Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,190,653 | 0 | A→G | 7.8% | 1.4 ‑9.7 0.0 | 76 | 328 | yhaO | predicted transporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (7/0): ref base (14/54): total (22/54) | ||||||||||
Fisher's exact test strand distribution p-value = 5.86e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAAT > REL606/3190618‑3190688
|
cAGGTAGGAAGCTCTATCGTTGGTGATGGCGGTGGa < 1:1313194/36‑1 (MQ=255)
cAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGa < 1:6257530/36‑1 (MQ=255)
cAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGa < 1:5147471/36‑1 (MQ=255)
aGGGAGGAAGCACTAGCGTTGGTGATGGCGGTGGaa < 1:2672542/36‑1 (MQ=37)
ggTAGGAAGCACTATCGTTGGTGATGGCGGTGGAAt < 1:3075521/36‑1 (MQ=255)
ggTAGGAAGCACTATCGTTGGTGATGGCGGTGGAAt < 1:7372994/36‑1 (MQ=255)
ggTAGGAAGAACTATCGTTGGTGATGGAGGGGGGAt > 1:5112431/1‑36 (MQ=16)
gTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATa < 1:4895267/36‑1 (MQ=255)
gTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATa < 1:6877208/36‑1 (MQ=255)
gTAGGAAGCACTATCGTTGGTGATGGCGGAGGAAtt > 1:6715876/1‑35 (MQ=255)
aGGAAGCACTATCCTTGGTGATGGCGGTGGAATAGa > 1:3199020/1‑36 (MQ=255)
ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGAc < 1:6940257/36‑1 (MQ=255)
gAAGCACTATCGTTGGTGATGGCGGTGGGATAGACg > 1:6222748/1‑36 (MQ=255)
gAAGCACTATCGTTGGTGATGGCGGTGGGATAGACg > 1:5586752/1‑36 (MQ=255)
gAAGCACTATCGTTGGTGATGGCGGTGGAATAGACg < 1:6431980/36‑1 (MQ=255)
gAAGCACTATCGTTGGTGATGGCGGTGGAATAGACg < 1:2116897/36‑1 (MQ=255)
aaGCACTATCGTTGGTGATGGCGGTGGTATTGAAGa > 1:1254519/1‑36 (MQ=25)
atcACTATCGTTGGTGATGGCGGTGGAATAGACGaa < 1:7485381/34‑1 (MQ=255)
gCACTATCGTTGGTGATGGCGGTGGAATAGACGaaa > 1:2441819/1‑35 (MQ=255)
gCACTATCGTTGGTGATGGCGGTGGAATAGACGAAc < 1:5193017/36‑1 (MQ=255)
gCACTATCGTTGGTGATGGCGGTGGAATAGACGAAc < 1:4839621/36‑1 (MQ=255)
gCACTATCGTTGGTGATGGCGGTGGAATAGACGAAc < 1:3993178/36‑1 (MQ=255)
aCTATCGTTGTTGATGGCGGTGGAATAGACGAACAt < 1:5181564/36‑1 (MQ=255)
aCTATCGTTGGTGATGGCGGTGGGATAGACGAAAAt > 1:3119522/1‑36 (MQ=37)
aCTATCGTTGGTGATGGCGGTGGGATAGAAGAACAt > 1:4118514/1‑36 (MQ=37)
aCTATCGTTGGTGATGGCGGTGGAATAGACGAACAt < 1:6457155/36‑1 (MQ=255)
aCTATCGTTGGTGATGGCGGTGGAATAGACGAACAt > 1:6847649/1‑36 (MQ=255)
aCTATCGTTGGCGATGGCGGTGGAATAGACGAACAt < 1:3900020/36‑1 (MQ=255)
aCTATCGGTGGTGATGGCGGTGGAATAGACGAACAt < 1:6537541/36‑1 (MQ=255)
cTATCGTTGGTGATGGCGGTGGAATAGACGAACATc < 1:5205264/36‑1 (MQ=255)
cTATCGTTGGTGATGGCGGTGGAATAGACGAACATc < 1:4459255/36‑1 (MQ=255)
tATCGTTGGTGATTTCGGTTGAATAGACGAACATcc > 1:5448095/1‑36 (MQ=37)
tATCGTTGGTGATGGCGGTGGAATAGACGAAAATcc > 1:3535984/1‑36 (MQ=255)
aTCGTTGGTGATGGCGGTGGGATAGACGAACAGCCa > 1:1623040/1‑36 (MQ=37)
aTCGTTGGTGATGGCGGTGGAATAGACGAACATCCa < 1:6361231/36‑1 (MQ=255)
tCGTTGGTGATGGCGGTGGAATAGACGAACATCCaa < 1:687192/36‑1 (MQ=255)
cGTTGGTGATGGCGGTGGAATAGACGAACATCCaaa < 1:1440858/36‑1 (MQ=255)
cGTTGGTGATGGCGGTGGAATAGACGAACATCCaaa < 1:4797632/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGAATAGACGAACATCCAAAt < 1:5020584/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGAATAGACGAACATCCAAAt < 1:284019/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGAATAGACGAACATCCAAAt < 1:6796462/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGAATAGACGAACATCCAAAt < 1:3722875/36‑1 (MQ=255)
gTTGGTGATGGCGGTGGAATAGACGAAAATTCAAAt > 1:1874030/1‑36 (MQ=37)
ttGGTGATGGCGGTGGGAAAGACGAAAATACAAATc > 1:4091410/1‑36 (MQ=16)
ttGGTGATGGCGGTGGAATAGACGAACATCCAAATc < 1:6154331/36‑1 (MQ=255)
ttGGTGATGGCGGTGGAATAGACGAACATCCAAATc < 1:3833149/36‑1 (MQ=255)
ttGGTGATGGCGGTGGAATAGACGAACATCCAAATc < 1:89282/36‑1 (MQ=255)
ttGGTGATGGCGGTGGAATAGACGAACATCCAAATc < 1:1417217/36‑1 (MQ=255)
tGGTGATGGCGGTGGAATAGACGAACATCCAAATCa < 1:5298733/36‑1 (MQ=255)
ggTGATGGCGGTGGAATAGACGAACATCCAAATCAc < 1:5357117/36‑1 (MQ=255)
gTGATGGCGGTGGAATAGACGAACATCCAAATCAcc < 1:3148979/36‑1 (MQ=255)
gTGATGGCGGTGGAATAGACGAACATCCAAATCAcc < 1:1649122/36‑1 (MQ=255)
tGATGGCGGTGGAATAGACGAACATCCAAATCACCa < 1:5137039/36‑1 (MQ=255)
tGATGGCGGTGGAATAGACGAACATCCAAATCACCa < 1:2758082/36‑1 (MQ=255)
tGATGGCGGTGGAATAGACGAACATCCAAATCACCa < 1:1448181/36‑1 (MQ=255)
gATGGCGGTGGAATAGACGAACATTCAAATCACCAg > 1:7180583/1‑36 (MQ=255)
gATGGCGGTGGAATAGACGAACATCCAAATCACCAg < 1:2328479/36‑1 (MQ=255)
gATGGCGGTGGAATAGACGAACATCCAAATCACCAg < 1:603608/36‑1 (MQ=255)
gATGGCGGTGGAATAGACGAACATCCAAATCACCAg < 1:948650/36‑1 (MQ=255)
aTGGCGGTGGAATAGACGAACATCCAAATCACCAGc < 1:3363803/36‑1 (MQ=255)
aTGGCGGTGGAATAGACGAACATCCAAATAACCAGc > 1:1192/1‑36 (MQ=255)
tGGCGGTGGAATAGACGAACATCCAAATCACCAGCa < 1:7411463/36‑1 (MQ=255)
ggaggTGGAATAGACGAACATCCAAATCACCAGCAt < 1:503745/33‑1 (MQ=255)
ggCGGTGGAATAGACGAACATCCAAATCACCCGCAt > 1:3014371/1‑36 (MQ=255)
ggCGGTGGAATAGACGAACATCCAAATCACCAGCAt > 1:989275/1‑36 (MQ=255)
ggCGGTGGAATAGACGAACATCCAAATCACCAGCAt < 1:5332000/36‑1 (MQ=255)
ggCGGTGGAATAGACGAACATCCAAATCACCAGCAt > 1:4878674/1‑36 (MQ=255)
ggCGGTGGAATAGACGAACATCCAAATCACCAGCAt < 1:340471/36‑1 (MQ=255)
gCGGTGGAATAGACGAACATCCAAATCACCAGCAtt < 1:3510983/36‑1 (MQ=255)
cGGTGGAATAGACGAACATCCAAATCACCAGCATTa < 1:4144455/36‑1 (MQ=255)
ggTGGAATAGACGAACATCCAAATCACCAGCATTAc < 1:637684/36‑1 (MQ=255)
ggTGGAATAGACGAACATCCAAATCACCAGCATTAc < 1:639217/36‑1 (MQ=255)
ggTGGAATAGACGAACATCCAAATCACCAGCATTAc < 1:5035597/36‑1 (MQ=255)
ggTGGAATAGACGAACATCCAAATCACCAGCATTAc < 1:15163/36‑1 (MQ=255)
gTGGAATAGACGAACATCCAAATCACCAGCATTACg > 1:4795968/1‑36 (MQ=255)
tGGAATAGACGAACATCCAAATCACCAGCATTACGa < 1:6030197/36‑1 (MQ=255)
ggAATAGACGAACATCCAAATCACCAGCATTACGaa < 1:2088667/36‑1 (MQ=255)
ggAATAGACGAACATCCAAATCACCAGCATTACGaa < 1:4244540/36‑1 (MQ=255)
gAATAGACGAACATCCAAATCACCAGCATTGCGaaa < 1:381783/36‑1 (MQ=255)
gAATAGACGAACATCCAAATCACCAGCATTACGaaa > 1:3145266/1‑36 (MQ=255)
aaTAGACGAACATCCAAATCACCAGCATTACGAAAt < 1:3884681/36‑1 (MQ=255)
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CAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAAT > REL606/3190618‑3190688
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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