Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,481,490 | T→A | 15.2% | L460I (TTA→ATA) | ydcR → | fused predicted DNA‑binding transcriptional regulator/predicted amino transferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,481,490 | 0 | T→A | 15.2% | 2.5 ‑3.5 ‑0.0 | 44 | 1378 | ydcR | fused predicted DNA‑binding transcriptional regulator/predicted amino transferase |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (19/17): total (27/17) | ||||||||||
Fisher's exact test strand distribution p-value = 3.10e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.64e-01 |
AGTGGGGAGAGCGTGAAGAACAGGCGGTAAAACAATTAGGCAAACTTATTCAAGAACGGCTGTAATAGCGT > REL606/1481455‑1481525
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aGTGGGGAGAGCGTGAAGAACAGGCGGTAAAACAAt < 1:7084006/36‑1 (MQ=255)
aGTGGGGAGAGCGTGAAGAACAGGCGGTAAAACAAt < 1:2010574/36‑1 (MQ=255)
aGTGGGGAGAGCGTGAAGAACAGGCGGGTAAAAAAt > 1:2006576/1‑36 (MQ=25)
gTGGGGAGAGCGTGAAGACCAGGCGGTAAAACAAtt < 1:5875668/36‑1 (MQ=255)
gTGGGGAGAGCGTGAAGAACAGGCGGTAAAACAAtt > 1:4539645/1‑36 (MQ=255)
tGGGGAGAGCGTGAAGAACAGGCGGTAAAACAATTa < 1:209974/36‑1 (MQ=255)
gggAGAGCGTGAAGAACAGGCGGTTAAACCATTaag > 1:3309344/1‑34 (MQ=25)
gggAGAGCGTGAAGAACAGGCGGTAAAACAATTAgg < 1:3438988/36‑1 (MQ=255)
ggAAAGCGTGAAGAACAGGCGGTAAAACAATTAGGc < 1:3057227/36‑1 (MQ=255)
agagCGTGAAGAACAGGCGGTAAAACAATTAGGCaa < 1:7040415/36‑1 (MQ=255)
agagCGTGAAGAACAGGCGGGTAAAAAAATAGGGaa > 1:6812636/1‑36 (MQ=12)
gagCGTGAAGAACAGGCGGTAAAACAATTAGGCaaa > 1:1107791/1‑36 (MQ=255)
gagCGTGAAGAACAGGCGGGAAAAAAATTAGGGaaa > 1:1512376/1‑36 (MQ=25)
agCGTGAAGAACAGGCGGTAAAACAATTAGGCAAAc < 1:6233869/36‑1 (MQ=255)
agCGTGAAGAACAGGCGGTAAAACAATTAGGCAAAc < 1:7443278/36‑1 (MQ=255)
gCGTGAAGAACAGGCGGTAAAACAATTAGGCAAACt < 1:4437960/36‑1 (MQ=255)
gCGTGAAGAACAGGCGGTAAAACAATTAGGCAAACt < 1:1517586/36‑1 (MQ=255)
cGTGAAGAACAGGCGGTAAAACAAATAGGCAAACtt > 1:5508568/1‑36 (MQ=255)
gTGAAGAACAGGCGGTAAAAAAAATGTGCAAACTTa > 1:3670897/1‑36 (MQ=19)
tGAAGAACAGGCGGTAAAACAATTAGGCAAACTTAt < 1:5364899/36‑1 (MQ=255)
tGAAGAACAGGCGGTAAAAAAATTATGCAAAATTaa > 1:639632/1‑35 (MQ=21)
tGAAGAACAGGCGGTAAAAAAATTAGGCAAACtttt > 1:1204670/1‑34 (MQ=37)
tGAAGAACAGGCGGTAAAAAAAATAGGCAAAATTAt > 1:7026021/1‑36 (MQ=25)
gaagaaCAGGCGGTAAAAAAAATAGGGAAAATTAtt > 1:3729303/1‑36 (MQ=16)
gaagaaCAGGCGGAAAAACAAGTATGCAAAATTAtt > 1:612886/1‑36 (MQ=16)
aagaaCAGGCGGCAAAAAAAATAAGCAAAAATATTc > 1:6815482/1‑36 (MQ=9)
aCAGGCGGTAAAAAAAATAAACAAAACTATTTaaaa > 1:1784452/1‑34 (MQ=0)
cAGGCGGTAAAACAATTAGGCAAACTTATTCAAGaa > 1:1218556/1‑36 (MQ=255)
ggCGGTAAAACAATTAGGCAAACTTATTCAAGAACg > 1:7502476/1‑36 (MQ=255)
gCGGTAAAACAATTAGGCAAACTTATTCAAGAACgg > 1:6319758/1‑36 (MQ=255)
cGGTAAAACAATTAGGCAAACTTATTCAAGAACGGc > 1:5413736/1‑36 (MQ=255)
cGGTAAAACAATTAGGCAAACTTATTCAAGAACGGc < 1:4711045/36‑1 (MQ=255)
ggTAAAACAATTAGGCAAACTTATTCAAGAACGGCt > 1:7921237/1‑36 (MQ=255)
ggTAAAACAATTAGGCAAACTTATTCAAGAACGGCt > 1:2714910/1‑36 (MQ=255)
ggTAAAACAATTAGGCAAACTTATTCAAGAACGGCt < 1:842629/36‑1 (MQ=255)
gTAAAACAATTAGGCAAACTTATTCAAGAACGGCTg > 1:5367560/1‑36 (MQ=255)
gTAAAACAATTAGGCAAACTTATTCAAGAACGGCTg < 1:4774269/36‑1 (MQ=255)
tAAAACAATTAGGCAAACTTATTCAAGAACGGCTGt < 1:7486842/36‑1 (MQ=255)
tAAAACAATTAGGCAAACTTATTCAAGAACGGCTGt > 1:3220948/1‑36 (MQ=255)
aaaaCAATTAGGCAAACTTATTCAAGAACGGCTGTa > 1:2945647/1‑36 (MQ=255)
aaCAATTAGGCAAACTTATTCAAGAACGGCTGTAAt < 1:982094/36‑1 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATaac > 1:7340084/1‑34 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc > 1:3631854/1‑36 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc > 1:3318260/1‑36 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc < 1:1699378/36‑1 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc > 1:7997982/1‑36 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc < 1:2043726/36‑1 (MQ=255)
aaTTAGGCAAACTTATTCAAGAACGGCTGTAATAGc > 1:2088094/1‑36 (MQ=255)
aaTTAGGAAAACTTATTCAAGAACGGCTGTAATAGc < 1:3836972/36‑1 (MQ=255)
ttAGGCAAACTTATTCAAGAACGGCTGTGATAGCGt > 1:5022677/1‑36 (MQ=255)
ttAGGCAAACTTATTCAAGAACGGCTGTAATAGCGt < 1:1402100/36‑1 (MQ=255)
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AGTGGGGAGAGCGTGAAGAACAGGCGGTAAAACAATTAGGCAAACTTATTCAAGAACGGCTGTAATAGCGT > REL606/1481455‑1481525
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|