Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,170,704 | G→T | 14.2% | G199C (GGT→TGT) | ygjR → | predicted NAD(P)‑binding dehydrogenase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,170,704 | 0 | G→T | 14.2% | 2.3 ‑3.5 ‑0.0 | 44 | 595 | ygjR | predicted NAD(P)‑binding dehydrogenase |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (19/18): total (26/18) | ||||||||||
Fisher's exact test strand distribution p-value = 3.06e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.91e-01 |
CTTTTACTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAACCGCCAGTTTA > REL606/3170670‑3170739
|
cTTTTACTGCCTGGCGTCGGCGGTAGCGTTATTTgg < 1:4821301/36‑1 (MQ=255)
cTTTTACTGCCTGGCGTCGGCGGTAGCGTTATTTgg < 1:1656732/36‑1 (MQ=255)
ttttACTGCCTGGCGTCGGCGGTAGGGTTATTTgtg > 1:5207486/1‑34 (MQ=37)
ttttACTGCCTGGCGTCGGCGGTAGCGTTTTTTTGt > 1:6187278/1‑36 (MQ=37)
ttACTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGa < 1:6692690/36‑1 (MQ=255)
ttACTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGa < 1:3349982/36‑1 (MQ=255)
aCTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGc < 1:4766336/36‑1 (MQ=255)
cTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGcc < 1:1537707/36‑1 (MQ=255)
cTGCCTGGCGTCGGCGGTAGCGGTATTTTGGGAggc > 1:2841529/1‑34 (MQ=21)
tGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGCCg < 1:6970527/36‑1 (MQ=255)
tGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGCCg < 1:3324254/36‑1 (MQ=255)
gCCTGGCGTCGGCGGTAGCGTTTTTTTGTGAGGCGa > 1:5471730/1‑36 (MQ=25)
ccTGGCGTCGGCGGTAGCGTTATTTTGTGAGCCGaa > 1:3443948/1‑36 (MQ=255)
ccTGGCGTCGGCGGTAGCGTTATTTGGTGAGCCGaa < 1:631354/36‑1 (MQ=255)
ccTGGCGTCGGCGGGAGCGTTTTTTGGTGAGCCGaa > 1:2080361/1‑36 (MQ=37)
tGGCGTCGGCGGTAGTGGTATTTTGTGTGACGagaa > 1:2411768/1‑36 (MQ=9)
tGGCGTCGGCGGTAGCGTTATTTGGTGAGCCGaaaa > 1:2920998/1‑36 (MQ=255)
tGGCGTCGGCGGTAGCGTTATTTGGTGAGCCGaaaa < 1:1624072/36‑1 (MQ=255)
ggCGTCGGCGGTAGCGTTTTTTGGTGAGCCGCAAAg > 1:3668973/1‑36 (MQ=38)
ggCGTCGGCGGTAGCGTTATTTGGTGAGCCGAAAAg > 1:4523432/1‑36 (MQ=255)
gCGTCGGCGGTAGCGTTTTTTTGTGAGCCGAAAAGc > 1:1940524/1‑36 (MQ=37)
cGTCGGCGGTAGCGTTATTTGGTGAGCCGAAAAGCg < 1:6885855/36‑1 (MQ=255)
tCGGCGGTAGCGTTTTTTTGTGAGCCGGAAAGCggg > 1:4716550/1‑34 (MQ=21)
ggcggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCa > 1:3308993/1‑36 (MQ=255)
ggcggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCa > 1:4227609/1‑36 (MQ=255)
gcggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAg < 1:5686607/36‑1 (MQ=255)
cggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAgg > 1:6357656/1‑36 (MQ=255)
cggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAgg < 1:5930514/36‑1 (MQ=255)
cggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAgg > 1:4436812/1‑36 (MQ=255)
cggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAgg < 1:4811229/36‑1 (MQ=255)
ggTAGCGTTATTTGGTGAGGCGAAAAGCGTGCAGGc < 1:3070572/36‑1 (MQ=255)
ggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGc > 1:7762342/1‑36 (MQ=255)
ggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGc > 1:5905881/1‑36 (MQ=255)
ggTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGc > 1:1354324/1‑36 (MQ=255)
ggTAGCGTTATTTGGTGAACCTAAAAGCGTGCAGGc < 1:370808/36‑1 (MQ=37)
aGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAc > 1:1079104/1‑36 (MQ=255)
gCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAcc < 1:4963247/36‑1 (MQ=255)
gCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAcc < 1:5603354/36‑1 (MQ=255)
gCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAcc < 1:4864112/36‑1 (MQ=255)
gCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAcc > 1:4251090/1‑36 (MQ=255)
gCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAAcc < 1:3478502/36‑1 (MQ=255)
cGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAACCg > 1:3870259/1‑36 (MQ=255)
cGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAACCg > 1:1137967/1‑36 (MQ=255)
gTTATTTGGTGAGCCGAAAAGCGTGCAGGCAACCGc > 1:5809844/1‑36 (MQ=255)
aTTTGGTGAGCCGAAAAGCGTGCAGGCAACCGCCAg > 1:6720237/1‑36 (MQ=255)
tttGGTGAGCCGAAAAGCGTGCAGGCAACCGCCAGt > 1:4712572/1‑36 (MQ=255)
tttGGTGAGCCGAAAAGCGTGCAGGCAACCGCCAGt > 1:3665772/1‑36 (MQ=255)
ggTGAGCCGAAAAGCGTGCAGGCAACCGCCAGTTTa > 1:4130301/1‑36 (MQ=255)
ggTGAGCCGAAAAGCGTGCAGGCAACCGCCAGTTTa > 1:1518832/1‑36 (MQ=255)
|
CTTTTACTGCCTGGCGTCGGCGGTAGCGTTATTTGGTGAGCCGAAAAGCGTGCAGGCAACCGCCAGTTTA > REL606/3170670‑3170739
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|