Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,612,333 | A→G | 22.0% | intergenic (‑82/+240) | ydfQ ← / ← ydfR | predicted lysozyme/predicted protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,612,333 | 0 | A→G | 22.0% | 3.9 ‑4.1 ‑0.0 | 26 | intergenic (‑82/+240) | ydfQ/ydfR | predicted lysozyme/predicted protein |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (8/12): total (14/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.71e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.12e-01 |
TTACCTCATCAGTGATGGGCACTGGCGGGAGGAGGATGTCAATCTGATAAACACAGAGGCGACTA > REL606/1612301‑1612365
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ttACCTCATCAGTGATGGGCACTGGCGggaggagga > 1:1294142/1‑36 (MQ=255)
tACCTCATCAGTGCTGGGCACTGGCGGGTGGGGGAt > 1:4270512/1‑36 (MQ=25)
tACCTCATCAGTGATGGGCACTGGCGGGAGGAGGAt < 1:3993684/36‑1 (MQ=255)
aCCTCATCAGTGATGGGCACTGGCGGGAGGGGGATg > 1:3575105/1‑36 (MQ=255)
catcaGTGATGGGCACTGGCGGGGGGGGGGTGTcta > 1:754611/1‑34 (MQ=25)
caGTGATGGGCACTGGCGGGGGGGGGGTGTGAAttt > 1:1366251/1‑34 (MQ=16)
aGTGATGGGCACTGGCGGGGGGGGGATGTCAATCTg > 1:1567340/1‑36 (MQ=38)
aGTGATGGGCACTGGCGGGGGGAGGATGTCAATCTg > 1:4126933/1‑36 (MQ=255)
aGTGATGGGCACTGGCGGGAGGAGGGTGTCAATCTg > 1:5613082/1‑36 (MQ=255)
gATGGGCACTGGCGGGGGGGGGGTGTCAATCTGATa > 1:4456052/1‑36 (MQ=37)
gATGGGCACTGGCGGGAGGAGGATGTCAATCTGATa < 1:928500/36‑1 (MQ=255)
gATGGGCACTGGCGGGAGGAGGATGTCAATCTGATa < 1:2723613/36‑1 (MQ=255)
aTGGGCACTGGCGGGGGGAGGGGGTTCATCTTATaa > 1:4059812/1‑36 (MQ=12)
aTGGGCACTGGCGGGGGGAGGAAGTGAATCTGGTaa > 1:1527122/1‑36 (MQ=19)
gggCACTGGCGGGAGGAGGATGTCAATCTGATAAac < 1:838157/36‑1 (MQ=255)
gCACTGGCGGGAGGAGGATGTCAATCTGATAAacac < 1:1929892/36‑1 (MQ=255)
gCACTGGCGGGAGGAGGATGTCAATCTGATAAacac < 1:5332652/36‑1 (MQ=255)
cACTGGCGGGAGGAGGATGTCAATCTGATAAAcaca < 1:137425/36‑1 (MQ=255)
aCTGGCGGGAGGAGGATGTCAATCTGATAAACACag < 1:4274428/36‑1 (MQ=255)
cTGGCGGGAGGAGGATGTCAATCTGATAAACACaga < 1:5783744/36‑1 (MQ=255)
cTGGCGGGAGGAGGATGTCAATCTGATAAACACaga > 1:479025/1‑36 (MQ=255)
tGGCGGGAGGAGGATGTCAATCTGATAAACACagag < 1:4093181/36‑1 (MQ=255)
ggCGGGAGGAGGATGTCAATCTGATAAACACAGAgg > 1:717373/1‑36 (MQ=255)
gCGGGAGGAGGATGTCAATCTGATAAACACAGAGGc > 1:3551714/1‑36 (MQ=255)
cGGGAGGAGGATTTCAATCTGATAAACACAGAGGCg < 1:2610979/36‑1 (MQ=255)
gggAGGAGGATGTCAATCTGATAAACACAGAGGCGa > 1:1319612/1‑36 (MQ=255)
gggAGGAGGATGTCAATCTGATAAACACAGAGGCGa < 1:1304031/36‑1 (MQ=255)
ggaggaggaTGTCAATCTGATAAACATAGAGGCGAc > 1:2429479/1‑36 (MQ=255)
ggaggaggaTGTCAATCTGATAAACACAGAGGCGAc < 1:986748/36‑1 (MQ=255)
gaggaggaTGTCAATCTGATAAACACAGAGGCGACt > 1:961530/1‑36 (MQ=255)
aggaggaTGTCAATCTGATAACCACAGAGGCGACTa < 1:1731215/36‑1 (MQ=255)
aggaggaTGTCAATCTGATAAACACAGAGGCGACTa > 1:352520/1‑36 (MQ=255)
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TTACCTCATCAGTGATGGGCACTGGCGGGAGGAGGATGTCAATCTGATAAACACAGAGGCGACTA > REL606/1612301‑1612365
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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