Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,735,9940C→G 6.6% 3.2 ‑9.6 0.0105145ascBcryptic 6‑phospho‑beta‑glucosidase
Rejected: Prediction has biased read strand distribution supporting polymorphism.
Reads supporting (aligned to +/- strand):  new base (8/0):  ref base (26/70):  total (35/70)
Fisher's exact test strand distribution p-value = 7.05e-05
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

Only 100 of 112 total aligned reads displayed.

CACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGTTT  >  REL606/2735959‑2736029
                                     |                                   
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGTGGc                                     <  1:7435561/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc                                     <  1:3234420/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc                                     <  1:6337408/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc                                     <  1:5256865/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc                                     <  1:5561494/36‑1 (MQ=255)
 acaTGGCGAGCATCGAATGGCGG.TG.GAACTTGGGCt                                    >  1:7490456/1‑36 (MQ=37)
 acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt                                    <  1:7478468/36‑1 (MQ=255)
 acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt                                    <  1:526716/36‑1 (MQ=255)
  caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg                                   <  1:7632797/36‑1 (MQ=255)
  caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg                                   <  1:1036269/36‑1 (MQ=255)
   aTGGCGAGCATCGAATGGCGG.TG.GAAATGGGGCTgg                                  >  1:7650688/1‑36 (MQ=37)
   aTGGCGAGCATCGAATGGCGG.TG.AAACTTGGGCttg                                  >  1:2519649/1‑34 (MQ=38)
   aTGGCGAGCATCGAATGGCGG.GG.AAACTGGGGCTgg                                  >  1:7066191/1‑36 (MQ=255)
    tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGGTggg                                 >  1:4970005/1‑35 (MQ=255)
    tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa                                 <  1:5992981/36‑1 (MQ=255)
    tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa                                 <  1:4351067/36‑1 (MQ=255)
    tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa                                 <  1:2830970/36‑1 (MQ=255)
    tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa                                 <  1:1200523/36‑1 (MQ=255)
    cggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa                                 <  1:4614050/35‑1 (MQ=255)
     ggCGAGCATCGAATTGCGG.TG.AAACTGGGGCTGGaa                                <  1:626235/36‑1 (MQ=255)
     ggCGAGCATCGAATGGCGG.TG.GGACTGGGGGTggga                                >  1:4269396/1‑34 (MQ=21)
     ggCGAGCATCGAATGGCGG.TG.GAAATTGGGCGggga                                >  1:3231131/1‑34 (MQ=16)
     ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa                                <  1:4264318/36‑1 (MQ=255)
     ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa                                <  1:5148352/36‑1 (MQ=255)
     ggCGAACATCGAATGGCGG.TG.AAACTGGGGCTGGaa                                <  1:5216009/36‑1 (MQ=255)
      gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa                               <  1:231613/36‑1 (MQ=255)
      gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa                               <  1:5538425/36‑1 (MQ=255)
       cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa                              <  1:1893677/36‑1 (MQ=255)
       cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa                              <  1:7531947/36‑1 (MQ=255)
        gAGCATCGAATGGCGG.TGAAAACTGGGGGGGGaaaa                              >  1:2118797/1‑36 (MQ=16)
        gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa                             <  1:2389999/36‑1 (MQ=255)
        gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa                             <  1:803035/36‑1 (MQ=255)
         aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc                            <  1:5795395/36‑1 (MQ=255)
         aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc                            <  1:6482206/36‑1 (MQ=255)
         aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc                            <  1:3737854/36‑1 (MQ=255)
         aGCATCGAATGGCGG.GG.AAACTGGGGCTGGGAAAAc                            >  1:5875267/1‑36 (MQ=37)
         aGCATCGAATGGCGG.CG.GAACTGGGGGTGGaacaaa                            >  1:924790/1‑35 (MQ=16)
          gCATCGAATGGCGGCGG.AAATTAGGGGTGGgaaaaa                            >  1:5120213/1‑35 (MQ=0)
          gCATCGAATGGCGG.TG.AAACTGGGGGTGGgaaaaag                           >  1:2459014/1‑34 (MQ=25)
          gCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACg                           <  1:4903341/36‑1 (MQ=255)
           cATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGt                          <  1:4749623/36‑1 (MQ=255)
             tctaaTGGCGG.TG.AAACTGGGGCTGGAAAAACGttt                        <  1:6748780/33‑1 (MQ=255)
             tCGAATGGCGG.TG.AAACTGGGTCTGGAAAAACGttt                        <  1:1075479/36‑1 (MQ=255)
             tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt                        <  1:1243439/36‑1 (MQ=255)
             tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt                        <  1:3120013/36‑1 (MQ=255)
             tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt                        <  1:2534714/36‑1 (MQ=255)
              cGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGtttt                       <  1:8334566/36‑1 (MQ=255)
               gAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTc                      <  1:7097397/36‑1 (MQ=255)
                 aTGGCGG.TGAAAAATGGGGTGGGAAAAAATtttttg                     >  1:3807395/1‑34 (MQ=2)
                 aTGGCGG.TG.GAACTGGGGCTGGAAAAACGTTTTCAg                    <  1:3362099/36‑1 (MQ=255)
                 aTGGCGG.TG.AAACAGGGGGTGGGAAAAAGTTTTTAg                    >  1:20032/1‑36 (MQ=16)
                  tGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGt                   <  1:2343083/36‑1 (MQ=255)
                    gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg                 <  1:1882446/36‑1 (MQ=255)
                    gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg                 >  1:1351041/1‑36 (MQ=255)
                    gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg                 >  1:4657050/1‑36 (MQ=255)
                    gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg                 <  1:4251907/36‑1 (MQ=255)
                    gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg                 <  1:1228703/36‑1 (MQ=255)
                    gCGG.TG.AAACTAGGGCTGGAAAAACGTTTTCAGTTg                 <  1:2593161/36‑1 (MQ=255)
                     cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc                <  1:4339652/36‑1 (MQ=255)
                     cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc                <  1:6061069/36‑1 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               <  1:8451297/36‑1 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               >  1:610725/1‑36 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               <  1:4470762/36‑1 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               <  1:2227285/36‑1 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               <  1:4100827/36‑1 (MQ=255)
                      gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg               >  1:1025065/1‑36 (MQ=255)
                       g.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcgc              <  1:2813153/36‑1 (MQ=255)
                         tG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGcgcg             <  1:965159/36‑1 (MQ=255)
                          g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa            >  1:2897027/1‑36 (MQ=255)
                          g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa            <  1:7127807/36‑1 (MQ=255)
                          g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa            >  1:4340649/1‑36 (MQ=255)
                            aaaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGAt           >  1:6997752/1‑36 (MQ=255)
                            aaaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGAt           <  1:3713111/36‑1 (MQ=255)
                             aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCTATg          <  1:2938167/36‑1 (MQ=255)
                             aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATg          <  1:1137977/36‑1 (MQ=255)
                             aaCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATg          >  1:6987714/1‑36 (MQ=255)
                              ccTGGAGCTGGAAAAACGTTTTCAGTTGCGCGAtta         <  1:7802760/35‑3 (MQ=37)
                              aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa         <  1:7557592/36‑1 (MQ=255)
                              aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa         <  1:3843970/36‑1 (MQ=255)
                              aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa         <  1:6541821/36‑1 (MQ=255)
                              aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa         <  1:5406615/36‑1 (MQ=255)
                              aCTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGa         <  1:6973107/36‑1 (MQ=255)
                                tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg       >  1:3501211/1‑36 (MQ=255)
                                tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg       >  1:2821656/1‑36 (MQ=255)
                                tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg       <  1:5569791/36‑1 (MQ=255)
                                tGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACg       <  1:6141000/36‑1 (MQ=255)
                                tGGGGCTGGAAAAACGTTTTCAGTTGAGCGATGACg       >  1:5167844/1‑36 (MQ=255)
                                 ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa      >  1:1949084/1‑36 (MQ=255)
                                 ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa      >  1:1090879/1‑36 (MQ=255)
                                 ggggCTGGAAAAACGTTTTCAGTTGCGCGATGACGa      >  1:5986992/1‑36 (MQ=255)
                                   ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt    <  1:965511/36‑1 (MQ=255)
                                   ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt    >  1:2638983/1‑36 (MQ=255)
                                   ggCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGt    <  1:2101686/36‑1 (MQ=255)
                                    gCTGGAAAAGCGTTTTCAGTTGCGCGATGTCGAGtt   <  1:3320097/36‑1 (MQ=37)
                                    gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt   <  1:4582170/36‑1 (MQ=255)
                                    gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt   >  1:7857836/1‑36 (MQ=255)
                                    gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt   >  1:285920/1‑36 (MQ=255)
                                    gCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGtt   <  1:174343/36‑1 (MQ=255)
                                     cTGGAAAAACGTTTTCAGTTGCGCGATGACGAGttt  >  1:6881014/1‑36 (MQ=255)
                                     cTGGAAAAACGTTTTCAGTTGCGCGATGACGAGttt  >  1:3273299/1‑36 (MQ=255)
                                     |                                   
CACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGATGACGAGTTT  >  REL606/2735959‑2736029

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG