Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 209,699 | A→G | 22.5% | K578E (AAG→GAG) | dnaE → | DNA polymerase III subunit alpha |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 209,699 | 0 | A→G | 22.5% | 5.3 ‑2.8 0.0 | 31 | 1732 | dnaE | DNA polymerase III subunit alpha |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (12/10): total (20/11) | ||||||||||
Fisher's exact test strand distribution p-value = 6.25e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACTGGGCGCTGGAGATGATCAACAAGCGGCGGGCGAAGAATGGCGAGCCGCCGCTGGATATCGCCGCGATC > REL606/209664‑209734
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aCTGGGCGCTGGAGATGATCAACAAGCGGCGGGCga < 1:7082495/36‑1 (MQ=255)
cTGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaa < 1:1877095/36‑1 (MQ=255)
tGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaag < 1:2131031/36‑1 (MQ=255)
tGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaag < 1:4676734/36‑1 (MQ=255)
gggCGCTGGAGATGATCAACAAGCGGCGGGCgaaga < 1:195148/36‑1 (MQ=255)
tGGAGATGATCAACAAGCGGCGGGGGGAGAAAgggg > 1:1891606/1‑34 (MQ=25)
ggAGATGATCAACAAGCGGCGGGGGGAGAATggggg > 1:1086330/1‑33 (MQ=25)
ggAGATGATCAACAAGCGGCGGGCGAAGAATGGCGa < 1:7463373/36‑1 (MQ=255)
gagaTGAACAACAAGCGGCGGGCGAAGAATGGCGAg < 1:4926844/36‑1 (MQ=255)
agaTGATCAACAAGCGGCGGGCGAAGAATGGCGAgc < 1:4360282/36‑1 (MQ=255)
tgatCAACAAGCGGCGGGCGAAGAATGGCGAgccgc > 1:2436327/1‑36 (MQ=255)
gatCAACAAGCGGCGGGGGGAGGAAGGCGAgacggc > 1:4396990/1‑34 (MQ=12)
gatCAACAAGCGGCGGGCGGAGAAAGGGGAgcggcc > 1:4813057/1‑36 (MQ=16)
gatCAACAAGCGGCGGGCGCAGAATGGCGAgccgcc < 1:1863538/36‑1 (MQ=255)
atCAACAAGCCGCGGGAGGACAATTGCCAgccaccc > 1:442696/1‑35 (MQ=0)
tCAACAAGCGGCGGGCGAAGAATGGCGAGCcgccgc > 1:2268331/1‑36 (MQ=255)
caacaaGCGGCGGGCGGAGAAAGGCGAGgcgccggg > 1:4765826/1‑34 (MQ=25)
caacaaGCGGCGGGCGCAGAATGGCGAGGcgccgcc > 1:7547777/1‑35 (MQ=25)
caacaaGCGGCGGGCGAAGAATGGGGAGGAGCCGCt > 1:2742657/1‑36 (MQ=37)
aacaaGCGGCGGGGGGAGAATGGCGAGCCGCCGCTg > 1:5866200/1‑36 (MQ=25)
acaaGCGGCGGGCGAAGAATGGCGGGCCGCCGCTgg > 1:3316020/1‑36 (MQ=255)
caaGCGGCGGGCGAAGAATGGTGCGCCGCCGCTGGa < 1:5263316/36‑1 (MQ=37)
aaGCGGCGGGCGAAGAATGGCGAGCCGCCGCTgggt > 1:3163138/1‑34 (MQ=255)
aaGCGGCGGGCGAAGAATGGCGAGCCGCCGCTGGat < 1:3166815/36‑1 (MQ=255)
gcggcgGGCGAAGAATGGCGAGCCGCCGCTGGatat < 1:6048149/36‑1 (MQ=255)
cggcggGCGAAGAATGGCGAGCCGCCGCGGGGTATc > 1:1011690/1‑36 (MQ=37)
cggaggGCAAAGAATGGCGAGCCGCCGCTGGATATc < 1:4988342/36‑1 (MQ=25)
ggcgggcgAAGAATGGCGAGCCGCCGCTGGATATcg < 1:5939050/36‑1 (MQ=255)
gcgggcgAAGAATGGCGAGCCGCCGCTGGATATcgc < 1:3945851/36‑1 (MQ=255)
gcgggcgAAGAATGGCGAGCCGCCGCTGGATATcgc < 1:6478028/36‑1 (MQ=255)
gggcgAAGAATGGCGAGCCGCCGCTGGATATcgccg > 1:470436/1‑36 (MQ=255)
gggcgAAGAATGGCGAGCCGCCGCTGGATATcgcag > 1:6975673/1‑34 (MQ=255)
ggcgAAGAATGGCGAGCCGCCGCTGGATATcgccgc > 1:6479942/1‑36 (MQ=255)
gcgAAGAATGGCGAGCCGCCGCTGGATATCGCcgcg > 1:4503375/1‑36 (MQ=255)
gcgAAGAATGGCGAGCCGCCGCTGGATATCGCcgcg > 1:4231002/1‑36 (MQ=255)
cgAAGAATGGCGAGCCGCCGCTGGATATCGCCGCGa > 1:197464/1‑36 (MQ=255)
gaagaaTGGCGAGCCGCCGCCGGATATCGCCGCGAt > 1:2018725/1‑36 (MQ=255)
gaagaaTGGCGAGCCGACGCTGGATATCGCCGAGaa > 1:2559290/1‑35 (MQ=25)
gaagaaTGGCGAGCAGCCGCTGGATATCGACGCGAt > 1:524135/1‑36 (MQ=37)
aagagTGGCGACCCGCCGCTGGATATCGCCGCGATc < 1:387579/36‑1 (MQ=21)
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ACTGGGCGCTGGAGATGATCAACAAGCGGCGGGCGAAGAATGGCGAGCCGCCGCTGGATATCGCCGCGATC > REL606/209664‑209734
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 12 ≤
ATCG
< 25 ≤
ATCG
< 37 ≤
ATCG
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