Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,311,493 | C→A | 18.4% | intergenic (+1/+38) | yfaO → / ← ais | predicted NUDIX hydrolase/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,311,493 | 0 | C→A | 18.4% | 3.6 ‑4.4 ‑0.0 | 41 | intergenic (+1/+38) | yfaO/ais | predicted NUDIX hydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (0/8): ref base (17/16): total (17/24) | ||||||||||
Fisher's exact test strand distribution p-value = 1.28e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.99e-01 |
CGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACAATGATGACAGCCATTACTGGCTGTCAGATTGA > REL606/2311460‑2311526
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cGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACaa > 1:5107176/1‑36 (MQ=255)
cGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACaa > 1:5387769/1‑36 (MQ=255)
cGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACaa < 1:1545660/36‑1 (MQ=255)
cGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACaa > 1:1966877/1‑36 (MQ=255)
gAAAAACGTTACGTTTGAAAGGTCTTCTGTAACAat < 1:4922143/36‑1 (MQ=255)
gAAAAACGTTACGTTTGAAAGGTCTTCTGTAACAat > 1:3966438/1‑36 (MQ=255)
aaaaaCGTTACGTTTGAAAGGTCTTCTGTAACAatg > 1:4335230/1‑36 (MQ=255)
aaaaCGTTACGTTTGAAAGGTCTTCTGTAACAatga > 1:825562/1‑36 (MQ=255)
aaaaCGTTACGTTTGAAAGGTCTTCTGTAACAatga < 1:5413030/36‑1 (MQ=255)
aaaCGTTACGTTTGAAAGGTCTTCTGTACCAatgac < 1:7083518/36‑2 (MQ=255)
aaaCGTTACGTTTGAAAGGTCTTCTGTAACAatgat < 1:2615094/36‑1 (MQ=255)
aaCGTTACGTTTGAAAGGTCTTCTGTAACAatgatg > 1:1749153/1‑36 (MQ=255)
ttacgttTGAAAGGTCTTCTGTAACAATGATGACAg < 1:1731585/36‑1 (MQ=255)
tacgttTGAAAGGTCTTCTGTAACAATGATGACAGc > 1:8369035/1‑36 (MQ=255)
tacgttTGAAAGGTCTTCTGTAACAATGATGACAGc < 1:2633686/36‑1 (MQ=255)
acgttTGAAAGGTCTTCTGTAACAATGATGACAGcc > 1:923694/1‑36 (MQ=255)
acgttTGAAAGGTCTTCTGTAACAATGATGACAGcc < 1:1343790/36‑1 (MQ=255)
cgttTGAAAGGTCTTCTGTAACAATGATGACAGCCa < 1:4782202/36‑1 (MQ=255)
cgttTGAAAGGTCTTCTGTAACAATGATGACAGCCa > 1:2073012/1‑36 (MQ=255)
cgttTGAAAGGTCTTCTGTAACAATGATGACAGCCa < 1:7220553/36‑1 (MQ=255)
gttTGAAAGGTCTTCTGTAACAATGATGACAGCCAt < 1:6044715/36‑1 (MQ=255)
agAACGGTCTTCTGTAACAATGATGCCAGCCATTAc < 1:2023177/35‑1 (MQ=37)
gAAAGGTCTTCTGTAACAATGATGACAGCCATTACt > 1:2466790/1‑36 (MQ=255)
aaGGTCTTCTGTAAAAATGATGACAGCCATTACTgg < 1:646969/36‑1 (MQ=255)
aaGGTCTTCGGTAAAAATGATGACAGCCATTGCTgg < 1:4817673/36‑1 (MQ=25)
aGGTCTTCTGTAACAATGATGACAGCCATTACTGGc > 1:6392292/1‑36 (MQ=255)
ggTTTTCTGAAAAAATGATGACAGCCATTACTGGCt < 1:2345918/36‑1 (MQ=25)
ggTCTTCTGTAACAATGATGACAGCCATTACTGGCt < 1:1321525/36‑1 (MQ=255)
ggTCTTCTGTAAAAATGATGACAGCCATTACTGGCt < 1:2518733/36‑1 (MQ=255)
gTCTTCTGTAACAATGATGACAGCCATTACTGGCTg > 1:3480776/1‑36 (MQ=255)
gTCTTCTGTAACAATGATGACAGCCATTACTGGCTg > 1:936874/1‑36 (MQ=255)
ttttctGTAAAAATAATGACAGCCATTACTGGCTGt < 1:2173439/34‑1 (MQ=37)
tcttctATAAAAATGATTACAGCCATTACTGGCTGt < 1:3119634/36‑1 (MQ=21)
cttctAAAAAAATGATGACAGCCATTACTGGCTGTc < 1:1453461/36‑1 (MQ=25)
ttGTAAAAATGACGACAGCCATTACTGGCTGTCAGa < 1:7621405/35‑1 (MQ=37)
ctGTAACAATGGTGACAGCCATTACTGGATGTCAGa < 1:3669005/36‑1 (MQ=37)
ctGTAACAATGATGACAGCCATTACTGGCTGTCCGa > 1:3529361/1‑36 (MQ=255)
ggaaCAATGATGACAGCCATTACTGGCTGCAAGAtt > 1:6230423/3‑36 (MQ=37)
gTAACAATGATGACAGCCATTACTGGCTGTCAGAtt < 1:1324682/36‑1 (MQ=255)
aaaCAATGATGACAGCCATTACTGGCTGTCAGATTg < 1:6623187/35‑1 (MQ=255)
aaCAATGATGACAGCCATTACTGGCTGGCAGAttta > 1:4664490/1‑34 (MQ=38)
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CGAAAAACGTTACGTTTGAAAGGTCTTCTGTAACAATGATGACAGCCATTACTGGCTGTCAGATTGA > REL606/2311460‑2311526
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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