Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,294,000 | G→T | 25.8% | intergenic (+150/‑92) | nrdA → / → nrdB | ribonucleotide‑diphosphate reductase alpha subunit/ribonucleotide‑diphosphate reductase beta subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,294,000 | 0 | G→T | 25.8% | 6.4 ‑3.8 ‑0.0 | 36 | intergenic (+150/‑92) | nrdA/nrdB | ribonucleotide‑diphosphate reductase alpha subunit/ribonucleotide‑diphosphate reductase beta subunit |
Reads supporting (aligned to +/- strand): new base (9/1): ref base (11/15): total (20/16) | ||||||||||
Fisher's exact test strand distribution p-value = 2.19e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.97e-01 |
GCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATC > REL606/2293965‑2294031
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gCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTg < 1:2592420/36‑1 (MQ=255)
ccTTATCCGGCCTACGGCTCTACGGCTCGGATTTGt < 1:2726074/36‑1 (MQ=255)
cTTATCCGGCCTACGGCTCTACGGCTCGGGTTTTTa > 1:3183833/1‑36 (MQ=21)
tATCCGGCCTACGGCTCTACGGCTCGGATTTGTAgg > 1:296342/1‑36 (MQ=255)
aTCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGc < 1:8268237/36‑1 (MQ=255)
cGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTg > 1:6876630/1‑36 (MQ=255)
ggCCTACGGCTCTACGGCTCGGATTTTTAGGCCTgt > 1:5290290/1‑35 (MQ=255)
ccTACGGCTCTACGTCTCGGATTTGTAGGCCTGATa < 1:3393321/36‑1 (MQ=255)
ccTACGGCTCTACGGCTCGGATTTTTAGGCCTGATa > 1:7643406/1‑36 (MQ=255)
ccTACGGCTCTACGGCTCGGATTTGTAGGCCTGATa < 1:8217633/36‑1 (MQ=255)
ctacggctctacggctCGGGTTTTTAGGCCTGATaa > 1:7803609/1‑36 (MQ=21)
ctacggctctacggctCGGGTTTTTAGGCCTGATaa > 1:4421614/1‑36 (MQ=21)
ctacggctctacggctCGGGTTTTTAGGCCTGANna > 1:2339724/1‑36 (MQ=21)
ctacggctctacggctCCGATTTTTAGGCCTTATaa > 1:5168467/1‑36 (MQ=37)
tacggctctacggctcGGGTTTTTAGGCCTGATAAg > 1:5288293/1‑36 (MQ=21)
tacggctctacggctcGGATTTGTAGGCCTGATAAg < 1:7311681/36‑1 (MQ=255)
ggctctacggctcGGATTTGTAGGCCTGATAAGAcg < 1:5588670/36‑1 (MQ=255)
gctctacggctcGGATTTTTAGGCCTGATAAGAcgc < 1:374261/36‑1 (MQ=255)
gctctacggctcGGATTTGTAGGCCTGATAAGAcgc > 1:3110828/1‑36 (MQ=255)
gctctacggctcGGATTTGTAGGCCTGATAAGAcgc < 1:5887232/36‑1 (MQ=255)
ctctactgctcGGATTTGTAGGCCTGATAAGAcgcg < 1:6453372/36‑1 (MQ=255)
ctctacggctcGGCTTTGTAGGCCTGATAAGAcgcg > 1:1981639/1‑36 (MQ=255)
ctctacggctcGGATTTGTAGGCCTTATAAGAcgcg > 1:4092758/1‑36 (MQ=255)
ctctacggctcGGATTTGTAGGCCTGATAAGAcgcg < 1:5065802/36‑1 (MQ=255)
tctacggctcGGATTTTTATGCCTGATAAGACgcgc > 1:4183940/1‑36 (MQ=18)
tctacggctcGGATTTGTAGGCCTTATAAGACgcgc > 1:4355195/1‑36 (MQ=255)
ctacggctcGGATTTGTAGGCCTGATAAGACGCGcc < 1:8110509/36‑1 (MQ=255)
cggctcGGATTTGTAGGCCTGATAAGACGCGCCAGc < 1:5391808/36‑1 (MQ=255)
cggctcGGATTTGTAGGCCTGATAAGACGCGCCAGc < 1:7095006/36‑1 (MQ=255)
gctcGGATTTGTAGGCCTGATAAGACGCGCCAGCGt < 1:5452769/36‑1 (MQ=255)
ctcGGATTTGTAGGCCTGATAAGACGCGCCAGCGTc < 1:1531100/36‑1 (MQ=255)
cGGATTTGTAGGCNNGATNNGACGCGCCCGCGTCGc > 1:3442269/1‑36 (MQ=14)
ggATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCa > 1:7424902/1‑36 (MQ=38)
gATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAt > 1:3397023/1‑36 (MQ=35)
gATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAt > 1:2640834/1‑36 (MQ=35)
gATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAt > 1:2256022/1‑36 (MQ=35)
aTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATc < 1:7941624/36‑1 (MQ=32)
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GCCTTATCCGGCCTACGGCTCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATC > REL606/2293965‑2294031
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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