Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,267,833 | T→G | 5.4% | L364W (TTG→TGG) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,267,833 | 0 | T→G | 5.4% | 2.4 0.0 0.0 | 55 | 1091 | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
Reads supporting (aligned to +/- strand): new base (1/2): ref base (18/34): total (19/36) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATTCATAACACGCACGGTGAAATGATAGGTGCTTTGGTGATTTTCTCTGATTTAACTGCCCGCAAAGAA > REL606/2267799‑2267867
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aTTCATAACACGCACGGTGAAATGATAGGTGCTTTg > 1:4735254/1‑36 (MQ=255)
ttCATAACACGCACGGTGAAATGATAGGTGCTTTgg < 1:5713337/36‑1 (MQ=255)
ttCATAACACGCACGGTGAAATGATAGGTGCTTTgg < 1:4973567/36‑1 (MQ=255)
tCATAACACGCACGGTGAAATGATAGGTGCTTTGGt > 1:858821/1‑36 (MQ=255)
tCATAACACGCACGGTGAAATGATAGGTGCTTTGGt < 1:7412356/36‑1 (MQ=255)
tCATAACACGCACGGTGAAATGATAGGTGCTTTGGt < 1:4330733/36‑1 (MQ=255)
tCATAACACGCACGGTGAAATGATAGGTGCTTTGGt < 1:2858704/36‑1 (MQ=255)
cATAACACGCACGGTGAAATGATAGGTGCTTGGGTg < 1:4303012/36‑1 (MQ=255)
aTAACACGCACGGTGAAATGATAGGTGCTTTGGTGa < 1:4540565/36‑1 (MQ=255)
tAACACGCACGGTGAAATGATAGGTGCTTTGGTGAt < 1:736134/36‑1 (MQ=255)
tAACACGCACGGTGAAATGATAGGTGCTTTGGTGAt > 1:3961606/1‑36 (MQ=255)
aaCACGCACGGTGAAATGATAGGTGCTTTGGTGAtt > 1:7869906/1‑36 (MQ=255)
aaCACGCACGGTGAAATGATAGGTGCTTTGGTGAtt < 1:7631060/36‑1 (MQ=255)
aaCACGCACGGTGAAATGATAGGTGCTTTGGTGAtt < 1:3175127/36‑1 (MQ=255)
acacGCACGGTGAAATGATAGGTGCTTTGGTGAttt > 1:6457385/1‑36 (MQ=255)
acacGCACGGTGAAATGATAGGTGCTTTGGTGAttt < 1:1666861/36‑1 (MQ=255)
acacGCACGGTGAAATGATAGGTGCTTTGGTGAttt > 1:4416885/1‑36 (MQ=255)
acacGCACGGTGAAATGATAGGTGCTTTGGTGAttt < 1:1505038/36‑1 (MQ=255)
acacGCACGGTGAAATGATAGGTGCTTTGGTGAttt > 1:1199049/1‑36 (MQ=255)
acgcacgGTGAAATGATAGGTGCTTTGGTGATTTtc < 1:5342102/36‑1 (MQ=255)
acgcacgGTGAAATGATAGGTGCTTTGGTGATTTtc < 1:166558/36‑1 (MQ=255)
acgcacgGTGAAATGATAGGTGCTTTGGTGATTTtc > 1:686023/1‑36 (MQ=255)
acgcacgGTGAAATGATAGGTGCTTTGGTGATTTtc < 1:7109877/36‑1 (MQ=255)
cgcacgGTGAAATGATAGGTGCTTTGGTGATTTtct < 1:2705795/36‑1 (MQ=255)
cgcacgGTGAAATGATAGGTGCTTTGGTGATTTtct < 1:7257945/36‑1 (MQ=255)
gcacgGTGAAATGATAGGGGCTTTGGTGATTTtctc > 1:3859220/1‑36 (MQ=255)
gcacgGGGAAATGATAGGTGCTTTGGTGATTTtctc > 1:2168289/1‑36 (MQ=255)
cacgGTGAAATGATAGGTGCTTTGGTGATTTTctct < 1:3834888/36‑1 (MQ=255)
cacgGTGAAATGATAGGTGCTTTGGTGATTTTctct < 1:6727128/36‑1 (MQ=255)
cacgGTGAAATGATAGGTGCTTTGGTGATTTTctct < 1:1664733/36‑1 (MQ=255)
cacgGTGAAATGATAGGTGCTTTGGTGATTTTctct < 1:4161543/36‑1 (MQ=255)
acgGTGAAATGATAGGTGCTTTGGTGATTTTCTCTg < 1:3321337/36‑1 (MQ=255)
cgGTGAAATGATAGGTGCTTTGGTGATTTTCTCTGa < 1:7609643/36‑1 (MQ=255)
ggTGAAATGATAGGTGCTTTGGTGATTTTCTCTGAt > 1:3192241/1‑36 (MQ=255)
ggTGAAATGATAGGTGCTTTGGTGATTTTCTCTGAt < 1:4987018/36‑1 (MQ=255)
gTGAAATGATAGGTGCTTTGGTGATTTTCTCTGAtt < 1:743910/36‑1 (MQ=255)
tGAAATGATAGGTGCTTTGGTGATTTTCTCTGAttt < 1:4833869/36‑1 (MQ=255)
tGAAATGATAGGTGCTTTGGTGATTTTCTCTGAttt < 1:6938265/36‑1 (MQ=255)
gAAATGATAGGTGCTTTGGTGATTTTCTCTGATTTa < 1:3377359/36‑1 (MQ=255)
aaTGATAGGTGCTTTGGTGATTTTCTCTGATTTAAc < 1:4181684/36‑1 (MQ=255)
aTGATAGGTGCTTTGGTGATTTTCTCTGATTTAACt > 1:4583893/1‑36 (MQ=255)
aTGATAGGTGCTTTGGTGATTTTCTCTGATTTAACt < 1:2783723/36‑1 (MQ=255)
aTGATAGGTGCTTTGGTGATTTTCTCTGATTTAACt > 1:3912977/1‑36 (MQ=255)
aTGATAGGTGCTTTGGTGATTTTCTCTGATTTAACt > 1:366368/1‑36 (MQ=255)
tGATAGGTGCTTTGGTGATTTTCTCTGATTTAACTg < 1:4550805/36‑1 (MQ=255)
tGATAGGTGCTTTGGTGATTTTCTCTGATTTAACTg > 1:3952082/1‑36 (MQ=255)
tAGGTGCTTTGGTGATTTTCTCTGATTTAACTTccc > 1:3958320/1‑36 (MQ=255)
tAGGTGCTTTGGTGATTTTCTCTGATTTAACTGccc < 1:6884331/36‑1 (MQ=255)
tAGGTGCTTTGGTGATTTTCTCTGATTTAACTGccc < 1:4347497/36‑1 (MQ=255)
aGGTGCTTTGGTGATTTTCTCTGATTTAACTGCCCg < 1:5541875/36‑1 (MQ=255)
aGGTGCTTTGGTGATTTTCTCTGATTTAACTGCCCg < 1:1709583/36‑1 (MQ=255)
ggTGCTTTGGTGATTTTCTCTGATTTAACTGCCCGc > 1:3487676/1‑36 (MQ=255)
ggTGCTTGGGTGATTTTCTCTGATTTAACTGCCCGc > 1:6166338/1‑36 (MQ=255)
ggTGCTTGGGTGATTTTCTCTGATTTAACTGCCCGc < 1:2646692/36‑1 (MQ=255)
tGCTTTGGTGATTTTCTCTGATTTAACTGCCCGCaa > 1:5204735/1‑36 (MQ=255)
ttGGTGATTTTCTCTGATTTAACTGCCCGCAAAGaa > 1:2446606/1‑36 (MQ=255)
ttGGTGATTTTCTCTGATTTAACTGCCCGCAAAGaa < 1:2427932/36‑1 (MQ=255)
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ATTCATAACACGCACGGTGAAATGATAGGTGCTTTGGTGATTTTCTCTGATTTAACTGCCCGCAAAGAA > REL606/2267799‑2267867
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 21 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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