New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2822187 =NA (NA)32 (0.570) 26/64 NT 56.1% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997504 25 (0.400)coding (172/903 nt) ECB_02798 conserved hypothetical protein

Only 100 of 138 total aligned reads displayed.

CATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/2822152‑2822221
                                   |                                  
cATGATGTTGTAACAAAGTTGCCTTACGATTTTTgg                                    >  1:4779947/1‑36 (MQ=255)
cATGATGTTGTAACAAAGTTGCCTTACGATTTTTgg                                    >  1:816764/1‑36 (MQ=255)
aaatctgaacatcacactttcagattttgaacttgg                                    <  1:2969424‑M1/1‑1 (MQ=255)
 aatctgaacatcacactttcagattttgaacttggg                                   >  1:3340618‑M1/35‑36 (MQ=255)
  tgatgTTGTAACAAAGTTGCCTTACGATTTTTGGGt                                  <  1:1664344/36‑1 (MQ=255)
  atctgaacatcacactttaagattttgaacttgGGt                                  <  1:7574490‑M1/3‑1 (MQ=255)
   gatgTTGTAACAAAGTTGCCTTACGATTTTTGGGTa                                 >  1:5116872/1‑36 (MQ=255)
   gatgTTGTAACAAAGTTGCCTTACGATTTTTGGGTa                                 >  1:3132798/1‑36 (MQ=255)
    atgTTGTAACAAAGTTGCCTTACGATTTTTGGGTaa                                >  1:2354945/1‑36 (MQ=255)
    atgTTGTAACAAAGTTGCCTTACGATTTTTGGGTaa                                <  1:628727/36‑1 (MQ=255)
     tgttgtAACAAAGTTGCCTTACGATTTTTGGGTAAt                               <  1:4926085/36‑1 (MQ=255)
     tgttgtAACAAAGTTGCCTTACGATTTTTGGGTAAt                               >  1:8115677/1‑36 (MQ=255)
     tgttgtAACAAAGTTGCCTTACGATTTTTGGGTAAt                               >  1:5190581/1‑36 (MQ=255)
      gttgtAACAAAGTTGCCTTACGATTTTTGGGTAATg                              >  1:4941470/1‑36 (MQ=255)
      gttgtAACAAAGTTGCCTTACGATTTTTGGGTAATg                              >  1:688623/1‑36 (MQ=255)
      gttgtAACAAAGTTGCCTTACGATTTTTGGGTAATg                              >  1:113539/1‑36 (MQ=255)
      ggtgtAACAAAGTTGCCTTACGATTTTTGGGTAATg                              >  1:5545783/3‑36 (MQ=255)
       ttgtAACAAAGTTGCCTTACGATTTTTGGGTAATGa                             <  1:1798143/36‑1 (MQ=255)
       ttgtAACAAAGTTGCCTTACGATTTTTGGGTAATGa                             >  1:6509695/1‑36 (MQ=255)
        acatcacactttcagattttgaacttgGGTAATGAc                            >  1:3960175‑M1/28‑36 (MQ=255)
        acatcacactttcagattttgaacttgGGTAATGAc                            >  1:3221975‑M1/28‑36 (MQ=255)
         gtAACAAAGTTGCCTTACGATTTTTGGGTAATGACt                           <  1:1573896/36‑1 (MQ=255)
          tAACAAAGTTGCCTTACGATTTTTGGGTAATGACTc                          >  1:3553848/1‑36 (MQ=255)
          atcacactttcagattttgaacttgGGTAATGACTc                          >  1:2806725‑M1/26‑36 (MQ=255)
          atcacactttcagattttgaacttgGGTAATGACTc                          <  1:2000017‑M1/11‑1 (MQ=255)
           aaCAAAGTTGCCTTACGATTTTTGGGTAATGACTcc                         <  1:2987368/36‑1 (MQ=255)
           aaCAAAGTTGCCTTACGATTTTTGGGTAATGACTcc                         >  1:17078/1‑36 (MQ=255)
           aaCAAAGTTGCCTTACGATTTTTGGGTAATGACTcc                         >  1:6808316/1‑36 (MQ=255)
            aCAAAGTTGCCTTACGATTTTTGGGTAATGACTCCa                        <  1:3923605/36‑1 (MQ=255)
             cAAAGTTGCCTTACGATTTTTGGGTAATGACTCCaa                       <  1:1714541/36‑1 (MQ=255)
             cAAAGTTGCCTTACGATTTTTGGGTAATGACTCCaa                       <  1:3478148/36‑1 (MQ=255)
             acattttcagattttgaacttgGGTAATGACTCCaa                       <  1:5455090‑M1/14‑1 (MQ=255)
              cactttcagattttgaacttgGGTAATGACTCCAAc                      <  1:6689261‑M1/15‑1 (MQ=255)
              aaaGTTGCCTTACGATTTTTGGGTAATGACTCCAAc                      <  1:3557641/36‑1 (MQ=255)
               actttcagattttgaacttgGGTAATGACTCCAACt                     <  1:429141‑M1/16‑1 (MQ=255)
               actttcagattttgaacttgGGTAATGACTCCAACt                     >  1:7915755‑M1/21‑36 (MQ=255)
               aaGTTGCCTTACGATTTTTGGGTAATGACTCCAACt                     >  1:5865164/1‑36 (MQ=255)
               aaGTTGCCTTACGATTTTTGGGTAATGACTCCAACt                     >  1:6813497/1‑36 (MQ=255)
                aGTTGCCTTACGATTTTTGGGTAATGACTCCAACtt                    <  1:441515/36‑1 (MQ=255)
                 tttcagattttgaacttgGGTAATGACTCCAACTTa                   <  1:6943406‑M1/18‑1 (MQ=255)
                 gTTGCCTTACGATTTTTGGGTAATGACTCCAACTTa                   <  1:3673721/36‑1 (MQ=255)
                  ttcagattttgaacttgGGTAATGACTCCAACTTAt                  <  1:7195800‑M1/19‑1 (MQ=255)
                  ttGCCTTACGATTTTTGGGTAATGACTCCAACTTAt                  >  1:1558629/1‑36 (MQ=255)
                   tGCCTTACGATTTTTGTGTAATGACTCCAACTTAtt                 <  1:1915214/36‑1 (MQ=255)
                   tGCCTTACGATTTTTGGGTAATGACTCCAACTTAtt                 <  1:3214917/36‑1 (MQ=255)
                   tGCCTTACGATTTTTGGGTAATGACTCCAACTTAtt                 <  1:1317911/36‑1 (MQ=255)
                   tGCCTTACGATTTTTGGGTAATGACTCCAACTTAtt                 <  1:2609261/36‑1 (MQ=255)
                    gCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                <  1:6455048/36‑1 (MQ=255)
                    gCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                >  1:2544201/1‑36 (MQ=255)
                    gCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                <  1:4385163/36‑1 (MQ=255)
                    cagattttgaacttgGGTAATGACTCCAACTTATTg                <  1:7557228‑M1/21‑1 (MQ=255)
                    cagattttgaacttgGGTAATGACTCCAACTTATTg                <  1:2483108‑M1/21‑1 (MQ=255)
                    cagattttgaacttgGGTAATGACTCCAACTTATTg                >  1:7791918‑M1/16‑36 (MQ=255)
                      cTTACGATTTTTGGGTAATGACTCCAACTTATTGAt              <  1:2001217/36‑1 (MQ=255)
                      cTTACGATTTTTGGGTAATGACTCCAACTTATTGAt              <  1:5445333/36‑1 (MQ=255)
                       attttgaacttgGGTAATGACTCCAACTTATTGATa             >  1:1372074‑M1/13‑36 (MQ=255)
                       attttgaacttgGGTAATGACTCCAACTTATTGATa             <  1:3803804‑M1/24‑1 (MQ=255)
                        tACGATTTTTGGGTAATGACTCCAACTTATTGATAg            >  1:1294577/1‑36 (MQ=255)
                        tACGATTTTTGGGTAATGACTCCAACTTATTGATAg            <  1:957729/36‑1 (MQ=255)
                        tACGATTTTTGGGTAATGACTCCAACTTATTGATAg            <  1:7132362/36‑1 (MQ=255)
                         tttgaacttgGGTAATGACTCCAACTTATTGATAgt           <  1:4080983‑M1/26‑1 (MQ=255)
                         tttgaacttgGGTAATGACTCCAACTTATTGATAgt           >  1:5443078‑M1/11‑36 (MQ=255)
                         aCGATTTTTGGGTAATGACTCCAACTTATTGATAgt           <  1:8324571/36‑1 (MQ=255)
                         aCGATTTTTGGGTAATGACTCCAACTTATTGATAgt           <  1:7430028/36‑1 (MQ=255)
                         aCGATTTTTGGGTAATGACTCCAACTTATTGATAgt           >  1:756630/1‑36 (MQ=255)
                         aCGATTTTTGGGTAATGACTCCAACTTATTGATAgt           <  1:1588424/36‑1 (MQ=255)
                          ttgaacttgGGTAATGACTCCAACTTATTGATAgtg          <  1:5664996‑M1/27‑1 (MQ=255)
                          ttgaacttgGGTAATGACTCCAACTTATTGATAgtg          >  1:6144544‑M1/10‑36 (MQ=255)
                          cGATTTTTGGGTAATGACTCCAACTTATTGATAgtg          <  1:2318425/36‑1 (MQ=255)
                           gATTTTTGGGTAATGACTCCAACTTATTGATAgtgt         >  1:27813/1‑36 (MQ=255)
                            aTTTTTGGGTAATGACTCCAACTTATTGATAGTGtt        <  1:5481980/36‑1 (MQ=40)
                             tttttGGTTAATGACTCCAACTTATTGATAGTGttt       <  1:425340/36‑1 (MQ=255)
                             tttttGGGTAATGACTCCAACTTATTGATAGTGttt       <  1:6289921/36‑1 (MQ=38)
                             tttttGGGTAATGACTCCAACTTATTGATAGTGttt       <  1:7487267/36‑1 (MQ=38)
                              ttttGGGTAATGACTCCAACTTATTGATAGTGtttt      <  1:6718626/36‑1 (MQ=35)
                              acttgGGTAATGACTCCAACTTATTGATAGTGtttt      <  1:7729887‑M1/31‑1 (MQ=255)
                               tttGGGTAATGACTCCAACTTATTGATAGTGTTTTa     <  1:1424632/36‑1 (MQ=32)
                               tttGGGTAATGACTCCAACTTATTGATAGTGTTTTa     >  1:1803981/1‑36 (MQ=32)
                               tttGGGTAATGACTCCAACTTATTGATAGTGTTTTa     <  1:2742794/36‑1 (MQ=32)
                               cttgGGTAATGACTCCAACTTATTGATAGTGTTTTa     >  1:3816368‑M1/5‑36 (MQ=255)
                                ttgGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:7712867‑M1/33‑1 (MQ=255)
                                ttgGGTAATGACTCCAACTTATTGATAGTGTTTTAt    <  1:960804‑M1/33‑1 (MQ=255)
                                ttgGGTAATGACTCCAACTTATTGATAGTGTTTTAt    >  1:4335303‑M1/4‑36 (MQ=255)
                                 tgGGTAATGACTCCAACTTATTGATAGTGTTTTat  <  1:7140227‑M1/34‑2 (MQ=255)
                                 tgGGTAATGACTCCAACTTATTGATAGTGTTTTATg   >  1:4554451‑M1/3‑36 (MQ=255)
                                 tgGGTAATGACTCCAACTTATTGATAGTGTTTTATg   <  1:4180347‑M1/34‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:1084969‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:1152670‑M1/2‑36 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:1405704‑M1/2‑36 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:2287307‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:2622962‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:7919439‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:3056043‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:3894618‑M1/2‑36 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:5003498‑M1/2‑36 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:5032085‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:5193927‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:6234943‑M1/35‑1 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  >  1:6825533‑M1/2‑36 (MQ=255)
                                  gGGTAATGACTCCAACTTATTGATAGTGTTTTATGt  <  1:7083989‑M1/35‑1 (MQ=255)
                                   |                                  
CATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  >  REL606/2822152‑2822221

Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG