Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 66,611 | 0 | G→T | 14.3% | 3.1 ‑20.6 0.0 | 80 | 1974 | polB | DNA polymerase II |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (17/0): ref base (13/50): total (30/50) | ||||||||||
Fisher's exact test strand distribution p-value = 1.18e-09 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATGGTTTCGCGTACATATTCCTGATATGGCTCGTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAACT > REL606/66576‑66645
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aTGGTTTCGCGTACATATTCCTGATATGGCTCGTTg < 1:5337129/36‑1 (MQ=255)
aTGGTTTCGCGTACATATTCCTGATATGGCTCGTTg > 1:2396183/1‑36 (MQ=255)
tGGTTTCGCGTACATATTCCTGATATGGCTCGTTGc < 1:3353013/36‑1 (MQ=255)
ggTTTCGCGTACATATTCCTGATATGGCTCGTTTCg > 1:7119053/1‑36 (MQ=255)
gTTTCGCGTACATATTCCTGATATGGCTCGTTTCgg > 1:6295490/1‑36 (MQ=255)
tttCGCGTACATATTCCTGATATGGCTCGTTGCGGa < 1:5682333/36‑1 (MQ=255)
tttCGCGTACATATTCCTGATATGGCTCCTTTCggg > 1:2894382/1‑35 (MQ=37)
ttCGCGTACATATTCCTGATATGGCTCGTTTCggta > 1:2627160/1‑34 (MQ=38)
ttCGCGTACATATTCCTGATATGGCTCGTTGCGGaa < 1:6826930/36‑1 (MQ=255)
ttCGCGTACATATTCCTGATATGGCTCGTTGCGGaa < 1:2605224/36‑1 (MQ=255)
gcgTACATATTCCTTATATGGCTCGTTGCGGAAGAt < 1:6937716/36‑1 (MQ=255)
gcgTACATATTCCTGATATGGCTCGTTTCGGAAGAt > 1:986880/1‑36 (MQ=255)
gcgTACATATTCCTGATATGGCTCGTTGCGGAAGAt < 1:4861465/36‑1 (MQ=255)
gcgTACATATTCCTGATATGGCTCGTTGCGGAAGAt < 1:6452768/36‑1 (MQ=255)
gcgTACATATTCCTGATATGGCTCGTTGCGGAAGAt < 1:7104856/36‑1 (MQ=255)
gcgTACATATTCCTGATATGGCTCGTTGCGGAAGAt > 1:5481938/1‑36 (MQ=255)
gcatACATATTCCTGATATGGCTAGTTGCGGAAGAt < 1:7262210/33‑1 (MQ=38)
cgTACATATTCCTGATATGGCTCGTTGCGGAAGATg < 1:6581383/36‑1 (MQ=255)
cgTACATATTCCTGATATGGCTCGTTGCGGAAGATg < 1:5343191/36‑1 (MQ=255)
gTACATATTCCTGATATGGCTCGTTGCGGAAGATgc < 1:4071355/36‑1 (MQ=255)
gTACATATTCCTGATATGGCTACTTTAGGGAGATgc > 1:5403081/1‑36 (MQ=16)
tACATATTCCTGATATGGCTCGTTTCGGAAGAttgg > 1:4742404/1‑33 (MQ=37)
tACATATTCCTGATATGGCTCGTTTCGGAAGATgcg > 1:2815411/1‑36 (MQ=255)
tACATATTCCTGATATGGCTCGTTGCGGAAGATgcg < 1:4772442/36‑1 (MQ=255)
cATATTCCTGATATGGCTCGTTTCGGTAGATTCGCa > 1:872977/1‑36 (MQ=25)
cATATTCCTGATATGGCTCGTTTCGGGAGATTCGCa > 1:56316/1‑36 (MQ=37)
cATATTCCTGATATGGCTCGTTGCGGAAGATGCGCa < 1:5581238/36‑1 (MQ=255)
cATATTCCTGATATGGCTCGTTGCGGAAGATGCGCa < 1:4923695/36‑1 (MQ=255)
cATATTCCTGATATGGCTCGTTGCGGAAGATGCGCa < 1:2739038/36‑1 (MQ=255)
atatTCCTGATATGGCTCGTTGCGGAAGATGCGCAg < 1:2372697/36‑1 (MQ=255)
tatTCCTGATATGGCTCGTTGCGGTAGATGTGCAgg > 1:1107693/1‑36 (MQ=37)
tatTCCTGATATGGCTCGTTGCGGAAGATGCGCAgg < 1:6576141/36‑1 (MQ=255)
tatTCCTGATATGGCTCGTTGCGGAAGATGCGCAgg < 1:3736828/36‑1 (MQ=255)
tatTCCTGATATGGCTCCCTTCGGGCGATGTGCAgg > 1:4006021/1‑36 (MQ=9)
ataccTGATATGGCTAGTTGCGGAAGATGCGCAGGt < 1:4948107/33‑1 (MQ=37)
atTCCTGATATGGCTCTTTTCGGCATATGCGCAGGt > 1:3560091/1‑36 (MQ=19)
atTCCTGATATGGCTCGTTTCGGAAGATGCGCAGGt > 1:4871868/1‑36 (MQ=255)
atTCCTGATATGGCTCGTTGCGGAAGATGCGCCGGt > 1:6135434/1‑36 (MQ=255)
atTCCTGATATGGCTCGTTGCGGAAGATGCGCAGGt < 1:7179074/36‑1 (MQ=255)
atTCCTGATATGGCTCGTTGCGGAAGATGCGCAGGt < 1:2298345/36‑1 (MQ=255)
ttCCTGATATGGCTCGTTTCGGAAGATGCGCAggga > 1:1185761/1‑34 (MQ=37)
ttCCTGATATGGCTCGTTGCGGGAGATGCGCAGGta > 1:556517/1‑36 (MQ=255)
ttCCTGATATGGCTCGTTGCGGAAGATGCGCAGGta < 1:1961547/36‑1 (MQ=255)
ttCCTGATATGGCTCCTTGCGGGAGATGCGCCggga > 1:3754827/1‑34 (MQ=21)
tCCTGATATGGCTCGTTTCGGAAGATGCGCAGGtat > 1:5083431/1‑36 (MQ=255)
tCCTGATATGGCTCGTTGCGGAAGATGCGCAGGtat < 1:5871088/36‑1 (MQ=255)
tCCTGATATGGCTCGTTGCGGAAGATGCGCAGGtat > 1:7460088/1‑36 (MQ=255)
tCCTGATATGGCTCGTTGCGGAAGATGCGCAGGtat < 1:3076064/36‑1 (MQ=255)
tCCTGATATGGCTCGCTTCGGGAGGTGCGCTGGtat > 1:5601512/1‑36 (MQ=16)
tCCTGATATGGCTCCCTGCGGAAGATGCGCAGGtat > 1:6253392/1‑36 (MQ=25)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:3514122/36‑1 (MQ=255)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:5491689/36‑1 (MQ=255)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:781524/36‑1 (MQ=255)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:4666252/36‑1 (MQ=255)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:6744392/36‑1 (MQ=255)
ccTGATATGGCTCGTTGCGGAAGATGCGCAGGtata < 1:7480701/36‑1 (MQ=255)
ccTGATATGGCTCCTTTCGGGAGATTGGCAGGgatt > 1:4435985/1‑35 (MQ=9)
cTGATATGGCTCGTTGCGGAAGATGCGCAGGTATAg < 1:5424781/36‑1 (MQ=255)
tGATATGGCTCGTTGCGGAAGATGCGCAGGTATAGc < 1:7562612/36‑1 (MQ=255)
ctatGGCTCGTTGCGGAAGATGCGCAGGTATAGCTc < 1:5984617/35‑1 (MQ=255)
atatGGCTCGTTGCGGAAGATGCGCAGGTATAGCTc < 1:448322/36‑1 (MQ=255)
atatGGCTCGTTGCGGAAGATGCGCAGGTATAGCTc > 1:7746216/1‑36 (MQ=255)
tatGGCTCGTTGCGGAAGATGCGCAGGTATAGCTcc < 1:6295813/36‑1 (MQ=255)
atGGCTCGTTGCGGAAGATGCGCAGGTATAGCTCct < 1:5293799/36‑1 (MQ=255)
atGGCTCGTTGCGGAAGATGCGCAGGTATAGCTCct < 1:4396817/36‑1 (MQ=255)
tGGCTCGTTGCGGCAGATGCGCAGGTATAGCTCctg > 1:2673056/1‑36 (MQ=255)
tGGCTCGTTGCGGAAGATGCGCAGGTATAGCTCctg < 1:5853064/36‑1 (MQ=255)
ggCTCGTTGCGGAAGATGCGCAGGTATAGCTCctgc < 1:4194134/36‑1 (MQ=255)
gCTCGTTGCTGAAGATGCGCAGTTATAGCTCctgct < 1:7508249/36‑1 (MQ=38)
gCTCGTTGCGGAAGATGCGCAGGTATAGCTCctgct > 1:2334352/1‑36 (MQ=255)
cTCGTTGCGGAAGATGCGCAGGTATAGCTCctgctg > 1:4021643/1‑36 (MQ=255)
tCGTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGa < 1:7143000/36‑1 (MQ=255)
gTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGaaa > 1:4223063/1‑36 (MQ=255)
gTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGaaa < 1:5162120/36‑1 (MQ=255)
gTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGaaa < 1:3357040/36‑1 (MQ=255)
gTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGaaa > 1:28188/1‑36 (MQ=255)
gTTGAGGAAGATGCGCAGGTATAGCTCCTGCTGaaa < 1:7689632/36‑1 (MQ=255)
ttGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAAc < 1:4642057/36‑1 (MQ=255)
ttGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAAc < 1:906258/36‑1 (MQ=255)
ttGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAAc < 1:3384532/36‑1 (MQ=255)
tGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAAct < 1:2071704/36‑1 (MQ=255)
tGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAAct < 1:11904/36‑1 (MQ=255)
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ATGGTTTCGCGTACATATTCCTGATATGGCTCGTTGCGGAAGATGCGCAGGTATAGCTCCTGCTGAAACT > REL606/66576‑66645
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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