Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,417,696 | C→A | 17.1% | intergenic (‑130/‑286) | emrK ← / → evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,417,696 | 0 | C→A | 17.1% | 4.4 ‑2.7 0.0 | 47 | intergenic (‑130/‑286) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
Reads supporting (aligned to +/- strand): new base (1/8): ref base (18/20): total (19/28) | ||||||||||
Fisher's exact test strand distribution p-value = 6.40e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTT > REL606/2417662‑2417730
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ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa < 1:6094578/36‑1 (MQ=255)
ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa > 1:1489182/1‑36 (MQ=255)
ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa > 1:5436201/1‑36 (MQ=255)
ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa < 1:44148/36‑1 (MQ=255)
cAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaa > 1:555256/1‑36 (MQ=255)
cAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaa < 1:3372337/36‑1 (MQ=255)
aGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaaa < 1:5161186/36‑1 (MQ=255)
gAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaaa < 1:5585787/36‑1 (MQ=255)
gAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaaa < 1:5328736/36‑1 (MQ=255)
gAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaaa < 1:4400103/36‑1 (MQ=255)
aaCGTTGGAGGCCTAATTTAAATGAGGTGCaaaaaa > 1:1124495/1‑36 (MQ=255)
aCGTTGGAGGCCTAATTTAAATGAGGTGCaaaaaaa > 1:5044056/1‑36 (MQ=255)
gTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaac > 1:2396345/1‑36 (MQ=255)
gTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaac < 1:3171723/36‑1 (MQ=255)
ttGGAGGCCTAATTTAAATGAGGTGCAAAAAAaaca > 1:4075567/1‑36 (MQ=255)
tgAGGCCTAATTTAAATGAGGTGAAAAAAAaacaac < 1:2858849/35‑1 (MQ=255)
ggAGGCCTAATTTAAATGACGTGAAAAAAAaacaac < 1:236244/36‑1 (MQ=38)
aGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag > 1:3476097/1‑36 (MQ=255)
aGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag > 1:7413443/1‑36 (MQ=255)
ggCCTAATTTAAATGAGGTGCAAAAAAAACAACaga < 1:2657967/36‑1 (MQ=255)
gCCTAATTTAAATGAGGTGCAAAAAAAACAACagag < 1:4180997/36‑1 (MQ=255)
cTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGa < 1:6321916/36‑1 (MQ=255)
cTAATTTAAATGAGGTGAAAAAAAAACAACAGAGGa < 1:2812689/36‑1 (MQ=255)
cTAATTTAAATGAGGTGAAAAAAAAACAACAGAGGa < 1:3668686/36‑1 (MQ=255)
tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGAc < 1:2781896/36‑1 (MQ=255)
tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGAc < 1:7902351/36‑1 (MQ=255)
aaTTTAAATGAGGTGCAAAAAAAACAACAGAGGACt > 1:6026547/1‑36 (MQ=255)
aTTTAAATGAGGTGAAAAAAAAACAACAGAGGACTa < 1:400327/36‑1 (MQ=255)
tttAAATGAGGTGAAAAAAAAACAACAGAGGACTaa < 1:6571310/36‑1 (MQ=255)
ttAAATGAGGTGCAAAAAAAACAACAGAGGACTaaa > 1:6072578/1‑36 (MQ=255)
ttAAATGAGGTGCAAAAAAAACAACAGAGGACTaaa > 1:6403226/1‑36 (MQ=255)
ttAAATGAGGTGCAAAAAAAACAACAGAGGACTaaa > 1:4497739/1‑36 (MQ=255)
tAAGTGAGGTGAAAAAAAAACAACAGAGGGCTAAAc > 1:6324253/1‑36 (MQ=25)
tAAATGAGGTGCAAAAAAAACAACAGAGGACTAAAc < 1:2156503/36‑1 (MQ=255)
tAAATGAGGTGAAAAAAAAACAACAGAGGACTAAAc < 1:3811333/36‑1 (MQ=255)
aaaTGAGGTGCAAAAAAAACAACAGAGGACTAAAcc > 1:2544692/1‑36 (MQ=255)
aaaTGAGGTGAAAAAAAAACAACAGAGGACTAAAcc < 1:1127991/36‑1 (MQ=255)
ggTGCAAAAAAAACAACAGAGGACTAAACCGTGGCt < 1:3883415/36‑1 (MQ=255)
gTGCAAAAAAAACAACAGAGGACTAAACCGTGGCtt > 1:915065/1‑36 (MQ=255)
gTGCAAAAAAAACAACAGAGGACTAAACCGTGGCtt > 1:95729/1‑36 (MQ=255)
tGCAAAAAAAACAACAGAGGACTAAGCCGTGGCttt < 1:1447749/36‑1 (MQ=255)
tGCAAAAAAAACAACAGAGGACTAAACCGTGGCttt > 1:1329553/1‑36 (MQ=255)
tGCAAAAAAAACAACAGAGGACTAAACCGTGGCttt < 1:7580524/36‑1 (MQ=255)
gCAAAAAAAACAACAGAGGACTAAACCGTGGCtttt < 1:1664107/36‑1 (MQ=255)
gCAAAAAAAACAACAGAGGACTAAACCGTGGCtttt < 1:1818281/36‑1 (MQ=255)
gCAAAAAAAACAACAGAGGACTAAACCGTGGCtttt < 1:4518332/36‑1 (MQ=255)
gCAAAAAAAACAACACAGGACTAAAACGTGGCtttt > 1:2080047/1‑36 (MQ=37)
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CCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTT > REL606/2417662‑2417730
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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