Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,004,243 | A→G | 20.0% | intergenic (‑169/+433) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,004,243 | 0 | A→G | 20.0% | 8.5 ‑2.8 ‑0.1 | 25 | intergenic (‑169/+433) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (10/10): total (15/10) | ||||||||||
Fisher's exact test strand distribution p-value = 6.13e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.35e-01 |
CGTTTCGCTACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAA > REL606/1004210‑1004277
|
cGTTTCGCTACCGTGAAAGTGCTACaaagataaaga < 1:486710/36‑1 (MQ=255)
cGTTTCGCTACCGTGAAAGTGCTACaaagataaaga > 1:2681959/1‑36 (MQ=255)
gTTTCGCTACCGTGAAAGTGCTACaaagataaagat > 1:5012172/1‑36 (MQ=255)
ttCGCTACCGTGAAAGTGCTACAAAGATAAAGAttt > 1:6255556/1‑36 (MQ=255)
tCGCTACCGTGAAAGTGCTACAAAGATAAGGATTTg > 1:3788637/1‑36 (MQ=255)
cGCTACCGTGAAAGTGCTACAAAGATAAATATTTgg < 1:6044798/36‑1 (MQ=255)
cGCTACCGTGAAAGTGCTACAAAGATAAAGATTTgg < 1:4558630/36‑1 (MQ=255)
cTACCGTGAAAGTGCTACAAAGATAAAGATTTGGtt > 1:1730055/1‑36 (MQ=255)
cTACCGTGAAAGTGCTACAAAGATAAAGATTTGGtt > 1:2114169/1‑36 (MQ=255)
tACCGTGAAAGTGCTACAAAGATAAAGATTTGGttt > 1:5108582/1‑36 (MQ=255)
aCCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTc < 1:2157290/36‑1 (MQ=255)
ccGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCa < 1:3375348/36‑1 (MQ=255)
cGTGAAAGTGCTACAAAGATAAGGATTTGGTTTCaa > 1:1409035/1‑36 (MQ=255)
gTGAAAGTGCTACAAAGATAAAGATTTGGTTTCaaa < 1:331672/36‑1 (MQ=255)
tGAAAGTGCTACAAAGATAAAGATTTGGTTTCaaaa > 1:4589056/1‑36 (MQ=255)
aaGTGCTACAAAGATAAGGATTTGGTTTAAAAAAGa > 1:1740525/1‑36 (MQ=38)
aaGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGa < 1:3342824/36‑1 (MQ=255)
aaGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGa < 1:408890/36‑1 (MQ=255)
aaGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGa < 1:1551562/36‑1 (MQ=255)
gTGCTACAAAGATAAGGATTTGGTTTCAAAAAGaaa > 1:5259340/1‑36 (MQ=255)
tGCTACAAAGATAAAGATTTGGTTTCAAAAAGaaaa < 1:551300/36‑1 (MQ=255)
tGCTACAAAGATAAAGATTTGGTTTCAAAAAGaaaa > 1:7833442/1‑36 (MQ=255)
cTACAAAGATAAAGATTTGGTTTCAAAAAGAACAat > 1:1578025/1‑36 (MQ=255)
tACAAAGATAAAGATTTGGTTTCAAAAAGAAAAata < 1:5772449/36‑1 (MQ=255)
aCAAAGATAAGGATTTGGTTTCAAAAAGAAAAatat > 1:3984415/1‑36 (MQ=255)
aCAAAGATAAAGATTTGGTTTCAAAAAGAAAAatat > 1:7312425/1‑36 (MQ=255)
cAAAGATAAATATTTGGTTTCAAAAAGAAAAATATg > 1:6986158/1‑36 (MQ=255)
cAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATg > 1:1786214/1‑36 (MQ=255)
aaagataaagatTTGGTTTCAAAAAGAAAAATATGt > 1:4930873/1‑36 (MQ=255)
aaagataaagatTTGGTTTCAAAAAGAAAAATATGt > 1:4322973/1‑36 (MQ=255)
aaagataaagatCTGGTTTCAAAAAGAAAAATATGt > 1:1906397/1‑36 (MQ=255)
aagataaatatTTGGTTTCAAAAAGAAAAATATGTa > 1:4569971/1‑36 (MQ=255)
aagataaagatTTGGTTTCAAAAAGAAAAATATGTa > 1:1352987/1‑36 (MQ=255)
gataaatatTTGGTTTCAAAAAGAAAAATATGTAAc > 1:7113437/1‑36 (MQ=255)
gataaagatTTGGTTTCAAAAAGAAAAATATGTAAc > 1:600001/1‑36 (MQ=255)
gataaagatTTGGTTTCAAAAAGAAAAATATGTAAc < 1:5249686/36‑1 (MQ=255)
ataaagatTTGGTTTCAAAAAGAAAAATATGTAAcc < 1:4345153/36‑1 (MQ=255)
aaagatTTGGTTTCAAAAAGAAAAATATGTAACCaa > 1:4991841/1‑36 (MQ=255)
aagatTTGGTTTCAACAAGAAAAATATGTAACCaaa > 1:5794212/1‑36 (MQ=255)
aagatTTGGTTTCAAAAAGAAAAATATGTAACCaaa > 1:5719878/1‑36 (MQ=255)
aagatTTGGTTTCAAAAAGAAAAATATGTAACCaaa > 1:3328007/1‑36 (MQ=255)
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CGTTTCGCTACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAATATGTAACCAAA > REL606/1004210‑1004277
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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