New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 84006427 (0.570)4 (0.080) 3/58 NT 13.6% coding (566/747 nt) glnH glutamine ABC transporter periplasmic protein
?REL606 = 1619524 24 (0.420)intergenic (‑133/+84) rem/hokD predicted protein/small toxic polypeptide

AGTCACCTACCGCTTTGAACTGACCGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGC  >  REL606/840029‑840099
                                   |                                   
agTCACCTACCGCTTTGAACTGACCGTTACCGGCGG                                     >  1:7230141‑M1/1‑36 (MQ=255)
agTCACCTACCGCTTTGAACTGACCGTTACCGGCGG                                     <  1:4994292‑M1/36‑1 (MQ=255)
agTCACCTACCGCTTTGAACTGACCGTTACCGGCGG                                     <  1:3524959‑M1/36‑1 (MQ=255)
agTCACCTACCGCTTTGAACTGACCGTTACCGGCGG                                     >  1:3327809‑M1/1‑36 (MQ=255)
 gtaaCCTACCGCTTTGAACTGACCGTTACCGGCGGt                                    <  1:6123510/33‑1 (MQ=255)
 atCACCACCCGCTTAGACCTTCCCGTTACCGGCGGt                                    <  1:4443243/35‑1 (MQ=9)
  tCACCTACCGCTTTGAACTGACCGTTACCGGCGGtt                                   <  1:6303215/36‑1 (MQ=255)
    aCCTACCGCTTTGAACTGACCGTTACCGGCGGtttt                                 <  1:5560576/36‑1 (MQ=255)
    aCCTACCGCTTTGAACTGACCGTTACCGGCGGgttt                                 >  1:1254752‑M1/1‑32 (MQ=255)
      cTACCGCTTTGAACTTACCGTTACCGGCGGGTCtga                               >  1:6438488/1‑36 (MQ=25)
      cTACCGCTTTGAACTGACCGTTTCCGGCGGTTTtga                               <  1:3298403/36‑1 (MQ=255)
       tACCGCTTTGAACTGACCGTTACCGGCGGTTTtgat                              <  1:5654540/36‑1 (MQ=255)
       tACCGCTTTGAACTGACCGTTACCGGCGGTTTtgat                              <  1:3715999/36‑1 (MQ=255)
        aCCGCTTTGAACTGACCGTTACCGGCGGgttttttt                             >  1:555678‑M1/1‑28 (MQ=255)
          cGCTTTGAACTGACCGTTACCGGCGGTTTTGATGaa                           <  1:5061269/36‑1 (MQ=255)
          cGCTTTGAACTGACCGTTACCGGCGGTTTTGATGaa                           <  1:4412293/36‑1 (MQ=255)
            cTTTGAACTGACCGTTACCGGCGGgttttttttttt                         >  1:5466718‑M1/1‑24 (MQ=255)
             tttGAACTGACCGTTACCGGCGGgttttttttttta                        >  1:118058‑M1/1‑23 (MQ=255)
             tttGAACTGACCGTTACCGGCGGTTTTGATGAAGTa                        <  1:6424133/36‑1 (MQ=255)
              ttGAACTGACCGTTACCGGCGGTTTTGATGAAGTAc                       <  1:6477191/36‑1 (MQ=255)
              ttGAACTGACCGTTACCGGCGGTTTTGATGAAGTAc                       <  1:5198989/36‑1 (MQ=255)
                 aaCTGACCGTTACCGGCGGTTTTGATGAAGTACAGa                    <  1:946724/36‑1 (MQ=255)
                  acggACCGTTACCGGCGGTTTTGATGAAGTACAGaa                   <  1:5704342/33‑1 (MQ=255)
                  aCTGACCGTTACCGGCGGTTTTGATGAAGTACAGaa                   <  1:5461674/36‑1 (MQ=255)
                  aCTGACCGTTACCGGCGGTTTTCATGAAGTACAGaa                   <  1:2619221/36‑1 (MQ=255)
                   cTGACCGTTACCGGCGGTTTTGATGAAGTACAGAAt                  <  1:2193729/36‑1 (MQ=255)
                   cTGACCGTTACCGGCGGTTTTGATGAAGTACAGAAt                  <  1:2491267/36‑1 (MQ=255)
                     gACCGTTACCGGCGGTTTTGATGAAGTACAGAATGt                <  1:4928570/36‑1 (MQ=255)
                       ccGTTACCGGCGGTTTTGATGAAGTACAGAATGttt              <  1:5402540/36‑1 (MQ=255)
                        cGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTg             <  1:4267760/36‑1 (MQ=255)
                         gTTACCGGCGGTTTTGATGAAGTACAGAATGTTTgg            <  1:5787833/36‑1 (MQ=255)
                              cggcgggtttttgtttttattttcaacgcgtttgaa       >  1:1670567‑M1/1‑6 (MQ=255)
                               ggcggTTTTTATGAAGTACAGAATGTCTGGCGTATc      <  1:3788161/36‑1 (MQ=37)
                                gcggTTTTGATGAAGTACAGAATGTTTGGCGTATCg     >  1:1426200/1‑36 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    >  1:6653248/1‑36 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    <  1:72058/36‑1 (MQ=255)
                                 cggTTTTGATGAAGTACAGAATGTTTGGCGTATCGt    <  1:483573/36‑1 (MQ=255)
                                  ggTTTTGATGAAGTACAGAATGTTTGGCGTATCGTg   >  1:7399117/1‑36 (MQ=255)
                                  ggTTTTGATGAAGTACAGAATGTTTGGCGTATCGTg   >  1:4702981/1‑36 (MQ=255)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  <  1:26987/36‑1 (MQ=255)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  >  1:4220100/1‑36 (MQ=255)
                                   gTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGc  >  1:5908390/1‑36 (MQ=255)
                                   |                                   
AGTCACCTACCGCTTTGAACTGACCGTTACCGGCGGTTTTGATGAAGTACAGAATGTTTGGCGTATCGTGC  >  REL606/840029‑840099

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG