New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1241877 =33 (0.670)8 (0.160) 3/56 NT 19.8% coding (345/1737 nt) ycgO potassium/proton antiporter
?REL606 = 4081036 32 (0.520)intergenic (+124/‑136) sodA/kdgT superoxide dismutase, Mn/2‑keto‑3‑deoxygluconate permease

GCGCCGATTAATAAGCCTTCAATCAAATCAAGATTAAACAGCCACGCCGCCATCATGCCGGTTAAACCAGA  >  REL606/1241842‑1241912
                                   |                                   
gcgcCGATTAATAAGCCTTCAATCAAATCAAGATTa                                     <  1:898770/36‑1 (MQ=255)
gcgcCGATTAATAAGCCTTCAATCAAATCAAGATTa                                     <  1:1979371/36‑1 (MQ=255)
aatttcaaaataaaaacaatgatccgataaaaataa                                     <  1:920134‑M1/1‑1 (MQ=255)
aatttaaaaataaaaacaatgatccgataaaaataa                                     >  1:3682339‑M1/36‑36 (MQ=255)
 atttcaaaataaaaacaatgatccgataaaaataaa                                    >  1:5485179‑M1/35‑36 (MQ=255)
  tttcaaaataaaaacagtgatccgataaaaataaaa                                   <  1:6855862‑M1/3‑1 (MQ=255)
  tttaaaaataaaaacaatgatccgataaaaataaaa                                   >  1:6428957‑M1/34‑36 (MQ=255)
   ttcaaaataaaaacaatgatccgataaaaataAAAc                                  <  1:6594176‑M1/4‑1 (MQ=255)
   ttcaaaataaaaacaatgatccgataaaaataAAAc                                  <  1:1551838‑M1/4‑1 (MQ=255)
   ccGATTAATAAGCCTTCAATCAAATCAAGATTAAAc                                  >  1:3778791/1‑36 (MQ=255)
    tcaaaataaaaacaatgatccgataaaaataAAACa                                 >  1:8365612‑M1/32‑36 (MQ=255)
     gATTAATAAGCCTTCAATCAAATCAAGATTAAACAg                                >  1:6568856/1‑36 (MQ=255)
      aTTAATAAGCCTTCAATCAAATCAAGATTAAACAGc                               >  1:6986054/1‑36 (MQ=255)
      aTTAATAAGCCTTCAATCAAATCAAGATTAAACAGc                               <  1:3226424/36‑1 (MQ=255)
       ttAATAAGCCTTCAATCAAATCAAGATTAAACAGcc                              >  1:6362025/1‑36 (MQ=255)
         aataaGCCTTCAATAAAATCAAGATTAAACAGCCAc                            >  1:8327446/1‑36 (MQ=255)
           taaGCCTTCAATCAAATCAAGATTAAACAGCCAcgc                          >  1:1032542/1‑36 (MQ=255)
           taaGCCTTAAATCAAATCAAGATTAAACAGCCAcgc                          <  1:1024526/36‑1 (MQ=255)
            aaGCCTTCAATCAAATCAAGATTAAACAGCCAcgcc                         >  1:2041444/1‑36 (MQ=255)
            aaGCCTTCAATAAAATCAAGATTAAACAGCCAcgcc                         <  1:2302311/36‑1 (MQ=255)
              gCCCTCAACCAAATAAAAATTAAACAGCCAcgccgc                       <  1:4862675/36‑1 (MQ=16)
                 ttCAATCAAATCAAGATTAAACAGCCACGCCGCcat                    >  1:7963211/1‑36 (MQ=255)
                 ttCAATCAAATCAAGATTAAACAGCCACGCCGCcat                    >  1:4018045/1‑36 (MQ=255)
                  tcaatcaaATCAAGATTAAACAGCCACGCCGCcatc                   >  1:7632905/1‑36 (MQ=255)
                   caatcaaATCAAGATTAAACAGCCACGCCGCcatca                  >  1:322773/1‑36 (MQ=255)
                   caatcaaATCAAGATTAAACAGCCACGCCGCcatca                  >  1:3177272/1‑36 (MQ=255)
                   caatcaaATCAAGATTAAACAGCCACGCCGCcatca                  >  1:5426472/1‑36 (MQ=255)
                    aatcaaatcaAGATTAAACAGCCACGCCGCcatcat                 >  1:2728491/1‑36 (MQ=255)
                    aatcaaatcaAGATTAAACAGCCACGCCGCcatcag                 >  1:5890863/1‑35 (MQ=255)
                    aatcaaatcaAGATTAAACAGCCACGCCGCaatcat                 >  1:7901847/1‑36 (MQ=255)
                    aataaaannnAGATAAAACAGCCACGCCGCcatcat                 <  1:922855/36‑1 (MQ=25)
                     atcaaaaaaaGATTAAACAGCCACGCCGCCATCATg                <  1:7547048/36‑1 (MQ=37)
                     aaaaaataaaGATTAAACAGCCACGCCGCCATCATg                <  1:647185/33‑1 (MQ=37)
                      tcaaatcaaGATTAAACAGCCACGCCGCCATCATGc               >  1:2998318/1‑36 (MQ=255)
                        aaatcaaGATTAAACATCCACGCCGCCATCATGCCg             <  1:3508230/36‑1 (MQ=255)
                        aaatcaaGATTAAACAGCCACGCCGCCATCATGCCg             >  1:992841/1‑36 (MQ=255)
                        aaatcaaGATTAAACAGCCACGCCGCCATCATGCCg             >  1:827537/1‑36 (MQ=255)
                        aaataaaaataAAACAGCCACGCCGCCATCATGCCg             >  1:8142531‑M1/12‑36 (MQ=255)
                         aatcaaGATTAAACAGCCACGCCGCCATCATGCCgg            >  1:7080702/1‑36 (MQ=255)
                          ataaaaataAAACAGCCACGCCGCCATCATGCCGGt           >  1:3042008‑M1/10‑36 (MQ=255)
                           taaaaataAAACAGCCACGCCGCCATCATGCCGGtt          >  1:986090‑M1/9‑36 (MQ=255)
                           taaaaataAAACAGCCACGCCGCCATCATGCCGGtt          >  1:6209660‑M1/9‑36 (MQ=255)
                           aaaagataAAACAGCCACGCCGCCATCATGCCGGtt          >  1:5125927‑M1/9‑36 (MQ=255)
                           aaaaaataAAACAGCCACGCCGCCATCATGCCGGtt          >  1:5703257‑M1/9‑36 (MQ=255)
                           aaaaGATTAAACAGCCACGCCGCCATCATGCCGGtt          <  1:2135527/34‑1 (MQ=255)
                            caaGATTAAACAGCCACGCCGCCATCATGCCGGTTa         >  1:3444243/1‑36 (MQ=255)
                             aaGATTAAACAGCCACGCCGCCATCATGCCGGTTaa        >  1:3904508/1‑36 (MQ=255)
                              agataAAACAGCCACGCCGCCATCATGCCGGTTaaa       >  1:2582208‑M1/6‑36 (MQ=255)
                              aGATTAAACAGCCACGCCGCCATCATGCCGGTTaaa       >  1:2826073/1‑36 (MQ=255)
                              aGATTAAACAGCCACGCCGCCATCATGCCGGTTaaa       >  1:6233612/1‑36 (MQ=255)
                               gATTAAACAGCCACGCCGCCATCATGCCGGTTAAAc      >  1:8020313/1‑36 (MQ=255)
                                 ttAAACAGCCACGCCGCCATCATGCCGGTTAAACCa    >  1:3221992/1‑36 (MQ=255)
                                 ttAAACAGCCACGCCGCCATCATGCCGGTTAAACCa    >  1:2410239/1‑36 (MQ=255)
                                 taAAACAGCCACGCCGCCATCATGCCGGTTAAACCa    >  1:6788997‑M1/3‑36 (MQ=255)
                                  tAAACAGCCACGCCGCCATCATGCCGGTTAAACCag   >  1:376348/1‑36 (MQ=255)
                                   AAACAGCCACGCCGCCATCATGCCGGTTAAACCaga  <  1:5697507‑M1/36‑1 (MQ=255)
                                   |                                   
GCGCCGATTAATAAGCCTTCAATCAAATCAAGATTAAACAGCCACGCCGCCATCATGCCGGTTAAACCAGA  >  REL606/1241842‑1241912

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG