Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 475,288 | +G | 92.1% | coding (18/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 475,288 | 1 | .→G | 92.1% | 5.4 ‑2.5 ‑0.7 | 38 | coding (18/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
Reads supporting (aligned to +/- strand): new base (21/14): ref base (0/3): total (21/17) | ||||||||||
Fisher's exact test strand distribution p-value = 8.06e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.85e-01 |
GCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGC.GGG.G.TGGCGTGATGCATTCCGTCTCCTTTT > REL606/475253‑475318
|
gagAGCACAAGGCCGAAAACAATGGTGGTGAGAAGc > 1:5142946/3‑36 (MQ=21)
gCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGc < 1:6565165/36‑1 (MQ=255)
gCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGc < 1:5550914/36‑1 (MQ=255)
gAGCACAAGGCCGCCAACAATGGTGGTGATAAGC.gg < 1:1805138/36‑1 (MQ=255)
aacacaAGGCCGCCAACAATGGGGGTGATAAGC.ggg > 1:5476873/3‑36 (MQ=38)
gCACAAGGCCGCCAACAATGGTGGTGATAAGC.ggg.g > 1:4973954/1‑36 (MQ=255)
gCACAAGGCCGCCAACAATGGTGGTGATAAGC.ggg.g > 1:691971/1‑36 (MQ=255)
gCACAAGGCCGCCAACAATGGTGGTGATAAGC.ggg.g > 1:5272184/1‑36 (MQ=255)
gCAAAAGGCCGCCAACAATGGTGGTGATAAGC.ggg.g < 1:2362228/36‑1 (MQ=255)
cacaAGGCCGCCAACAATGGTGGTGATAAGC.ggg.gg > 1:7076796/1‑35 (MQ=255)
acaAGGCCGCCAACAATGGTGGTGATAAGC.ggg.ggt < 1:1905281/36‑3 (MQ=255)
acaAGGCCGCCAACAATGGTGGTGATAAGC.ggg.ggt < 1:2375662/36‑3 (MQ=255)
caAGGCCGCCAACAATGGTGGTGATAAGC.ggg.ggtg < 1:3365565/36‑4 (MQ=255)
caAGGCCGCCAACAATGGTGGTGATAAGC.ggg.ggtg < 1:650518/36‑4 (MQ=255)
ggCCGCCAACAATGTTGGTGATAAGC.GGGTG.TGGCg < 1:1495238/36‑1 (MQ=21)
gccgccAACAATGGTGGTGATAAGC.GGG.G.TGGCGTg < 1:1343609/36‑1 (MQ=255)
cgccAACAATGGTGGTGATAAGCGGGG.G.TGGCGTGa < 1:6515538/36‑1 (MQ=37)
cgccAACAATGGTGGTGATAAACGGGG.G.TGGCGTGa > 1:4354824/1‑36 (MQ=25)
gccAACAATGGTGGTGATAAGCGGGG.G.TGGCGTGAt < 1:2770024/36‑1 (MQ=37)
gccAACAATGGTGGTGATAAGCGGGG.G.TGGCGTGAt > 1:5736750/1‑36 (MQ=37)
gccAACAATGGTGGTGATAAGCGGGG.G.TGGCGTGAt > 1:5966941/1‑36 (MQ=37)
caacaaTGGTGGTGATAAGCGGGG.G.TGGCGTGATGc > 1:70535/1‑36 (MQ=37)
caacaaTGGTGGTGATAAGCGGGG.G.TGGCGTGATGc < 1:5264209/36‑1 (MQ=37)
caacaaTGGTGGTGATAAGCGGGG.G.CGGCGTGATGc > 1:1183998/1‑36 (MQ=21)
aacaaTGGTGGTGATAAGCGGGG.G.TGGCGTGATGCa > 1:1994616/1‑36 (MQ=37)
acaaTGGTGGTGATAAGCGGGG.G.TGGCGTGATGCAt < 1:6460633/36‑1 (MQ=37)
gaaTGGTGGTGATAAGCGGGG.G.TGGCGTGATGCAtt < 1:4461230/35‑1 (MQ=25)
aaTGGTGGTGATAAGCGGGG.G.GGGCGTGATGCATTc > 1:3093820/1‑36 (MQ=21)
aTGGTGGTGATAAGCGGGG.G.TGGCGTGATGCATTcc > 1:7034463/1‑36 (MQ=37)
aTGGTGGGGATAAGCGGGG.G.CGGCGTGATGCATTcc > 1:4959795/1‑36 (MQ=16)
tggtggTGATAAGCGGGG.G.TGGCGTGATGCATTCCg < 1:6758436/36‑1 (MQ=37)
ggtggtGATAAGCGGGG.G.TGGCGTGATGCATTCCGt > 1:4055059/1‑36 (MQ=37)
ggtggtGATAAGCGGGG.G.TGGCGTGATGCATTCCGt > 1:1856147/1‑36 (MQ=37)
gtggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtc > 1:3646302/1‑36 (MQ=37)
gtggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtc > 1:2941234/1‑36 (MQ=37)
gtggagATAAGCGGGG.G.TGGCGTGATGCATTCCGtc < 1:537596/36‑1 (MQ=25)
tggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtct < 1:7579302/36‑1 (MQ=37)
ggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtctc < 1:5159910/36‑1 (MQ=37)
ggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtctc > 1:3483192/1‑36 (MQ=37)
ggtgATAAGCGGGG.G.TGGCGTGATGCATTCCGtctc < 1:3341633/36‑1 (MQ=37)
gtgATAAGCGGGG.G.TGGCGTGATGCATTCCGTCTcc < 1:377483/36‑1 (MQ=37)
gtgATAAGCGGGG.G.TGGCGTGATGCATTCCGTCTcc > 1:7826292/1‑36 (MQ=37)
tgATAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCt > 1:6170120/1‑36 (MQ=37)
tgATAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCt < 1:6793506/36‑1 (MQ=37)
tgATAAGAGGGG.G.TGGAGTGATGCATTCCGTCTCCt > 1:7381885/1‑36 (MQ=19)
gATAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCtt < 1:7876116/36‑1 (MQ=37)
gATAAGCGGGG.G.GGGCGTGATGCATTCAGGCTCCtt > 1:697967/1‑36 (MQ=16)
aTAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCttt > 1:1782391/1‑36 (MQ=37)
aTAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCttt > 1:1287061/1‑36 (MQ=37)
tAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCtttt < 1:7902692/36‑1 (MQ=37)
tAAGCGGGG.G.TGGCGTGATGCATTCCGTCTCCtttt > 1:5249600/1‑36 (MQ=37)
tAAGC.GGG.GTTGGGGTGATGCATTCCGTCTCCtttt < 1:6400857/36‑1 (MQ=21)
|
GCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGC.GGG.G.TGGCGTGATGCATTCCGTCTCCTTTT > REL606/475253‑475318
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|