Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 95.0% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)41 (1.000) 28/64 NT 89.1% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 5 (0.110)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =0 (0.000)55 (1.340) 33/64 NT 100% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 121 total aligned reads displayed.

CGTGTTTAACTGTCCAAC.TTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506
                                   |                                   
cGTGTTTAACTGTCCAAC.TTTTTGGTGTCAGTACAc                                    <  1:3868116‑M1/36‑2 (MQ=255)
cGTGTTTAACTGTCCAAC.TTTTTGGGTTCAGTACAc                                    >  1:532082‑M1/1‑35 (MQ=255)
cGTGTTTAACTGTCCAAC.TTTTTGGGGTCAGTACAc                                    >  1:3322959‑M1/1‑35 (MQ=255)
cGTGTTTAACTGTCCAAC.TTTTTGGGGTCAGTACAc                                    >  1:656528‑M1/1‑35 (MQ=255)
cGTGTTTAACTGTCCAAC.TTTTTGGGGTCAGTACAc                                    >  1:2740187‑M1/1‑35 (MQ=255)
 gtgtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAcc                                   <  1:6139‑M1/36‑3 (MQ=255)
 gtgtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAcc                                   >  1:5203333‑M1/1‑34 (MQ=255)
 gtgtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAcc                                   <  1:1252306‑M1/36‑3 (MQ=255)
 gtgtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAcc                                   <  1:4703437‑M1/36‑3 (MQ=255)
 gtgtTTAAATGTCCAAC.TTTTTGGGGTCAGTACAcg                                   >  1:2244066‑M1/1‑34 (MQ=255)
   gtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAccat                                 >  1:660915‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAccat                                 <  1:5345524‑M1/36‑5 (MQ=255)
   gtTTAACTGTCCAAC.TTTTTGGGGTCAGTACAccat                                 >  1:5480529‑M1/1‑32 (MQ=255)
    tttAACTGTCCAACTTTTTTGGGGTCAGTACAccat                                 <  1:2830547/36‑3 (MQ=11)
    tttAACTGTCCAAC.TTTTTGGGGTCAGTACCccggt                                <  1:843158‑M1/36‑6 (MQ=255)
    tttAACTGTCCAAC.TTTTTGGGGTCAGTACAccggt                                >  1:4374485‑M1/1‑31 (MQ=255)
    tttAACTGTCCAAC.TTTTTGGGGTCAGTACAccatg                                <  1:3908495‑M1/36‑6 (MQ=255)
    tttAACTGTCCAAC.TTTTTGGGGTCAGTACAccatg                                <  1:1599675‑M1/36‑6 (MQ=255)
    tttAACTGTCCAAC.TTTTTGGGGTCAGTACAccatg                                >  1:3574340‑M1/1‑31 (MQ=255)
     ttAACTGTCCAAC.TTTTTGGGGTCAGTACACCCTgg                               <  1:4796343/36‑1 (MQ=40)
      tAACTGTCCAAC.TTTTTGGGGTCAGTACAccggtga                              <  1:5728154‑M1/36‑8 (MQ=255)
      tAACTGTCCAAC.TTTTTGGGGTCAGTACAccatgga                              >  1:5073458‑M1/1‑29 (MQ=255)
      tAACTGTCCAAC.TTTTTGGGGTCAGTACAccatgga                              <  1:310714‑M1/36‑8 (MQ=255)
       aaCTGTCCAAC.TTTTTGGGGTCAGTACAccggtgag                             >  1:4424439‑M1/1‑28 (MQ=255)
       aaCTGTCCAAC.TTTTTGGGGTCAGTACAccatggag                             <  1:3146714‑M1/36‑9 (MQ=255)
       aaCTGTCCAAC.TTTTTGGGGTCAGTACACCCTgggg                             >  1:1529265/1‑36 (MQ=255)
        aCTGTCCAAC.TTTTTGGGGTCAGTACAccggtgagg                            >  1:744781‑M1/1‑27 (MQ=255)
        aCTGTCCAAC.TTTTTGGGGTCAGTACAccggtgagg                            >  1:3752164‑M1/1‑27 (MQ=255)
        aCTGTCCAAC.TTTTTGGGGTCAGTACAccatggagc                            >  1:4599144‑M1/1‑27 (MQ=255)
        aCTGTCCAAC.TTTTTGGGGTCAGTACAccatggagc                            <  1:3980702‑M1/36‑10 (MQ=255)
          tGTCCAAC.TTTTTGGGGTCAGTACAccatggagcca                          >  1:1332250‑M1/1‑25 (MQ=255)
          tGTCCAAC.TTTTTGGGGTCAGTACACCCTGGGGCTg                          >  1:4555211/1‑36 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACAccggtgaggcgc                         >  1:2502611‑M1/1‑24 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACAccggtgaggcgc                         <  1:420952‑M1/36‑13 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACAccggtgaggcgc                         >  1:400759‑M1/1‑24 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACAccatggagccaa                         <  1:5928682‑M1/36‑13 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACACCCTGGGGCTGc                         >  1:2307418/1‑36 (MQ=255)
           gTCCAAC.TTTTTGGGGTCAGTACACCCTGGGGCTGc                         >  1:2823349/1‑36 (MQ=255)
             ccAAC.TTTTTGGGGTCAGTACAccatggagccaata                       <  1:5888107‑M1/36‑15 (MQ=255)
             ccAAC.TTTTTGGGGTCAGTACAccatggagccaata                       <  1:4370302‑M1/36‑15 (MQ=255)
              cacc.TTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                      <  1:717528/33‑1 (MQ=255)
                aC.TTTTTGGGGTCAGTACACCCTGGGGCTGCCACTc                    <  1:5821439/36‑1 (MQ=255)
                 c.TTTTTGGGGTCAGTACAccatggagccaatacctt                   <  1:244038‑M1/36‑19 (MQ=255)
                   tttttGGGGTCAGTACAccatggagccaataccttt                  <  1:3116255‑M1/36‑20 (MQ=255)
                    ttttGGGGTCAGTACAccggtgaggcgcaatgttgc                 <  1:440536‑M1/36‑21 (MQ=255)
                    ttttGGGGTCAGTACAccggtgaggcgcaatgttgc                 <  1:332214‑M1/36‑21 (MQ=255)
                    ttttGGGGTCAGTACAccatggagccaataccttta                 <  1:403225‑M1/36‑21 (MQ=255)
                    ttttGGGGTCAGTACAccatggagccaataccttta                 <  1:3203603‑M1/36‑21 (MQ=255)
                    ttttGGGGTCAGTACAccatggagccaataccttta                 >  1:3329205‑M1/1‑16 (MQ=255)
                    ttttGGGGTCAGTACACCCTGGGGCTGCCACTCCaa                 <  1:5408505/36‑1 (MQ=255)
                    ttttGGGGTCAGTACACCCTGGGGCTGCCACTCCaa                 <  1:5813014/36‑1 (MQ=255)
                    ttttGGGGTCAGTACACCCGGGGGCTGCCACTCCaa                 <  1:3597625/36‑1 (MQ=255)
                     tttGGGGTCAGTACAccggtgaggcgcaatgttgcg                <  1:1531713‑M1/36‑22 (MQ=255)
                     tttGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa                >  1:2878366/1‑36 (MQ=255)
                     ttgggggTAAGTACACCGTGGGTCTGCCACTCCaaa                <  1:1857898/33‑1 (MQ=19)
                      ttGGGGTCAGTACAccggtgaggcgcaatgttgcgg               <  1:5088475‑M1/36‑23 (MQ=255)
                      ttGGGGTCAGTACAccatggagccaatacctttaaa               >  1:5524429‑M1/1‑14 (MQ=255)
                      tgggggACAGTACCCGCTGGGGCTGCCACTCCAAAc               <  1:606496/34‑1 (MQ=21)
                       tGGGGTCAGTACAccggtgaggcgcaatgttgcggg              >  1:806559‑M1/1‑13 (MQ=255)
                       tGGGGTCAGTACACCCGGGTGCTGCCACTCCAAAcc              <  1:1577094/36‑1 (MQ=38)
                        ggggTCAGTACAccatggagccaatacctttaaagc             <  1:855712‑M1/36‑25 (MQ=255)
                        ggggTCAGTACAccatggagccaatacctttaaagc             >  1:1455654‑M1/1‑12 (MQ=255)
                        ggggTCAGTACACCCTGGGGCTGCCACTCCAAAccc             <  1:1803755/36‑1 (MQ=255)
                        ggggTCAGTACACCCGGGGGCTGCCACTCCAAAccc             <  1:3988032/36‑1 (MQ=255)
                        ggggTAAGTACACCCTGGGGCTGCCACTCCAAAccc             <  1:509206/36‑1 (MQ=255)
                         gggTCAGTACCCCCTGGGGCTGCCACTCCAAACCCg            <  1:2103030/36‑1 (MQ=255)
                         gggTCAGTACAccggtgaggcgcaatgttgcggggg            >  1:5340674‑M1/1‑11 (MQ=255)
                         gggTCAGTACAccggtgaggcgcaatattgcggggg            >  1:2903545‑M1/1‑11 (MQ=255)
                         gggTCAGTACAccatggagccaatacctttaaagca            >  1:1207454‑M1/1‑11 (MQ=255)
                         gggTCAGTACAccatggagccaatacctttaaagca            >  1:5744827‑M1/1‑11 (MQ=255)
                         gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCg            <  1:1784802/36‑1 (MQ=255)
                          ggTCAGTACAccggtgaggcgcaatggtgcgggggc           >  1:386842‑M1/1‑10 (MQ=255)
                          ggTCAGTACAccatggagccaatacctttaaagcaa           >  1:4824470‑M1/1‑10 (MQ=255)
                          ggTCAGTACAccatggagccaatacctttaaagcaa           <  1:825250‑M1/36‑27 (MQ=255)
                           gtaagtaCAccatggagccaatacctttaaagcaaa          <  1:3887684‑M1/33‑28 (MQ=255)
                           gTCAGTACAccggtgaggcgcaatgttgcgggggct          >  1:3425274‑M1/1‑9 (MQ=255)
                           gTCAGTACAccatggagccaatacctttaaagcaaa          <  1:4495235‑M1/36‑28 (MQ=255)
                            tCAGTACAccggtgaggcgcaatgttgcgggggctt         <  1:2133692‑M1/36‑29 (MQ=255)
                            tCAGTACAccggtgaggcgcaatgttgcgggggctt         <  1:3168903‑M1/36‑29 (MQ=255)
                            tCAGTACACCCTGGGGCTGCCACTCCAAACCCGAAc         >  1:5304787/1‑36 (MQ=255)
                             cAGTACCCCCTGGGGCTGCCACTCCAAACCCGAACa        <  1:798121/36‑1 (MQ=255)
                             cAGTACAccggtgaggcgcaatgttgcgggggcttt        >  1:3844889‑M1/1‑7 (MQ=255)
                              aGTACAccggtgaggcgcaatgttgcgggggcttta       >  1:2784274‑M1/1‑6 (MQ=255)
                              aGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa       >  1:3647038/1‑36 (MQ=255)
                               gTACAccatggagccaatacctttaaagcaaacatg      >  1:5644853‑M1/1‑5 (MQ=255)
                               gTACAccatggagccaatacctttaaagcaaacatg      >  1:5103398‑M1/1‑5 (MQ=255)
                                tACACCCTGGGGCTGCCACTCCAAACCCGAACAAtt     <  1:2075887/36‑1 (MQ=255)
                                gacacCCTGGGGCTGCCACTCCAAACCCGAACAAtt     <  1:1056366/35‑1 (MQ=255)
                                 acaccatggagccaatacctttaaagcaaacatgga    <  1:2859617‑M1/36‑34 (MQ=255)
                                 acaccatggagccaatacctttaaagcaaacatgga    <  1:1160114‑M1/36‑34 (MQ=255)
                                 acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:5268875/1‑36 (MQ=255)
                                 acacCCTGGGGCTGCCACTCCAAACCCGAACAAttt    >  1:1647838/1‑36 (MQ=255)
                                  caccggtgaggcgcaatgttgcgggggctttatccc   <  1:1693572‑M1/36‑35 (MQ=255)
                                  caccatggagccaatacctttaaagcaaacatggag   >  1:4906228‑M1/1‑2 (MQ=255)
                                  cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   <  1:51121/36‑1 (MQ=255)
                                  cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   <  1:4859091/36‑1 (MQ=255)
                                  cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   >  1:4682894/1‑36 (MQ=255)
                                   accggtgaggcgcaatgttgcgggggctttatccct  <  1:792884‑M1/36‑36 (MQ=255)
                                   accatggagccaatacctttaaagcaaacatggcgg  <  1:942629‑M1/36‑36 (MQ=255)
                                   acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:3333999/1‑36 (MQ=255)
                                   |                                   
CGTGTTTAACTGTCCAAC.TTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG