Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 92.9% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)51 (0.900) 31/64 NT 89.5% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 6 (0.100)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =2 (0.040)54 (0.960) 37/64 NT 96.4% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACC.................................  >  REL606/590437‑590471
..................................ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGG  <  REL606/1821527‑1821493
                                                                      
   tTTTAACTGTCCAACTTTTTGGGGTCAGTACACCAT                                 <  1:2806383/35‑1 (MQ=1)
    TTTAACTGTCCAACTTTTTGGGGTCAGTACACCATG                                >  1:6770482/1‑36 (MQ=1)
    TTTAACTGTCCAACTTTTTGGGGTCAGTACACCATG                                >  1:142557/1‑36 (MQ=1)
    TTTAACTGTCCAACTTTTTGGGGTCAGTACACCATG                                <  1:487499/36‑1 (MQ=1)
    TTTAACTGTCCAACTTTTTGGGGTCAGTACACCATG                                >  1:8212271/1‑36 (MQ=1)
    TTTAACTGTCCAACTTTTTGGGGTCAGTACACCATG                                >  1:2317534/1‑36 (MQ=1)
     TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                               <  1:1549133/36‑1 (MQ=1)
     TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                               <  1:7545518/36‑1 (MQ=1)
     TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                               >  1:8361593/1‑36 (MQ=1)
     TTAACTGTCCAACTTTTTGGGGTCAGTACACCATGG                               <  1:2423211/36‑1 (MQ=1)
      TAACTGTCCAACTTTTTGGGGTCAGTACACCATGGA                              >  1:6518121/1‑36 (MQ=1)
      TAACTGTCCAACTTGTTGGGGTCAGTACACCATGGA                              >  1:3311355/1‑36 (MQ=0)
       AACTGTCCAACTTTTTGGGGTCAGTACACCATGGAG                             >  1:6208939/1‑36 (MQ=1)
        ACTGTCCAACTTTTTGGGGTCAGTACACCATGGAGC                            >  1:2351307/1‑36 (MQ=1)
        ACTGTCCAACTTTTTGGGGTCAGTACACCATGGAGC                            <  1:3533066/36‑1 (MQ=1)
         CTGTCCAACTTTTTGGGGTCAGTACACCATGGAGCC                           >  1:6026328/1‑36 (MQ=1)
          TGTCCAACTTTTTGGGGTCAGTACACCATGGAGCCA                          >  1:1379075/1‑36 (MQ=1)
           GTCCAACTTTTTGGGGTCAGTACACCATGGAGCCAA                         >  1:1602284/1‑36 (MQ=1)
            TCCAACTTTTTGGGGTCAGTACACCATGGAGCCAAT                        >  1:69965/1‑36 (MQ=1)
            TCCAACTTTTTGGGGTCAGTACACCATGGAGCCAAT                        >  1:3239650/1‑36 (MQ=1)
            TCCAACTTTTTGGGGTCAGTACACCATGGAGCCAAT                        >  1:6000936/1‑36 (MQ=1)
              CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                      >  1:66789/1‑36 (MQ=32)
              CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                      >  1:5492795/1‑36 (MQ=32)
              CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                      >  1:5233535/1‑36 (MQ=32)
              CAACTTTTTGGGGTCAGTACACCATGGAGCCAATAC                      <  1:5203168/36‑1 (MQ=32)
               AACTTTTTGGGGTCAGTACACCATGGAGCCAATACC                     <  1:3277937/36‑1 (MQ=35)
               AACTTTTTGGGGTCAGTACACCATGGAGCCAATACC                     >  1:2176114/1‑36 (MQ=35)
               AACTTTTTGGGGTCAGTACACCATGGAGCCAATACC                     >  1:7984165/1‑36 (MQ=35)
               AACTTTTTGGGGTAAGTACACCATGGAGCCAATACC                     <  1:4854135/36‑1 (MQ=255)
                 CTTTTTGGGGTCAGTACACCATGGAGCCAATACCTT                   >  1:2752268/1‑36 (MQ=38)
                   TTTTGGGGTCAGTACACCATGGAGCCAATACCTTTA                 <  1:3915687/36‑1 (MQ=38)
                   TTTTGGGGTCAGTACACCATGGAGCCAATACCTTTA                 <  1:1290624/36‑1 (MQ=38)
                    TTTGGGGTCAGTACACCATGGAGCCAATACCTTTAA                <  1:7462325/36‑1 (MQ=40)
                    TTTGGGGTCAGTACACCATGGAGCCAATACCTTTAA                <  1:1789982/36‑1 (MQ=40)
                    TTTGGGGTCAGTACACCATGGAGCCAATACCTTTAA                >  1:3264647/1‑36 (MQ=40)
                       GGGGTCAGTACACCATGGAGCCAATACCTTTAAAGC             >  1:2631667/1‑36 (MQ=38)
                        GGGTCAGTACACCATGGAGCCAATACCTTTAAAGCA            <  1:6259013/36‑1 (MQ=38)
                        GGGTCAGTACACCATGGAGCCAATACCTTTAAAGCA            <  1:2648941/36‑1 (MQ=38)
                        GGGTCAGTACACCACGGAGCCAATACCTTTAAAGCA            <  1:6685230/36‑1 (MQ=255)
                         GGTCAGTACACCATGGAGCCAATACCTTTATAGCAA           >  1:2290399/1‑36 (MQ=255)
                         GGTCAGTACACCATGGAGCCAATACCTTTAAAGCAA           >  1:2886011/1‑36 (MQ=38)
                          GTCAGTACACCATGGAGCCAATACCTTTAAAGCAAA          <  1:1450697/36‑1 (MQ=38)
                           TCAGTACACCATGGAGCCAATACCTTTAAAGCAAAC         >  1:6686219/1‑36 (MQ=38)
                            CAGTACACCATGGAGCCAATACCTTTAAAGCAAACA        >  1:4293151/1‑36 (MQ=38)
                              GTACACCATGGAGCCAATACCTTTAAAGCAAACATG      <  1:4727906/36‑1 (MQ=38)
                              GTACACCATGGAGCCAATACCTTTAAAGCAAACATG      <  1:8385343/36‑1 (MQ=38)
                               TACACCATGGAGCCAATACCTTTAAAGCAAACATGG     <  1:6610875/36‑1 (MQ=35)
                               TACACCATGGAGCCAATACCTTTAAAGCAAACATGG     >  1:882895/1‑36 (MQ=35)
                                ACACCATGGAGCCAATACCTTTAAAGCAAACATGGA    >  1:3542250/1‑36 (MQ=32)
                                ACACCATGGAGCCAATACCTTTAAAGCAAACATGGA    >  1:1834476/1‑36 (MQ=32)
                                 CACCATGGAGCCAATACCTTTAAAGCAAACATGGAG   <  1:5487475/36‑1 (MQ=1)
                                                                      
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACC.................................  >  REL606/590437‑590471
..................................ACCATGGAGCCAATACCTTTAAAGCAAACATGGAGG  <  REL606/1821527‑1821493

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG