Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,484,118 | G→T | 12.3% | D60Y (GAC→TAC) | ydcU → | predicted spermidine/putrescine transporter subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,484,118 | 0 | G→T | 12.3% | 3.2 ‑3.7 ‑0.0 | 46 | 178 | ydcU | predicted spermidine/putrescine transporter subunit |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (19/21): total (25/21) | ||||||||||
Fisher's exact test strand distribution p-value = 2.47e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.43e-01 |
GCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGAC > REL606/1484084‑1484152
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gctgACACTGTTATGGCAGGGATTTTATACTTTTGa < 1:110013/36‑1 (MQ=255)
ctgACACTGTTATGGCAGGGGTTTTTTACTTTTTAc > 1:199899/1‑36 (MQ=37)
ctgACACTGTTATGGCAGGGATTTTATACTTTTGAc < 1:6627710/36‑1 (MQ=255)
gACACTGTTATGGCAGGGATTTTATACTTTTGACGa < 1:1086991/36‑1 (MQ=255)
acacTGTTATGGCAGGGGTTTTATACTTTTTACGAt > 1:2348318/1‑36 (MQ=37)
acacTGTTATGGCAGGGATTTTATACTTTTGACGAt < 1:3491427/36‑1 (MQ=255)
cacTGTTATGGCAGGGGTTTTATACTTTTTACGAtt > 1:3351047/1‑36 (MQ=37)
cacTGTTATGGCAGGGATTTTTTACTTTTTTCGAtt > 1:1956057/1‑36 (MQ=25)
acTGTTATGGCAGGGGTTTTATACTTTTTTCGAttt > 1:1360836/1‑36 (MQ=25)
acTGTTATGGCAGGGATTTTATACTTTTGACGAttt < 1:2978917/36‑1 (MQ=255)
acTGTTATGGCAGGGATTTTATAATTTTGACGAttt < 1:1617913/36‑1 (MQ=255)
cTGTTATGGCAGGGATTTTATACTTTTGACGATTTc < 1:6393629/36‑1 (MQ=255)
ttATGGCAGGGATTTTATACTTTTTACGATTTCAcc > 1:1947021/1‑36 (MQ=255)
ttATGGCAGGGATTTTATACTTTTGACGATTTCAcc < 1:2486479/36‑1 (MQ=255)
tATGGCAGGGATTTTATACTTTTGACGATTTCACCa > 1:6250256/1‑36 (MQ=255)
aTGGCAGGGATTTTATACTATTGACGATTTCACCAt > 1:2647986/1‑36 (MQ=255)
tGGCAGGGATTTTATACTTTTGACGACTTCACCATg > 1:4579534/1‑36 (MQ=255)
ggCAGGGATTTTATACTTTTGACGATTTCACCATGt < 1:5641920/36‑1 (MQ=255)
ggCAGGGATTTTATACTTTTGACGATTTCACCATGt < 1:551381/36‑1 (MQ=255)
ggCAGGGATTTTATACTTTTGACGATTTCACCATGt < 1:86317/36‑1 (MQ=255)
gCAGGGATTTTATACTTTTGACGATTTCACCATGTc < 1:1356869/36‑1 (MQ=255)
gCAGGGATTTTATACTTTTGACGATTTCACCATGTc < 1:5036765/36‑1 (MQ=255)
aGGGATTTTATACTTTTGACGATTTCACCATGTCgg > 1:3655271/1‑36 (MQ=255)
aGGGATTTTATACTTTTGACGATTTCACCATGTCgg > 1:5408856/1‑36 (MQ=255)
gggATTTTATACTTTTGACGATTTCACCATGTCGGt > 1:4621789/1‑36 (MQ=255)
ggATTTTATACTTTTGACGATTTCACCATGTCGGTa < 1:1582724/36‑1 (MQ=255)
aTTTTATACTTTTGACGATTTCACCATGTCGGTAAc > 1:2431977/1‑36 (MQ=255)
ttttATACTTTTGACGATTTCACCATGTCGGTAAcc > 1:2787799/1‑35 (MQ=255)
ttttATACTTTTGACGATTTCACCATGTCGGTAACg > 1:4256532/1‑36 (MQ=255)
ttATACTTTTGACGATTTCACCATGTCGGTAACGcc < 1:1791180/36‑1 (MQ=255)
ttATACTTTTGACGATTTCACCATGTCGGTAACGcc > 1:4083610/1‑36 (MQ=255)
ttATACTTTTGACGATTTCACCATGTCGGTAACGcc < 1:234167/36‑1 (MQ=255)
tataCTTTTGACGATTTCACCATGTCGGTAACGCCg < 1:2902509/36‑1 (MQ=255)
ataCTTTTGACGATTTCACCATGCCGGTTACGCCgg > 1:5734115/1‑36 (MQ=37)
taCTTTTGACGATTTCACCATGTCGGTAACGCCGGa > 1:2142675/1‑36 (MQ=255)
aCTTTTGACGATTTCACCATGTCGGTAACGCCGGaa > 1:6046468/1‑36 (MQ=255)
aCTTTTGACGATTTCACCATGTCGGTAACGCCGGaa > 1:5343671/1‑36 (MQ=255)
aCTTTTGACGATTTCACCATGTCGGTAACGCCGGaa > 1:6449970/1‑36 (MQ=255)
ttttGACGATTTCACCATGTCGGTAACGCCGGAACt > 1:5374213/1‑36 (MQ=255)
ttttGACGATTTCACCATGTCGGTAACGCCGGAACt > 1:5779643/1‑36 (MQ=255)
ttttGACGATTTCACCATGTCGGTAACGCCGGAACt < 1:6538408/36‑1 (MQ=255)
tttGACGATTTCACCATGTCGGTAACGCCGGAACTg > 1:7417340/1‑36 (MQ=255)
tttGACGATTTCACCATGTCGGTAACGCCGGAACTg < 1:3376851/36‑1 (MQ=255)
ttGACGATTTCACCATGTCGGTAACGCCGGAACTGa > 1:4417251/1‑36 (MQ=255)
tGACGATTTCACCATGTCGGTAACGCCGGAACTGAc < 1:3812971/36‑1 (MQ=255)
tGACGATTTCACCATGTCGGTAACGCCGGAACTGAc < 1:5671248/36‑1 (MQ=255)
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GCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGAC > REL606/1484084‑1484152
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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