Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 54 [3] | [0] 44 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 37 (0.670) | 27/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:1204577/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:2697924/36‑1 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC < 1:24570/36‑1 (MQ=1)
TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:7447282/1‑36 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCa > 1:6944651/1‑35 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:1530738/36‑1 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 1:3832823/1‑36 (MQ=1)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 1:3425479/1‑36 (MQ=1)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 1:6861061/1‑36 (MQ=1)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 1:3216303/36‑1 (MQ=1)
CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 1:6193507/36‑1 (MQ=1)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT > 1:4716605/1‑36 (MQ=1)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:6601788/36‑1 (MQ=1)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:1182490/36‑1 (MQ=1)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 1:3280724/36‑1 (MQ=1)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG > 1:880125/1‑36 (MQ=1)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC > 1:2898066/1‑36 (MQ=1)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:2095577/36‑1 (MQ=1)
TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:934093/36‑1 (MQ=32)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:2344073/36‑1 (MQ=35)
TGGGGTCAGTACAGGTTGCCCAGGTGATCAGCACGC < 1:5586980/36‑1 (MQ=38)
TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC < 1:178612/36‑1 (MQ=38)
TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:6120011/1‑36 (MQ=38)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:4938404/36‑1 (MQ=38)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:2951071/36‑1 (MQ=38)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC > 1:7129715/1‑36 (MQ=38)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG > 1:6339565/1‑36 (MQ=38)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:3540023/36‑1 (MQ=38)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:6410723/36‑1 (MQ=38)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 1:5843826/1‑36 (MQ=38)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:4306323/36‑1 (MQ=35)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:4718499/36‑1 (MQ=35)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:4545028/36‑1 (MQ=35)
TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA > 1:3241821/1‑36 (MQ=1)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:4427222/36‑1 (MQ=1)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 1:4986518/1‑36 (MQ=1)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 1:7877541/1‑36 (MQ=1)
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|