Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,524,522 IS186 (+) +6 bp 61.1% coding (494‑499/549 nt) fimA → major type 1 subunit fimbrin (pilin)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 15386 =NA (NA)16 (0.290) 14/64 NT 50.0% noncoding (1/1343 nt) IS186 repeat region
?REL606 = 4524527 16 (0.260)coding (499/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? REL606 = 16728NA (NA)28 (0.500) 20/64 NT 70.0% noncoding (1343/1343 nt) IS186 repeat region
?REL606 4524522 = 12 (0.200)coding (494/549 nt) fimA major type 1 subunit fimbrin (pilin)

GTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAG  >  REL606/4524493‑4524562
                                  |                                   
gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc                                    <  1:3284932‑M2/36‑2 (MQ=255)
gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc                                    <  1:1535038‑M2/36‑2 (MQ=255)
gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc                                    <  1:3848795‑M2/36‑2 (MQ=255)
  ttcaacccttaagttagcgcttatgggCCGCAAccc                                  <  1:3294312‑M2/9‑1 (MQ=255)
   ttaacccttaagttagcgcttatgggCCGCAAcccc                                 >  1:6835638‑M2/27‑36 (MQ=255)
   tcaacccttaagttagcgcttatgggCCGCAAcccc                                 <  1:1223911‑M2/10‑1 (MQ=255)
   tcaacccttaagttagcgcttatgggCCGCAAcccc                                 <  1:490759‑M2/10‑1 (MQ=255)
    caacccttaagttagcgcttatgggCCGCAACCCCg                                <  1:7235455‑M2/11‑1 (MQ=255)
    cAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccat                                <  1:2359398‑M2/36‑6 (MQ=255)
     aacccttaagttagcgcttatgggCCGCAACCCCgg                               >  1:3652032‑M2/25‑36 (MQ=255)
     aacccttaagttagcgcttatgggCCGCAACCCCgg                               >  1:2776955‑M2/25‑36 (MQ=255)
      acccttaagttagcgcttatgggCCGCAACCCCggg                              <  1:3000885‑M2/13‑1 (MQ=255)
      acccttaagttagcgcttatgggCCGCAACCCCggg                              <  1:5619271‑M2/13‑1 (MQ=255)
       gcgcGTTATTTTGCAACCGGGGCCGCAAcccataag                             <  1:4529168‑M2/36‑9 (MQ=255)
       cccttaagttagcgcttatgggCCGCAACCCCGGGt                             <  1:4500986‑M2/14‑1 (MQ=255)
          cgTTATTTTGCAACCGGGGCCGCAAcccataagcgc                          >  1:1004166‑M2/1‑25 (MQ=255)
           taagttagcgcttatgggCCGCAACCCCGGGtgctg                         <  1:4457500‑M2/18‑1 (MQ=255)
           taagttagcgcttatgggCCGCAACCCCGGGtgctg                         >  1:1650628‑M2/19‑36 (MQ=255)
           taagttagcgcttatgggCCGCAACCCCGGGtgctg                         >  1:3288968‑M2/19‑36 (MQ=255)
            ttATTTTGCAACCGGGGCCGCAACCCCGGGtgctgc                        >  1:275870/1‑36 (MQ=255)
             tATTTTGCAACCGGGGCCGCAACCCCGGGTgctgct                       <  1:383289/36‑1 (MQ=255)
             agttagcgcttatgggCCGCAACCCCGGGTgctgct                       <  1:750232‑M2/20‑1 (MQ=255)
              aTTTTGCAACCGGGGCCGCAAcccataagcgctaac                      >  1:5267936‑M2/1‑21 (MQ=255)
              aTTTTGCAACCGGGGCCGCAAcccataagcgctaac                      <  1:1277342‑M2/36‑16 (MQ=255)
               ttttGCAACCGGGGCCGCAAcccataagcgctaact                     >  1:3026884‑M2/1‑20 (MQ=255)
               ttttGCAACCGGGGCCGCAACCCCGGGNNCTGCTaa                     >  1:7237176/1‑36 (MQ=255)
                tttGCAACCGGGGCCGCAAcccataagcgctaactt                    >  1:233194‑M2/1‑19 (MQ=255)
                tttGCAACCGGGGCCGCAAcccataagcgctaactt                    >  1:7105572‑M2/1‑19 (MQ=255)
                tagcgcttatgggCCGCAACCCCGGTTGCTGCTAAt                    <  1:153577‑M2/23‑1 (MQ=255)
                tagcgcttatgggCCGCAACCCCGGGTGCTGCTAAt                    <  1:6135238‑M2/23‑1 (MQ=255)
                 ttGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATg                   <  1:3646407/36‑1 (MQ=255)
                 agcgcttatgggCCGCAACCCCGGGTGCTGCTAATg                   <  1:1802188‑M2/24‑1 (MQ=255)
                    cAACCGGGGCCGCAAcccataagcgctaacttaagg                >  1:650778‑M2/1‑15 (MQ=255)
                     cttatgggCCGCAACCCCGGGTGCTGCTAATGCGGa               <  1:7318405‑M2/28‑1 (MQ=255)
                     aaCCGGGGCCGCAAcccataagcgctaacttaaggg               <  1:5732424‑M2/36‑23 (MQ=255)
                     aaCCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGa               >  1:7045446/1‑36 (MQ=255)
                      ttatgggCCGCAACCCCGGGTGCTGCTAATGCGGAt              <  1:1986219‑M2/29‑1 (MQ=255)
                       tatgggCCGCAACCCCGGGTGCTGCTAATGCGGATg             <  1:5794824‑M2/30‑1 (MQ=255)
                       ccGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg             <  1:5291096/36‑1 (MQ=255)
                       ccGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATg             >  1:4395226/1‑36 (MQ=255)
                        cGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGc            <  1:1615924/36‑1 (MQ=255)
                         tgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCg           <  1:7084599‑M2/32‑1 (MQ=255)
                         ggggCCGCAAcccataagcgctaacttaagggttgt           <  1:5018394‑M2/36‑27 (MQ=255)
                         ggggCCGCAACCCCGGGTGCTGCTAATGCGGATGCg           >  1:3120911/1‑36 (MQ=255)
                         ggggCCGCAACCCCGGGTGCTGCTAATGCGGATGCg           <  1:3404155/36‑1 (MQ=255)
                          gggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGa          >  1:4732735‑M2/4‑36 (MQ=255)
                          gggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGa          >  1:4945899‑M2/4‑36 (MQ=255)
                           ggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAc         >  1:1464678‑M2/3‑36 (MQ=255)
                           ggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAc         >  1:3569619‑M2/3‑36 (MQ=255)
                               gCAAcccataagcgctaacttaagggttgtggtatt     <  1:5168277‑M2/36‑33 (MQ=255)
                               gCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTc     >  1:7754318/1‑36 (MQ=255)
                               gCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTc     >  1:701210/1‑36 (MQ=255)
                                cAAcccataagcgctaacttaagggttgtggtatta    >  1:2905070‑M2/1‑3 (MQ=255)
                                cAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCa    <  1:3966014/36‑1 (MQ=255)
                                 aacccataagcgctaacttaagggttgtggtattac   <  1:7551936‑M2/36‑35 (MQ=255)
                                 aaCCCCGGGTGCTGCTAATGCGGATGCGACCTTCaa   >  1:3179361/1‑36 (MQ=255)
                                  acccataagcgctaacttaagggttgtggtattacg  <  1:1040859‑M2/36‑36 (MQ=255)
                                  acccataagcgctaacttaagggatgtggtattacg  <  1:3574979‑M2/36‑36 (MQ=255)
                                  aCCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg  >  1:5724781/1‑36 (MQ=255)
                                  aCCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg  <  1:4800457/36‑1 (MQ=255)
                                  |                                   
GTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAG  >  REL606/4524493‑4524562

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG