New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 78449026 (0.460)3 (0.050) 3/64 NT 9.2% coding (359/2262 nt) ybhJ predicted hydratase
?REL606 3912266 = 33 (0.530)intergenic (+46/‑94) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

TGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATC  >  REL606/784455‑784525
                                   |                                   
tGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGG                                     <  1:2921457‑M1/36‑1 (MQ=255)
 gTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGt                                    <  1:4763301/36‑1 (MQ=255)
  tttttGGTTTATCGGCGGCCCAGCGTTATGGCGGgg                                   >  1:7955109‑M1/1‑34 (MQ=255)
   ttttGGTTTATCGGCGGCCCCGCGTTTTTGCggggg                                  >  1:7544490/1‑33 (MQ=16)
     ttGGTTTATCGGCGGCCCAGCTTTATGGCGGTAttt                                <  1:5577239/36‑1 (MQ=255)
       ggTTTATCGGCGGCCGAGCGTTATGGCGGTAttttt                              <  1:4323089/36‑1 (MQ=255)
       ggTTTATCGGCGGCCCAGCGTTATGGCGGTAttttt                              <  1:1428991/36‑1 (MQ=255)
        gTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTtg                             <  1:5154199/36‑1 (MQ=255)
         tttATCGGCGGCCCAGCGTTATGGCGGTATTTTtgt                            <  1:13115/36‑1 (MQ=255)
         tttATCGGCGGCCCAGCGTTATGGCGGTATTTTtgt                            <  1:1421509/36‑1 (MQ=255)
          ttATCGGCGGCCCAGCGTTTTGGCGGgggttttttt                           >  1:8290936‑M1/1‑26 (MQ=255)
          ttATCGGCCGCCCAGCGTTATGGCGGTATTTTtgtg                           <  1:2249643/36‑1 (MQ=255)
           tATCGGCGGCCCCGCGTTATGGCGGgggtttttttt                          >  1:1465031‑M1/1‑25 (MQ=255)
           tATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGc                          <  1:4429/36‑1 (MQ=255)
            aTCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGcc                         <  1:2124904/36‑1 (MQ=255)
              ctgcggcCCAACGTTATGGCGGTATTTTTTTGCCTc                       <  1:6497282/34‑1 (MQ=21)
               ggcggcCCAGCGTTATGGCGGTATTTTTGTGCCTcc                      <  1:5123954/36‑1 (MQ=255)
                 cggcCCAGCGTTATGGCGGTATTTTTGTGCCTCCGc                    <  1:3006169/36‑1 (MQ=255)
                   gcCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCat                  <  1:3714715/36‑1 (MQ=255)
                   gcCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCat                  <  1:6724755/36‑1 (MQ=255)
                   gcCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCat                  <  1:980935/36‑1 (MQ=255)
                     ccAGCGTTATGGCGGTATTTTTGTGCCTCCGCatat                <  1:2876961/36‑1 (MQ=255)
                      cAGCGTTATGGCGGTATTTTTGTGCCTCCGCATAtt               <  1:5267129/36‑1 (MQ=255)
                       aGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTg              <  1:5078698/36‑1 (MQ=255)
                        gCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGc             <  1:4873344/36‑1 (MQ=255)
                            tATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTc         <  1:7102398/36‑1 (MQ=255)
                            tATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTc         <  1:8199077/36‑1 (MQ=255)
                            tATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTc         <  1:124983/36‑1 (MQ=255)
                                gCGGTATTTTTGTGCCTCCGCATATTGCGGTcatcc     <  1:1954578/36‑1 (MQ=255)
                                 cGGgggttttttttgaccttaaaaacataaccgagg    >  1:4118219‑M1/1‑3 (MQ=255)
                                 cGGTATTTTTGTGCCTCCGCATATTGCGGTcatcca    >  1:6889427/1‑36 (MQ=255)
                                  gggggttttttttgaccttaaaaacataaccgagga   <  1:642736‑M1/36‑35 (MQ=255)
                                  gggggttttttttgaccttaaaaacataaccgagga   >  1:4398470‑M1/1‑2 (MQ=255)
                                  ggTATTTTTGTGCCTCCGCATATTGCGGTcatccat   <  1:762857/36‑1 (MQ=255)
                                   gTATTTTTGTGCCTCCGCATATTGCGGTcatccatc  >  1:6402275/1‑36 (MQ=255)
                                   |                                   
TGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATC  >  REL606/784455‑784525

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG