Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,732,670 | 0 | C→A | 11.7% | 6.1 ‑17.2 0.0 | 141 | 296 | hydN | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/21): ref base (79/40): total (80/61) | ||||||||||
Fisher's exact test strand distribution p-value = 3.29e-08 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 144 total aligned reads displayed.
CCGGACGTACCACCACTTCCATCGCGCCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAACGT > REL606/2732635‑2732705
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ccGGACGTACCACCACTTCCATCGCGCCATACGGGc > 1:6534986/1‑36 (MQ=255)
cGGACGTTCCACCACTTCCATCGCGCCATACGGGCa > 1:2423160/1‑36 (MQ=255)
cGGACGTACCACCACTTCCATCGCGCCATACGGGCa < 1:5752578/36‑1 (MQ=255)
ggACGTACCACCACTTCCATCGCGCCATACGGGCaa > 1:7022823/1‑36 (MQ=255)
ggACGTACCACCACTTCCATCGCGCCATACGGGCaa > 1:46695/1‑36 (MQ=255)
gaagTACCACCACTTCCATCGCGCCATACGGGCAAg > 1:5567185/4‑36 (MQ=255)
gACGTACCACCACTTCCATCGCGCCATACGGGCAAg > 1:5810179/1‑36 (MQ=255)
aCGTACCACCACTTCCATCGCGCCATACGGGCAAGc < 1:6062307/36‑1 (MQ=255)
cGTACCACCACTTCCATCGCGCCATACGGGCAAGcc > 1:1042728/1‑36 (MQ=255)
cGTACCACCACTTCCATCGCGCCATACGGGCAAGcc > 1:3855963/1‑36 (MQ=255)
cGTACCACCACTTCCATCGCGCCATACGGGCAAGcc > 1:238288/1‑36 (MQ=255)
gTACCACCACTTCCATCGCGCCATACGGGCAAGCca < 1:4782091/36‑1 (MQ=255)
tACCACCACTTCCATCGCGCCATACGGGCAAGCcac < 1:8436353/36‑1 (MQ=255)
tACCACCACTTCCATCGCGCCATACGGGCAAGCcac > 1:5835284/1‑36 (MQ=255)
tACCACCACTTCCATCGCGCCATACGGGCAAGCcac < 1:3067381/36‑1 (MQ=255)
tACCACCACTTCCATCGCGCCATACGGGCAAGCcac > 1:2882855/1‑36 (MQ=255)
tACCACCACTTCCATCGCGCCATACGGGCAAGCcac > 1:1033782/1‑36 (MQ=255)
cccaccaCTCCCATCGCGCAAAACGGGCAAGCcaca < 1:1484482/35‑1 (MQ=18)
accaccACTTCCATCGCGCCATACGGGCAAGCcaca > 1:4845364/1‑36 (MQ=255)
ccaccaCTTCCATCGCGCCATACGGGCAAGCCACaa > 1:2828817/1‑36 (MQ=255)
caccacTTCCATCGCGCCATACGGGCAAGCCACAAc > 1:6194607/1‑36 (MQ=255)
accacTTCCATCGCGCCATACGGGCAAGCCACAACg > 1:6036870/1‑36 (MQ=255)
accacTTCCATCGCGCCATACGGGCAAGCCACAACg > 1:2216094/1‑36 (MQ=255)
ccTTCCACCGCGCAATACGTTCAAGCCACAACGCAg < 1:2937732/35‑1 (MQ=16)
acTTCCATCGCGCCATACGGGCAAGCCACAACGCAg > 1:5117246/1‑36 (MQ=255)
acTTCCATCGCGCCATACGGGCAAGCCACAACGCAg > 1:4690963/1‑36 (MQ=255)
cTTCCATCGCGCCATACGGGCAAGCCACAACGCAgg > 1:5934852/1‑36 (MQ=255)
cTTCCATCGCGCCATACGGGCAAGCCACAACGCAgg < 1:3925665/36‑1 (MQ=255)
cTTCCATCGCGCAATACGGGCAAGCCACAACGCAgg < 1:4899721/36‑1 (MQ=255)
ttCCATCGCGCCATAGGGGCAAGCCACAACGCAGGt < 1:6726823/36‑1 (MQ=255)
ttCCATCGCGCAATCCGGGCAAGCCACAACGCAGGt < 1:673005/36‑1 (MQ=37)
ttCCACCGCGCCATACGGGCAAGCCACAACGCAGGt < 1:2528178/36‑1 (MQ=255)
tcccATCGCGCAATACGGGAAAGCCACAACGCAGGt < 1:2446559/34‑1 (MQ=25)
tCCATCGCGCCATACGGGCAAGCCACAACGCAGGtt > 1:4602187/1‑36 (MQ=255)
tCCATCGCGCCATACGGGCAAGCCACAACGCAGGtt > 1:4180646/1‑36 (MQ=255)
tCCATCGCGCCATACGGGCAAGCCACAACGCAGGtt > 1:1058331/1‑36 (MQ=255)
ccATCGCGCCATACGGGCAAGCCACAACGCAGGttt > 1:5753149/1‑36 (MQ=255)
ccATCGCGCCATACGGGCAAGCCACAACGCAGGttt < 1:2615518/36‑1 (MQ=255)
ccACCGCGCAATACGGGCAAGCCACAACGCAGGttt < 1:6496570/36‑1 (MQ=37)
cATCGCGCCATACGGGCAAGCCACAACGCCGGtttt > 1:5502185/1‑36 (MQ=255)
cATCGCGCCATACGGGCAAGCCACAACGCAGGtttt > 1:7956824/1‑36 (MQ=255)
cATCGCGCCATACGGGCAAGCCACAACGCAGGtttt > 1:4716332/1‑36 (MQ=255)
cATCGCGCCATACGGGCAAGCCACAACGCAGGtttt > 1:3948763/1‑36 (MQ=255)
ctCGCGCAATAGGGGCAAGCCACAACGCAGGTTTTg < 1:645221/35‑1 (MQ=37)
agcgccCCAAACGGGAAAGCCACAACGCAGGTTTTg < 1:3822959/34‑1 (MQ=21)
aTCGCGCCATACGGGCCCGCCACCACGCACGCTTTg > 1:3649387/1‑36 (MQ=16)
aTCGCGCCATACGGGCAAGCCACAACGCAGGTTTTg > 1:3453707/1‑36 (MQ=255)
aTCGCGACATACGGGCAAGCCACAACGCAGGTTTTg > 1:7646886/1‑36 (MQ=255)
tCGCGCCATACGGGCAAGCCACAACGCAGGTTTTGc > 1:1894010/1‑36 (MQ=255)
tCGCGCCATACGGGCAAGCCACAACGCAGGTTTTGc > 1:8041815/1‑36 (MQ=255)
tCGCGCCATACGGGCAAGCCACAACGCAGGTTTTGc > 1:5233391/1‑36 (MQ=255)
tCGCGCCATAAGGGAAAGCCACAACGCAGGTTTTGc > 1:5417998/1‑36 (MQ=37)
ccgcaCCATCCGGGCAAGCCACAACGCAGGTTTTGc < 1:538536/35‑1 (MQ=37)
gcgcCATACGGGCAAGCCACAACGCAGGTTTTGCaa > 1:6164620/1‑36 (MQ=255)
gcgcCATACGGGCAAGCCACAACGCAGGTTTTGCaa > 1:1093165/1‑36 (MQ=255)
gcgcCATACGGGCAAGCCACAACGCAGGTTTTGCaa > 1:2729688/1‑36 (MQ=255)
gcgcCATACGGGCAAGCCACAACGCAGGCTTTGCaa > 1:8110286/1‑36 (MQ=255)
gcgcAATACGGGAAAGCCACAACGCAGGTTTTGCaa < 1:1467753/36‑1 (MQ=37)
cgcCATACGGGCAAGCCTCAACGCAGGTTTTGCAAc < 1:2134108/36‑1 (MQ=255)
cgcCATACGGGCAAGCCACAACGCAGGTTTTGCAAc > 1:1129673/1‑36 (MQ=255)
cgcCACGCGGGAAAACCACAACGCAGGTTTTGCAAc < 1:541712/36‑1 (MQ=16)
gcaaTACGGGCAAGCCACAACGCAGGTTTTGCAAcc < 1:7330819/33‑1 (MQ=255)
gcCATACGGGCAAGCCACAACGCAGGTTTTGCAAcc > 1:6317285/1‑36 (MQ=255)
gcCATACGGGCAAGCCACAACGCAGGTTTTGCAAcc > 1:8018088/1‑36 (MQ=255)
gcCATACGGGCAAGCCACAACGCAGGTTTTGCAAcc > 1:3748152/1‑36 (MQ=255)
gcCATACGGAAAAGCCACAACGCAGGTTTTGCAAcc < 1:3574326/36‑1 (MQ=37)
ccATACGGGCAAGCCACAACGCAGGTTTTGCAACCa > 1:5320589/1‑36 (MQ=255)
ccATACGGGCAAGCCACAACGCAGGTTTTGCAACCa > 1:1554157/1‑36 (MQ=255)
ccATACGGGCAAGCCACAACGCAGGTTTTGCAACCa > 1:1823725/1‑36 (MQ=255)
ccATACGGGAAAGCCACAACGCAGGTTTTGCAACCa < 1:4993816/36‑1 (MQ=255)
caaTACGGGAAAGCCACAACGCAGGTTTTGCAACCa < 1:6959251/34‑1 (MQ=37)
caaTACGGGAAAGCCACAACGCAGGTTTTGCAACCa < 1:6655142/34‑1 (MQ=37)
cATACGGGCAAGCCACAACGCAGGTTTTGCAACCaa > 1:7214556/1‑36 (MQ=255)
cATACGGGCAAGCCACAACGCAGGTTTTGCAACCaa > 1:5239787/1‑36 (MQ=255)
cATACGGGCAAGCCACAACGCAGGTTTTGCAACCaa > 1:2245643/1‑36 (MQ=255)
cATACGGGAAAGCCACAACGCAGGTTTTGCAACCaa < 1:212673/36‑1 (MQ=255)
aaTACGGGCAAGCCACAACGCAGGTTTTGCAACCaa < 1:6692763/35‑1 (MQ=255)
aaaCGGACAAGCCACAACGCAGGTTTTGCAACCAAt < 1:4793806/34‑1 (MQ=37)
aTACGGGCAAGCCACAACGCAGGTTTTGCAACCAAt > 1:5348250/1‑36 (MQ=255)
aTACGGGCAAGCCACAACGCAGGTTTTGCAACCAAt > 1:3299505/1‑36 (MQ=255)
aTACGGGAAAGCCACAACGCAGGTTTTGCAACCAAt < 1:3550132/36‑1 (MQ=255)
aTACGAGAAAGCCACAACGCAGGTTTTGCAACCAAt < 1:1243082/36‑1 (MQ=37)
ttcGGGAAAGCCACAACGCAGGTTTTGCAACCAATg < 1:323408/34‑1 (MQ=37)
tACGGGCAAGCCACAACGCAGGTTTTGCAACCAATg > 1:5392392/1‑36 (MQ=255)
tACGGGCAAGCCACAACGCAGGTTTTGCAACCAATg > 1:4517096/1‑36 (MQ=255)
aaCGGGCAAGCCACAACGCAGGTTTTGCAACCAATg < 1:7469643/35‑1 (MQ=255)
aCGGGCAAGCCACAACGCAGGTTTTGCAACCAATGc < 1:2300081/36‑1 (MQ=255)
aCGGGCAAGCCACAACGCAGGTTTTGCAACCAATGc < 1:5488663/36‑1 (MQ=255)
aCGGGCAAGCCACAACGAAGGTTTTGCAACCAATGc > 1:2018252/1‑36 (MQ=255)
aCGGGAAAGCCACAACGCAGGTTTTGCAACCAATGc < 1:6341777/36‑1 (MQ=255)
cGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCa > 1:2479626/1‑36 (MQ=255)
cGGGAAAGCCACAACGCAGGTTTTGCAACCAATGCa < 1:2846359/36‑1 (MQ=255)
gggCAAGCCACAACGCAGGTTTTGCAACCAATGCaa > 1:1092755/1‑36 (MQ=255)
gggCAAGCCACAACGCAGGTTTTGCAACCAATGCaa > 1:2380845/1‑36 (MQ=255)
gggCAAGCCACAACGCAGGTTTTGCAACCAATGCaa > 1:5001108/1‑36 (MQ=255)
gggCAAGCCACAACGAAGGTTTTGCAACCAATGCaa > 1:3247866/1‑36 (MQ=255)
ggCAAGCCACAACGCAGGTTTTGCAACCAATGCAAc > 1:5548321/1‑36 (MQ=255)
ggCAAGCCACAACGCAGGTTTTGCAACCAATGCAAc > 1:1865953/1‑36 (MQ=255)
ggCAAGCCACAACGCAGGTTTTGCAACCAATGCAAc < 1:3223223/36‑1 (MQ=255)
cAAGCCACAACGCAGGTTTTGCAACCAATGCAACGt > 1:5497886/1‑36 (MQ=255)
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CCGGACGTACCACCACTTCCATCGCGCCATACGGGCAAGCCACAACGCAGGTTTTGCAACCAATGCAACGT > REL606/2732635‑2732705
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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