Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546952–547700 | 555923–555877 | 8178–8972 | 24 [20] | [1] 87 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 1 (0.020) | 59 (1.080) | 34/62 | NT | 98.3% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC > REL606/555889‑555959
|
atcatacactagatcagtaagttggcagcatcaccc > 1:5899385‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatctccc > 1:28615‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:3930267‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:4076931‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:2689747‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:4412924‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:2366857‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:7839281‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:7854392‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:7919987‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:8185773‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:7101237‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:5102647‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:185256‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:1086284‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:6460618‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaaggtggcagcatcaccc < 1:7068737‑M1/1‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa > 1:4346446‑M1/35‑36 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa > 1:4255697‑M1/35‑36 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:385865‑M1/2‑1 (MQ=255)
catacactaaatcagtaagttggcagcatcaccCaa < 1:4380691‑M1/3‑1 (MQ=255)
catacactaaatcagtaagttggcagcatcaccCaa > 1:6609360‑M1/34‑36 (MQ=255)
catacactaaatcagtaagttggcagcatcaccCaa > 1:630722‑M1/34‑36 (MQ=255)
atacactaaatcagtaagttggcagcatcaccCaaa < 1:5524795‑M1/4‑1 (MQ=255)
atacactaaatcagtaagttggcagcatcaccCaaa < 1:3741553‑M1/4‑1 (MQ=255)
tacactaaatcagtaagttggcagcatcaccCAAAc < 1:2053384‑M1/5‑1 (MQ=255)
acactaaatcagtaagttggcagcatgaccCAAAcg < 1:7071116‑M1/6‑1 (MQ=255)
acactaaatcagtaagttggcagcatcaccCAAAcg < 1:925918‑M1/6‑1 (MQ=255)
cactaaatcagtaagttggcagcatcaccCAAAcgc < 1:322216‑M1/7‑1 (MQ=255)
cactaaatcagtaagttggcagcatcaccCAAAcgc < 1:4206068‑M1/7‑1 (MQ=255)
actaaatcagtaagttggcagcatcaccCAAAcgcg < 1:2947633‑M1/8‑1 (MQ=255)
taaatcagtaagttggcagcatcaccCAAACGCGCa < 1:8212636‑M1/10‑1 (MQ=255)
taaatcagtaagttggcagcatcaccCAAACGCGCa < 1:1797031‑M1/10‑1 (MQ=255)
taaatcagtaagttggcagcatcacaCAAACGCGCa < 1:6098238‑M1/10‑1 (MQ=255)
aaatcagtaagttggcagcatcaccCAAACGCGCAt < 1:6125692‑M1/11‑1 (MQ=255)
aatcagtaagttggcagcatcaccCAAACGCGCATc < 1:5185725‑M1/12‑1 (MQ=255)
aatcagtaagttggcagcatcaccCAAACGCGCATc < 1:2600843‑M1/12‑1 (MQ=255)
atcagtaagttggcagcatcaccCAAACGCGCATCa > 1:8204109‑M1/24‑36 (MQ=255)
atcagtaagttggcagcatcaccCAAACGCGCATCa < 1:7245457‑M1/13‑1 (MQ=255)
cagtaagttggcagcatcaccCAAACGCGCATCAgg > 1:5236137‑M1/22‑36 (MQ=255)
agtaagttggcagcatcaccCAAACGCGCATCAGGt > 1:7740360‑M1/21‑36 (MQ=255)
agtaagttggcagcatcaccCAAACGCGCATCAGGt > 1:1150883‑M1/21‑36 (MQ=255)
agtaagttggcagcatcaccCAAACGCGCATCAGGt > 1:6143101‑M1/21‑36 (MQ=255)
gtaagttggcagcatcaccCAAACGCGCATCAGGTg > 1:7138902‑M1/20‑36 (MQ=255)
gtaagttggcagcatcaccCAAACGCGCATCAGGTg < 1:6838838‑M1/17‑1 (MQ=255)
gtaagttggcagcatcaccCAAACGCGCATCAGGTg > 1:1305260‑M1/20‑36 (MQ=255)
gtaagttggcagcatcaccCAAACGCGCATCAGGTg < 1:5728958‑M1/17‑1 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc > 1:3738787‑M1/19‑36 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc > 1:5730491‑M1/19‑36 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc < 1:550628‑M1/18‑1 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc < 1:7714341‑M1/18‑1 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc > 1:1862891‑M1/19‑36 (MQ=255)
agttggcagcatcaccCAAACGCGCATCAGGTGCaa < 1:8413599‑M1/20‑1 (MQ=255)
gttggcagcatcaccCAAACGCGCATCAGGTGCAac < 1:5720617‑M1/21‑1 (MQ=255)
gttggcagcatcaccCAAACGCGCATCAGGTGCAac < 1:7264574‑M1/21‑1 (MQ=255)
gttggcagcatcaccCAAACGCGCATCAGGTGCAac < 1:4652621‑M1/21‑1 (MQ=255)
ttggcagcatcaccCAAACGCGCATCAGGTGCAaca < 1:6695932‑M1/22‑1 (MQ=255)
ttggcagcatcaccCAAACGCGCATCAGGTGCAaca > 1:3673814‑M1/15‑36 (MQ=255)
ttggcagcatcaccCAAACGCGCATCAGGTGAAaca < 1:885786‑M1/22‑1 (MQ=255)
tggcagcatcaccCAAACGCGCATCAGGTGCAacat < 1:5399559‑M1/23‑1 (MQ=255)
tggcagcatcaccCAAACGCGCATCAGGTGCAacat > 1:4757901‑M1/14‑36 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata > 1:7213344‑M1/13‑36 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata < 1:1016159‑M1/24‑1 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata < 1:2457432‑M1/24‑1 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata < 1:4620746‑M1/24‑1 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata < 1:5038146‑M1/24‑1 (MQ=255)
gttgttCGCTTCAACCGCGCATCAGTGTCAacatcc > 1:236422/1‑34 (MQ=0)
gcagcatcaccCAAACGCGCATCAGGTGCAacatac > 1:8434819‑M1/12‑36 (MQ=255)
agcatcaccCAAACGCGCATCAGGTGCAacatacat < 1:2174424‑M1/27‑1 (MQ=255)
agcatcaccCAAACGCGCATCAGGTGCAacatacat < 1:6463915‑M1/27‑1 (MQ=255)
agcatcaccCAAACGCGCATCAGGTGCAacatacat < 1:6894830‑M1/27‑1 (MQ=255)
gcatcaccCAAACGCGCATCAGGTGCAACATACAtt < 1:5970938‑M1/28‑1 (MQ=255)
gcatcaccCAAACGCGCATCAGGTGCAACATACAtt > 1:4238016‑M1/9‑36 (MQ=255)
gcatcaccCAAACGCGCATCAGGTGCAACATACAtt > 1:495220‑M1/9‑36 (MQ=255)
catcaccCAAACGCGCATCAGGTGCAACATACATta < 1:6197517‑M1/29‑1 (MQ=255)
atcaccCAAACGCGCATCAGGTGCAACATACATtaa < 1:7735116‑M1/30‑1 (MQ=255)
atcaccCAAACGCGCATCAGGTGCAACATACATtaa > 1:2106613‑M1/7‑36 (MQ=255)
caccCAAACGCGCATCAGGTGCAACATACATtaata < 1:1543643‑M1/32‑1 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa > 1:2646675‑M1/4‑36 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa > 1:5905836‑M1/4‑36 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa > 1:2050442‑M1/4‑36 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa > 1:1124218‑M1/4‑36 (MQ=255)
ccCAAACGCGCATCAGGTGCAACATACATTAATaaa < 1:5744156‑M1/34‑1 (MQ=255)
cCAAACGCGCATCAGGTGCAACATACATTACTAAAt > 1:1763430‑M1/2‑36 (MQ=255)
cCAAACGCGCATCAGGTGCAACATACATTAATAAAt > 1:4345663‑M1/2‑36 (MQ=255)
CAAACGCGCATCAGGTGCAACATACATTAATAAATc > 1:2020794‑M1/1‑36 (MQ=255)
CAAACGCGCATCAGGTGCAACATACATTAATAAATc > 1:5117178‑M1/1‑36 (MQ=255)
|
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC > REL606/555889‑555959
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
|