Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,735,994 | 0 | C→G | 6.6% | 3.2 ‑9.6 0.0 | 105 | 145 | ascB | cryptic 6‑phospho‑beta‑glucosidase |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (8/0): ref base (26/70): total (35/70) | ||||||||||
Fisher's exact test strand distribution p-value = 7.05e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
CACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGTTT > REL606/2735959‑2736029
|
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGTGGc < 1:7435561/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:3234420/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:6337408/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:5256865/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:5561494/36‑1 (MQ=255)
acaTGGCGAGCATCGAATGGCGG.TG.GAACTTGGGCt > 1:7490456/1‑36 (MQ=37)
acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt < 1:7478468/36‑1 (MQ=255)
acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt < 1:526716/36‑1 (MQ=255)
caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg < 1:7632797/36‑1 (MQ=255)
caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg < 1:1036269/36‑1 (MQ=255)
aTGGCGAGCATCGAATGGCGG.TG.GAAATGGGGCTgg > 1:7650688/1‑36 (MQ=37)
aTGGCGAGCATCGAATGGCGG.TG.AAACTTGGGCttg > 1:2519649/1‑34 (MQ=38)
aTGGCGAGCATCGAATGGCGG.GG.AAACTGGGGCTgg > 1:7066191/1‑36 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGGTggg > 1:4970005/1‑35 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:5992981/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:4351067/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:2830970/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:1200523/36‑1 (MQ=255)
cggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:4614050/35‑1 (MQ=255)
ggCGAGCATCGAATTGCGG.TG.AAACTGGGGCTGGaa < 1:626235/36‑1 (MQ=255)
ggCGAGCATCGAATGGCGG.TG.GGACTGGGGGTggga > 1:4269396/1‑34 (MQ=21)
ggCGAGCATCGAATGGCGG.TG.GAAATTGGGCGggga > 1:3231131/1‑34 (MQ=16)
ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:4264318/36‑1 (MQ=255)
ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:5148352/36‑1 (MQ=255)
ggCGAACATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:5216009/36‑1 (MQ=255)
gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa < 1:231613/36‑1 (MQ=255)
gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa < 1:5538425/36‑1 (MQ=255)
cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa < 1:1893677/36‑1 (MQ=255)
cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa < 1:7531947/36‑1 (MQ=255)
gAGCATCGAATGGCGG.TGAAAACTGGGGGGGGaaaa > 1:2118797/1‑36 (MQ=16)
gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa < 1:2389999/36‑1 (MQ=255)
gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa < 1:803035/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:5795395/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:6482206/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:3737854/36‑1 (MQ=255)
aGCATCGAATGGCGG.GG.AAACTGGGGCTGGGAAAAc > 1:5875267/1‑36 (MQ=37)
aGCATCGAATGGCGG.CG.GAACTGGGGGTGGaacaaa > 1:924790/1‑35 (MQ=16)
gCATCGAATGGCGGCGG.AAATTAGGGGTGGgaaaaa > 1:5120213/1‑35 (MQ=0)
gCATCGAATGGCGG.TG.AAACTGGGGGTGGgaaaaag > 1:2459014/1‑34 (MQ=25)
gCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACg < 1:4903341/36‑1 (MQ=255)
cATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGt < 1:4749623/36‑1 (MQ=255)
tctaaTGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:6748780/33‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGTCTGGAAAAACGttt < 1:1075479/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:1243439/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:3120013/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:2534714/36‑1 (MQ=255)
cGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGtttt < 1:8334566/36‑1 (MQ=255)
gAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTc < 1:7097397/36‑1 (MQ=255)
aTGGCGG.TGAAAAATGGGGTGGGAAAAAATtttttg > 1:3807395/1‑34 (MQ=2)
aTGGCGG.TG.GAACTGGGGCTGGAAAAACGTTTTCAg < 1:3362099/36‑1 (MQ=255)
aTGGCGG.TG.AAACAGGGGGTGGGAAAAAGTTTTTAg > 1:20032/1‑36 (MQ=16)
tGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGt < 1:2343083/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:1882446/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg > 1:1351041/1‑36 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg > 1:4657050/1‑36 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:4251907/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:1228703/36‑1 (MQ=255)
gCGG.TG.AAACTAGGGCTGGAAAAACGTTTTCAGTTg < 1:2593161/36‑1 (MQ=255)
cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc < 1:4339652/36‑1 (MQ=255)
cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc < 1:6061069/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:8451297/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg > 1:610725/1‑36 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:4470762/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:2227285/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:4100827/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg > 1:1025065/1‑36 (MQ=255)
g.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcgc < 1:2813153/36‑1 (MQ=255)
tG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGcgcg < 1:965159/36‑1 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa > 1:2897027/1‑36 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa < 1:7127807/36‑1 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa > 1:4340649/1‑36 (MQ=255)
aaaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGAt > 1:6997752/1‑36 (MQ=255)
aaaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGAt < 1:3713111/36‑1 (MQ=255)
aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCTATg < 1:2938167/36‑1 (MQ=255)
aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATg < 1:1137977/36‑1 (MQ=255)
aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATg > 1:6987714/1‑36 (MQ=255)
ccTGGAGCTGGAAAAACGTTTTCAGTTGCGCGAtta < 1:7802760/35‑3 (MQ=37)
aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa < 1:7557592/36‑1 (MQ=255)
aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa < 1:3843970/36‑1 (MQ=255)
aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa < 1:6541821/36‑1 (MQ=255)
aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa < 1:5406615/36‑1 (MQ=255)
aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa < 1:6973107/36‑1 (MQ=255)
tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg > 1:3501211/1‑36 (MQ=255)
tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg > 1:2821656/1‑36 (MQ=255)
tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg < 1:5569791/36‑1 (MQ=255)
tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg < 1:6141000/36‑1 (MQ=255)
tGGGGCTGGAAAAACGTTTTCAGTTGAGCGATGACg > 1:5167844/1‑36 (MQ=255)
ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa > 1:1949084/1‑36 (MQ=255)
ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa > 1:1090879/1‑36 (MQ=255)
ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa > 1:5986992/1‑36 (MQ=255)
ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt < 1:965511/36‑1 (MQ=255)
ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt > 1:2638983/1‑36 (MQ=255)
ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt < 1:2101686/36‑1 (MQ=255)
gCTGGAAAAGCGTTTTCAGTTGCGCGATGTCGAGtt < 1:3320097/36‑1 (MQ=37)
gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt < 1:4582170/36‑1 (MQ=255)
gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt > 1:7857836/1‑36 (MQ=255)
gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt > 1:285920/1‑36 (MQ=255)
gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt < 1:174343/36‑1 (MQ=255)
cTGGAAAAACGTTTTCAGTTGCGCGATGACGAGttt > 1:6881014/1‑36 (MQ=255)
cTGGAAAAACGTTTTCAGTTGCGCGATGACGAGttt > 1:3273299/1‑36 (MQ=255)
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CACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGTTT > REL606/2735959‑2736029
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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