGa          >  1:5151341/1‑36 (MQ=37)
                            tgCATAAGTTTGTTTTTTGTTTTTGGGGGGCCGATa        <  1:4178486/36‑1 (MQ=255)
                              cATAAGTTTGTTTTTTGTTTTTGGGGGGCCGATAGt      <  1:560109/36‑1 (MQ=255)
                               aTAAGTTTGTTTTATGTTTTTGGGGTGCCGATAGtt     <  1:5981288/36‑1 (MQ=38)
                                  aGTTTGTTTTTTGTTTTTGGGGGGCCGATAGTTGCt  <  1:2422159/36‑1 (MQ=255)
                                  aGTTTGTTTTTTGTTTTTGGGGGGCCGATAGTTGCt  >  1:775792/1‑36 (MQ=255)
                                   |                                  
CAATTTATTTTCCAAAAAAATGACTTTGTGCATAAGTTTGTTTTTTGTTTTTGGGGGGCCGATAGTTGCT  >  REL606/1109586‑1109655

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG