Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 100% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)41 (1.000) 28/64 NT 100% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 0 (0.040)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =0 (0.000)55 (1.340) 33/64 NT 100% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 114 total aligned reads displayed.

TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562
                                   |                                   
tcctccATGTTTGCTTTAAAGGTATTGGCTCCATGG                                     >  1:5418506‑M2/1‑36 (MQ=255)
catttcatcgtccaacaaaatgggtgcagtacaTgg                                     <  1:937589‑M1/3‑1 (MQ=255)
 ccgccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    <  1:942629‑M2/36‑2 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    >  1:1984244‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    >  1:1957766‑M1/33‑36 (MQ=255)
 atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    <  1:569662‑M1/4‑1 (MQ=255)
  tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  1:2046263‑M1/32‑36 (MQ=255)
  ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGtg                                   >  1:4906228‑M2/1‑34 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:4898083‑M1/6‑1 (MQ=255)
   ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:5511555‑M1/6‑1 (MQ=255)
   tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                  <  1:1160114‑M2/36‑4 (MQ=255)
   tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                  <  1:2859617‑M2/36‑4 (MQ=255)
    tcatcgtccaacaaaatgggtgcagtacaTGGTCGc                                 <  1:3830261‑M1/7‑1 (MQ=255)
     catcgtccaacaaaatgggtgcagtacaTGGTCGcc                                >  1:4340277‑M1/29‑36 (MQ=255)
     cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                                >  1:5103398‑M2/1‑31 (MQ=255)
     cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                                >  1:5644853‑M2/1‑31 (MQ=255)
      atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                               <  1:3432307‑M1/9‑1 (MQ=255)
       tGTTTGCTTTAAAGGTATTGGCTCCATGGtgtactg                              <  1:306759‑M2/36‑8 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATTGtgtactgac                            <  1:3763532‑M2/36‑10 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGtgtacttac                            <  1:3887684‑M2/36‑10 (MQ=255)
         tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                            <  1:4495235‑M2/36‑10 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:2824893‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:5926677‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:3233891‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:1554556‑M1/12‑1 (MQ=255)
         gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:5322695‑M1/12‑1 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:4824470‑M2/1‑26 (MQ=255)
          ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           <  1:825250‑M2/36‑11 (MQ=255)
          tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                           >  1:2458162‑M1/24‑36 (MQ=255)
          tccaacaaaatgggtgcagtacaTGGTCGACagaaa                           <  1:1483315‑M1/13‑1 (MQ=255)
           tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                          >  1:1207454‑M2/1‑25 (MQ=255)
           ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                          >  1:1299822‑M1/23‑36 (MQ=255)
            gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                         >  1:1455654‑M2/1‑24 (MQ=255)
            gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                         <  1:855712‑M2/36‑13 (MQ=255)
            gCTTTAAAGGTATTGGCTCCATGGtgtactgacccc                         >  1:662170‑M2/1‑24 (MQ=255)
            caacaaaatgggtgcagtacaTGGTCGCCagaaaga                         <  1:824119‑M1/15‑1 (MQ=255)
            caacaaaatgggtgcagtacaTGGTAGCCagaaaga                         <  1:4975862‑M1/15‑1 (MQ=255)
             aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        <  1:5333950‑M1/16‑1 (MQ=255)
              tttAAAGGTATTGGCTCCATGGtgtactgaccccaa                       <  1:813051‑M2/36‑15 (MQ=255)
              tttAAAGGTATTGGCTCCATGGtgtactgaccccaa                       >  1:5524429‑M2/1‑22 (MQ=255)
              acaaaatgggtgccgtacaTGGTCGCCAgaaagaaa                       <  1:4717525‑M1/17‑1 (MQ=255)
              acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:1736325‑M1/17‑1 (MQ=255)
              acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:1219955‑M1/17‑1 (MQ=255)
               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      >  1:1779516‑M1/19‑36 (MQ=255)
               caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      <  1:2812768‑M1/18‑1 (MQ=255)
                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     <  1:3203603‑M2/36‑17 (MQ=255)
                tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     <  1:403225‑M2/36‑17 (MQ=255)
                 aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                    <  1:3116255‑M2/36‑18 (MQ=255)
                  aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:2818787‑M1/21‑1 (MQ=255)
                  aaGGTATTGGCTCCATGGtgtactgaccccaaaaag                   <  1:244038‑M2/36‑19 (MQ=255)
                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  <  1:3684199‑M1/22‑1 (MQ=255)
                   atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                  <  1:2448874‑M1/22‑1 (MQ=255)
                      tATTGGCTCCATGGtgtacttaccccaaaaagttgg               <  1:4552603‑M2/36‑23 (MQ=255)
                      tATTGGCTCCATGGtgtactgaccccaaaaagttgg               <  1:5888107‑M2/36‑23 (MQ=255)
                      ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa               <  1:403302‑M1/25‑1 (MQ=255)
                      ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa               <  1:1264974‑M1/25‑1 (MQ=255)
                      ggtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCa               <  1:4586627‑M1/25‑1 (MQ=255)
                       gtgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAt              <  1:3864065‑M1/26‑1 (MQ=255)
                        ttGGCTCCATGGtgtactgaccccaaaaagttggac             <  1:5928682‑M2/36‑25 (MQ=255)
                        tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt             >  1:1893187‑M1/10‑36 (MQ=255)
                         tGGCTCCATGGtgtactgaccccaaaaagttggaca            >  1:1332250‑M2/1‑11 (MQ=255)
                         gcagtacaTGGTCGCCAGAAAGAAAATGCGCCATTa            <  1:1695707‑M1/28‑1 (MQ=255)
                          cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa           >  1:3253547‑M1/8‑36 (MQ=255)
                          cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa           >  1:4309354‑M1/8‑36 (MQ=255)
                          cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa           >  1:1834347‑M1/8‑36 (MQ=255)
                           gCTCCATGGtgtactgaccccaaaaagttggacagt          <  1:968183‑M2/36‑28 (MQ=255)
                           gCTCCATGGtgtactgaccccaaaaagttggacagt          >  1:4599144‑M2/1‑9 (MQ=255)
                           gCTCCATGGtgtactgaccccaaaaagttggacagt          <  1:3980702‑M2/36‑28 (MQ=255)
                           agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg          <  1:4931497‑M1/30‑1 (MQ=255)
                            cTCCATGGtgtactgaccccaaaaagttggacagtt         <  1:3146714‑M2/36‑29 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        >  1:4808562‑M1/5‑36 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        <  1:4860952‑M1/32‑1 (MQ=255)
                             tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        >  1:4097900‑M1/5‑36 (MQ=255)
                             tCCATGGtgtactgaccccaaaaagttggacagtta        >  1:5073458‑M2/1‑7 (MQ=255)
                               cATGGtgtactgaccccaaaaagttggacagttaaa      <  1:1599675‑M2/36‑32 (MQ=255)
                               cATGGtgtactgaccccaaaaagttggacagttaaa      <  1:3908495‑M2/36‑32 (MQ=255)
                               cATGGtgtactgaccccaaaaagttggacagttaaa      >  1:3574340‑M2/1‑5 (MQ=255)
                               cATGGggtactgaccccaaaaagttggacagttaaa      <  1:5251465‑M2/36‑32 (MQ=255)
                               accggtgtactgaccccaaaaagttggacagttaaa      >  1:4374485‑M2/4‑5 (MQ=255)
                                aTGGtgtactgaccccaaaaagttggacagttaaac     >  1:660915‑M2/1‑4 (MQ=255)
                                aTGGtgtactgaccccaaaaagttggacagttaaac     >  1:5480529‑M2/1‑4 (MQ=255)
                                aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca     <  1:12209‑M1/35‑1 (MQ=255)
                                aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca     <  1:192310‑M1/35‑1 (MQ=255)
                                aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca     <  1:25451‑M1/35‑1 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   <  1:1252306‑M2/36‑35 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   >  1:5203333‑M2/1‑2 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   >  1:2822743‑M2/1‑2 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   <  1:6139‑M2/36‑35 (MQ=255)
                                  ggtgtactgaccccaaaaagttggacagttaaacac   <  1:4703437‑M2/36‑35 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:5425746/1‑36 (MQ=255)
                                  ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:1380314/1‑36 (MQ=255)
                                  cgtgtactgaccccaaaaagttggacatttaaacac   >  1:2244066‑M2/2‑2 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:656528‑M2/1‑1 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:2740187‑M2/1‑1 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  <  1:3218340‑M2/36‑36 (MQ=255)
                                   gtgtactgaccccaaaaagttggacagttaaacacg  >  1:3322959‑M2/1‑1 (MQ=255)
                                   gtgtactgaacccaaaaagttggacagttaaacacg  >  1:532082‑M2/1‑1 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  <  1:1829316/36‑1 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  >  1:3671421/1‑36 (MQ=255)
                                   gTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATa  >  1:1035372/1‑36 (MQ=255)
                                   |                                   
TCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821492‑1821562

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG