Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 196,322 | C→G | 25.3% | intergenic (+51/‑41) | frr → / → ispC | ribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 196,322 | 0 | C→G | 25.3% | 3.6 ‑3.1 0.0 | 22 | intergenic (+51/‑41) | frr/ispC | ribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (7/9): total (13/9) | ||||||||||
Fisher's exact test strand distribution p-value = 4.61e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAT > REL606/196287‑196357
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aaaCGCCGCTCAGTAGATCCTTGCGGATCGGCTggc < 1:2170488/36‑1 (MQ=255)
aaaCGCCGCTCAGTAGATCCTTGCGGATCGGCTggc < 1:6493618/36‑1 (MQ=255)
accccgcTCATTATATCCTTGCTGATCGGCTggcgg < 1:6202344/33‑1 (MQ=19)
aCGCCGCTCAGTAGATCCTTGCGGATCGGCTggcgg < 1:631201/36‑1 (MQ=255)
gccgcTCAGTAGATCCTTGCGGATCGGCTGgcgg.cg < 1:2498959/36‑1 (MQ=255)
ccgcTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGt < 1:1754044/36‑1 (MQ=255)
cTCAGTAGATCCCTGCGGATCGGCTGGGGG.AGgttt > 1:1218799/1‑36 (MQ=19)
tCAGTAGATCCTTGCGGATCGGCTGGGGG.GGttttt > 1:6623042/1‑35 (MQ=37)
tCAGTAGATCCTTGCGGATCGGCTGGCGGCCGtttt > 1:4276099/1‑36 (MQ=37)
cAGTAGATCCTTGCGGATCGGCTGGGGG.CGtttttt > 1:397391/1‑34 (MQ=38)
cAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGc < 1:7671923/36‑1 (MQ=255)
aGTAGATCCGTGCGGATCGGCTGGCGG.CGTTTTGCt < 1:8164319/36‑1 (MQ=255)
gTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCtt < 1:1578413/36‑1 (MQ=255)
aGATCCTTGCGGATCGGCTGGGGG.GGTTTTTTtttt > 1:90844/1‑36 (MQ=19)
gATCCTTGCGGATCGGCTGGGGG.GGTTTTTTttttt > 1:1447723/1‑36 (MQ=19)
tCCTTGCGGATCGGATGGGGG.CGTTTTTCttttttt > 1:2594526/1‑34 (MQ=18)
ccTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTAtt < 1:3634582/36‑1 (MQ=255)
ttGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCt < 1:6391510/36‑1 (MQ=255)
gCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGt < 1:6736209/36‑1 (MQ=255)
gCGGATCGGCTGGCGG.CGGTTTTCTTTTTATTTTGt > 1:5278966/1‑36 (MQ=21)
ctggATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGt < 1:5100947/34‑1 (MQ=255)
gATCGGCTGGCGG.GGTTTTGTTTTTTTTTCTTtctc > 1:5387037/1‑36 (MQ=16)
tCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCaa > 1:7778761/1‑36 (MQ=255)
gCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAActc > 1:1263156/1‑36 (MQ=255)
gCTGGCGG.CGCTTTGTGTTTTGTTTTTTCTCACctt > 1:3623987/1‑35 (MQ=0)
cTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAActct > 1:647553/1‑36 (MQ=255)
tGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTg < 1:2826231/36‑1 (MQ=255)
gcgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGa < 1:1988044/36‑1 (MQ=255)
gcgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGa < 1:1642247/36‑1 (MQ=255)
cgg.cgTTTTGCTTTTTATTCTGTCTCAACTCTGGAt < 1:4760999/36‑1 (MQ=255)
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AAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG.CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAT > REL606/196287‑196357
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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