New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3289193 =49 (0.980)6 (0.120) 4/58 NT 13.5% coding (93/930 nt) yhcC predicted Fe‑S oxidoreductase
?REL606 3912273 = 28 (0.470)intergenic (+53/‑87) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

CCACGCCCGATGGTACCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGCACCTTTTG  >  REL606/3289158‑3289228
                                   |                                   
ccacGCCCGATGGTACCGTCACGGTTAGGGCAGCTa                                     <  1:261155/36‑1 (MQ=255)
ccacGCCCGATGGCACCGTCACGGTTAGGGCAGCTa                                     >  1:5023099/1‑36 (MQ=255)
 tgtctgctcctcggttatgtttttaaggtcaaaaaa                                    <  1:5187269‑M1/2‑1 (MQ=255)
  gtctgctcctcggttatgtttttaaggtcaaaaaaa                                   <  1:3031057‑M1/3‑1 (MQ=255)
  gtctgctcctcggttatgtttttaaggtcaaaaaaa                                   >  1:5245643‑M1/34‑36 (MQ=255)
  gtctgctcctcggttatgtttttaaggtcaaaaaaa                                   <  1:1692055‑M1/3‑1 (MQ=255)
  acGCCCGATGGTACCGTCACGGTTAGGGCAGCTaaa                                   <  1:2025975/36‑1 (MQ=255)
   tctgctcctcggttatgtttttaaggtcaaaaaaaa                                  <  1:2359230‑M1/4‑1 (MQ=255)
     tgctcctcggttatgtttttaaggtcaaaaAAAAcc                                <  1:3057289‑M1/6‑1 (MQ=255)
     cccGATGGTACCGTCACGGTTAGGGCAGCTAAAAcc                                <  1:101867/36‑1 (MQ=255)
     cccGATGGTACCGTCACGGTTAGGGCAGCTAAAAcc                                <  1:6879047/36‑1 (MQ=255)
       cGATGGTACCGTCACGGTTAGGGCAGCTAAAAccgc                              <  1:2782631/36‑1 (MQ=255)
       cGATGGTACCGTCACGGTTAGGGCAGCTAAAAccgc                              <  1:5564429/36‑1 (MQ=255)
       cGATGGTACCGTCACGGTTAGGGCAGCTAAAAccgc                              <  1:5398382/36‑1 (MQ=255)
        gATGGTACCGTCACGGTTAGGGCAGCTAAAAccgcc                             >  1:3617015/1‑36 (MQ=255)
        gATGGTACCGTCACGGTTAGGGCAGCTAAAAccgcc                             >  1:2162026/1‑36 (MQ=255)
        gATGGTACCGTCACGGTTAGGGCAGCTAAAAccgcc                             >  1:5054157/1‑36 (MQ=255)
         aTGGTACCGTCACGGTTAGGGCAGCTAAAAccgccg                            >  1:3246503/1‑36 (MQ=255)
           ggTACCGTCACGGTTAGGGCAGCTAAAACCGCCGTg                          >  1:2004004/1‑36 (MQ=255)
           ggTACCGTCAAGGTTAGGGCAGCTAAAAccgccggg                          >  1:5895596/1‑34 (MQ=38)
            gTACCGTCACGGTTAGGGCAGCTAAAACCGCCGTGc                         >  1:3563750/1‑36 (MQ=255)
             tACCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCa                        >  1:3924106/1‑36 (MQ=255)
              aCCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAg                       >  1:2625760/1‑36 (MQ=255)
              aCCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAg                       >  1:6861414/1‑36 (MQ=255)
              aCCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAg                       >  1:1444793/1‑36 (MQ=255)
               tcGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGc                      >  1:2668443/2‑36 (MQ=255)
               ccGTCGCGCTAAGGGAAACAAAAACCGCCGTGCAGc                      <  1:1154793/36‑1 (MQ=9)
               ccGTCAGGGTGAGGGCAGCAAAAACCGCCGTGCAGc                      <  1:1941727/36‑1 (MQ=25)
               ccGCCAGGGTTAGGGAAGAAAAAACCGCCGTGCAGc                      <  1:1467760/36‑1 (MQ=16)
                cGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCg                     >  1:4931310/1‑36 (MQ=255)
                cGTCACGGTTAGGGCAGCTAAAAACGCCGTGCAgag                     >  1:5191368/1‑34 (MQ=37)
                 gTCAGGGTTAGGGCAGCAAAAACCGCCGTGCAGCGt                    <  1:4294781/36‑1 (MQ=37)
                 gTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGt                    >  1:839287/1‑36 (MQ=255)
                 gTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGt                    >  1:1680905/1‑36 (MQ=255)
                 gTCACGGTTAGGGCAGAAAAAACCGCCGTGCAGCGt                    <  1:4446632/36‑1 (MQ=37)
                  tCACGGTTAGGGCAGCTAAAACCGCCGTGCAGTGTc                   >  1:3520360/1‑36 (MQ=255)
                  tCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTc                   >  1:4339365/1‑36 (MQ=255)
                  tCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTc                   >  1:7541521/1‑36 (MQ=255)
                  tCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTc                   >  1:2589225/1‑36 (MQ=255)
                   cACGGTTAGGACAGAAAAAACCGCCGTGCAGCGTCa                  <  1:3280441/36‑1 (MQ=25)
                    aCGGTTAGGGTAGCTAAAACCGCCGTGCAGCGTCAg                 >  1:1427206/1‑36 (MQ=255)
                    aCGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTCAg                 >  1:6773233/1‑36 (MQ=255)
                     gggTTAGGGCAGCTAAAACCGCCGTGCAGCGTCAGc                <  1:1246867/35‑1 (MQ=255)
                     gggTTAGGGCAGCAAAAACCGCCGTGCAGCGTCAGc                <  1:6656139/35‑1 (MQ=255)
                      ggTTAGGGCAGCTAAAACCGCCGTGCAGCGTCAGCt               >  1:3993429/1‑36 (MQ=255)
                        ttAGGGAAGAAAAACCCGCCGTGCAGCGTCAGCTTa             <  1:6747956/36‑1 (MQ=19)
                          agggcaaaaAAAACCGCCGTGCAGCGTCAGCTTATg           >  1:4845598‑M1/10‑36 (MQ=255)
                          aGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATg           >  1:6356567/1‑36 (MQ=255)
                          aGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATg           >  1:590165/1‑36 (MQ=255)
                          aGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATg           >  1:1359453/1‑36 (MQ=255)
                          aGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATg           >  1:4874606/1‑36 (MQ=255)
                           ggtcaaaaAAATCCGCCGTGCAGCGTCAGCTTATGc          >  1:634997‑M1/9‑36 (MQ=255)
                           gggCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGc          >  1:1387425/1‑36 (MQ=255)
                             gCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGCAc        >  1:5276134/1‑36 (MQ=255)
                             gCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGCAc        >  1:7062893/1‑36 (MQ=255)
                             gCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGCAc        >  1:3488404/1‑36 (MQ=255)
                              cAGCTAAAACCGCCGTGTAGCGTCAGCTTATGCAcc       >  1:60968/1‑36 (MQ=255)
                              aagaaAAAACCGCCGTGCAGCGTCAGCTTATGCAcc       >  1:2265830‑M1/6‑36 (MQ=255)
                               agcaAAAACCGCCGTGCAGCGTCAGCTTATGCACCt      >  1:7580164‑M1/5‑36 (MQ=255)
                               aGCTAAAACCGCCGTGCAGCGTCAGCTTATGCACCt      >  1:3319629/1‑36 (MQ=255)
                                tcTAAAACCGCCGTGCAGCGTCAGCTTATGCACCtt     <  1:7185046/35‑1 (MQ=255)
                                gCTAAAACCGCCGTGCAGCGTCAGCTTATGCACCtt     >  1:3572970/1‑36 (MQ=255)
                                ccaaaacCCGCCGTGCAGCGTCAGCTTATGCACCtt     <  1:2765645/33‑1 (MQ=37)
                                 cTAAAACCGCCGTGCAGCGTCAGCTTATGCACCttt    >  1:5439041/1‑36 (MQ=255)
                                 aaAAACCCGCCGTGCAGCGTCAGCTTATGCACCttt    >  1:4860640‑M1/3‑36 (MQ=255)
                                  tAAAACCGCCGTGCAGCGTCAGCTTATGCACCtttt   >  1:4815472/1‑36 (MQ=255)
                                  aAAACCCGCCGTGCAGCGTCAGCTTATGCACCtttt   >  1:4531100‑M1/2‑36 (MQ=255)
                                   AAACCCGCCGTGCAGCGTCAGCTTATGCACCTTTTg  >  1:1241584‑M1/1‑36 (MQ=255)
                                   |                                   
CCACGCCCGATGGTACCGTCACGGTTAGGGCAGCTAAAACCGCCGTGCAGCGTCAGCTTATGCACCTTTTG  >  REL606/3289158‑3289228

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 18 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG