Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,856,086 | G→T | 27.4% | intergenic (+117/+150) | yeaP → / ← yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,856,086 | 0 | G→T | 27.4% | 2.4 ‑2.3 ‑0.1 | 18 | intergenic (+117/+150) | yeaP/yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (6/7): total (11/7) | ||||||||||
Fisher's exact test strand distribution p-value = 1.01e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.43e-01 |
ATTTTTAGCATGGTTTTTTATTGGCGGCTATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGATTA > REL606/1856052‑1856121
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aTTTTTAGCATGGTTTTTTATTGGCGGCTAtgctgc < 1:7660821/36‑1 (MQ=255)
ttttAGCATGGTTTTTTATTGGCGGCTATGCTGccc < 1:7444582/36‑1 (MQ=255)
tAGCATGGTTTTTTATTGGCGGCTATTCTTcccccg > 1:2666897/1‑34 (MQ=37)
cATGGTTTTTTATTGGCGGGTATTCTTTCCCggggg > 1:6910312/1‑34 (MQ=16)
cATGGTTTTTTATTGGCGGCTATGTTTCCCCcgggg > 1:3150088/1‑34 (MQ=18)
ggTTTTTTATTGGCGGCTATTTCTCCCCGGGAgggt > 1:6894207/1‑33 (MQ=12)
ggTTTTTTATTGGCGGCTATGCTGCCCCGGGAGCAt < 1:7806357/36‑1 (MQ=255)
gTTTTTTATTGGCGGCTATGCTGCCCCGGGAGCATa < 1:3136202/36‑1 (MQ=255)
ttttATTGGCGGCTATTCTTCCCCCGGGGCATAAAg > 1:58007/1‑36 (MQ=16)
ttATTGGCGGCTATGCTGCCCCGGGAGCATAAAGAt < 1:895445/36‑1 (MQ=255)
aTTGGCGGCTATGCTGCCCCGGGAGCATAAAGATGa < 1:1954186/36‑1 (MQ=255)
ttGGCGGCTATGCTGCCCCGGGAGCATAAAGATGaa < 1:4412054/36‑1 (MQ=255)
ggcggcTATGCTGCCCCGGGAGCATAAAGATGaaaa > 1:5815602/1‑36 (MQ=255)
ggcggcTATGCTGCCCCGGGAGCATAAAGATGaaaa > 1:5404119/1‑36 (MQ=255)
cggcTATGCTGCCCCGGGAGCATAAAGATGaaaaaa > 1:135163/1‑36 (MQ=255)
aggcTATGATGCCCCGGGAGCATAAAGATGaaaaaa < 1:3833577/35‑1 (MQ=255)
ggcTATGCTGCCCCGGGAGCATAAAGATGaaaaaaa > 1:2870882/1‑36 (MQ=255)
gcTATGCTGCCCCGGGAGCATAAAGATGAAAAAaac > 1:2484928/1‑36 (MQ=255)
aTGCTGCCCCGGGAGCATAAAGATGAAAAAaacaac > 1:227485/1‑36 (MQ=255)
tgctgcCCCGGGAGCATAAAGATGAAAAAAACAACg > 1:5830513/1‑36 (MQ=255)
ctgcCCCGGGAGCATAAAGATGAAAAAAACAACGat > 1:1633640/1‑36 (MQ=255)
tgcCCCGGGAGCATAACGATGAAAAAAACAACGatt > 1:4561573/1‑36 (MQ=255)
gcCCCGGGAGCATAAAGATGAAAAAAACAACGatta > 1:7526419/1‑36 (MQ=255)
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ATTTTTAGCATGGTTTTTTATTGGCGGCTATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGATTA > REL606/1856052‑1856121
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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