Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 52 [2] | [1] 42 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 36 (0.680) | 26/64 | NT | 97.3% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 1 (0.020) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT > REL606/3894961‑3895031
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tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2718408‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:4095071‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:2337659‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2005026‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:189383‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4495357‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:5541653‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1426309‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7187602‑M1/1‑36 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg < 1:5154731‑M1/36‑2 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg < 1:2033233‑M1/36‑2 (MQ=255)
gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAgg < 1:4511524‑M1/36‑3 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt > 1:5941901‑M1/1‑33 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt < 1:2502327‑M1/36‑4 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAc < 1:2577437/36‑1 (MQ=38)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt < 1:415321‑M1/36‑5 (MQ=255)
gtTTAACTGTCCAACTTTTTGGGGTCAGTACAGAct < 1:4922983/36‑2 (MQ=25)
tttAACTGTCCAACTTTTTGGGGTCAGTACAtgttg > 1:4306690‑M1/1‑31 (MQ=255)
tttAACTGTCCAACTTTTTGGGGTCAGTACAggttg > 1:7273294‑M1/1‑31 (MQ=255)
tttAACTGTCCAACTTTTTGGGGTCAGTACAggttg < 1:3296812‑M1/36‑6 (MQ=255)
ttAACTGTCCAACTTTTTGGGGTCAGTACAggttgc > 1:6106442‑M1/1‑30 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc < 1:3356077‑M1/36‑8 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc < 1:636296‑M1/36‑8 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc > 1:55872‑M1/1‑29 (MQ=255)
tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc > 1:1668192‑M1/1‑29 (MQ=255)
cTGTCCAACTTTTTGGGGTCAGTACAggttgcccag < 1:1606942‑M1/36‑11 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg < 1:1390497‑M1/36‑12 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg > 1:1605999‑M1/1‑25 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg < 1:4993825‑M1/36‑12 (MQ=255)
tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg > 1:2628626‑M1/1‑25 (MQ=255)
gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt > 1:5756695‑M1/1‑24 (MQ=255)
gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt > 1:4396828‑M1/1‑24 (MQ=255)
tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg < 1:6739700‑M1/36‑14 (MQ=255)
cAACTTTTTGGGGTCAGTACAggttgcccaggtgac > 1:2479516‑M1/1‑21 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc < 1:1571106‑M1/36‑17 (MQ=255)
cTTTTTGGGGTCAGTACAggttgcccaggtgaccag < 1:1894995‑M1/36‑19 (MQ=255)
tGGGGTCAGTACAggttgcccaggtgaccagcacgc > 1:1674917‑M1/1‑13 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:1074735‑M1/36‑25 (MQ=255)
gggTCAGTACAggttgcccaggtgaccagcacgccg < 1:5467170‑M1/36‑26 (MQ=255)
gggTCAGTACAggttgcccaggtgaccagcacgccg > 1:4436011‑M1/1‑11 (MQ=255)
gggTCAGTACAggttgcccaggtgaccagcacgccg > 1:1219124‑M1/1‑11 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:6077468‑M1/36‑28 (MQ=255)
gTCAGTACAggttgcccaggtgaccagcacgccgcc < 1:7169086‑M1/36‑28 (MQ=255)
tCAGTACAggttgcccaggtgaccagcacgccgcca > 1:3528745‑M1/1‑8 (MQ=255)
cAGTACAggttgcccaggtgaccagcacgccgccaa > 1:4592622‑M1/1‑7 (MQ=255)
cAGTACAggttgcccaggtgaccagcacgccgccaa > 1:4504166‑M1/1‑7 (MQ=255)
aGTACAtgttgcccaggtgaccagcacgccgccaag < 1:6438483‑M1/36‑31 (MQ=255)
aGTACAggttgcccaggtgaccagcacgccgccaag > 1:5726451‑M1/1‑6 (MQ=255)
aGTACAggttgcccaggtgaccagcacgccgccaag < 1:5785792‑M1/36‑31 (MQ=255)
cAggttgcccaggtgaccagcacgccgccaagaacg > 1:606162‑M1/1‑2 (MQ=255)
aggttgcccaggtgaccagcacgccgccaagaacgg > 1:4132375‑M1/1‑1 (MQ=255)
aggttgcccaggtgaccagcacgccgccaagaacgg > 1:3616706‑M1/1‑1 (MQ=255)
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TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT > REL606/3894961‑3895031
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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