Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,627,384 | 0 | C→A | 8.4% | 1.0 ‑10.5 0.0 | 74 | 1591 | ydfE | predicted protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/9): ref base (48/17): total (48/26) | ||||||||||
Fisher's exact test strand distribution p-value = 2.83e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACCAAAAAGCGGAACAAAACAGCCCAAATGCGTTACAAAACGAGCCAGAAACGAAACAGCCTGAACCAGTG > REL606/1627349‑1627419
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aCCAAAAAGCGGAACAAAACAGCCCAAATGCGTTAc < 1:1056012/36‑1 (MQ=255)
aCCAAAAAGCGGAACAAAACAGCCCAAATGCGTTAc > 1:5568719/1‑36 (MQ=255)
aCCAAAAAGCGGAACAAAACAGCCCAAATGCGTTAc > 1:2195754/1‑36 (MQ=255)
aaaaaGCGGAACAAAACAGCCCAAATGCGTTACaaa > 1:1490092/1‑36 (MQ=255)
aaaaaGCGGAACAAAACAGCCCAAATGCGTTACaaa > 1:3433812/1‑36 (MQ=255)
aaaaaGCGGAAC.AAACAGCCCAAATGCGTTACaaaa > 1:3724796/1‑36 (MQ=38)
aaaaGCGGAACAAAACAGCCCAAATGCGTTACaaaa > 1:5576651/1‑36 (MQ=255)
aaaaGCGGAACAAAACAGCCCAAATGCGTTACaaaa > 1:5895765/1‑36 (MQ=255)
aaaaGCGGAACAAAACAGCCCAAATGCGTTACaaaa < 1:1508180/36‑1 (MQ=255)
aaaaGCGGAACAAAACAGCCCAAATGCGTTACaaaa < 1:1229817/36‑1 (MQ=255)
aaaaGCGAAACAAAACAGCCCAAATGCGTTACaaaa < 1:4988161/36‑1 (MQ=255)
aaaGCGGAACAAAACAGCCCAAATGCGTTACAAAAc > 1:1198314/1‑36 (MQ=255)
aaGCGGAACAAAACAGCCCAAATGCGTTACAAAACg > 1:279643/1‑36 (MQ=255)
aaGCGGAACAAAACAGCCCAAATGCGTTACAAAACg > 1:2806156/1‑36 (MQ=255)
aGCGGAACAAAACAGCCCAAATGCGTTACAAAACGa > 1:1253645/1‑36 (MQ=255)
gCGGAACAAAACAGCCCAAATGCGTTACAAAACGAg < 1:2750790/36‑1 (MQ=255)
gCGGAACAAAACAGCCCAAATGCGTTACAAAACGAg > 1:709268/1‑36 (MQ=255)
gCGGAACAAAACAGCCCAAATGCGTTACAAAACGAg < 1:6587399/36‑1 (MQ=255)
gCGGAACAAAACAGCCCAAATGCGTTACAAAACGAg > 1:3147971/1‑36 (MQ=255)
gCGGAACAAAACAGCCCAAATGCGTTACAAAACGAg < 1:1453068/36‑1 (MQ=255)
cGGAACAAAACAGCCCAAATGCGTTACAAAACGAGc < 1:4712680/36‑1 (MQ=255)
cGGAACAAAACAGCCCAAATGCGTTACAAAACGAGc > 1:1090609/1‑36 (MQ=255)
cGGAACAAAACAGCCCAAATGCGTTACAAAACGAGc < 1:2484871/36‑1 (MQ=255)
ggAACAAAACAGCCCAAATGCGTTACAAAACGAGcc > 1:3076256/1‑36 (MQ=255)
ggAACAAAACAGCCCAAATGCGTTACAAAACGAGcc > 1:3735931/1‑36 (MQ=255)
ggAACAAAACAGCCCAAATGCGTTACAAAACGAGcc > 1:3351307/1‑36 (MQ=255)
ggAACAAAACAGCCCAAATGCGTTACAAAACGAGcc < 1:2191421/36‑1 (MQ=255)
ggAACAAAACAGCCCAAATGCGTTACAAAACGAGcc > 1:1777330/1‑36 (MQ=255)
gAACAAAACAGCCCAAATGCGTTACAAAACGAGCCa > 1:2867653/1‑36 (MQ=255)
gAACAAAACAGCCCAAATGCGTTACAAAACGAGCCa > 1:1068864/1‑36 (MQ=255)
aaCAAAACAGCCCAAATGCGTTACAAAACGAGCCAg > 1:4453564/1‑36 (MQ=255)
aaCAAAACAGCCCAAATACCTTACAAAACGATCCAg > 1:1699031/1‑36 (MQ=255)
aCAAAACAGCCCAAATGCGTTACAAAACGAGCCAga < 1:4184537/36‑1 (MQ=255)
cAAAACAGCCCAAATGCGTTACAAAACGAGCCAgaa > 1:6268620/1‑36 (MQ=255)
cAAAACAGCCCAAATGCGTTACAAAACGAGCCAgaa > 1:7193339/1‑36 (MQ=255)
aaaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaa < 1:3842454/35‑1 (MQ=255)
aaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaa > 1:559635/1‑36 (MQ=255)
aaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaa > 1:631986/1‑36 (MQ=255)
aaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaa > 1:7217759/1‑36 (MQ=255)
aaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaa < 1:3807535/36‑1 (MQ=255)
aaaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaa > 1:1117645/1‑36 (MQ=255)
aaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaac > 1:829096/1‑36 (MQ=255)
aaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaac > 1:3953848/1‑36 (MQ=255)
aaaCAGCCCAAATGCGTTACAAAACGAGCCAgaaac < 1:3044544/36‑1 (MQ=255)
aaaCAGCCCAAATGCGGTACAAAACGAGCCAgatac > 1:5741277/1‑36 (MQ=37)
aaCAGCCCAAATGCGTTACAAAACGAGCCAgaaacg > 1:5981753/1‑36 (MQ=255)
aCAGCCCAAATGCGTTACAAAACGAGCCAgaaacga > 1:1831086/1‑36 (MQ=255)
cAGCCCAAATGCGTTACAAAACGAGCCAgaaacgaa > 1:4984138/1‑36 (MQ=255)
cAGCCCAAATGCGTTACAAAACGAGCCAgaaacgaa > 1:4996950/1‑36 (MQ=255)
cAGCCCAAATGCGTTACAAAACGAGCCAgaaacgaa < 1:1087277/36‑1 (MQ=255)
cAGCCCAAATGCGTTACAAAACGAGCCAgaaacgaa > 1:680298/1‑36 (MQ=255)
aGCCCAAATGCGTTACAAAACGAGCCAgaaacgaaa > 1:775105/1‑36 (MQ=255)
aGCCCAAATGCGTTACAAAACGAGCCAgaaacgaaa > 1:1467987/1‑36 (MQ=255)
aGCCCAAATGCGTTACAAAACGAGCCAgaaacgaaa < 1:1232270/36‑1 (MQ=255)
cccAAATGCGTTACAAAACGAGCCAGAAACGAAACa > 1:2622535/1‑36 (MQ=255)
ccAAATGCGTTACAAAACGAGCCAGAAACGAAACAg > 1:3687689/1‑36 (MQ=255)
ccAAATGCGTTACAAAACGAGCCAGAAACGAAACAg > 1:679819/1‑36 (MQ=255)
cAAATGCGTTACAAAACGAGCCAGAAACGAAACAGc > 1:6099724/1‑36 (MQ=255)
cAAATGCGTTAAAAAACGAGCCAGAAACGAAACAGc < 1:4216090/36‑1 (MQ=255)
aaTGCGTTACAAAACGAGCCAGAAACGAAACAGCCt > 1:1689554/1‑36 (MQ=255)
aaTGCGTTACAAAACGAGCCAGAAACGAAACAGCCt < 1:5808254/36‑1 (MQ=255)
aaTGCGTTAAAAAACGAGCCAGAAACGAAACAGCCt < 1:484190/36‑1 (MQ=255)
aTGCGTTACAAAACGAGCCAGAAACGAAACAGCCTg > 1:4043050/1‑36 (MQ=255)
aTGCGTTACAAAACGAGCCAGAAACGAAACAGCCTg > 1:4206615/1‑36 (MQ=255)
aTGCGTTACAAAACGAGCCAGAAACGAAACAGCCTg > 1:5095368/1‑36 (MQ=255)
aTGCGTTAAAAAACGAGCCAGAAACGAAACAGCCTg < 1:2401665/36‑1 (MQ=255)
tGCGTTAAAAAACGAGCCAGAAACGAAACAGCCTGa < 1:1429166/36‑1 (MQ=255)
cattAAAAAACGAGCCAGAAACGAAACAGCCTTAAc < 1:5601470/34‑1 (MQ=37)
cGTTAAAAAACGAGCCAGAAACGAAACAGCCTGAAc < 1:2586256/36‑1 (MQ=255)
ttACAAAACGAGCGAGAAACGAAACAGCCTGAACCa > 1:3242728/1‑36 (MQ=255)
ttACAAAACGAGCCAGAAACGAAACAGCCTGAACCa < 1:6014627/36‑1 (MQ=255)
ttAAAAAACGAGCCAGAAACGAAACAGCCTGAACCa < 1:113692/36‑1 (MQ=255)
ttAAAAAACGAGCCAGAAACGAAACAGCCTGAACCa < 1:954092/36‑1 (MQ=255)
ttAAAAAACGAGACAGAAACGAAACAGCCTGAACCa < 1:5055398/36‑1 (MQ=38)
tACAAAACGAGCCAGAAACGAAACAGCCTGAACCAg > 1:3845831/1‑36 (MQ=255)
aCAAAACGAGCCAGAAACGAAACAGCCTGAACCAGt > 1:5735935/1‑36 (MQ=255)
aCAAAACGAGCCAGAAACGAAACAGCCTGAACCAGt > 1:5398173/1‑36 (MQ=255)
cAAAACGAGCCAGAAACGAAACAGCCTGAACCAGTg > 1:3470350/1‑36 (MQ=255)
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ACCAAAAAGCGGAACAAAACAGCCCAAATGCGTTACAAAACGAGCCAGAAACGAAACAGCCTGAACCAGTG > REL606/1627349‑1627419
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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