Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 100% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)41 (1.000) 28/64 NT 100% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 0 (0.040)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =0 (0.000)55 (1.340) 33/64 NT 100% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 105 total aligned reads displayed.

CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3651056‑3651125
                                   |                                  
tgtgccttaatggagcattttctttctggcgaccat                                    <  1:192310‑M2/1‑1 (MQ=255)
tgtgccttaatggagcattttctttctggcgaccat                                    <  1:12209‑M2/1‑1 (MQ=255)
tgtgccttaatggagcattttctttctggcgaccat                                    <  1:25451‑M2/1‑1 (MQ=255)
 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                   >  1:3692997/1‑36 (MQ=255)
   tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTa                                 >  1:1179275/1‑36 (MQ=255)
   tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTa                                 <  1:5013628/36‑1 (MQ=255)
   gccttaatggagcattttctttctggcgaccaTGTa                                 >  1:4097900‑M2/33‑36 (MQ=255)
   gccttaatggagcattttctttctggcgaccaTGTa                                 >  1:4808562‑M2/33‑36 (MQ=255)
   gccttaatggagcattttctttctggcgaccaTGTa                                 >  1:719027‑M2/33‑36 (MQ=255)
   gccttaatggagcattttctttctggcgaccaTGTa                                 <  1:4860952‑M2/4‑1 (MQ=255)
    ccttaatggagcattttctttctggcgaccaTGTAc                                <  1:1325722‑M2/5‑1 (MQ=255)
     cttaatggagcattttctttctggcgaccaTGTACt                               <  1:4931497‑M2/6‑1 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                               >  1:1710357/1‑36 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                               <  1:552235/36‑1 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                               >  1:3071570/1‑36 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                               <  1:4307092/36‑1 (MQ=255)
      ttaatggagcattttctttctggcgaccaTGTACTg                              >  1:3253547‑M2/30‑36 (MQ=255)
      ttaatggagcattttctttctggcgaccaTGTACTg                              >  1:4309354‑M2/30‑36 (MQ=255)
      ttaatggagcattttctttctggcgaccaTGTACTg                              >  1:1834347‑M2/30‑36 (MQ=255)
      cAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTg                              <  1:1664016/36‑1 (MQ=255)
       taatggcgcattttctttctggcgaccaTGTACTGc                             <  1:1695707‑M2/8‑1 (MQ=255)
       aGCCTCCTGTGTTGATTTCCACCGAGTATGTACTGc                             <  1:5112772/36‑1 (MQ=255)
       aGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGc                             >  1:3932142/1‑36 (MQ=255)
        aatggagcattttctttctggcgaccaTGTACTGCa                            >  1:1893187‑M2/28‑36 (MQ=255)
         atggagcattttctttctggcgaccaTGTACTGCAc                           <  1:3864065‑M2/10‑1 (MQ=255)
          tggagcattttctttctggcgaccaTGTACTGCAcc                          <  1:1264974‑M2/11‑1 (MQ=255)
          tggagcattttctttctggcgaccaTGTACTGCAcc                          <  1:4586627‑M2/11‑1 (MQ=255)
          tggagcattttctttctggcgaccaTGTACTGCAcc                          <  1:403302‑M2/11‑1 (MQ=255)
          ctactGCGTTGATTTCCAACGAGTATGTACTGCAcc                          <  1:4239520/33‑1 (MQ=38)
           tcctGTGTTGATTTCCAACGAGTATGTACTGCAccc                         <  1:172300/36‑1 (MQ=255)
           tcctGTGTTGATTTCCAACGAGTATGTACTGCAccc                         <  1:2835784/36‑1 (MQ=255)
           tactGGGNNNATTGCCAACGAGTATGTACTGCAccc                         <  1:2005524/34‑1 (MQ=25)
           ggagcattttctttctggcgaccaTGTACTGCAccc                         >  1:4995754‑M2/25‑36 (MQ=255)
            cctGTGTTGATTTCCAAAGAGTATGTACTGCACCCa                        >  1:3013180/1‑36 (MQ=255)
             agcattttctttctggcgaccaTGTACTGCACCCAt                       <  1:3684199‑M2/14‑1 (MQ=255)
             agcattttctttctggcgaccaTGTACTGCACCCAt                       <  1:2448874‑M2/14‑1 (MQ=255)
              tgtgTTGATTTCCAACGAGTATGTACTGCACCCAtt                      >  1:5735056/1‑36 (MQ=255)
              gcattttctttctggcgaccaTGTACTGCACCCAtt                      <  1:2818787‑M2/15‑1 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                     <  1:5775114/36‑1 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                     >  1:1869723/1‑36 (MQ=255)
               cattttctttctggcgaccaTGTACTGCACCCAttt                     <  1:1702492‑M2/16‑1 (MQ=255)
                tgtTGATTTCCAACGAGTATGTACTGCACCCAtttt                    <  1:1587601/36‑1 (MQ=255)
                tgtTGATTTCCAACGAGTATGTACTGCACCCAtttt                    >  1:2661984/1‑36 (MQ=255)
                 ttttctttctggcgaccaTGTACTGCACCCATTttg                   <  1:2812768‑M2/18‑1 (MQ=255)
                 ttttctttctggcgaccaTGTACTGCACCCATTttg                   >  1:1779516‑M2/19‑36 (MQ=255)
                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                   >  1:3090560/1‑36 (MQ=255)
                  tttctttctggcgaccaTGTACTGCACCCATTttgt                  <  1:1219955‑M2/19‑1 (MQ=255)
                  tttctttctggcgaccaTGTACTGCACCCATTttgt                  <  1:1736325‑M2/19‑1 (MQ=255)
                  tttctttctggcgaccaTGTACGGCACCCATTttgt                  <  1:4717525‑M2/19‑1 (MQ=255)
                   ttctttctggcgaccaTGTACTGCACCCATTttgtt                 <  1:2581843‑M2/20‑1 (MQ=255)
                   ttctttctggcgaccaTGTACTGCACCCATTttgtt                 <  1:5333950‑M2/20‑1 (MQ=255)
                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt                 <  1:4777115/36‑1 (MQ=255)
                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt                 <  1:687082/36‑1 (MQ=255)
                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt                 >  1:629436/1‑36 (MQ=255)
                    tctttctggctaccaTGTACTGCACCCATTttgttg                <  1:4975862‑M2/21‑1 (MQ=255)
                    tctttctggcgaccaTGTACTGCACCCATTttgttg                <  1:824119‑M2/21‑1 (MQ=255)
                    tctttctggcgaccaTGTACTGCACCCATTttgttg                <  1:1973363‑M2/21‑1 (MQ=255)
                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg                >  1:3724043/1‑36 (MQ=255)
                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg                >  1:3785533/1‑36 (MQ=255)
                    gATTTCCAACGAGTATGTACTGCACCCATTttgttg                >  1:1645984/1‑36 (MQ=255)
                     ctttctggcgaccaTGTACTGCACCCATTTTGTTgg               >  1:1299822‑M2/15‑36 (MQ=255)
                      tttctgtcgaccaTGTACTGCACCCATTTTGTTGGa              <  1:1483315‑M2/23‑1 (MQ=255)
                      tttctggcgaccaTGTACTGCACCCATTTTGTTGGa              >  1:2458162‑M2/14‑36 (MQ=255)
                      tttCCAACGAGTATGTACTGCACCCATTTTGTTGGa              <  1:2480756/36‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc             <  1:5322695‑M2/24‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc             <  1:5926677‑M2/24‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc             <  1:1554556‑M2/24‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc             <  1:3233891‑M2/24‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc             <  1:2824893‑M2/24‑1 (MQ=255)
                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc             <  1:2237007/36‑1 (MQ=255)
                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc             >  1:2459985/1‑36 (MQ=255)
                        tctggcgaccaTGTACTGCACCCATTTTGTTGGACg            <  1:4746049‑M2/25‑1 (MQ=255)
                        tCCAACGAGTATGTACTGCACCCATTTTGTTGGACg            >  1:5356029/1‑36 (MQ=255)
                         ccAACGAGTATGTACTGCACCCATTTTGTTGGACGa           >  1:1539968/1‑36 (MQ=255)
                          tggcgaccaTGTACTGCACCCATTTTGTTGGACGAt          <  1:3432307‑M2/27‑1 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt          >  1:1823230/1‑36 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt          >  1:2671754/1‑36 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt          <  1:3501060/36‑1 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt          >  1:4266098/1‑36 (MQ=255)
                           ggcgaccaTGTACTGCACCCATTTTGTTGGACGATg         >  1:4340277‑M2/9‑36 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg         <  1:1361809/36‑1 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg         >  1:5904798/1‑36 (MQ=255)
                            gcgaccaTGTACTGCACCCATTTTGTTGGACGATGa        <  1:3830261‑M2/29‑1 (MQ=255)
                            aCGAGTATGTACTGCACCCATTTTGTTGGACGATGa        <  1:4556210/36‑1 (MQ=255)
                             cgaccaTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:4898083‑M2/30‑1 (MQ=255)
                             cgaccaTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:5511555‑M2/30‑1 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa       >  1:3271794/1‑36 (MQ=255)
                              gaccaTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:2046263‑M2/6‑36 (MQ=255)
                               accaTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:1984244‑M2/5‑36 (MQ=255)
                               accaTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:1957766‑M2/5‑36 (MQ=255)
                               accaTGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:569662‑M2/32‑1 (MQ=255)
                               aGTATGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:670560/36‑1 (MQ=40)
                                ccaTGTACTGCACCCATTTTGTTGGACGATGAAATg    <  1:937589‑M2/33‑1 (MQ=255)
                                 tATGTACTGCACCCATTTTGTTGGACGATGAAATgg   <  1:600680/36‑1 (MQ=35)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:4309266‑M2/3‑36 (MQ=255)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:3407446‑M2/3‑36 (MQ=255)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:3144009‑M2/3‑36 (MQ=255)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:1475053‑M2/3‑36 (MQ=255)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:1124715‑M2/3‑36 (MQ=255)
                                  aTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:3890898‑M2/35‑1 (MQ=255)
                                   |                                  
CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3651056‑3651125

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG