Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 348,859 | C→G | 17.4% | R349G (CGT→GGT) | mhpT → | predicted 3‑hydroxyphenylpropionic transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 348,859 | 0 | C→G | 17.4% | 4.8 ‑4.6 0.0 | 47 | 1045 | mhpT | predicted 3‑hydroxyphenylpropionic transporter |
Reads supporting (aligned to +/- strand): new base (8/1): ref base (15/23): total (23/24) | ||||||||||
Fisher's exact test strand distribution p-value = 1.02e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCGCAACAGGTGTGGGAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTGGCCGGG > REL606/348824‑348894
|
gcgcACGAGGTGTGGGAACAGCCGTGACGGTAGGGc < 1:328148/36‑1 (MQ=25)
gcAACAGGTGTGGGAACAGCCGTGGCGGGAGGGCGt > 1:615496/1‑36 (MQ=255)
agaGGTTTGGGAACCGCCGTGGCGGTAGGGCGTCTg < 1:497994/34‑1 (MQ=37)
aCAGGTGTGGGAACAGCCGTGGCGGGAGGGGGGCTg > 1:4133887/1‑36 (MQ=255)
cAGGTGTGGGAACAGCCGTGGCGGTGGGGGGTCTgg > 1:3061065/1‑36 (MQ=37)
aGGTGTGGGAACAGCCGTGGCGGTAGGGGGGCTggg > 1:3096630/1‑36 (MQ=37)
ggggtgGGAACAGCCGTGGCGGTAGGGGGTTTtggg > 1:6228377/4‑36 (MQ=19)
gtgtGGGAACAGCCGTGGCGGTGGGGGGTCTggggg > 1:1832128/1‑36 (MQ=37)
gtggGGGAACAGCCGTGGCGGTAGGGCGTCTggggg < 1:651377/36‑1 (MQ=255)
gtggGGGAACAGCCGTGGCGGTAGGGCGTCTggggg < 1:3376022/36‑1 (MQ=255)
gggtgGGAACAGCCGTGGCGGTAGGGCGTCTggggg < 1:6020538/34‑1 (MQ=255)
tgtgGGAACAGCCGTGGCGGGGGGGGGTCTGGTGGc > 1:2742952/1‑36 (MQ=255)
gtgGGAACAGCCGTGGCGGTAGGGCGGCTggggggg > 1:5316449/1‑34 (MQ=37)
gtgGGAAAAGCCGTGGCGGTAGGGGGGCTggggggc > 1:5475007/1‑34 (MQ=21)
tgGGAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTa < 1:3593788/36‑1 (MQ=255)
ggggAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTa < 1:6420786/35‑1 (MQ=255)
gggAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTAt < 1:5629331/36‑1 (MQ=255)
gggAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTAt < 1:3170094/36‑1 (MQ=255)
ggAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTATg < 1:1495498/36‑1 (MQ=255)
gaccAGCCGTGGCGGTAGGGCGTCTGGGGGCTATGa < 1:5597440/33‑1 (MQ=255)
aaCAGCCGTGGCGGTAGGGCGCCTGGGGGGTATGAg > 1:6771641/1‑36 (MQ=38)
aaCAGCCGTGGCGGTAGGGCGCCTGGGGGCTATGAg > 1:7573681/1‑36 (MQ=255)
aaCAGCCGTGGCGGGAGGGGGTGTGGGGGGGATGAg > 1:2546488/1‑36 (MQ=255)
cAGCCGTGGCGGTAGGGCGTCTGGGGGCTATGAGCg < 1:4017799/36‑1 (MQ=255)
aGCCGTGGCGGTTGGGCGTCTGGGGGGTTTGAGCgg > 1:6449319/1‑36 (MQ=25)
aGCCGTGGCGGTAGGGCGTCTGGGGGCTATGAGCgg < 1:3933180/36‑1 (MQ=255)
ccGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTc < 1:3898569/36‑1 (MQ=255)
ccGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTc < 1:6311648/36‑1 (MQ=255)
ccGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTc < 1:3262931/36‑1 (MQ=255)
cGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTcc < 1:5657761/36‑1 (MQ=255)
tGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGt < 1:6712472/36‑1 (MQ=255)
tGGCGGTAATGGCTCTGGGGGCTTTGAGCGGTCCGt < 1:1669254/36‑1 (MQ=16)
ggCGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGtt < 1:3825982/36‑1 (MQ=255)
ggCGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGtt > 1:254467/1‑36 (MQ=255)
gCGGTGGGGCGTCTGGGGGCTATGAGCGGTCCGTTa < 1:2671572/36‑1 (MQ=255)
cGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTAc > 1:5853526/1‑36 (MQ=255)
ggTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACt > 1:2400279/1‑36 (MQ=255)
ggTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACt < 1:5871348/36‑1 (MQ=255)
gTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTg > 1:3033362/1‑36 (MQ=255)
gTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTg > 1:1467148/1‑36 (MQ=255)
gTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTg < 1:1104078/36‑1 (MQ=255)
aGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTGGc < 1:4911231/36‑1 (MQ=255)
aGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTGGc > 1:4049062/1‑36 (MQ=255)
aGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTGGc > 1:5035068/1‑36 (MQ=255)
gggCGTCTGGGGGCTATGAGCGGTCCGTTACTGGcc < 1:4658126/36‑1 (MQ=255)
gggCGTCTGGGGGCTATGAGCGGTCCGTTACTGGcc > 1:1708449/1‑36 (MQ=255)
gggCGTCTGGGGGCTATGAGCGGTCCGTTACTGGcc > 1:4312157/1‑36 (MQ=255)
ggCGTCTGGGGGCTATGAGCGGTCCGTTACTGGCCg > 1:7043342/1‑36 (MQ=255)
cGTCTGGGGGCTATGAGCGGTCTGTCAATGGCCggg > 1:4520351/1‑36 (MQ=25)
cGTCTGGGGGCTATGAGCGGTCCGTTACTGGCCggg > 1:1415989/1‑36 (MQ=255)
|
GCGCAACAGGTGTGGGAACAGCCGTGGCGGTAGGGCGTCTGGGGGCTATGAGCGGTCCGTTACTGGCCGGG > REL606/348824‑348894
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|