New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1340206 =27 (0.470)6 (0.100) 3/70 NT 15.6% intergenic (+107/‑86) yciM/pyrF hypothetical protein/orotidine 5'‑phosphate decarboxylase
?REL606 3170213 = 38 (0.660)coding (104/1005 nt) ygjR predicted NAD(P)‑binding dehydrogenase

GCAGAAAAAGCCTGCCAGGGGAAAAATCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCG  >  REL606/1340172‑1340241
                                  |                                   
tgggcctgttcaaggctgcgggaatatacggcgggc                                    <  1:3028033‑M1/2‑2 (MQ=255)
gcAGAAAAAGCCTGCCAGGGGAAAAATCGCAACTGt                                    >  1:6629567/1‑36 (MQ=255)
gcAGAAAAAGCCAGCCAGGGGAAAAATCGCAACTGt                                    >  1:5671922/1‑36 (MQ=255)
  ggcctgttcaaggctgcgggaatatacggcggggta                                  <  1:6006724‑M1/4‑4 (MQ=255)
  aGAAAAAGCCTGCCAGGGGAAAAATCGCAACTGTTa                                  <  1:5791820/36‑1 (MQ=255)
   gcctgttcaaggctgcgggaatatacggcggTTTaa                                 <  1:158885‑M1/5‑1 (MQ=255)
    aaaaaGCCTGCCAGGGGAAAAATCGCAACTGTTAAt                                >  1:270211/1‑36 (MQ=255)
     aaaaGCCTGCCAGGGGAAAAATCGCAACTGTTAAtt                               <  1:3359383/36‑1 (MQ=255)
      aaaGCCTGCCAGGGGAAAAATCGCAACTGTTAAtct                              >  1:703249/1‑34 (MQ=255)
       gttcaaggctgcgggaatatacggcggTTTAAtttt                             <  1:6781589‑M1/9‑1 (MQ=255)
       aaGCCTGCCAGGGGAAAAATCGCAACTGTTAAtttt                             >  1:6129750/1‑36 (MQ=255)
           cTGCCAGGGGAAAAATCGCAACTGTTAATTTTTTAt                         >  1:265866/1‑36 (MQ=255)
           cTGCCAGGGGAAAAATCGCAACTGTTAATTTTTTAt                         >  1:6733023/1‑36 (MQ=255)
            tGCCAGGGGAAAAATCGCAACTGTTAATTTTTTAtt                        >  1:2103992/1‑36 (MQ=255)
             gCCAGGGGAAAAATCGCAACTGTTAATTTTTTAttt                       >  1:6929762/1‑36 (MQ=255)
              gctgcgggaatatacggcggGTTAATTTTTTTTTTc                      <  1:3138902‑M1/16‑1 (MQ=255)
               ctgcgggaatatacggcggGTTAATTTTTTTTTTcc                     <  1:3623525‑M1/17‑1 (MQ=255)
               cAGGGGAAAAATCGCAACTGTTAATTTTTTATTTcc                     >  1:683858/1‑36 (MQ=255)
                 ggggAAAAATCGCAACTGTTAATTTTTTATTTCCAc                   >  1:6462413/1‑36 (MQ=255)
                 ggggAAAAATCGCAACTGTTAATTTTTTATTTCCAc                   <  1:4796594/36‑1 (MQ=255)
                    gAAAAATCGCAACTGTTAATTTTTTATTTCCACggg                >  1:4943670/1‑36 (MQ=255)
                    gAAAAATCGCAACTGTTAATTTTTTATTTCCACggg                <  1:3238871/36‑1 (MQ=255)
                     aaaaaTCGCAACTGTTAATTTTTTATTTCCACGGGt               <  1:2845217/36‑1 (MQ=255)
                     aaaaaTCGCAACTGTTAATTTTTTATTTCCACGGGt               >  1:2528068/1‑36 (MQ=255)
                     aaaaaTCGCAACTGTTAATTTTTTATTTCCACGGGt               >  1:7376271/1‑36 (MQ=255)
                        aaTCGCAACTGTTAATTTTTTATTTCCACGGGTAGa            >  1:905328/1‑36 (MQ=255)
                         aTCGCAACTGTTAATTTTTTATTTCCACGGGTAGaa           <  1:3913986/36‑1 (MQ=255)
                          tCGCAACTGTTAATTTTTTATTTCCACGGGTAGAAt          >  1:4489264/1‑36 (MQ=255)
                          tCGCAACTGTTAATTTTTTATTTCCACGGGTAGAAt          >  1:7428792/1‑36 (MQ=255)
                            gCAACTGTTAATTTTTTATTTCCACGGGTAGAATGc        >  1:1859861/1‑36 (MQ=255)
                              aaCTGTTAATTTTTTATTTCCACGGGTAGAATGCTc      >  1:3422622/1‑36 (MQ=255)
                              aaCTGTTAATTTTTTATTTCCACGGGTAGAATGCTc      <  1:7251644/36‑1 (MQ=255)
                                 tGTTAATTTTTTATTTCCACGGGTAGAATGCTCGcc   <  1:2511813/36‑1 (MQ=255)
                                  gTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCg  >  1:435552/1‑36 (MQ=255)
                                  |                                   
GCAGAAAAAGCCTGCCAGGGGAAAAATCGCAACTGTTAATTTTTTATTTCCACGGGTAGAATGCTCGCCG  >  REL606/1340172‑1340241

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG