New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 140096348 (1.010)13 (0.270) 7/58 NT 23.2% coding (773/1311 nt) abgA predicted peptidase, aminobenzoyl‑glutamate utilization protein
?REL606 = 3875872 38 (0.660)intergenic (‑306/+47) glmU/atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

TGTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCATTGTGACCGTCTTCT  >  REL606/1400928‑1400998
                                   |                                   
tgtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                     >  1:3104903‑M1/1‑36 (MQ=255)
 gtgCGGGGCGATTGCATGCAGTGCACGAGTGGCTtg                                    <  1:1381466/36‑1 (MQ=255)
 gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                    >  1:2735651‑M1/1‑35 (MQ=255)
 gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                    >  1:4154337‑M1/1‑35 (MQ=255)
 gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                    >  1:1642469‑M1/1‑35 (MQ=255)
 gtgCGGGGCGATTGAATGCAGTGAAAGAGTGGCttt                                    >  1:4400854/1‑35 (MQ=25)
  tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTtgt                                   <  1:6615841/36‑1 (MQ=255)
   gCGGGGCGATTGCATGCAGTGCAAGAGTGGCTtgtg                                  <  1:6186108/36‑1 (MQ=255)
   gCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTttt                                  >  1:653262‑M1/1‑33 (MQ=255)
    cGGGGCGATTGCATGCAGGGCAAGAGTGGATtttgt                                 >  1:5471816/1‑35 (MQ=21)
     ggggCGATTGCATGCAGTGCAAGAGTGGCTTttttt                                >  1:598506‑M1/1‑31 (MQ=255)
      gggCGATTGCATGCAGTGCAAGAGTGGCTTtttttt                               >  1:2943327‑M1/1‑30 (MQ=255)
      gggCGATTGCATGCAGTGCAAGAGTGGCTTtttgtg                               >  1:1430372‑M1/1‑30 (MQ=255)
      gggCGATTGCATGCAGTGCAAGAGTGGCTTGtgctg                               <  1:4102520/36‑1 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTttttttg                              >  1:3631908‑M1/1‑29 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttgt                              >  1:3712384‑M1/1‑29 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttgc                              >  1:3635933‑M1/1‑29 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTGtgctgc                              <  1:2789143/36‑1 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTGtgctgc                              <  1:2152131/36‑1 (MQ=255)
       ggCGATTGCATGCAGTGCAAGAGTGGCTTGtgctgc                              <  1:2789067/36‑1 (MQ=255)
        gCGATTGCATGCAGTGCAAGAGTGGCTTttttttgc                             >  1:6406582‑M1/1‑28 (MQ=255)
         cGATTGCGTGCCGTGCAGGAGTGGCTTGTGCTgccg                            <  1:882047/36‑1 (MQ=25)
         cGATTGCATGCAGTGCAAGAGTGGCTTTTTCTgccg                            >  1:5148204/1‑36 (MQ=37)
          gATTGCATGCAGTGGAAGAGTGGCTTGTGCTgccgc                           <  1:4473847/36‑1 (MQ=255)
          gATTGCATGCAGTGCAAGAGTGGCTTttttttccgc                           >  1:759243‑M1/1‑26 (MQ=255)
           aTTGCATGCAGTGCAAGAGTGGCTTttgtttgcgcc                          >  1:3195540‑M1/1‑25 (MQ=255)
           aTTGCATGCAGTGCAAGAGTGGCTTTTTTTgccgcc                          >  1:4854339/1‑36 (MQ=25)
           aTTGCATGCAGTGCAAGAGTGGCTTTTTCTgccgcc                          >  1:1629928/1‑36 (MQ=37)
           aTTGCATGCAGTGCAAGAGTGGCTTTTTCTgacgac                          >  1:6131737/1‑34 (MQ=21)
           aTTGCATGCAGTGCAAGAGTGGCTTGTGCTgccgcc                          <  1:1902692/36‑1 (MQ=255)
           aTTGCATGCAGTGCAAGAGTGGCTTGTGCTgccgcc                          <  1:5679409/36‑1 (MQ=255)
            ttGCATGCAGTGCAAGAGTGGCTTGTGCTGCCGCca                         <  1:962873/36‑1 (MQ=255)
              gcatgcaGTGCAAGAGTGGCTTTTTGTTCCGCcaac                       >  1:6547131/1‑36 (MQ=19)
              gcatgcaGTGCAAGAGTGGCTTGTGCTGCCGCcaac                       <  1:1566348/36‑1 (MQ=255)
              gcatgcaGGGCAAGAGTGGCTTTTTCTGCCGCcgac                       >  1:1060378/1‑36 (MQ=16)
               catgcaGTGCAAGAGTGGCTTTTTGTTCCGCcaaca                      >  1:3540939/1‑36 (MQ=19)
               catgcaGTGCAAGAGTGGCTTGTGCTGCCGCcaaca                      <  1:5215617/36‑1 (MQ=255)
                atgcaGTGCAAGAGTGGCTTCTTGTGGCGCcaacaa                     >  1:4930542/1‑36 (MQ=19)
                 tgcaGTGCAAGAGTGGCTTTTTTTTCCGCcaacaaa                    >  1:122567/1‑35 (MQ=16)
                 tgcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                    <  1:6026226/36‑1 (MQ=255)
                 tgcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                    <  1:6892182/36‑1 (MQ=255)
                 tgcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                    <  1:1314018/36‑1 (MQ=255)
                  gcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAgg                   <  1:6587691/36‑1 (MQ=255)
                  gcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAgg                   <  1:3460188/36‑1 (MQ=255)
                    aGTGCAAGAGTGGCTTTTGATGCCGCCCAAAAggga                 >  1:2663611/1‑34 (MQ=16)
                     gttcAAGAGTGGCTTGTGCTGCCGCCAACAAGGCAt                <  1:3592546/33‑1 (MQ=255)
                     gTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCAt                <  1:3057324/36‑1 (MQ=255)
                      tGCAAGAGTGGTTTGTGCTGCCGCCAACAAGGCAtt               <  1:7291327/36‑1 (MQ=255)
                      tGCAAGAGTGGCTTTTTCTTCCGCCAAAAAGGGAtt               >  1:2028789/1‑36 (MQ=12)
                      tGCAAGAGTGGCTTTTGCTGCCGCCCACAAGGCCtt               >  1:1673541/1‑36 (MQ=25)
                      tGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCAtt               <  1:1548989/36‑1 (MQ=255)
                        cAAGAGTGGCTTGTTCTGCCGCCAACAAGGCATtgt             >  1:1104777/1‑36 (MQ=255)
                         aaGAGTGGCTTTTGCTGTCGCCCAAAAGGCATtttg            >  1:2286144/1‑36 (MQ=16)
                         aaGAGTGGCTTGTGCTTCCGCCCACAAGGCATtgtg            >  1:6691700/1‑36 (MQ=38)
                          agagTGGCTTGTGCTGCCGCCAACAAGGCATTGTGa           <  1:4011162/36‑1 (MQ=255)
                          agagTGGCTTGTGCTGCCGCCAACAAGGCATTGTGa           <  1:3750295/36‑1 (MQ=255)
                           gagTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAc          <  1:583627/36‑1 (MQ=255)
                           gagTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAc          >  1:1036618/1‑36 (MQ=255)
                            agTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAcc         <  1:3834723/36‑1 (MQ=255)
                            agTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAcc         <  1:1723685/36‑1 (MQ=255)
                              tGGCTTttttttgcgcgtgtgacccgtcctgaatag       <  1:5956439‑M1/36‑31 (MQ=255)
                              tGGCTTttttttgcgcgtgtgacccgtcctgaatag       <  1:6345093‑M1/36‑31 (MQ=255)
                              tGGCTTGTGCTGCCGCCAACAAGGCATTGTGACCGt       >  1:1587292/1‑36 (MQ=255)
                               ggCTTttttttgcgcgtgtgacccgtcctgaatagc      <  1:6166913‑M1/36‑32 (MQ=255)
                               ggCTTttttttgcgcgtgtgacccgtcctgaatagc      <  1:6482072‑M1/36‑32 (MQ=255)
                                gCTTGTGCAGCCGCCAACAAGGCATTGTGACCGtct     <  1:4605861/36‑1 (MQ=255)
                                 cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtctt    >  1:4512050/1‑36 (MQ=255)
                                 cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtctt    <  1:7384575/36‑1 (MQ=255)
                                 cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtctt    >  1:2412398/1‑36 (MQ=255)
                                  ttttttttgcgcgtgtgacccgtcctgaatagcgtt   >  1:6804729‑M1/1‑2 (MQ=255)
                                  ttGTGCTGCCGCCAACAAGGCATTGTGACCGtcttc   >  1:323530/1‑36 (MQ=255)
                                  ttGTGCTGCCGCCAACAAGGCATTGTGACCGtcttc   >  1:3312762/1‑36 (MQ=255)
                                   tttttttgcgcgtgtgacccgtcctgaatagcgttc  <  1:1639061‑M1/36‑36 (MQ=255)
                                   tttttttgcgcgtgtgacccgtcctgaatagcgttc  <  1:4947712‑M1/36‑36 (MQ=255)
                                   tttttttgcgcgtgtgacccgtcctgaatagcgttc  <  1:994606‑M1/36‑36 (MQ=255)
                                   tgtgCTGCCGCCAACAAGGCATTGTGACCGtcttct  <  1:6989078/36‑1 (MQ=255)
                                   |                                   
TGTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCATTGTGACCGTCTTCT  >  REL606/1400928‑1400998

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 16 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG