Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,893,550 | +G | 4.8% | intergenic (+5/‑51) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,893,550 | 1 | .→G | 4.8% | 7.4 0.0 ‑0.1 | 62 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): new base (1/2): ref base (26/33): total (27/35) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.14e-01 |
TATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
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tATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..a < 1:8296114/36‑1 (MQ=255)
tATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..a > 1:5228505/1‑36 (MQ=255)
aTCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..g > 1:8070720/1‑36 (MQ=255)
tCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..Ga > 1:2632029/1‑36 (MQ=255)
tgtttaactgtccacctttttggggtcagtaC..A..GAc > 1:5633225‑M1/32‑36 (MQ=255)
tgtttaactgtccaactttttggggtcagtaC..A..GAc > 1:268887‑M1/32‑36 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GAc < 1:4513083/36‑1 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GAc < 1:515615/36‑1 (MQ=255)
gtttaactgtccaactttttggggtcagtaC..A..GACt < 1:5109585‑M1/6‑1 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACt > 1:4248728/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACt > 1:6077975/1‑36 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt < 1:7813515/36‑1 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt < 1:2776400/36‑1 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt > 1:2176603/1‑36 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACACC..A..GACTGt < 1:2524519/36‑1 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTa > 1:4729795/1‑36 (MQ=255)
tGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTAc < 1:5377606/36‑1 (MQ=255)
gggTACTCAGGTCGAAATCTAACGCC..A..GACTGTACt < 1:991601/36‑1 (MQ=255)
ggTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTg < 1:2925741/36‑1 (MQ=255)
gTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGc > 1:1858315/1‑36 (MQ=255)
tACTCAGGTCGAAATCTAACGCC..AG.GACTGTACTGc < 1:5999114/36‑1 (MQ=37)
tACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCa < 1:7968813/36‑1 (MQ=255)
tACTCAGGTAGAAATCTATCGCA..A..GACTGTACTGCa > 1:1452899/1‑36 (MQ=25)
aCTCAGGTCGAAATCTAACGCC..AGGGACTGTACTGc < 1:1355945/36‑1 (MQ=25)
aCTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCAc < 1:6850951/36‑1 (MQ=255)
aCTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCAc < 1:7519249/36‑1 (MQ=255)
caactttttggggtcagtaC..A..GACTGTACTGCAccc > 1:7595546‑M1/20‑36 (MQ=255)
cAGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCa < 1:4292360/36‑1 (MQ=255)
aGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCAt > 1:7994305/1‑36 (MQ=255)
aGGCCGAAATCTAACGCC..A..GACTGTACTGCACCCAt < 1:3467933/36‑1 (MQ=255)
gTCGAAATCTAACGCC..A..GACTGTACTGCACCCAttt > 1:1596533/1‑36 (MQ=255)
gTCGAAATCAAACGCC..A..GACTGTACTGCACCCAttt < 1:2349551/36‑1 (MQ=255)
tCGAAATCTAACGCC..A..GACTGTACTGCCCCCAtttt < 1:13831/36‑1 (MQ=255)
cGAAATCTAACGCC..A..GACTGTACTGCACCCATTttg < 1:5766651/36‑1 (MQ=255)
gAAATCTAACGCC..A..GACTGTACTGCACCCATTttgt < 1:5788687/36‑1 (MQ=255)
aaaTCTAACGCC..A..GACTGTACTGCACCCATTttgtt < 1:8398735/36‑1 (MQ=255)
aaaTCTAACGCC..A..GACTGTACTGCACCCATTttgtt > 1:2436293/1‑36 (MQ=255)
aaTCTAACGCCAGA..GACTGTACTGCACCCATTttgt < 1:6215601/36‑1 (MQ=17)
gggtcagtaC..A..GACTGTACTGCACCCATTTTGTTgg < 1:2817926‑M1/27‑1 (MQ=255)
aTCTAACGCC..A..GACTGTACTGCACCCATTTTGTTgg > 1:667134/1‑36 (MQ=255)
aTCTAACGCC..A..GACTGTACTGCACCCATTTTGTTgg < 1:232999/36‑1 (MQ=255)
aTCTAACGCC..A..GACTGTACTGCACCCATTTTGTTgg > 1:4831787/1‑36 (MQ=255)
tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa > 1:5388018/1‑36 (MQ=255)
tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa < 1:4853880/36‑1 (MQ=255)
tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa > 1:3107208/1‑36 (MQ=255)
tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa > 1:6850058/1‑36 (MQ=255)
cTAATGCC..A..GACTGTACTGCACCCATTTTGTTGGAc < 1:8263360/36‑1 (MQ=255)
cTAACGCC..A..GACTGTACTGCGCCCATTTTGTTGGAc < 1:356076/36‑1 (MQ=255)
aaCGCC..A..GACTGTACTGCACCCATTTTGTTGGACGa < 1:3519170/36‑1 (MQ=255)
aCGCC..A..GACTGTACTGCACCCGCTTTGTTGGACGAt < 1:8332064/36‑1 (MQ=18)
aCGCC..A..GACTGTACTGCACCCATTTTGTTGGACGAt < 1:1074364/36‑1 (MQ=255)
cGCC..AG.GACTGTACTGCACCCATTTTGTTGGACGAt > 1:3684187/1‑36 (MQ=11)
gCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGa < 1:7201701/36‑1 (MQ=255)
gCC..A..GACTGTAATGCCCCCATTTTGTTGGACGATGa < 1:7533339/36‑1 (MQ=17)
ccc..A..GACTGTACTACACCCATTTTGTTGGACGATGa < 1:7802520/35‑1 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:5247368/1‑36 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:5055145/1‑36 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa < 1:4780760/36‑1 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:3602261/1‑36 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:3096512/1‑36 (MQ=255)
cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:1724356/1‑36 (MQ=255)
cagA..GACTGTACTGCACCCATTTTGTTGGACGATGa < 1:4123569‑M1/33‑1 (MQ=255)
C..A..GACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:2892839‑M1/1‑36 (MQ=255)
C..A..GACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:1535233‑M1/1‑36 (MQ=255)
A..GACTGTACTGCACCCATTTTGTTGGACGATTAAAt > 1:2878227‑M1/1‑36 (MQ=255)
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TATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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