Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,273,680 | Δ1 bp | 11.4% | coding (17/552 nt) | yrbD ← | predicted ABC‑type organic solvent transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,273,680 | 0 | T→. | 11.4% | 13.5 ‑0.4 ‑0.4 | 44 | coding (17/552 nt) | yrbD | predicted ABC‑type organic solvent transporter |
Reads supporting (aligned to +/- strand): new base (1/4): ref base (14/25): total (15/29) | ||||||||||
Fisher's exact test strand distribution p-value = 6.47e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.20e-01 |
TGCTGCTAATAAAAAGATACCCACCCAAATTTCATTTTTTTTCGTTTGCATGAACTCAATTCCCAAACA > REL606/3273646‑3273714
|
tgctgcTAATAAAAAGATACCCACCCAAATTTCAtt < 1:7817936/36‑1 (MQ=255)
tgctgcTAATAAAAAGATACCCACCCAAATTTCAtt > 1:6679242/1‑36 (MQ=255)
tgctgcTAATAAAAAGATACCCACCCAAATTTCAtt > 1:2834918/1‑36 (MQ=255)
gctgctAATAAAAATATACCCACCCAAATTTCAttt > 1:1867114/1‑36 (MQ=255)
ctgctAATAAAAAGATACCCACCCAAATTTCAtttt > 1:5485177/1‑36 (MQ=255)
ctgctAATAAAAAGATACCCACCCAAATTTCAtttt > 1:4034919/1‑36 (MQ=255)
gctAATAAAAAGATACCCACCCAAATTTCAtttttt > 1:6761995/1‑36 (MQ=255)
ctAATAAAAAGATCCCCACCCAAATTTCAttttttt > 1:3190077/1‑36 (MQ=255)
taataaAAAGATACCCACCCAAATTTCAtttttttt < 1:5952253/36‑1 (MQ=255)
aataaAAAGATACCCACCCAAATTTCATTTTTTTTc < 1:1678291/36‑1 (MQ=255)
taaAAAGATACCCACCCAAATTTCATTTTTTTTCGt > 1:6872342/1‑36 (MQ=255)
taaAAAGATACCCACCCAAATTTCATTTTTTTTCGt > 1:4690053/1‑36 (MQ=255)
aaaaaGATACCCACCCAAATTTCATTTTTTTTCGtt < 1:3369137/36‑1 (MQ=255)
aaaaaGATACCCACCCAAATTTCATTTTTTTTCGtt > 1:4760402/1‑36 (MQ=255)
aaaaGATACCCACCCAAATTTCATTTTTTTTCGttt > 1:2956596/1‑36 (MQ=255)
aaaaGATACCCACCCAAATTTCATTTTTTTTCGttt > 1:5703096/1‑36 (MQ=255)
aaaGATACCCACCCAAATTTCATTTTTTTTCGTTTg > 1:3545851/1‑36 (MQ=255)
aaaGATACCCACCCAAATTTCATTTTTTTTCGTTTg < 1:389812/36‑1 (MQ=255)
aaaGATACCCACCCAAATTTCA.TTTTTTTCGTTTGc > 1:5535918/1‑36 (MQ=37)
gATACCCACCCAAATTTCATTTTTTTTCGTTTGCAt < 1:2268272/36‑1 (MQ=255)
gATACCCACCCAAATTTCATTTTTTTTCGTTTGCAt < 1:3465224/36‑1 (MQ=255)
gATACCCACCCAAATTTCATTTTTTTTCGTTTGCAt < 1:923356/36‑1 (MQ=255)
attcccacccaAATTTCATTTTTTTTCGTTTGCATg > 1:4762090/4‑36 (MQ=255)
aTACCCACCCAAATATCATTTTTTTTCGTTTGCAtt < 1:5840151/36‑2 (MQ=255)
gcccacccaAATCTCATTTTTTTTCTTTTGCATGaa > 1:8049493/2‑36 (MQ=37)
cccacccaAATTTCATTTTTTTTCGTTTGCATGAAc < 1:5554772/36‑1 (MQ=255)
ccacccaAATTTCATTTTTTTTCGTTTGCATGAACt > 1:216656/1‑36 (MQ=255)
ccacccaAATTTCATTTTTTTTCGTTTGCATGAACt < 1:6587057/36‑1 (MQ=255)
ccacccaAATTTCA.TTTTTTTCGTTTGCATGAACTc < 1:702419/36‑1 (MQ=37)
ccacccaAATTTCA.TTTTTTTCGTTTGCATGAACTc < 1:697749/36‑1 (MQ=37)
cacccaAATTTCATTTTTTTTCGTTTGCATGAACTc < 1:3082569/36‑1 (MQ=255)
cacccaAATTTCATTTTTTTTCGTTTGCATGAACTc < 1:857176/36‑1 (MQ=255)
cacccaAATTTCATTTTTTTTCGTTTGCATGAACTc < 1:7263281/36‑1 (MQ=255)
acccaAATTTCATTTTTTGTCGTGTGCTTGAAATCa > 1:6813319/1‑36 (MQ=16)
cccaAATTTCATTTTTTTTCGTTTGCATGAACTCaa > 1:2155203/1‑36 (MQ=255)
caAATTTCATTTTTTTTCGTTTGCATGAACTCAAtt < 1:659109/36‑1 (MQ=255)
caAATTTCATTTTTTTTCGTTTGCATGAACTCAAtt > 1:4637762/1‑36 (MQ=255)
aaaTTTCATTTTTTTTCGTTTTCATGAACTCAATTc > 1:7570526/1‑36 (MQ=255)
aaaTTTCATTTTTTTTCGTTTGCATGAACTCAATTc < 1:5452424/36‑1 (MQ=255)
aaaTTTCA.TTTTTTTCGTTTGCATGAACTCAATTcc < 1:7512251/36‑1 (MQ=38)
aaaTTTCA.TTTTTTTCGTTTGCATGAACTCAATTcc < 1:8254286/36‑1 (MQ=38)
aaTTTCATTTTTTTTCGTTTGCATGAACTCAATTcc < 1:3790371/36‑1 (MQ=255)
aTTTCATTTTTTTTCTTTTGCATGAACTCAATTccc > 1:7350727/1‑36 (MQ=255)
aTTTCATTTTTTTTCGTTTGCATGAACTCAATTccc < 1:8091714/36‑1 (MQ=255)
tttCATTTTTTTTCGTTTGCATGAACTCAATTCCCa < 1:1705184/36‑1 (MQ=255)
tttCATTTTTTTTCGTTTGCATGAACTCAATTCCCa < 1:7884694/36‑1 (MQ=255)
tttCATTTTTTTTCGTTTGCATAAACTCAATTCCCa < 1:4777128/36‑1 (MQ=255)
ttCATTTTTTTTCGTTTGCATGAACTCAATTCCCaa < 1:2738135/36‑1 (MQ=255)
cATTTTTTTTCTTTTGCATGAACTCAATTCCCAAAc < 1:2970113/36‑1 (MQ=255)
cATTTTTTTTCGTTTGCATGAACTCAATTCCCAAAc < 1:5459542/36‑1 (MQ=255)
cATTTTTTTTCCTTTCCATGAGCTCAATTCCCAAAc < 1:3624726/36‑1 (MQ=21)
aTTTTTTTTCGTTTGCATGAACTCAATTCCCAAACa < 1:7963755/36‑1 (MQ=255)
aTTTTTTTTCGTTTGCATGAACTCAATTCCCAAACa < 1:7386085/36‑1 (MQ=255)
|
TGCTGCTAATAAAAAGATACCCACCCAAATTTCATTTTTTTTCGTTTGCATGAACTCAATTCCCAAACA > REL606/3273646‑3273714
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 27 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|