New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 103607332 (0.580)13 (0.240) 8/62 NT 29.2% intergenic (+45/+31) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2540943 31 (0.500)coding (38/1290 nt) uraA uracil transporter

GTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAG  >  REL606/1036038‑1036108
                                   |                                   
gTCAGTTCAATTTACTAAATGCAAAAAAAACCCCGC                                     <  1:5737080‑M1/36‑1 (MQ=255)
 tCAGTTCAATTTACTAAAGGCAAAAAAAACCCCgca                                    <  1:5922808/36‑1 (MQ=255)
   aGTTCAATTTACTAAAGGCAAAAAAAACCCCgcagc                                  <  1:7350833/36‑1 (MQ=255)
     ttCAATTTACTAAAGGCAAAAAAAACCCCGcagcag                                >  1:1110919/1‑36 (MQ=255)
      tCAATTTACTAAAGGCAAAAAAAACCCCGCagcagc                               <  1:1087676/36‑1 (MQ=255)
       cAATTTACTAAAGCCAAAAAAATCCCCGCAGCCGCg                              <  1:1054568/36‑1 (MQ=25)
        aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                             >  1:8414695/1‑36 (MQ=255)
        aaTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCgg                             >  1:1019500/1‑36 (MQ=255)
         aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                            >  1:8318273/1‑36 (MQ=255)
         aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                            <  1:5669459/36‑1 (MQ=255)
         aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                            <  1:1223689/36‑1 (MQ=255)
         aTTTACTAAAGGCAAAAAAAACCCCGCAGCAGCggg                            <  1:145060/36‑1 (MQ=255)
          tttACTAAAGGCAAAAAAAACCCCGCAGCAGCgggg                           >  1:4808213/1‑36 (MQ=255)
           ttACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGt                          >  1:7782144/1‑36 (MQ=255)
            tACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGtt                         <  1:835745/36‑1 (MQ=255)
             aCTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGttt                        <  1:2696691/36‑1 (MQ=255)
                  aGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTa                   >  1:4578511/1‑36 (MQ=255)
                   ggCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAc                  >  1:5137216/1‑36 (MQ=255)
                     taaaaaaaccCCCGCcacttttacagacaatcccgc                <  1:1708648‑M1/35‑22 (MQ=255)
                     gaaaaaaaacCCCGCcacttttacagacaatcccgc                <  1:2306861‑M1/35‑22 (MQ=255)
                      aaaaaaaaCCCCGCcacttttacagacaatcccgct               <  1:1583209‑M1/36‑23 (MQ=255)
                       aaaaaaaCCCCGCcacttttacagacaatcccgctt              <  1:7486222‑M1/36‑24 (MQ=255)
                        aaaaacCCCCGCcacttttacagacaatcccgctta             <  1:2930571‑M1/36‑25 (MQ=255)
                          aaaaCCCCGCcacttttacagacaatcccgcttagt           <  1:1238290‑M1/36‑27 (MQ=255)
                           aaaCCCCGCcgcttttacagacaatcccgcttagtt          <  1:5021735‑M1/36‑28 (MQ=255)
                           aaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgag          <  1:399294/36‑1 (MQ=255)
                           aaaCACCGCcacttttacagacaatcccgcttagtt          <  1:3720414‑M1/36‑28 (MQ=255)
                            aaCCCCGCcacttttacagacaatcccgcttagttt         <  1:2443193‑M1/36‑29 (MQ=255)
                            aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga         >  1:7243584/1‑36 (MQ=255)
                            aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga         >  1:1572981/1‑36 (MQ=255)
                            aaCCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga         >  1:2621590/1‑36 (MQ=255)
                            aaCACCGCcacttttacagacaatcccgcttagttt         <  1:6808376‑M1/36‑29 (MQ=255)
                             aCCCCGCcacttttacagacaatcccgcttagtttg        <  1:78936‑M1/36‑30 (MQ=255)
                             aCCCCGCcacttttacagacaatcccgcttagtttg        <  1:2327320‑M1/36‑30 (MQ=255)
                             aCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGaa        >  1:7812945/1‑36 (MQ=255)
                             aCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGaa        <  1:2960317/36‑1 (MQ=255)
                              ccccGCcacttttacagacaatcccgcttagtttgc       <  1:4790121‑M1/36‑31 (MQ=255)
                              ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc       >  1:1129566/1‑36 (MQ=255)
                              ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc       >  1:6018797/1‑36 (MQ=255)
                              ccccGCAGCAGCGGGGTTTTTCTACCAGACGAGAAc       >  1:3259951/1‑36 (MQ=255)
                                ccGCcacttttacagacaatcccgcttagtttgcaa     <  1:6355623‑M1/36‑33 (MQ=255)
                                 cGCcatttttacagacaatcccgcttagtttgcaac    <  1:1188834‑M1/36‑34 (MQ=255)
                                 cGCcacttttacagacaatcccgcttagtttgcaac    <  1:5558580‑M1/36‑34 (MQ=255)
                                 cGCcacttttacagacaatcccgcttagtttgcaac    >  1:1822344‑M1/1‑3 (MQ=255)
                                 cGCcacttttacagacaatcccgcttagtttgcaac    <  1:4970353‑M1/36‑34 (MQ=255)
                                 cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTa    >  1:6433505/1‑36 (MQ=255)
                                 cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTa    >  1:2651434/1‑36 (MQ=255)
                                 cGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTa    >  1:1988629/1‑36 (MQ=255)
                                 cGCAGCAGCGGGGTTCTTCTACCAGACGAGAACGTa    >  1:1146563/1‑36 (MQ=38)
                                  gcagcaGCGGGGTTTTTCTACCAGACGAGAACTTaa   <  1:5916790/36‑1 (MQ=255)
                                  gcagcaGCGGGGTTTTTCTACCAGACGAGAACTTaa   <  1:6000835/36‑1 (MQ=255)
                                  gCcacttttacagacaatcccgcttagtttgcaaca   <  1:7886259‑M1/36‑35 (MQ=255)
                                   ccacttttacagacaatcccgcttagtttgcaacat  <  1:4574812‑M1/36‑36 (MQ=255)
                                   ccacttttacagacaatcccgcttagtttgcaacat  <  1:4605185‑M1/36‑36 (MQ=255)
                                   ccacttttacagacaatcccgcttagtttgcaacat  <  1:7326460‑M1/36‑36 (MQ=255)
                                   cagcagCGGGGTTTTTCTACCAGACGAGAACTTAAg  >  1:2082099/1‑36 (MQ=255)
                                   cagcagCGGGGTTTTTCTACCAGACGAGAACTTAAg  <  1:2749215/36‑1 (MQ=255)
                                   cagcagCGGGGTTTTTCTACCAGACGAGAACTTAAg  >  1:1290593/1‑36 (MQ=255)
                                   |                                   
GTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAG  >  REL606/1036038‑1036108

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG