Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,768,203 | 0 | G→T | 13.4% | 13.7 ‑13.7 ‑0.0 | 104 | intergenic (‑5/+45) | ygbE/cysC | conserved inner membrane protein/adenylylsulfate kinase |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (15/0): ref base (31/58): total (46/58) | ||||||||||
Fisher's exact test strand distribution p-value = 1.07e-06 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.71e-01 |
Only 100 of 108 total aligned reads displayed.
TTGTTAGTGTAATGTTATGGCTATTACGCATATTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCC > REL606/2768168‑2768238
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ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg < 1:2510445/36‑1 (MQ=255)
ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg < 1:483033/36‑1 (MQ=255)
ttGTTAGTGTAATGTTATGGCTATTACGCATATTTg < 1:1626030/36‑1 (MQ=255)
tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa < 1:2316161/36‑1 (MQ=255)
tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa < 1:8116212/36‑1 (MQ=255)
tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa < 1:8209118/36‑1 (MQ=255)
tGTTAGTGTAATGTTATGGCTATTACGCATATTTGa < 1:4193095/36‑1 (MQ=255)
gTTAGTGTAATGTTATGGCTATTACGCATATTTGAt < 1:2774861/36‑1 (MQ=255)
ttAGTGTAATGTTATGGCTATTATGCATATTTTAtt > 1:3051282/1‑35 (MQ=37)
ttAGTGTAATGTTATGGCTATTACTCATATTTTATc > 1:6084726/1‑36 (MQ=37)
ttAGTGTAATGTTATGGCTATTACGCATATTTTATc > 1:623180/1‑36 (MQ=255)
ttAGTGTAATGTTATGGCTATTACGCATATTTGATc < 1:1424882/36‑1 (MQ=255)
ttAGTGTAATGTTATGGCTATTAAGCATATTTGAtt > 1:1625111/1‑35 (MQ=255)
tAGTGTAATGTTATGGCTGTTACCCATATTTGATcc < 1:6832377/36‑1 (MQ=38)
tAGTGTAATGTTATGGCTATTACGCATATTTGATcc < 1:3219645/36‑1 (MQ=255)
aGTGTAATGTTATGGCTATTACGCCTATTTTATTCt > 1:4931248/1‑36 (MQ=25)
aGTGTAATGTTATGGCTATTACGCATATTTTATCCt > 1:824195/1‑36 (MQ=255)
aGTGTAATGTTATGGCTATTACGCATATTTGATCCt < 1:1322561/36‑1 (MQ=255)
aGTGTAATGTTATGGCTATTACGCATATTTGATCCt > 1:6997600/1‑36 (MQ=255)
aGTGTAATGTTATGGCTATTACGCATATTTGATCCt < 1:1419566/36‑1 (MQ=255)
aGTGTAATGTTATGGCTATTACGCATATTTGATCCt < 1:6548752/36‑1 (MQ=255)
gtgtAATGTTATGGCTATTACTCATATTTTATCCtt > 1:1868286/1‑35 (MQ=37)
gtgtAATGTTATGGCTATTACGCATATTTTATTCTg > 1:5554388/1‑36 (MQ=37)
gtgtAATGTTATGGCTATTACGCATATTTTATCCtt > 1:5944808/1‑35 (MQ=255)
gtgtAATGTTATGGCTATTACGCATATTTTATCCtt > 1:2198993/1‑35 (MQ=255)
gtgtAATGTTATGGCTATTACGCATATTTGATCCTg < 1:2999745/36‑1 (MQ=255)
gtgtAATGTTATGGCTATTACGCATATTTGATCCTg < 1:5769527/36‑1 (MQ=255)
gtgtAATGTTATGGCTATTACGCATATTTGATCCTg < 1:1145769/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:5607329/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:8317880/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:5652667/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:1327721/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:6131813/36‑1 (MQ=255)
tgtAATGTTATGGCTATTACGCATATTTGATCCTGt < 1:4150915/36‑1 (MQ=255)
gtAATGTTATGGCTATTACGCATATTTGATCCTGtt < 1:2344554/36‑1 (MQ=255)
gtAATGTTATGGCTATTACGCATATTTGATCCTGtt < 1:6898821/36‑1 (MQ=255)
gtAATATTATGGCTATTACGCATATTTGATCCTGtt < 1:6468799/36‑1 (MQ=255)
tAATGTTATGGCTATTACGCATATTTTATCCTTTTa > 1:8450223/1‑36 (MQ=37)
tAATGTTATGGCTATTACGCATATTTTATCCTGttt > 1:3503819/1‑35 (MQ=255)
tAATGTTATGGCTATTACGCATATTTGATCCTGTTa < 1:3386648/36‑1 (MQ=255)
tAATGTTATGGCTATTACGCATATTTGATCCTGTTa < 1:7860891/36‑1 (MQ=255)
aaTTTTATGACTATTCCGCATATTTGATCCTGTTAc < 1:6161714/36‑1 (MQ=25)
aaTGTTATGGCTATTACGCATATTTGATCCTGTTAc < 1:8341537/36‑1 (MQ=255)
aaTGTTATGGCTATTACGCATATTTGATCCTGTTAc < 1:1018004/36‑1 (MQ=255)
tGTTATGGCTATTACGCATATTTTATCCTTTTACtt > 1:3175869/1‑36 (MQ=37)
tGTTATGGCTATTACGCATATTTGATCCTGTTACtt < 1:746115/36‑1 (MQ=255)
tGTTATGGCTATTACGCATATTTGATCCTGTTACtt < 1:8238257/36‑1 (MQ=255)
gTTATGGCTATTACGCATATTTTTTCCTTTTAGttt > 1:364784/1‑36 (MQ=16)
gTTATGGCTATTACGCATATTTGATCCTGTTACttt < 1:8335235/36‑1 (MQ=255)
gTTATGGCTATTACGCATATTTGATCCTGTTACttt < 1:4095006/36‑1 (MQ=255)
ttATGGCTATTACGCATATTTTGTCCTTTTACtttt > 1:5933501/1‑35 (MQ=21)
ttATGGCTATTACGCATATTTGATCCTGTTACTTTg < 1:1984402/36‑1 (MQ=255)
aTGGCTATTACGCATATTTGATCCTTTTACTTTTAc > 1:8248867/1‑36 (MQ=38)
aTGGCTATTACGCATATTTGATCCTGTTACTTTGAc < 1:4047833/36‑1 (MQ=255)
tGGCTATTACGCATATTTGATCCTGTTACTTTGACg < 1:4815460/36‑1 (MQ=255)
tGGCTATTACGCATATTTGATCCTGTTAATTTGACg > 1:7366754/1‑36 (MQ=255)
gCTATTACGCATATTTGATCCTGTTACTTTGACGaa < 1:7037904/36‑1 (MQ=255)
gCTATTACGCATATTTGATCCTGTTACTTTGACGaa > 1:2284940/1‑36 (MQ=255)
gCTATTACGCATATTTGATCCTGTTACTTTGACGaa > 1:7087287/1‑36 (MQ=255)
gCTATTACGCATATTTGATCCTGTTACTTTGACGaa > 1:3415597/1‑36 (MQ=255)
cTATTACGCATATTTGATCCTGTTACTTTTACGAAc > 1:8063681/1‑36 (MQ=255)
tATTACGCATATTTGATCCTGTTACTTTGACGAAcc < 1:7680101/36‑1 (MQ=255)
tATTACGCATATTTGATCCTGTTACTTTGACGAAcc > 1:4676072/1‑36 (MQ=255)
aTTACGCATATTTGATCCTGTTACTTTGACGAACCg > 1:7897529/1‑36 (MQ=255)
aTTACGCATATTTGATCCTGTTACTTTGACGAACCg > 1:2690695/1‑36 (MQ=255)
aTTACGCATATTTGATCCTGTTACTTTGACGAACCg < 1:6705927/36‑1 (MQ=255)
aTTACGCATATTTGATCCTGTTACTTTGACGAACCg > 1:6808503/1‑36 (MQ=255)
ttACGCATATTTGATCCTGTTACTTTGACGAACCgg > 1:6609866/1‑36 (MQ=255)
tACGCATATTTGATCCTGTTACTTTGACGAACCggg > 1:6872837/1‑36 (MQ=255)
tACGCATATTTGATCCTGTTACTTTGACGAACCggg > 1:55453/1‑36 (MQ=255)
aCGCATATTTGATCCTGTTACTTTGACGAACCGGGc > 1:7917176/1‑36 (MQ=255)
aCGCATATTTGATCCTGTTACTTTGACGAACCGGGc > 1:1744162/1‑36 (MQ=255)
cGCATATTTGATCCTGTTACTTTGACGAACCGGGCa < 1:7613191/36‑1 (MQ=255)
gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt < 1:7821771/36‑1 (MQ=255)
gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt < 1:8083568/36‑1 (MQ=255)
gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt < 1:4419331/36‑1 (MQ=255)
gCATATTTGATCCTGTTACTTTGACGAACCGGGCAt > 1:2295190/1‑36 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg < 1:1134350/36‑1 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg < 1:4642029/36‑1 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg < 1:7548781/36‑1 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg > 1:4120242/1‑36 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg < 1:5237903/36‑1 (MQ=255)
cATATTTGATCCTGTTACTTTGACGAACCGGGCATg < 1:2059028/36‑1 (MQ=255)
atatTTGATCCTGTTNCTTTNANGAACCGGGCATgg < 1:2080068/36‑1 (MQ=39)
atatTTGATCCTGTTACTTTGACGAACCGGGCATgg > 1:7913001/1‑36 (MQ=255)
atatTTGATCCTGTTACTTTGACGAACCGGGCATgg > 1:5951958/1‑36 (MQ=255)
atatTTGATCCTGTTACTTTGACGAACCGGGCATgg < 1:152145/36‑1 (MQ=255)
atatTTGATCCTGTTACTTTGACGAACCGGGCATgg > 1:7664686/1‑36 (MQ=255)
tatTTGATCCTGTTACTTTGACGAACCGGGCATGGa > 1:3356527/1‑36 (MQ=255)
atTTGATCCTGTTACTTTGACGACCCGGGCATGGaa > 1:7904508/1‑36 (MQ=255)
atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa < 1:8447951/36‑1 (MQ=255)
atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa < 1:217221/36‑1 (MQ=255)
atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa > 1:7495660/1‑36 (MQ=255)
atTTGATCCTGTTACTTTGACGAACCGGGCATGGaa > 1:2623786/1‑36 (MQ=255)
tttGATCCTGTTACTTTGACGAACCGGGCATGGaaa > 1:5666597/1‑36 (MQ=255)
ttGATCCTGTTACTTTGACGAACCGGGCATGGAAAc < 1:356420/36‑1 (MQ=255)
ttGATCCTGTTACTTTGACGAACCGGGCATGGAAAc > 1:3511283/1‑36 (MQ=255)
tGATCCTGTTACTTTGACGAACCGGGCATGGAAAcc < 1:5986841/36‑1 (MQ=255)
tGATCCTGTTACTTTGACGAACCGGGCATGGAAAcc > 1:2064841/1‑36 (MQ=255)
gATCCTGTTACTTTGACGAACCGGGCATGGAAAccc < 1:3872872/36‑1 (MQ=255)
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TTGTTAGTGTAATGTTATGGCTATTACGCATATTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCC > REL606/2768168‑2768238
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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