New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640118 =35 (0.690)6 (0.120) 3/62 NT 13.6% intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 = 2825478 41 (0.710)coding (741/1629 nt) ECB_02649 protein similar to L‑ribulokinase AraB

CATTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAGCGCCAGGCGGAAG  >  REL606/2825444‑2825513
                                  |                                   
cATTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGg                                    <  1:601547‑M2/36‑2 (MQ=255)
cATTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGg                                    <  1:3520744‑M2/36‑2 (MQ=255)
 aTTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgc                                   >  1:3484711‑M2/1‑34 (MQ=255)
 aTTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgc                                   >  1:3071309‑M2/1‑34 (MQ=255)
  ttAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgcg                                  <  1:3763904‑M2/36‑4 (MQ=255)
  ttAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgcg                                  <  1:4982480‑M2/36‑4 (MQ=255)
   tAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgcgg                                 >  1:2624270‑M2/1‑32 (MQ=255)
   tAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgcgg                                 <  1:6662457‑M2/36‑5 (MQ=255)
   tAGTCGTTAATCCTAACTCTTCAGCAGCTGTGgcgg                                 <  1:6016900‑M2/36‑5 (MQ=255)
    aGTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGt                                <  1:414175/36‑1 (MQ=255)
    aGTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGt                                <  1:4765367/36‑1 (MQ=255)
     gTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGtt                               <  1:5105182/36‑1 (MQ=255)
     gTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGtt                               <  1:1397804/36‑1 (MQ=255)
      tCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTa                              <  1:245625/36‑1 (MQ=255)
      tCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTa                              <  1:4479856/36‑1 (MQ=255)
      tCGTTAATACTAACTCTTCAGCAGCTGTGGCGGTTa                              <  1:5383171/36‑1 (MQ=255)
       cGTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTaa                             <  1:7262485/36‑1 (MQ=255)
        gTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTAAc                            <  1:2221532/36‑1 (MQ=255)
         ttAATCCTAACTCTTCAGCAGCTGTGgcgggttttt                           <  1:2164140‑M2/36‑11 (MQ=255)
         ttAATCCTAACTCTTCAGCAGCTGTGgcgggttttg                           <  1:7043565‑M2/36‑11 (MQ=255)
          tAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGt                          <  1:6313577/36‑1 (MQ=255)
          tAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGt                          <  1:3905786/36‑1 (MQ=255)
          tAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGt                          <  1:4846901/36‑1 (MQ=255)
          tAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGt                          <  1:2353051/36‑1 (MQ=255)
            aTCCTAACTCTTCAGCAGCTGTGgcgggtttttttt                        <  1:4851749‑M2/36‑14 (MQ=255)
             tCCTAACTCTTCAGCAGCTGTGgcgggttttttttt                       <  1:116366‑M2/36‑15 (MQ=255)
             tCCTAACTCTTCAGCAGCTGTGgcgggttttttttc                       <  1:2611985‑M2/36‑15 (MQ=255)
              ccTAACTCTTCAGCAGCTGTGgcgggtttttgtttc                      <  1:2756904‑M2/36‑16 (MQ=255)
              ccTAACTCTTCAGCAGCTGTGGCGGTTAACGTTccc                      <  1:357329/36‑1 (MQ=255)
               cTAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCa                     <  1:6567066/36‑1 (MQ=255)
               cTAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCa                     <  1:3847559/36‑1 (MQ=255)
               cTAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCa                     <  1:5629553/36‑1 (MQ=255)
                tAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCAc                    <  1:1485057/36‑1 (MQ=255)
                 aaCTCTTCAGCAGCTGTGGCGGTTAACGTTCCCACg                   <  1:4240021/36‑1 (MQ=255)
                 aaCTCTTCAGCAGCTGTGGCGGTTAACGTTCCCACg                   <  1:1606029/36‑1 (MQ=255)
                  aCTCTTCAGCAGCTGTGGCGGTTAACGTTCCCACgg                  <  1:4017737/36‑1 (MQ=255)
                   ctctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGc                 <  1:7460791/36‑1 (MQ=255)
                   ctctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGc                 <  1:2526800/36‑1 (MQ=255)
                   ctctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGc                 <  1:4869144/36‑1 (MQ=255)
                    tctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCa                <  1:3237243/36‑1 (MQ=255)
                     ctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAg               <  1:5314763/36‑1 (MQ=255)
                     ctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAg               <  1:2969813/36‑1 (MQ=255)
                     ctTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAg               <  1:3181462/36‑1 (MQ=255)
                      ttCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAgc              <  1:6168480/36‑1 (MQ=255)
                      tccagcagCTGTGGCGGTTAACGTTCCCACGGCAgc              <  1:7246231/34‑1 (MQ=255)
                         agcagcTGTGGCGGTTAACGTTCCCACGGCAGCGcc           <  1:6249820/36‑1 (MQ=255)
                         agcagcTGTGGCGGTTAACGTTCCCACGGCAGCGcc           <  1:3952220/36‑1 (MQ=255)
                         agcagcTGTGGCGGTTAACGTTCCCACGGCAGCGcc           <  1:1000495/36‑1 (MQ=255)
                           cagcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAg         <  1:6030943/36‑1 (MQ=255)
                           cagcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAg         <  1:1893825/36‑1 (MQ=255)
                            agcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAgg        <  1:3392296/36‑1 (MQ=255)
                            agcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAgg        <  1:3236318/36‑1 (MQ=255)
                             gcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAGGc       <  1:5928461/36‑1 (MQ=255)
                             gcTGTGGCGGTTAACGTTCCCACGGCAGCGCCAGGc       <  1:5913372/36‑1 (MQ=255)
                               tgtgGCGGTTAACGTTCCCACGGCAGCGCCAGGCgg     <  1:2969759/36‑1 (MQ=255)
                                gtgGCGGTTAACGTTCCCACGGCAGCGCCAGGCGga    <  1:5059372/36‑1 (MQ=255)
                                  ggCGGTTAACGTTCCCACGGCAGCGCCAGGCGggag  >  1:3953076/1‑36 (MQ=255)
                                  |                                   
CATTAGTCGTTAATCCTAACTCTTCAGCAGCTGTGGCGGTTAACGTTCCCACGGCAGCGCCAGGCGGAAG  >  REL606/2825444‑2825513

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG