Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 77 [1] | [0] 63 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 57 (1.010) | 36/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:1624707/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:4833706/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:4710063/1‑36 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:3538333/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:7136559/1‑36 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:7705569/1‑36 (MQ=1)
GTTTAACTGTCCAACTTTTTGGGGTCAGTACATGTT > 1:3311491/1‑36 (MQ=38)
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTa > 1:4167577/1‑35 (MQ=1)
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:2609794/36‑1 (MQ=1)
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:4482414/1‑36 (MQ=1)
GTTTAACTGTCCAACGTTTTGGGGTCAGTACAGGTT < 1:4319256/36‑1 (MQ=0)
TTTAACTGTCCAACTTTTTGGGGTTAGTACAGGTTG > 1:8226643/1‑36 (MQ=0)
TTTAACTGTCCAACTTTTTGGGGTCAGTACATGTTG > 1:5908830/1‑36 (MQ=38)
TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgag < 1:5584253/36‑4 (MQ=0)
TTAACTGTCCAACTTTTTGGGGTCAGTACATGTTGa < 1:5231184/36‑2 (MQ=40)
TTAACTGTCCAACTTTTTGGGGTCAGTACATGTTGa < 1:1624369/36‑2 (MQ=40)
TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC < 1:7670961/36‑1 (MQ=1)
TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC > 1:5407903/1‑36 (MQ=1)
TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC > 1:2825879/1‑36 (MQ=1)
TTAACTGTCCAACTTTTTGGGGTCAGTACAGGGTGC < 1:7786761/36‑1 (MQ=0)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:3778376/1‑36 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC < 1:2825816/36‑1 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 1:6553673/1‑36 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:6680120/36‑1 (MQ=1)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 1:5874836/1‑36 (MQ=1)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 1:76155/36‑1 (MQ=1)
CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG > 1:967041/1‑36 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG < 1:3430011/36‑1 (MQ=1)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG < 1:8477120/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:7815033/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:5094003/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:4755067/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:2605940/36‑1 (MQ=1)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:1222132/36‑1 (MQ=32)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 1:3508877/1‑36 (MQ=32)
CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA < 1:5912454/36‑1 (MQ=35)
CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC > 1:5767882/1‑36 (MQ=38)
ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 1:1083409/1‑36 (MQ=38)
CTTTTTGTGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:2153779/36‑1 (MQ=255)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:3431494/36‑1 (MQ=38)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG > 1:3430241/1‑36 (MQ=38)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:5212371/36‑1 (MQ=40)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:4565127/36‑1 (MQ=40)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:5555194/36‑1 (MQ=40)
TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:7798038/36‑1 (MQ=255)
TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA > 1:2798417/1‑36 (MQ=255)
TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:2804682/36‑1 (MQ=255)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:1104239/36‑1 (MQ=255)
TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC < 1:5712223/36‑1 (MQ=38)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:741927/36‑1 (MQ=38)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 1:7969831/36‑1 (MQ=38)
GGTCAGTACAGGTTGCCCAGGTGACCAGCTCGCCGC < 1:4317586/36‑1 (MQ=255)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:3281441/36‑1 (MQ=38)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:7714081/1‑36 (MQ=38)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG > 1:2868249/1‑36 (MQ=38)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:7358151/36‑1 (MQ=32)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:1787008/36‑1 (MQ=32)
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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