Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,201,949 | 0 | G→A | 4.6% | 0.9 ‑0.5 ‑0.1 | 65 | 611 | iclR | DNA‑binding transcriptional repressor |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/2): ref base (35/27): total (36/29) | ||||||||||
Fisher's exact test strand distribution p-value = 5.82e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.47e-01 |
TTCCTCATCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGAC > REL606/4201915‑4201984
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ttCCTCATCGTCAAATGAATAACCCCGTTTGCGCGt < 1:5973208/36‑1 (MQ=255)
ttCCTCATCGTCAAATGAATAACCCCGTTTGCGCGt < 1:3970808/36‑1 (MQ=255)
tCCTCATCGTCAAATGAATAACCCCGTTTGCGCGtt < 1:3963820/36‑1 (MQ=255)
ccTCATCGTCAAATGAATAACCCCGTTTGCGCGttt < 1:5564362/36‑1 (MQ=255)
ccTCATCGTCAAATGAATAACCCCGTTTGCGCGttt < 1:2057925/36‑1 (MQ=255)
cTCATCGTCAAATGAATAACCCCGTTTGCGCGTTTg > 1:6673844/1‑36 (MQ=255)
cTCATCGTCAAATGAATAACCCCGTTTGCGCGTTTg < 1:6650682/36‑1 (MQ=255)
cTCATCGTCAAATGAATAACCCCGTTTGCGCGTTTg < 1:6497371/36‑1 (MQ=255)
tCATCGTCAAATGAATAACCCCGTTTGCGCGTTTgg < 1:1092980/36‑1 (MQ=255)
cATCGTCAAATGAATAACCCCGTTTGCGCGTTTggg > 1:5144464/1‑36 (MQ=255)
aTCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGc > 1:6051900/1‑36 (MQ=255)
aTCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGc > 1:635228/1‑36 (MQ=255)
aTCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGc < 1:2631010/36‑1 (MQ=255)
aTCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGc < 1:2528697/36‑1 (MQ=255)
aTCGTCAAATGAATAACCCCGTTTGCGCATTTGGGc < 1:7176346/36‑1 (MQ=255)
cGTCAAATGAATAACCCCGTTTGCGCGTTTGGGCga > 1:7276425/1‑36 (MQ=255)
gTCAAATGAATAACCCCGTTTGCGCGTTTGGGCgag > 1:6850678/1‑36 (MQ=255)
gTCAAATGAATAACCCCGTTTGCGCGTTTGGGCgag > 1:2597838/1‑36 (MQ=255)
tCAAATGAATAACCCCGTTTGCGCGTTTGGGCgaga > 1:6101835/1‑36 (MQ=255)
tCAAATGAATAACCCCGTTTGCGCGTTTGGGCgaga > 1:6969308/1‑36 (MQ=255)
tCAAATGAATAACCCCGTTTGCGCGTTTGGGCgaga < 1:3766034/36‑1 (MQ=255)
cAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGAt > 1:2753704/1‑36 (MQ=255)
cAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGAt < 1:553847/36‑1 (MQ=255)
cAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGAt < 1:5404249/36‑1 (MQ=255)
cAAATGAATAACCCCGTTTGAGCGTTTGGGCGAGAt > 1:6961299/1‑36 (MQ=255)
aaaTGAATAACCCCGTTTGCGCGTTTTGGCGAGAtc < 1:3823521/36‑1 (MQ=255)
aaaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtc > 1:1468701/1‑36 (MQ=255)
aaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtct > 1:3276533/1‑36 (MQ=255)
aaTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtct > 1:1471927/1‑36 (MQ=255)
aTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt > 1:4295551/1‑36 (MQ=255)
aTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt > 1:632328/1‑36 (MQ=255)
aTGAATAACCCCGTTTGCGCGTTTGGGCGAGAtctt > 1:1477813/1‑36 (MQ=255)
aTGAATAACCCCGCTTGCGAGTTTGGGCGAGAtctt > 1:2652046/1‑36 (MQ=37)
tGAATAACCCCGTTTGCGCGTTTGGGCGAGAtcttc > 1:6659288/1‑36 (MQ=255)
gAATAACCCCGTTTGCGCGTTTGGGCGAGAtcttct > 1:225544/1‑36 (MQ=255)
aaTAACCCCGTTTGCGCGTTTGGGCGAGATcttctt < 1:288061/36‑1 (MQ=255)
aTACCCCCGTTTGCGCGTTTGGGCGAGATCTTCttt < 1:6064980/36‑1 (MQ=255)
aTAACCCCGTTTGCGCGTTTGGGCGGGATCTTCttt < 1:5131242/36‑1 (MQ=255)
aTAACCCCGTTTGCGCGTTTGGGCGAGATCTTCttt < 1:2912403/36‑1 (MQ=255)
aTAACCCCGTTTGCGCGTTTGGGCGAGATCTTCttt < 1:274271/36‑1 (MQ=255)
aTAACCCCGTTTGCGCGATTGGGCGAGATCTTCttt > 1:2140367/1‑36 (MQ=255)
aTAACCCCGTTTGCGCATTTGGGCGAGATCTTCttt < 1:7226467/36‑1 (MQ=255)
tAACCCCGTTTGCGCGTTTGGGCGAGATCTTCtttt > 1:2783735/1‑36 (MQ=255)
aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa > 1:4034785/1‑36 (MQ=255)
aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa > 1:3571201/1‑36 (MQ=255)
aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTaa < 1:3303667/36‑1 (MQ=255)
cccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAAt > 1:5553947/1‑36 (MQ=255)
ccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATg < 1:324623/36‑1 (MQ=255)
cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc > 1:4914211/1‑36 (MQ=255)
cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc > 1:4496631/1‑36 (MQ=255)
cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGc < 1:1572129/36‑1 (MQ=255)
gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGca < 1:668803/36‑1 (MQ=255)
tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcac < 1:6866736/36‑1 (MQ=255)
tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcac > 1:2903892/1‑36 (MQ=255)
tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcac > 1:4171486/1‑36 (MQ=255)
tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcac < 1:6625252/36‑1 (MQ=255)
ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcaca < 1:1729500/36‑1 (MQ=255)
ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcaca < 1:1665772/36‑1 (MQ=255)
ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcaca > 1:3389059/1‑36 (MQ=255)
ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGcaca > 1:1506248/1‑36 (MQ=255)
tGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAg > 1:3317562/1‑36 (MQ=255)
gcgcGTTTGGGCGAGATCTTCTTTTAAATGCACAgg > 1:2294869/1‑36 (MQ=255)
gcgcGTTTGGGCGAGATCTTCTTTTAAATGCACAgg > 1:2010491/1‑36 (MQ=255)
gcgcGGTTGGGCGAGATCTTCTTTTAAATGCACAgg > 1:2698344/1‑36 (MQ=255)
gcgcATTTGGGCGAGATCTTCTTTTAAATGCACAgg > 1:5847048/1‑36 (MQ=255)
cgcgTTTGGGCGAGATCTTCTTTTAAATGCACAGga > 1:1527408/1‑36 (MQ=255)
cgcgTTTGGGCGAGATCTTCTTTTAAATGCACAGga < 1:4571004/36‑1 (MQ=255)
gcgTTTGGGCGAGATCTTCTTTTAAATGCACAGgag > 1:3356780/1‑36 (MQ=255)
gcgTTTGGGCGAGATCTTCTTTTAAATGCACAGgag < 1:6810453/36‑1 (MQ=255)
gTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGac > 1:5426999/1‑36 (MQ=255)
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TTCCTCATCGTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGAC > REL606/4201915‑4201984
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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