New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 70144739 (1.050)8 (0.220) 4/58 NT 19.3% coding (1109/2199 nt) speF ornithine decarboxylase isozyme, inducible
?REL606 3424883 = 28 (0.620)intergenic (+101/‑25) nirD/nirC nitrite reductase small subunit/nitrite transporter

ACATAACGCTGTTGCCCTTTGATGTGGCTGT.....................  >  REL606/701417‑701447
.....................................TTTTTATTTTTTAAA  >  REL606/3424883‑3424897
                               ||||||               
ACATAACGCTGTTGCCCTTTGATGTGGCTGTGTTTT                  >  1:216878/1‑36 (MQ=0)
 CATAACGCTGTTGCCCTTTGATGTGGCTGGTTTTTT                 >  1:948223/1‑36 (MQ=0)
  ATAACGCTGTTGCCCTTTGATGTGGCTGTTTTTTTT                >  1:1529536/1‑36 (MQ=1)
  ATAACGCTGTTGCCCTTTGATGTGGCTGTTTTTTTT                >  1:5566605/1‑36 (MQ=1)
  ATAACGCTGTTGCCCTTTGATGTGGCTGTGTTTTTT                >  1:731478/1‑36 (MQ=0)
     ACGCTGTTGCCCTTTGATGTGGCTGTTTTTTTTTTT             >  1:1328821/1‑36 (MQ=1)
     ACGCTGTTGCCCTTTGATGTGGCTGTCTTTTTTTTT             >  1:642320/1‑36 (MQ=38)
           TTGCCCTTTGATGTGGCTGTTTTTTTTTTTTATTTT       >  1:4850735/1‑36 (MQ=1)
            TGCCCTTTGATGTGGCTGTTTTTTTTTTTTATTTTT      >  1:5303689/1‑36 (MQ=1)
                CTTTGATGTGGCTGTCTTTTTTTTTTATTTTTTAAg  >  1:4334951/1‑35 (MQ=40)
                               ||||||               
ACATAACGCTGTTGCCCTTTGATGTGGCTGT.....................  >  REL606/701417‑701447
.....................................TTTTTATTTTTTAAA  >  REL606/3424883‑3424897

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 17 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG