Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,135,984 | A→G | 20.7% | S26P (TCC→CCC) | dinI ← | DNA damage‑inducible protein I |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,135,984 | 0 | A→G | 20.7% | 5.7 ‑3.6 ‑0.0 | 35 | 76 | dinI | DNA damage‑inducible protein I |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (13/14): total (21/14) | ||||||||||
Fisher's exact test strand distribution p-value = 2.62e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.85e-01 |
TTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCT > REL606/1135949‑1136018
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ttCATTATCAGGAAACGCATACTGAATACGGCGGGa > 1:1175388/1‑36 (MQ=255)
tCATTATCAGGAAACGCATACTGAATACGGCGGGaa > 1:1401210/1‑36 (MQ=255)
cATTATCAGGAAACGCATACTGAATACGGCGGGaaa < 1:1717564/36‑1 (MQ=255)
aTTATCAGGAAACGCATACTGAATACGGCGGGgaaa > 1:6227710/1‑35 (MQ=255)
ttATCAGGAAACGCATACTGAATACGGCGGGAAAGt < 1:739229/36‑1 (MQ=255)
tATCAGGAAACGCATACTGAATACGGCGGGGAAAtt > 1:5504267/1‑36 (MQ=37)
aTCAGGAAACGCATACTGAATACGGCGGGGAAGttt > 1:746054/1‑35 (MQ=255)
aTCAGGAAACGCATACTGAATACGGCGGGGAAGttt > 1:818439/1‑35 (MQ=255)
aTCAGGAAACGCATAATGAATACGGCGGGTAAGtta > 1:5839991/1‑35 (MQ=37)
cAGGAAACGCATACTGAATACGGCGGGAAAGTTCgc < 1:6558285/36‑1 (MQ=255)
cAGGAAACGCATACTGAATACGGCGGGAAAGTTCgc < 1:6390264/36‑1 (MQ=255)
aGGAAACGCATACTGAATACGGCGGGGAAGGTCgcc > 1:7890142/1‑36 (MQ=38)
aGGAAACGCATACTGAATACGGCGGGAAAGTTCgcc < 1:5322617/36‑1 (MQ=255)
ggAAACGCATACTGAATACGGCGGGAAAGTTCgcca < 1:7857406/36‑1 (MQ=255)
aaCGCATACTGAATACGGCGGTAAAGTTCgccagcc < 1:2403744/36‑1 (MQ=255)
aCGCATACTGAATACGGCGGGAAAGTTCgccagcca < 1:4016135/36‑1 (MQ=255)
gCATACTGAATACGGCGGGAAAGTTCGCCAGCCAgg < 1:339441/36‑1 (MQ=255)
cATACTGAATACGGCGGGGAAGATTGCCAACCAagg > 1:1109800/1‑36 (MQ=16)
cATACTGAATACGGCGGGGAAATTTTTCCGCCAggg > 1:7638710/1‑36 (MQ=9)
cATACGGAATACGGCGGGAAAGTTCGCCAGCCAggg < 1:345294/36‑1 (MQ=255)
tACTGAATACGGCGGGGAAGATTGCCAGCCAggggg > 1:1561642/1‑34 (MQ=21)
tACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCg < 1:4683122/36‑1 (MQ=255)
tACTGAATACGGCGGGAAAAATTGGCAGGCAggggg > 1:3344772/1‑34 (MQ=12)
aCTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGt < 1:7361797/36‑1 (MQ=255)
tGAACAAGGCGGTAAAGTTCGCCAGCCAGGGCGTCa < 1:7612195/36‑1 (MQ=25)
aTACGGCGGGAAAGTTCGCCCGCCCGGGCGGCCATa > 1:2471207/1‑36 (MQ=16)
aCGACGGCAAAGTCCGCCAGCCAGGGCGTCAATAGc < 1:4399044/36‑1 (MQ=25)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:843131/1‑36 (MQ=255)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:1299501/1‑36 (MQ=255)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:7209655/1‑36 (MQ=255)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:3022678/1‑36 (MQ=255)
ggcggGAAAGTTCGCCAGCCAGGGCGTCAATAGccc > 1:5564216/1‑36 (MQ=255)
gcggGAAAGTTCGCCAGCCAGGGCGTCACTAGcccc > 1:2865002/1‑36 (MQ=255)
cggGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCa < 1:800455/36‑1 (MQ=255)
gggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAg > 1:5221748/1‑36 (MQ=255)
ggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGc > 1:1600116/1‑36 (MQ=255)
ggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGc > 1:5963191/1‑36 (MQ=255)
ggAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGc > 1:5304248/1‑36 (MQ=255)
gAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCt > 1:5631506/1‑36 (MQ=255)
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TTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCT > REL606/1135949‑1136018
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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