New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 632818 =39 (0.760)7 (0.140) 4/60 NT 16.7% coding (17/297 nt) citD citrate lyase, acyl carrier (gamma) subunit
?REL606 1241885 = 31 (0.520)coding (337/1737 nt) ycgO potassium/proton antiporter

CACATCCCCAGACTCAAGGGTGCCTGCAACGGCGGGCTGGTTTATTTTCATTTTTCACCTGTTTCTCATG  >  REL606/632784‑632853
                                  |                                   
cacaTCCCCAGACTCAAGGGTGCCTGCAACGGCggg                                    <  1:7922423/36‑1 (MQ=255)
cacaTCCCCAGACTCAAGGGTGCCTGCAACGGCggg                                    >  1:200191/1‑36 (MQ=255)
atcacctctggtttaaccggcatgatggcggcgtgg                                    >  1:212481‑M1/35‑36 (MQ=255)
atcacctctggtttaaccggcatgatggcggcgtgg                                    >  1:4764480‑M1/35‑36 (MQ=255)
  cacctctggtttaaccggcatgatggcggcgtGGCt                                  >  1:5781260‑M1/33‑36 (MQ=255)
  cacctctggtttaaccggcatgatggcggcgtGGCt                                  >  1:4447655‑M1/33‑36 (MQ=255)
  caTCCCCAGACTCAAGGGTGCCTGCAACGGCggggt                                  >  1:4772669/1‑34 (MQ=255)
  caTCCCCAGACTCAAGGGTGCCTGCAACGGCGGGcg                                  >  1:2673914/1‑35 (MQ=255)
   acctctggtttaaccggcatgatggcggcgtGGCTg                                 <  1:5608804‑M1/5‑1 (MQ=255)
   aTCCCCAGACTCAAGGGTGCCTGCAACGGCGGGCTg                                 <  1:7560483/36‑1 (MQ=255)
    tCCCCAGACTCAAGGGTGCCTGCAACGGCGGGCTgg                                <  1:4187630/36‑1 (MQ=255)
    accccAGACTCGAGGGTGCCTGCAGCGGCGGGCTgg                                <  1:7473551/35‑1 (MQ=37)
     ctctggtttaaccggcatgatggcggcgtGGCTGGt                               <  1:1264106‑M1/7‑1 (MQ=255)
     ccccAGACTCAAGGGTGCCTGCAACGGCGGGCTGGt                               <  1:1061840/36‑1 (MQ=255)
     ccccAGACTCAAGGGTGCCTGCAACGGCGGGCTGGt                               <  1:449916/36‑1 (MQ=255)
      cccAGACTCAAGGGTGCCTGCAACGGCGGGCTGGtt                              <  1:6861847/36‑1 (MQ=255)
       ccAGACTCAAGGGTGCCTGCAACGGCGGGGTGGgtt                             >  1:3840334/1‑36 (MQ=37)
       ccAGACTCAAGGGTGCCTGCAACGGCGGGCTGGttt                             <  1:5296134/36‑1 (MQ=255)
       ccAGACTCAAGGGTGCCGGCAACGGCGGGCTGGttt                             <  1:2226299/36‑1 (MQ=255)
         ggtttaaccggcatgatggcggcgtGGCtggttatt                           <  1:1563016‑M1/11‑4 (MQ=255)
         aGACTCAAGGGTGCCTGCAACGGCGGGCTGGttttt                           >  1:6601102/1‑34 (MQ=255)
          gtttaaccggcatgatggcggcgtGGCTGTTTTAtt                          <  1:6889132‑M1/12‑1 (MQ=255)
          gtttaaccggcatgatggcggcgtGGCTGTTTTAtt                          <  1:3493249‑M1/12‑1 (MQ=255)
           tttaaccggcatgatggcggcgtGGCTGGTTTAttt                         <  1:5173318‑M1/13‑1 (MQ=255)
            ttaaccggcatgatggcggcgtGGCTGTTTTAtttt                        <  1:5831416‑M1/14‑1 (MQ=255)
            ttaaccggcatgatggcggcgtGGCTGGTTTAtttt                        <  1:3733130‑M1/14‑1 (MQ=255)
            cTCAAGGGTGCCTGCAACGGCGGGGCGGGTTTtttt                        >  1:5355749/1‑36 (MQ=16)
            cTCAAGGGTGCCTGCAACGGCGGGCTGGTTTAtttt                        <  1:4052273/36‑1 (MQ=255)
            cTCAAGGGGGCCTGCAACGGCGGGGTGGGTTTtttt                        >  1:5181804/1‑36 (MQ=19)
             tCAAGGGTGCCTGCAACGGCGGGCTGGTTTATTTTc                       >  1:6995055/1‑36 (MQ=255)
             tCAAGGGTGCCTGCAACGGCGGGCTGGTTTATTTTc                       <  1:1467217/36‑1 (MQ=255)
               aaGGGTGCCTGCAACGGCGGGCTGGTTTATTTTCAt                     <  1:1618373/36‑1 (MQ=255)
               aaGGGTGCCTGCAACGGCGGGCTGGGTTTTTTTTAt                     >  1:5963274/1‑36 (MQ=25)
               aaGGGTGCCTGCAACGGCGGGCTGGGTTTTTTTCAt                     >  1:6207894/1‑36 (MQ=37)
                aGGGTGCCTGCAACGGCGGGCTGGTTTATTTTTAtt                    >  1:6893525/1‑36 (MQ=255)
                 gggTGCCTTCAACGGCGGGCTGGTTTATTTTCAttt                   <  1:7502565/36‑1 (MQ=255)
                   gTGCCTGCAACGGCGGGCTGGTTTATTTTCAttttt                 <  1:7193236/36‑1 (MQ=255)
                    tGCCTGCAACGGCGGGCTGGTTTATTTTCATTTTTc                <  1:5641263/36‑1 (MQ=255)
                     gCCTGCTATGGCGGGCTGGTTTATTTTCATTTTTCa               <  1:4593226/36‑1 (MQ=37)
                      ccTGCAACGGCGGGCTGGTTTATTTTCATTTTTCAc              <  1:4719005/36‑1 (MQ=255)
                       cTGCAACGGCGGGCTGGTTTATTTTTATTTTTTAcc             >  1:797346/1‑36 (MQ=37)
                            aCGGCGGGCTGGTTTATTTTCATTTTTCACCTGttt        <  1:5204945/36‑1 (MQ=255)
                             cggcggGCTGGTTTATTTTCATTTTTCACCTGTTtc       <  1:6717201/36‑1 (MQ=255)
                             cggcggGCTGGTTTATTTTCATTTTTCACCTGTTtc       >  1:6350536/1‑36 (MQ=255)
                             cggcggGCTGGTTTATTTTCATTTTTCACCTGTTtc       <  1:6054523/36‑1 (MQ=255)
                             cggcggGCTGGTTTATTTTCATTTTTCACCTGTTtc       <  1:4138385/36‑1 (MQ=255)
                                cggGCTGGTTTATTTTCATTTTTCACCTGTTTCTCa    <  1:5472393/36‑1 (MQ=255)
                                 gggCTGGTTTATTTTCATTTTTCACCTGTTTCTCAt   >  1:7113000/1‑36 (MQ=255)
                                 gggCTGGTTTATTTTCATTTTTCACCTGTTTCTCAt   >  1:2859653/1‑36 (MQ=255)
                                 gggCTGGTTTATTTTCATTTTTCACCTGTTTCTCAt   >  1:1926249/1‑36 (MQ=255)
                                 gggCTGGTTTATTTTCATTTTTCACCTGTTTCTCAt   >  1:1460082/1‑36 (MQ=255)
                                  GGCTGGTTTATTTTCATTTTTCACCTGTTTCTCATg  >  1:877404‑M1/1‑36 (MQ=255)
                                  |                                   
CACATCCCCAGACTCAAGGGTGCCTGCAACGGCGGGCTGGTTTATTTTCATTTTTCACCTGTTTCTCATG  >  REL606/632784‑632853

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG