Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546958–547700 | 555923–555877 | 8178–8966 | 17 [14] | [0] 105 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 0 (0.000) | 60 (1.120) | 39/62 | NT | 100% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
AACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTAT > REL606/546922‑546964
|
aaccgaaaccgGTAATGACTCCAACTTATTGATAgt > 1:7634152/1‑36 (MQ=255)
aaccgaaaccgGTAATGACTCCAACTTATTGATAgt > 1:664198/1‑36 (MQ=255)
aaccgaaaccgGTAATGACTCCAACTTATTGATAgt < 1:434863/36‑1 (MQ=255)
accgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:2561834/1‑36 (MQ=255)
accgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:519439/1‑36 (MQ=255)
accgaaaccgGTAATGACTCCAACTTATTGATAgtg > 1:4987187/1‑36 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTATTGATAgtgt < 1:7481087/36‑1 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTATTGATAgtgt > 1:703825/1‑36 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTATTGATAgtgt < 1:4759259/36‑1 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTATTGATAgtgt > 1:3320376/1‑36 (MQ=255)
cgaaaccgGTAATGACTCCAACTTATTGATAGTGtt > 1:4039427/1‑36 (MQ=255)
gaaaccgGTAATGACTCCAACTTATTTATAGTGttt < 1:4163483/36‑1 (MQ=255)
gaaaccgGTAATGACTCCAACTTATTGATAGTGttt > 1:4599076/1‑36 (MQ=40)
aaaccgGTAATGACTCCAACTTATTGATAGTGtttt > 1:6215541/1‑36 (MQ=38)
aaccgGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:1715076/36‑1 (MQ=35)
accgGTAATGACTCCAACTTATTGATAGTGTTTTAt > 1:3742713/1‑36 (MQ=32)
accgGTAATGACTCCAACTTATTGATAGTGTTTTAt < 1:7050237/36‑1 (MQ=32)
|
AACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTAT > REL606/546922‑546964
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 35 ≤
ATCG
< 37 ≤
ATCG
|