Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 340,545 | C→T | 26.4% | L182L (CTG→CTA) | mhpR ← | DNA‑binding transcriptional activator, 3HPP‑binding |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 340,545 | 0 | C→T | 26.4% | 2.7 ‑3.7 0.0 | 15 | 546 | mhpR | DNA‑binding transcriptional activator, 3HPP‑binding |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (3/8): total (7/8) | ||||||||||
Fisher's exact test strand distribution p-value = 2.56e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTGCCCGGTG > REL606/340514‑340580
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aGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCAGaa < 1:2481414/36‑1 (MQ=255)
gccagccaGGTCAGGCCCGAGGCTGTTTTCAGAAGc < 1:78257/36‑1 (MQ=255)
gccagccaGGTCAGGCCCGAGGCGGTTTTTAGGAgg > 1:4538872/1‑35 (MQ=37)
agcctgGTCAGGCCCGAGGCGGTTTTCAGAAGCGGc < 1:428650/36‑1 (MQ=255)
agccagGTCAGGCCCGAGGCGGTTTTTTGAAGAggg > 1:1831883/1‑35 (MQ=25)
agccagGTCAGGCCCGAGGCGGTTTTCAGAAGCGGc < 1:571791/36‑1 (MQ=255)
gccagGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCa < 1:3337266/36‑1 (MQ=255)
agGTCAGGCCCGAGGCGGTTTTTAGAAGCGGTaaaa > 1:1603267/1‑35 (MQ=25)
cAGGCCCGAGGCGGGTTTTAAAAGCGGCTAACGGCg > 1:5087412/1‑36 (MQ=16)
aGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGc < 1:3655526/36‑1 (MQ=255)
aGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCa > 1:5707178/1‑36 (MQ=255)
gCGGTTTTCAGAAGAGGCAAACGTCCCCCGACCAtt > 1:3990773/1‑36 (MQ=38)
ttttCAGAAGCGGCAAACGTCGCCCGACCATTGccc < 1:5018939/36‑1 (MQ=255)
ttCAGAAGCGGCAAACGTCGCCCGACCATTGCCCgg > 1:1527191/1‑36 (MQ=255)
ttCAGAAGCGGCAAACGTCGCCCGACCATTGCCCgg < 1:4325736/36‑1 (MQ=255)
cAGAAGCGGCAAACGTCGCCCGACCATTGCCCgggg > 1:713647/1‑34 (MQ=255)
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AGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCAGAAGCGGCAAACGTCGCCCGACCATTGCCCGGTG > REL606/340514‑340580
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 25 ≤
ATCG
< 37 ≤
ATCG
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