New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 420234937 (0.630)38 (0.640) 29/68 NT 51.7% coding (211/825 nt) iclR DNA‑binding transcriptional repressor
?REL606 4202661 = 34 (0.560)intergenic (‑102/‑98) iclR/metH DNA‑binding transcriptional repressor/B12‑dependent methionine synthase

CCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTCG  >  REL606/4202314‑4202384
                                   |                                   
ccAATGTCCCAGTTCGCCGACCTGACGCACGAAACC                                     <  1:7118491‑M1/36‑1 (MQ=255)
 cAATGTCCCAGTTCGCCGACCGGACGCACGAACccc                                    >  1:3711589/1‑36 (MQ=37)
  aaTGTCCCAGTTCGCCGACCTGACGCACGAAACCtc                                   >  1:5496005‑M1/1‑34 (MQ=255)
   aTGTCCCAGTTCGCCGACCTGACGCACGAAACCtca                                  <  1:3938582‑M1/36‑4 (MQ=255)
   aTGTCCCAGTTCGCCGACCTGACGCACGAAACCtca                                  >  1:5238930‑M1/1‑33 (MQ=255)
   aTGTCCCAGTTCGCCGACCTGACGCACGAAACCctg                                  >  1:167269/1‑36 (MQ=255)
    tGTCCCAGTTCGCCGACCTGACGCACGAACCCtcat                                 <  1:3591113‑M1/36‑5 (MQ=255)
    tGTCCCAGTTCGCCGACCTGACGCACGAAACCtcat                                 <  1:4420897‑M1/36‑5 (MQ=255)
    tGTCCCAGTTCGCCGACCTGACGCACGAAACCctgc                                 >  1:6350264/1‑36 (MQ=255)
     gTCCCAGTTCGTCGACCTGACGCACGAAACCctgct                                >  1:6156616/1‑36 (MQ=255)
     gTCCCAGTTCGCCGACCTGACTCACGAAACCtcatg                                <  1:5222481‑M1/36‑6 (MQ=255)
     gTCCCAGTTCGCCGACCTGACGCACGAAACCtcatg                                >  1:4601646‑M1/1‑31 (MQ=255)
      tCCCAGTTCGCCTACCTGACTCACGAAACCctgctg                               <  1:5965663/36‑1 (MQ=37)
      tCCCAGTTCGCCGACCTGACGCACGAAACCtcatgt                               >  1:6832570‑M1/1‑30 (MQ=255)
      tCCCAGTTCGCCGACCTGACGCACGAAACCtcatgt                               <  1:523832‑M1/36‑7 (MQ=255)
      acccaGTTCGCCGACCTGACGCACGAAACCtcatgt                               <  1:5892133‑M1/35‑7 (MQ=255)
       cccAGTTCGCCGGCCTGACGCACGAAACCtcatgtt                              <  1:5403276‑M1/36‑8 (MQ=255)
       cccAGTTCGCCGACCTGACGCACGAAACCCTGCTGt                              >  1:6111393/1‑36 (MQ=255)
       cccAGTTCGCCGACCTGACGCACGAAACCCTGCTGt                              <  1:5409513/36‑1 (MQ=255)
        ccAGTTCGCCGACCTGACGCACGAAACCCTGCTGtt                             <  1:2773804/36‑1 (MQ=255)
         cAGTTCGCCGACCTGACGCACGAAACCtcatgttgc                            <  1:7732369‑M1/36‑10 (MQ=255)
           gTTCGCCGACCTGACGCACGAAACCtcatgttgcgt                          <  1:3337716‑M1/36‑12 (MQ=255)
           gTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCa                          >  1:1315343/1‑36 (MQ=255)
           gTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCa                          <  1:2434124/36‑1 (MQ=255)
           gTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCa                          >  1:2011869/1‑36 (MQ=255)
           gTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCa                          >  1:7820181/1‑36 (MQ=255)
            ttCGCCGACCTGACGCACGAAACCtcatgttgcgtg                         <  1:2291203‑M1/36‑13 (MQ=255)
            ttCGCCGACCTGACGCACGAAACCtcatgttgcgtg                         <  1:4219580‑M1/36‑13 (MQ=255)
            ttCGCCGACCTGACGCACGAAACCCTGCTGTTGCAt                         >  1:1241521/1‑36 (MQ=255)
             tCGCCGACCTGACGCACGAAACCCTGCTGTTGCAtt                        <  1:5562400/36‑1 (MQ=255)
              cGCCGACCTGACGCACGAACCCtcatgttgcgtggt                       <  1:5969308‑M1/36‑15 (MQ=255)
               gCCGACCTGACGCACGAAACCtcatgttgcgtggtg                      <  1:6280743‑M1/36‑16 (MQ=255)
               gCCGACCTGACGCACGAAACCCTGCTGTTGCATtgt                      <  1:4082325/36‑1 (MQ=255)
               gCCGACCTGACGCACGAAACCCTGCTGTTGCATtgt                      <  1:5085482/36‑1 (MQ=255)
               gCCGACCTGACGCACGAAACCCTGCTGTTGCATtgt                      >  1:6652732/1‑36 (MQ=255)
                ccGACCTGACGCACGAAACCCTGCTGTTGCATtgtg                     <  1:1327228/36‑1 (MQ=255)
                 cGACCTGACGCACGAAACCtcatgttgcgtggtggt                    <  1:7018487‑M1/36‑18 (MQ=255)
                 cGACCTGACGCACGAAACCtcatgttgcgtggtggt                    <  1:7258016‑M1/36‑18 (MQ=255)
                 cGACCTGACGCACGAAACCCTGCTGTTGCATTGTgg                    <  1:5220070/36‑1 (MQ=255)
                 cGACCTGACGCACGAAACCCTGCTGTTGCATTGTgg                    >  1:4712520/1‑36 (MQ=255)
                  gACCTGACGCACGAAGCCCTGCTGTTGCATTGTGGt                   <  1:7719294/36‑1 (MQ=255)
                  gACCTGACGCACGAAACCtcatgttgcgtggtggtc                   >  1:4863916‑M1/1‑18 (MQ=255)
                  gACCTGACGCACGAAACCCTGCTGTTGCATTGTGGt                   <  1:3264766/36‑1 (MQ=255)
                   aCCTGACGCACGAAACCCTGCTGTTGCATTGTGGtt                  >  1:2471462/1‑36 (MQ=255)
                     cTGACGCACGAAACCtcatgttgcgtggtggtcgct                <  1:6787823‑M1/36‑22 (MQ=255)
                     cTGACGCACGAAACCtcatgttgcgtggtggtcgct                >  1:6361430‑M1/1‑15 (MQ=255)
                     cTGACGCACGAAACCtcatgttgcgtggtggtcgct                >  1:7319751‑M1/1‑15 (MQ=255)
                      tGACGCACTAAACCtcatgttgcgtggtggtcgctt               <  1:4749353‑M1/36‑23 (MQ=255)
                      tGACGCACGAAACCtcatgttgcgtggtggtcgctt               <  1:3341701‑M1/36‑23 (MQ=255)
                      tGACGCACGAAACCtcatgttgcgtggtggtcgctt               <  1:2707451‑M1/36‑23 (MQ=255)
                      tGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGc               <  1:5271009/36‑1 (MQ=255)
                       gACGCACGAAACCtcatgttgcgtggtggtcgcttt              <  1:1545676‑M1/36‑24 (MQ=255)
                       gACGCACGAAACCtcatgttgcgtggtggtcgcttt              >  1:3371640‑M1/1‑13 (MQ=255)
                        aCGCACGAACCCCTGCTGTTGCATTGTGGTTAGCAg             <  1:2669250/36‑1 (MQ=255)
                        aCGCACGAAACCtcatgttgcgtggtggtcgctttt             <  1:5732715‑M1/36‑25 (MQ=255)
                        aCGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAg             <  1:3564809/36‑1 (MQ=255)
                        aCGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAg             <  1:5301588/36‑1 (MQ=255)
                          gCACGAAGCCCTGCTGTTGCATTGTGGTTAGCAGGc           <  1:1621194/36‑1 (MQ=255)
                          gCACGAAACCtcatgttgcgtggtggtcgcttttac           <  1:5501705‑M1/36‑27 (MQ=255)
                          gCACGAAACCtcatgttgcgtggtggtcgcttttac           >  1:3450944‑M1/1‑10 (MQ=255)
                          gCACGAAACCtcatgttgcgtggtggtcgcttttac           <  1:1294843‑M1/36‑27 (MQ=255)
                          gCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGc           >  1:4864919/1‑36 (MQ=255)
                            gcgAAACCtcatgttgcgtggtggtcgctttttcca         <  1:4977113‑M1/35‑29 (MQ=255)
                             cGAAACCtcatgttgcgtggtggtcgcttttaccac        <  1:6565782‑M1/36‑30 (MQ=255)
                             cGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGt        >  1:4142209/1‑36 (MQ=255)
                              gAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTg       >  1:7271430/1‑36 (MQ=255)
                               aaaCCCTGCTGTTGCATTGTGGTTAGCAGGCGGTgg      >  1:3189023/1‑36 (MQ=255)
                                aaCCtcatgttgcgtggtggtcgcttttaccacaga     >  1:1910669‑M1/1‑4 (MQ=255)
                                 aCCtcatgttgcgtggtggtcgcttttaccacagat    <  1:4829025‑M1/36‑34 (MQ=255)
                                 aCCtcatgttgcgtggtggtcgcttttaccacagat    >  1:4016585‑M1/1‑3 (MQ=255)
                                 aCCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGt    >  1:3507673/1‑36 (MQ=255)
                                 aCCCTGCTGTTCCATTGTGGATAGCAGGCGGTGGGt    <  1:146004/36‑1 (MQ=38)
                                  cctcatgttgcgtggtggtcgcttttaccacagatg   <  1:3399137‑M1/36‑35 (MQ=255)
                                  cccTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTc   <  1:5924258/36‑1 (MQ=255)
                                  cccTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTc   <  1:3129271/36‑1 (MQ=255)
                                  cccTGCTGTTGCATTATGGTTAGCAGGCGGTGGGTc   >  1:4978592/1‑36 (MQ=255)
                                   ctcatgttgcgtggtggtcgcttttaccacagatgc  <  1:5586482‑M1/36‑36 (MQ=255)
                                   ctcatgttgcgtggtggtcgcttttaccacagatgc  <  1:5425439‑M1/36‑36 (MQ=255)
                                   ctcatgttgcgtggtggtcgcttttaccacagatgc  <  1:4351758‑M1/36‑36 (MQ=255)
                                   ctcatgttgcgtggtggtcgcttttaccacagatgc  <  1:2409766‑M1/36‑36 (MQ=255)
                                   ctcatgttgcgtggtggtcgcttttaccacagatgc  <  1:1159257‑M1/36‑36 (MQ=255)
                                   ccTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTCg  >  1:3468778/1‑36 (MQ=255)
                                   |                                   
CCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTCG  >  REL606/4202314‑4202384

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG