New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 381468662 (1.130)6 (0.110) 5/64 NT 8.0% coding (834/1185 nt) emrD multidrug efflux system protein
?REL606 = 4414859 77 (1.280)intergenic (+305/‑4) fklB/cycA FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/D‑alanine/D‑serine/glycine transporter

CCAATAAACGCTTCTCCACGTTAATGTGGCAGTCGGTT...................................  >  REL606/3814649‑3814686
...................................GTTTTTTTCTTCCTGTACCTGTCTGTGTTGTTCAGGCT  <  REL606/4414859‑4414825
                                                                         
     AAACGCTTCTCCACGTTAATGTGGCAGTCGGTTTTT                                  >  1:5814247/1‑36 (MQ=255)
     AAACGCTTCTCCACGTTAATGTGGCAGTCGGTTTTT                                  >  1:7565209/1‑36 (MQ=255)
       ACGCTTCTCCACGTTAATGTGGCAGTCGGTTTTTTT                                >  1:4693414/1‑36 (MQ=255)
         GCTTCTCCACGTTAATGTGGCAGTCGGTTTTCTTCT                              >  1:4061390/1‑36 (MQ=255)
            TCTCCACGTTAATGTGGCAGTCGGTTTTTTTCTTCC                           >  1:5263847/1‑36 (MQ=255)
             CTCCACGTTAATGTGGCAGTCGGTTTTTTTCTTCCT                          >  1:5000345/1‑36 (MQ=255)
                                                                         
CCAATAAACGCTTCTCCACGTTAATGTGGCAGTCGGTT...................................  >  REL606/3814649‑3814686
...................................GTTTTTTTCTTCCTGTACCTGTCTGTGTTGTTCAGGCT  <  REL606/4414859‑4414825

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 12 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG