Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,077,161 | C→A | 13.6% | C364F (TGC→TTC) | hybB ← | predicted hydrogenase 2 cytochrome b type component |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,077,161 | 0 | C→A | 13.6% | 7.0 ‑4.0 ‑0.0 | 57 | 1091 | hybB | predicted hydrogenase 2 cytochrome b type component |
Reads supporting (aligned to +/- strand): new base (1/7): ref base (30/19): total (31/26) | ||||||||||
Fisher's exact test strand distribution p-value = 1.81e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.94e-01 |
GTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAA > REL606/3077126‑3077195
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gTATCGGCAGTAGACGAATTAGTACGATGTAAgcgc < 1:4867153/36‑1 (MQ=255)
gTATCGGCAGTAGACGAAAGAGTATGAAGTAAacgc > 1:1354323/1‑36 (MQ=19)
tATCGGCAGTAGACGAATGAGTACGATGTAAGCGCa < 1:7194199/36‑1 (MQ=255)
tATCGGCAGTAGACGAATGAGTACGATGTAAGCGCa < 1:6168212/36‑1 (MQ=255)
tATCGGCAGTAGACGAATGAGTACGATGTAAGCGCa < 1:4435499/36‑1 (MQ=255)
tATCGGCAGTAGACGAATGAGTACGATGTAAGCGCa < 1:7118964/36‑1 (MQ=255)
tATCGACAGTAGACGAATGAGTACGATGTAAGCGCa < 1:7867679/36‑1 (MQ=255)
cGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAt < 1:607187/36‑1 (MQ=255)
cGGCAGTAGACGAATGAGTACGATGTAAGCGCAAAt > 1:4108887/1‑36 (MQ=255)
ggCAGTAGGCGAATGAGTACGATGTAAGCGCAAAtc < 1:6144067/36‑1 (MQ=255)
ggCAGTAGACGAATGAGTACGATGTAAGCGCAAAtc < 1:5462379/36‑1 (MQ=255)
ggCAGTAGACGAATGAGTACGATGTAAGCGCAAAtc < 1:2721082/36‑1 (MQ=255)
ggCAGTAGACGAATGAGCACGATGTCAGCGAAAAtc > 1:4399474/1‑36 (MQ=25)
gCAGTAGACGAATGAGTACGATGTAAGCGCAAAtct > 1:4771377/1‑36 (MQ=255)
cAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc < 1:1687953/36‑1 (MQ=255)
cAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc > 1:1894543/1‑36 (MQ=255)
cAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc > 1:6693189/1‑36 (MQ=255)
cAGTAGACGAATGAGTACGATGTAAGCGCAAAtctc > 1:2838397/1‑36 (MQ=255)
aGTAGACGAATGAGTACGATGTAAGCGCAAATCTCa > 1:5434842/1‑36 (MQ=255)
aGTAGACGAATGAGTACGATGTAAGCGCAAATCTCa < 1:5371067/36‑1 (MQ=255)
gTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa > 1:6826455/1‑36 (MQ=255)
gTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa < 1:704344/36‑1 (MQ=255)
gTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa > 1:5086686/1‑36 (MQ=255)
gTAGACGAATGAGTACGATGTAAGCGCAAATCTCaa < 1:3580272/36‑1 (MQ=255)
tAGACGAATGAGTACGATGTAAGCGCAAATCTCAAt < 1:6637301/36‑1 (MQ=255)
ataCGAATGAGTACGATGTAAGCGCAAATCTCAATa > 1:6035722/3‑36 (MQ=255)
aGACGAATGATTACGATGTAAGCGCAAATCTCAATa < 1:140590/36‑1 (MQ=255)
gACGAATGAGTACGATGTAAGCGCAAATCTCAATAg > 1:1106815/1‑36 (MQ=255)
gACGAATGAGTACGATGTAAGCGCAAATCTCAATAg > 1:4082804/1‑36 (MQ=255)
gACGAATGAGTACGATGTAAGCGCAAATCTCAATAg > 1:3872518/1‑36 (MQ=255)
aCGAATGAGTACGATGTAAGCGCAAATCTCAATAGc > 1:7150771/1‑36 (MQ=255)
aCGAATGAGTACGATGTAAGCGCAAATCTCAATAGc > 1:4429809/1‑36 (MQ=255)
cGAATGAGTACGATGTAAGCGCAAATCTCAATAGcc > 1:6431944/1‑36 (MQ=255)
cGAATGAGTACGATGTAAGCGCAAATCTCAATAGcc < 1:2799294/36‑1 (MQ=255)
gAATGAGTACGATGTAAGCGCAAATCTCAATAGCca < 1:7786804/36‑1 (MQ=255)
gAATGAGTACGATGTAAGCGCAAATCTCAATAGCca < 1:5403699/36‑1 (MQ=255)
aaTGAGTACGATGTAAGCGCAAATCTCAATAGCcac > 1:4700097/1‑36 (MQ=255)
aTGAGTACGATGGAAGCGCAAATCTCAATAGCcaca > 1:5010373/1‑36 (MQ=255)
tGAGTACGATGTAAGCGCAAATCTCAATAGCCACaa > 1:6423207/1‑36 (MQ=255)
tGAGTACGATGTAAGCGCAAATCTCAATAGCCACaa > 1:2135075/1‑36 (MQ=255)
tGAGTACGATGTAAGCGCAAATCTCAATAGCCACaa > 1:6775519/1‑36 (MQ=255)
gAGTAAGATGTAAGCGCAAATCTCAATAGCCACaaa < 1:8198487/36‑1 (MQ=255)
gAGCACGATGTAAGCGCAAATATTAACAGCCACaaa > 1:48974/1‑36 (MQ=19)
acaaTGCAAGCGAAAATCAAAATAGCCACAAAACCa < 1:4300993/33‑1 (MQ=12)
aagATGTAAGCAAAAATCTAAATAGCCACAAAACCa < 1:8368222/34‑1 (MQ=25)
aCGATGTAAGCGAAAATCTAAATAGCCACAAAACCa < 1:3341537/36‑1 (MQ=37)
aCGATGAAAGCGAAAATCTAAATAGCCACAAAACCa < 1:7701739/36‑1 (MQ=25)
aCGATAAAAGCCAAAGTCTAAATAGCCACAAAACCa < 1:4344097/36‑1 (MQ=12)
cGATGTAAGCGCAAATCTCAATAGCCACAAAACCaa > 1:5747126/1‑36 (MQ=255)
cGATGTAAGCGCAAATCTCAATAGCCACAAAACCaa > 1:486090/1‑36 (MQ=255)
gATGAAAGCAAAAATCTAAATAGCCACAAAACCAAt < 1:1338019/36‑1 (MQ=16)
aTGTAAGCGCAAATCTCAATAGCCACAAAACCAATa > 1:8072477/1‑36 (MQ=255)
aTGTAAGCGCAAATCTCAATAGCCACAAAACCAATa > 1:758364/1‑36 (MQ=255)
tGTAAGCGCAAATCTCAATAGCCACAAAACCAATAg > 1:6017626/1‑36 (MQ=255)
tGTAAGAGAAAATCTAAATAGCCACAAAACCAATAg < 1:1561554/36‑1 (MQ=21)
gTAAGCGCAAATCTCAATAGCCACAAAACCAATAGa > 1:6829845/1‑36 (MQ=255)
tAAGCGCAAATCTCAATAGCCACAAAACCAATAGaa > 1:3758576/1‑36 (MQ=255)
aaGCGCAAATCTCAATAGCCACAAAACCAATAGaaa > 1:4248201/1‑36 (MQ=255)
aaGCGCAAATCTCAATAGCCACAAAACCAATAGaaa > 1:6981142/1‑36 (MQ=255)
gcgcAAATCTCAATAGCCACAAAACCAATAGAAATc > 1:6755818/1‑36 (MQ=255)
gcAAATCTCAATAGCCACAAAACCAATAGAAATCaa > 1:7343851/1‑36 (MQ=255)
gcAAATCTCAATAGCCACAAAACCAATAGAAATCaa > 1:1596757/1‑36 (MQ=255)
gcAAATCTCAATAGCCACAAAACCAATAGAAATCaa > 1:6501160/1‑36 (MQ=255)
gcAAATCTCAATAGCCACAAAACCAATAGAAATCaa > 1:6656745/1‑36 (MQ=255)
gcAAATCTCAATAGCCACAAAACCAATAGAAATCaa > 1:6761956/1‑36 (MQ=255)
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GTATCGGCAGTAGACGAATGAGTACGATGTAAGCGCAAATCTCAATAGCCACAAAACCAATAGAAATCAA > REL606/3077126‑3077195
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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