Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,037,598 | +C | 12.8% | coding (1397/2061 nt) | ECB_02838 ← | GspD, hypothetical type II secretion protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,037,598 | 1 | .→C | 12.8% | 11.6 ‑3.9 0.0 | 39 | coding (1397/2061 nt) | ECB_02838 | GspD, hypothetical type II secretion protein |
Reads supporting (aligned to +/- strand): new base (0/5): ref base (20/14): total (20/19) | ||||||||||
Fisher's exact test strand distribution p-value = 2.02e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCACC > REL606/3037563‑3037633
|
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTaa < 1:947291/36‑1 (MQ=255)
cGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.c < 1:4093135/36‑1 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc < 1:1533716/36‑1 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc > 1:2555468/1‑36 (MQ=255)
tGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCg < 1:7160256/36‑1 (MQ=255)
agagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCt < 1:1209241/36‑1 (MQ=255)
agagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCt < 1:1836286/36‑1 (MQ=255)
gagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGccgg > 1:4946423/1‑34 (MQ=255)
gagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTg < 1:4646541/36‑1 (MQ=255)
agCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGc > 1:5900135/1‑36 (MQ=255)
cACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCAc > 1:5137836/1‑36 (MQ=255)
cACGTTAGAGCGGGAGTCTTTTTTAA.CCGCCTGCAc < 1:7424569/36‑1 (MQ=37)
aCGTAAGGGCTGGAGTCGTTTTAAA.CCGCCTGCAcc < 1:4015052/36‑1 (MQ=25)
gTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAg > 1:6159837/1‑36 (MQ=255)
gTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAg > 1:6407908/1‑36 (MQ=255)
tAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAgcg > 1:646267/1‑36 (MQ=255)
tAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAgcg > 1:4958216/1‑36 (MQ=255)
agagCTGGAGTCGTTTTTAA.CCGCCTGCACCAgcgc > 1:7497480/1‑36 (MQ=255)
agagCGGGAGTTTTTTTAAA.CCGCCTGCACCAgcgc < 1:2877340/36‑1 (MQ=16)
gagCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGcc > 1:3138805/1‑36 (MQ=255)
gagCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGcc > 1:2084917/1‑36 (MQ=255)
gagCGGGATTCGTTTTAAA.CCGCCTGCACCAGCGcc < 1:628144/36‑1 (MQ=25)
ccgggATTCTTTTTAAC.CCGCCTGCACCAGCGCCAt < 1:6396253/33‑1 (MQ=9)
cTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATc > 1:803251/1‑36 (MQ=255)
tGGAGTCTTTTTTAA.CCGCCTGCACCAGCGCCATcc < 1:4946317/36‑1 (MQ=255)
gAGTCTTTTTAAA.CCGCCTGCACCAGCGCCATCCAg < 1:4053734/36‑1 (MQ=37)
aGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGt > 1:150068/1‑36 (MQ=255)
gTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTc > 1:6651836/1‑36 (MQ=255)
ctctttttAACCCGCCTGCACCAGCGCCATCCAGTc < 1:2479887/33‑1 (MQ=21)
tttttttAC.CCGCCTGCACCAGCGCCATCCAGTCGc < 1:7321300/34‑1 (MQ=25)
cGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGc > 1:7778589/1‑36 (MQ=255)
cGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGc > 1:6113406/1‑36 (MQ=255)
gTTTTTAA.CCGCCTGAACCAGCGCCATCCAGTCGcc > 1:1688620/1‑36 (MQ=255)
tttttAACCCGCCTGCACCAGCGCCTTCCAGTCGcc < 1:5096557/36‑1 (MQ=21)
tttttAACCCGCCTGCACCAGCGCCATCCAGTCGcc < 1:5270872/36‑1 (MQ=25)
tttttAACCCGCCTGCACCAGCGCCATCCAGTCGcc < 1:7519772/36‑1 (MQ=25)
tttttAACCCGCCTGCACCAGCGCCATCCAGTCGcc < 1:3685196/36‑1 (MQ=25)
tttttAA.CCGCCTGCACCAGCGCCATCCAGTCGCCt > 1:6432126/1‑36 (MQ=255)
tttttAA.CCGCCTGCACCAGCGCCATCCAGTCGCCt > 1:4813217/1‑36 (MQ=255)
ttttgAA.CCGCCTGCACCAGCGCAATCCAGTCGCCt > 1:4309115/1‑36 (MQ=37)
ttttaAC.CCGCCTGCACCAGCGCCATCCAGTCGCCt < 1:2140643/36‑1 (MQ=25)
ttttAA.CCGCCTGCACCAGCGCCATCCAGTCGCCtt > 1:5366752/1‑36 (MQ=255)
tAA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTca < 1:5217033/36‑1 (MQ=255)
aa.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcac > 1:3750213/1‑36 (MQ=255)
aa.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcac > 1:1908572/1‑36 (MQ=255)
a.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcacc > 1:7414663/1‑36 (MQ=255)
a.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcacc > 1:4658482/1‑36 (MQ=255)
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GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCACC > REL606/3037563‑3037633
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|