New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 553366 =8 (0.160)13 (0.250) 6/60 NT 50.0% coding (1526/2817 nt) ECB_00512 putative tail component of prophage
?REL606 4169224 = 18 (0.300)intergenic (+40/‑173) rpoC/htrC DNA‑directed RNA polymerase subunit beta'/heat shock protein

TGTACCGTCGGATCATAAACCGCAAGATGCGGCGTGGCGG...................................  <  REL606/553405‑553366
...................................GGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATT  >  REL606/4169224‑4169258
                                                                           
      GTCGGGTCATAAACCGCAAGATGCGGCGTGGCGGGg                                   >  1:686839/1‑35 (MQ=0)
      GTCGGATCATAAACCGCAAGATGCGGCGTGGCGGGT                                   >  1:4387317/1‑36 (MQ=1)
       TCGGATCATAAACCGCAAGATGCGGCGTGGCGGGgc                                  >  1:2730510/1‑34 (MQ=1)
       TCGGATCATAAACCGCAAGATGCGGCGTGGCGGGTT                                  >  1:1181699/1‑36 (MQ=1)
        CGGATCATAAACCGCAAGATGCGGCGTGGCGGGTTT                                 >  1:5837054/1‑36 (MQ=1)
        CGGATCATAAACCGCAAGATGCGGCGTGGCGGGTTT                                 >  1:6168679/1‑36 (MQ=1)
          GATCATAAACCGCAAGATGCGGCGTGGCGGGTTTct                               >  1:695112/1‑34 (MQ=1)
          GATCATAAACCGCAAGATGCGGCGTGGCGGGTTTTT                               >  1:380547/1‑36 (MQ=1)
          GATCATAAACCGCAAGATGCGGCGTGGCGGGTTTTT                               >  1:5397397/1‑36 (MQ=1)
          GATCATAAACCGCAAGATGCGGCGTGGCGGGTTTTT                               >  1:5480154/1‑36 (MQ=1)
            TCATAAACCGCAAGATGCGGCGTGGCGGGTTTTTTT                             >  1:6241526/1‑36 (MQ=1)
             CATAAACCGCAAGATGCGGCGTGGCGGTTTTTTTTA                            >  1:1259593/1‑36 (MQ=0)
             CATAAACCGCAAGATGCGGCGTGGCGGGTTTTTTTA                            >  1:1411725/1‑36 (MQ=1)
                                                                           
TGTACCGTCGGATCATAAACCGCAAGATGCGGCGTGGCGG...................................  <  REL606/553405‑553366
...................................GGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATT  >  REL606/4169224‑4169258

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG