Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,760,3690C→A11.2% 1.8 ‑13.9 0.090408ygbNpredicted transporter
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/15):  ref base (50/25):  total (50/40)
Fisher's exact test strand distribution p-value = 8.78e-07
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

Only 100 of 103 total aligned reads displayed.

CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGC  >  REL606/2760334‑2760404
                                   |                                   
cTTGCGCCAATCATTTACGGTTTTGCCAAGTTTGcc                                     >  1:74622/1‑36 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc                                     <  1:8099447/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc                                     <  1:5813975/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc                                     <  1:5797464/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc                                     >  1:4729775/1‑36 (MQ=255)
 ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa                                    <  1:1054058/36‑1 (MQ=255)
 ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa                                    <  1:4104526/36‑1 (MQ=255)
 ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa                                    <  1:294994/36‑1 (MQ=255)
  tGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCaa                                   >  1:8299514/1‑36 (MQ=255)
   gcgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaa                                  >  1:7433572/1‑36 (MQ=255)
   gcgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaa                                  <  1:4511130/36‑1 (MQ=255)
    cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa                                 >  1:3428200/1‑36 (MQ=255)
    cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa                                 >  1:4854322/1‑36 (MQ=255)
    cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa                                 >  1:807918/1‑36 (MQ=255)
     gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat                                >  1:4881050/1‑36 (MQ=255)
     gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat                                >  1:7502521/1‑36 (MQ=255)
     gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat                                <  1:1409475/36‑1 (MQ=255)
      ccAATCATTTACGGTTTTGCCAAGGTTGCCAAAata                               >  1:1728965/1‑36 (MQ=255)
      ccAATCATTTACGGTTTTGCCAAGGTTGCCAAAata                               >  1:5579595/1‑36 (MQ=255)
       cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat                              >  1:1736270/1‑36 (MQ=255)
       cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat                              >  1:1547699/1‑36 (MQ=255)
       cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat                              <  1:7902399/36‑1 (MQ=255)
       cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat                              <  1:5183401/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc                             <  1:4051914/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc                             <  1:7320528/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc                             <  1:1271587/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAACGTTTCCAAAATATc                             >  1:7168082/1‑36 (MQ=37)
         aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg                            <  1:2642732/36‑1 (MQ=255)
         aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg                            <  1:2242640/36‑1 (MQ=255)
         aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg                            <  1:2844809/36‑1 (MQ=255)
           cATTTACGGTTTTGCCAAGGTTGCCAAAATATCGcc                          >  1:1888036/1‑36 (MQ=255)
            aTTTACGGTTTTGCCAAGGTTGCCAAAATATCTCCa                         >  1:1657974/1‑36 (MQ=255)
            aTTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCa                         >  1:7495739/1‑36 (MQ=255)
            aTTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCa                         <  1:1893276/36‑1 (MQ=255)
            aTTTACGGGTTTGCCAAGGTTGCCAAAATATCGCCa                         >  1:1248392/1‑36 (MQ=255)
              ttACGGTTTTGCCAAGGTTGCCAAAATATCGCCACt                       >  1:3216949/1‑36 (MQ=255)
              ttACGGTTTTGCAAAGGTTGCAAAAATATCGCCACt                       <  1:4761924/36‑1 (MQ=37)
               tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc                      >  1:1458219/1‑36 (MQ=255)
               tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc                      <  1:1515685/36‑1 (MQ=255)
               tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc                      <  1:366523/36‑1 (MQ=255)
                aCGTTTTTGCCAAGGTTGCAAAAATATCGCCACTCa                     <  1:947702/36‑1 (MQ=37)
                aCGGTTTTGCCAAGGTTGCAAAAATATCGCCACTCa                     <  1:2820911/36‑1 (MQ=255)
                aCGGTTTTGCAAAGGTTGCCAAAATATCGCCACTCa                     <  1:3739620/36‑1 (MQ=255)
                 cGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCaa                    >  1:7208678/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa                   >  1:3743943/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa                   >  1:7921077/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa                   >  1:4861690/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa                   >  1:7749740/1‑36 (MQ=255)
                  ggTTTTGCAAAGGTTGCAAAAATATCGCCACTCaaa                   <  1:5537228/36‑1 (MQ=37)
                  ggTTTTGCAAAGGTTCCAAAAATATCGCCACTCaaa                   <  1:4536344/36‑1 (MQ=25)
                  ggTTTTGAAAAGGTTGCCAAAATATCGCCACTCaaa                   <  1:6093505/36‑1 (MQ=37)
                  gatttgGCCAATTTTCCCAAAATATCGCCACTCaaa                   <  1:6871392/34‑1 (MQ=16)
                   gTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAAt                  >  1:7524327/1‑36 (MQ=255)
                   gTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAAt                  >  1:5516206/1‑36 (MQ=255)
                   gTTTTGCCAAGGTTGCAAAAATATCGCCACTCAAAt                  <  1:424536/36‑1 (MQ=255)
                   gTTTTGCAAAGGTTGCAAAAATATCGCCACTCAAAt                  <  1:3040973/36‑1 (MQ=37)
                     tttGCCAAGGTTGCCAAAATATCGCCACTCAAAttt                <  1:2266356/36‑1 (MQ=255)
                     tttGCCAAGGTTGCCAAAATATCGCCACTCAAAttt                >  1:2506925/1‑36 (MQ=255)
                      ttGCCAAGGTTGCCAAAATATCGCCACTTAAATTTg               >  1:6529959/1‑36 (MQ=255)
                      ttGCAAAGGTTGCAAAAATATCGCCACTCAAATTTg               <  1:5681753/36‑1 (MQ=37)
                       tGCCAAGGTTGCCAAAATATCGCCACTCAAATTTgg              >  1:6195267/1‑36 (MQ=255)
                       tGCCAAGGTTGCCAAAATATCGCCACTCAAATTTgg              <  1:4195504/36‑1 (MQ=255)
                       tGCCAAGGTTGCCAAAATATCACCACTAAAATTTgg              >  1:4625594/1‑36 (MQ=37)
                        gcaaaGGTTGCAAAAATATCGCCACTCAAATTTGgc             <  1:5312174/33‑1 (MQ=37)
                        gCCAAGGTTGCCAAAATATCGCCACTCAAATTTGgc             >  1:936440/1‑36 (MQ=255)
                        gCCAAGGTTGCCAAAATATCGCCACTCAAATTTGgc             >  1:2817070/1‑36 (MQ=255)
                        gCCAAGGTTGCAAAAATATCGCCACTCAAATTTGgc             <  1:2824527/36‑1 (MQ=255)
                        gCCAAGGTTGCAAAAATATCGCCACTCAAATTTGgc             <  1:2313851/36‑1 (MQ=255)
                         ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc            >  1:1991023/1‑36 (MQ=255)
                         ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc            >  1:4471711/1‑36 (MQ=255)
                         ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc            >  1:4122579/1‑36 (MQ=255)
                         ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc            >  1:4298138/1‑36 (MQ=255)
                         ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc            >  1:5580366/1‑36 (MQ=255)
                          cAAGGTTGCCAAAATATCGCCACTCAAATTTGgcct           <  1:1490357/36‑1 (MQ=255)
                          cAAGGTTGCCAAAATATCGCCACTCAAATTTGgcct           >  1:3072006/1‑36 (MQ=255)
                          cAAGGTTGCCAAAATATCGCCACTCAAATTTGgccc           >  1:4103849/1‑35 (MQ=255)
                          cAAGGTTGCAAAAATATCGCCACTCAAATTTGgcct           <  1:8153951/36‑1 (MQ=255)
                          aaaGGTTGAAAAAATATCGCCACTCAAATTTGgcct           <  1:1507817/35‑1 (MQ=25)
                           aaGGTTGCCAAAATATCGCCACTCAAATTTGgcctg          >  1:7159683/1‑36 (MQ=255)
                           aaGGTTGCCAAAATATCGCCACTCAAATTTGgcctg          >  1:3569640/1‑36 (MQ=255)
                           aaGGTTGCCAAAATATCGCCACTCAAATTTGgcatg          >  1:2014163/1‑36 (MQ=255)
                            aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc         >  1:2715990/1‑36 (MQ=255)
                            aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc         >  1:7992731/1‑36 (MQ=255)
                            aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc         <  1:6168939/36‑1 (MQ=255)
                            aGGTTGCAAAAATATCGCCACTCAAATTTGgcctgc         <  1:5470626/36‑1 (MQ=255)
                             ggTTGCCAAAATATCGCCACTCAAATTTGgcctgcc        >  1:2797915/1‑36 (MQ=255)
                              tttGCAAAAATATCGCCACTCAAATTTGgcctgcct       <  1:4501736/35‑1 (MQ=255)
                               ttGCCAAAATATCGCCACTCAAATTTGGcctgcctg      >  1:2394549/1‑36 (MQ=255)
                               ttGCCAAAATATCGCCACTCAAATTTGGcctgcctg      >  1:2079813/1‑36 (MQ=255)
                                 gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc    >  1:7681728/1‑36 (MQ=255)
                                 gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc    >  1:2208697/1‑36 (MQ=255)
                                 gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc    >  1:8027406/1‑36 (MQ=255)
                                 gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc    >  1:5904112/1‑36 (MQ=255)
                                  ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg   >  1:4807383/1‑36 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  >  1:7799228/1‑36 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  >  1:4212873/1‑36 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  >  1:2164024/1‑36 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  <  1:8278035/36‑1 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  <  1:7171187/36‑1 (MQ=255)
                                   cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc  >  1:6103760/1‑36 (MQ=255)
                                   |                                   
CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGC  >  REL606/2760334‑2760404

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG