Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,513,999 | +T | 5.4% | coding (2743/3741 nt) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,513,999 | 1 | .→T | 5.4% | 2.7 ‑1.8 ‑0.0 | 37 | coding (2743/3741 nt) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
Reads supporting (aligned to +/- strand): new base (0/2): ref base (22/13): total (22/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.58e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.97e-01 |
GAAATCGATTTCATCCTGGGTATTCCACGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATCAATGGCC > REL606/1513964‑1514034
|
gAAATCGATTTCATCCTGGGTATTCCACGAAATccc < 1:410939/36‑1 (MQ=255)
gAAATCGATTTCATCCTGGGTATTCCACGAAATccc < 1:3537561/36‑1 (MQ=255)
gAAATCGATTTCATCCTGGGGATTCCACGAAATccc > 1:244641/1‑36 (MQ=255)
gAAATCGATTTCATCATGGGTATTCCACGAAATccc > 1:2653122/1‑36 (MQ=255)
aaaTCGATTTCATCCTGGGTATTCCACGAAATCCC.t < 1:6561766/36‑1 (MQ=255)
aaaTCGATTTCATCCTGGGTATTCCACGAAATCCC.t < 1:2778448/36‑1 (MQ=255)
aaTCGATTTCATCCTGGGTATTCCACGAAATCCC.tt > 1:249437/1‑36 (MQ=255)
aTCGATTTCATCCTGGGTATTCCACGAAATCCC.ttt < 1:6303002/36‑1 (MQ=255)
aTCGATTTCATCCTGGGTATTCCACGAAATCCC.ttt < 1:7496869/36‑1 (MQ=255)
aTCGATTTCATCCTGGGTATTCCACGAAATCCC.ttt < 1:4689320/36‑1 (MQ=255)
aTCGATTTCATCCTGGGTATTCCACGAAATCCC.ttt > 1:7902204/1‑36 (MQ=255)
tCGATTTCATCCTGGGTATTCCACGAAATCCC.TTT.a > 1:4782529/1‑36 (MQ=255)
tCGATTTCATCCTGGGTATTCCACGAAATCCC.TTT.a < 1:2927691/36‑1 (MQ=255)
gATTTCATCCTGGGTATTCCACGAAATCCC.TTT.Acc < 1:5889843/36‑1 (MQ=255)
gATTTCATCCTGGGTATTCCACGAAATCCC.TTT.Acc > 1:3967981/1‑36 (MQ=255)
gATTTCATCCTGGGTATTCCACGAAATACC.TTT.Acc > 1:5742603/1‑36 (MQ=255)
aTTTCATCCTGGGTATTCCACGAAATCCC.TTT.ACCg < 1:2336942/36‑1 (MQ=255)
aTTTCATCCTGGGTATTCCACGAAATCCC.TTT.ACCg < 1:5927106/36‑1 (MQ=255)
ttCATCCTGGGTATTCCACGAAATCCC.TTT.ACCGcc > 1:3736079/1‑36 (MQ=255)
ttCATCCTGGGTATTCCACGAAATCCC.TTT.ACCGcc > 1:8034956/1‑36 (MQ=255)
cATCCTGGGTATTCCACGAAATCCC.TTT.ACCGCCAt > 1:3431670/1‑36 (MQ=255)
aaTCCTGGGCATTCCACGAAATCCC.TTT.ACCGCCAt > 1:4469303/2‑36 (MQ=255)
aTCCTGGGTATTCCACGAAATCCC.TTT.ACCGCCAtt > 1:7999934/1‑36 (MQ=255)
aTCCTGGGTATTCCACGAAATCCC.TTT.ACCGCCAtt > 1:8252022/1‑36 (MQ=255)
cgtGGTTATCCAACGAGATCCC.TTT.ACCGCCATTGc < 1:1769769/34‑1 (MQ=16)
cgggggTATCCCACAAAATCCT.TTT.CCCGCCATTGc < 1:111469/33‑1 (MQ=16)
ccTGGGTATTCCACGAAATCCC.TTT.ACCGCCATTGc > 1:7456556/1‑36 (MQ=255)
cTGGGTATTCCACGAAATCCC.TTT.ACCGCCATTGcc > 1:2334340/1‑36 (MQ=255)
cTGGGTATTCCACGAAATCCC.TTT.ACCGCCATTGcc > 1:6282445/1‑36 (MQ=255)
ggttATTACACAAAACCTT.TTG.ACCGCCATTGCCaa < 1:2979680/33‑1 (MQ=0)
gggTATTCCACGAAATCCC.TTT.ATCGCCTTTGCCaa > 1:5647734/1‑36 (MQ=37)
gggTATTCCAAAAACCCCT.TTT.CCCGCCATTGCCaa < 1:3594701/36‑1 (MQ=9)
gggTATCCCACAAAACCCT.TTT.ACCGCCATTGCCaa < 1:4214684/36‑1 (MQ=19)
ggTTTTCCAAAAAATCCCTTTT.ACCGCCATTGCCaa < 1:5760674/36‑1 (MQ=9)
tATTCCACGAAATCCC.TTT.ACCGCCATTGCCAAGtt > 1:907274/1‑36 (MQ=255)
tATTCCACGAAATCCC.TTT.ACCGCCATTGCCAAGtt > 1:7530732/1‑36 (MQ=255)
tATTCCACGAAATCCC.TTT.ACCGCCATTGCCAAGtt > 1:3519850/1‑36 (MQ=255)
ccACGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTc > 1:4450835/1‑36 (MQ=255)
ccACGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTc > 1:7719911/1‑36 (MQ=255)
caaaaTCCT.TTT.ACCGCCATTGCCAAGTTTGTCCAt < 1:7412645/34‑1 (MQ=37)
cGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTCCAt > 1:3845411/1‑36 (MQ=255)
cGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTCCAt > 1:7971697/1‑36 (MQ=255)
aaaaaTCCCTTTT.CCCGCCATTGCCAAGTTTGTCCa < 1:5989076/34‑1 (MQ=21)
gAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATc > 1:7845702/1‑36 (MQ=255)
caaaACCC.TTTAACCGCCATTGCCAAGTTTGTCCAt < 1:760909/35‑1 (MQ=25)
aaaCCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATCa < 1:7033001/36‑1 (MQ=255)
aaaCCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATCa < 1:6853634/36‑1 (MQ=255)
accccc.TTT.CCCGCCATTGCCAAGTTTGTCCATCaa < 1:4953478/33‑1 (MQ=37)
aTCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATCAAt > 1:2270246/1‑36 (MQ=255)
ccc.TTTAACCGCCATTGCCAAGTTTGTCCATCAATg < 1:7959743/36‑1 (MQ=37)
ccc.TTC.CCCGCCATTGCCAAGTTTGTCCATCAATgg < 1:2062710/36‑1 (MQ=37)
cc.TTT.ACCGCCATTGCCAAGTTTGTCCATCAATGGc > 1:7310014/1‑36 (MQ=255)
c.TTT.ACCGCCATTGCCAAGTTTGTCCATCAATGGcc > 1:4977858/1‑36 (MQ=255)
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GAAATCGATTTCATCCTGGGTATTCCACGAAATCCC.TTT.ACCGCCATTGCCAAGTTTGTCCATCAATGGCC > REL606/1513964‑1514034
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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