Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,248,957 | 0 | A→T | 94.1% | 5.3 ‑0.5 ‑0.1 | 68 | 2292 | infB | translation initiation factor IF‑2 |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (35/29): ref base (3/1): total (38/30) | ||||||||||
Fisher's exact test strand distribution p-value = 6.24e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.67e-01 |
AATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTG > REL606/3248924‑3248988
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aaTCAGGTTATAGATGACGGAGTAGTAACGCAGTTc > 1:5038181/1‑36 (MQ=255)
aaTCAGGTTATAGATGACGGAGTAGTAACGCAGTTc < 1:3977609/36‑1 (MQ=255)
aaTCAGGTTATAGATGACGGAGTAGTAACGCAGTTc > 1:1830446/1‑36 (MQ=255)
aTCAGGTTATAGATGACGGAGTAGTAACGCAGTTcc < 1:7905356/36‑1 (MQ=255)
aTCAGGTTATAGATGACGGAGTAGTAACGCAGTTcc < 1:3814745/36‑1 (MQ=255)
tCAGGTTATAGATGACGGAGTAGTAACGCAGTTCCa > 1:6000604/1‑36 (MQ=255)
tCAGGTTATAGATGACGGAGTAGTAACGCAGTTCCa < 1:4744245/36‑1 (MQ=255)
tCAGGTTATAGATGACGGAGTAGTAACGCAGTTCCa < 1:2796548/36‑1 (MQ=255)
cAGGTTATAGATGACGGAGTAGTAACGCAGTTCCAg < 1:948895/36‑1 (MQ=255)
aGGTTATAGATGACGGAGTAGTAACGCAGTTCCAgg > 1:7262606/1‑36 (MQ=255)
aGGTTATAGATGACGGAGTAGTAACGCAGTTCCAgg > 1:1687959/1‑36 (MQ=255)
ggTTATAGATGACGGAGTAGTAACGCAGTTCCAGGc < 1:1386575/36‑1 (MQ=255)
ggTTATAGATGACCGAGTAGTAACGCAGTTCCAGGc > 1:5301696/1‑36 (MQ=37)
gTTATAGATGACGGAGTAGTAACGCAGTTCCAGGCt < 1:3310878/36‑1 (MQ=255)
gTTATAGATGACGGAGTAGTAACGCAGTTCCAGGCt < 1:1119912/36‑1 (MQ=255)
ttATAGATGACGGTGTAGTAACGCAGTTCCAGGCtt > 1:1947231/1‑36 (MQ=37)
ttATAGATGACGGAGTAGTAACGCAGTTCCAGGCtt < 1:5868738/36‑1 (MQ=255)
ttATAGATGACGGAGTAGTAACGCAGTTCCAGGCtt > 1:2887406/1‑36 (MQ=255)
tataGATGACGGAGTAGTAACGCAGTTCCAGGCttt > 1:4164725/1‑36 (MQ=255)
ataGATGACGGAGTAGTAACGCAGTTCCAGGCTTTc > 1:1194672/1‑36 (MQ=255)
ataGATGACGGAGTAGTAACGCAGTTCCAGGCTTTc > 1:2471370/1‑36 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTCCAGGCTTTcc > 1:2208465/1‑36 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTCCAGGCTTTcc < 1:4655723/36‑1 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTCCAGGCTTTcc > 1:1709943/1‑36 (MQ=255)
taGATGACGGAGTAGTAACGCAGTTACAGGCtttac > 1:3203192/1‑34 (MQ=37)
aGATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCg > 1:5526357/1‑36 (MQ=255)
aGATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCg < 1:1420748/36‑1 (MQ=255)
aGATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCg > 1:2676534/1‑36 (MQ=255)
aGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCg < 1:6018193/36‑1 (MQ=255)
aGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCg > 1:1519609/1‑36 (MQ=255)
gATGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGc > 1:6561418/1‑36 (MQ=255)
aTGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCt < 1:1743063/36‑1 (MQ=255)
tGACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCtt < 1:2142475/36‑1 (MQ=255)
gACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTc < 1:833531/36‑1 (MQ=255)
gACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTc < 1:4563393/36‑1 (MQ=255)
gACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTc < 1:5634435/36‑1 (MQ=255)
gACGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTc > 1:7245502/1‑36 (MQ=255)
aCGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCa < 1:3687842/36‑1 (MQ=255)
cGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCaa < 1:6576746/36‑1 (MQ=255)
cGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCaa > 1:3936414/1‑36 (MQ=255)
cGGAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCaa > 1:5603684/1‑36 (MQ=255)
ggAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAAt < 1:3409598/36‑1 (MQ=255)
ggAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAAt < 1:7799286/36‑1 (MQ=255)
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAAt > 1:7596404/1‑36 (MQ=255)
ggAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAAt > 1:2860048/1‑36 (MQ=255)
gAGTAGTAACGCAGTTCCAGGCTTTCCGCTTCAATc < 1:393839/36‑1 (MQ=255)
agtagtAACGCAGTTCCAGGCTTTCCGCTTCAATCa > 1:6281333/1‑36 (MQ=255)
agtagtAACGCAGTTCCAGGCTTTCCGCTTCAATCa > 1:2000420/1‑36 (MQ=255)
agtagtAACGCAGTTCCAGGCTTTCCGCTTCAATCa > 1:6375920/1‑36 (MQ=255)
gtagtaACGCAGTTCCAGGCTTTCCGCTTCAATCAc < 1:5641799/36‑1 (MQ=255)
gtagtaACGCAGTTCCAGGCTTTCCGCTTCAATCAc > 1:6310182/1‑36 (MQ=255)
gtagtaACGCAGTTCCAGGCTTTCCGCTTCAATCAc < 1:6212873/36‑1 (MQ=255)
tagtaACGCAGTTCCAGGCTTTCCGCTTCAATCACt > 1:7390900/1‑36 (MQ=255)
tagtaACGCAGTTCCAGGCTTTCCGCTTCAATCACt < 1:963781/36‑1 (MQ=255)
tagtaACGCAGTTCCAGGCTTTCCGCTTCAATCACt > 1:1336099/1‑36 (MQ=255)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCACttt > 1:2871128/1‑36 (MQ=255)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCACttt > 1:157202/1‑36 (MQ=255)
gtaACGCAGTTCCAGGCTTTCCGCTTCAATCACttt < 1:3264520/36‑1 (MQ=255)
taccGCAGTTCCAGGCTTTCCGCTTCAATCCCTTTa < 1:1476201/33‑1 (MQ=25)
taACGCAGTTCCAGGCTTTCCGCTTCAATCACTTTa < 1:1323356/36‑1 (MQ=255)
taACGCAGTTCCAGGCTTTCCGCTTCAATCACTTTa > 1:1709501/1‑36 (MQ=255)
aaCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTAc > 1:6363275/1‑36 (MQ=255)
aaCGCAGTTCCAGGCTTTCCGCTTCAATCACTTTAc > 1:7174050/1‑36 (MQ=255)
aaCGCAGTTCCAGGCTTTCCGCTTCAACCACTTTAc > 1:5197225/1‑36 (MQ=37)
cGCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGt < 1:5865343/36‑1 (MQ=255)
cGCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGt > 1:6602764/1‑36 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg > 1:2784484/1‑36 (MQ=255)
gCAGTTCCAGGCTTTCCGCTTCAATCACTTTACGTg > 1:3740267/1‑36 (MQ=255)
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AATCAGGTTATAGATGACGGAGTAGTAACGCAGATCCAGGCTTTCCGCTTCAATCACTTTACGTG > REL606/3248924‑3248988
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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