Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 100% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.000)30 (0.900) 22/52 NT 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)23 (0.600) 20/60 NT 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774400‑2774468
                                   |                                 
ttCTAATTGTTGGGGTTCGAACGTAAGCCTCAGGtt                                   <  1:5156970/36‑1 (MQ=38)
ttCGATTTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                   <  1:5565176/36‑1 (MQ=255)
ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                   >  1:423182/1‑36 (MQ=255)
ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                   <  1:4258915/36‑1 (MQ=255)
  ctacatgtgttcagcatatagggggcctcgggtTGt                                 <  1:3878335‑M2/3‑1 (MQ=255)
   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                >  1:2633843/1‑36 (MQ=255)
   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                >  1:857101/1‑36 (MQ=255)
   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                <  1:924261/36‑1 (MQ=255)
     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                              <  1:4703233/36‑1 (MQ=255)
       tgtgttcagcatatagggggcctcgggtTGTACTGa                            >  1:4892034‑M2/29‑36 (MQ=255)
       tGTTTGGGTTCGAACGTCCGCCTCAGNNNGTCCTgc                            >  1:2012382/1‑35 (MQ=255)
       tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGa                            <  1:1765516/36‑1 (MQ=255)
        gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                           >  1:3991272/1‑36 (MQ=255)
         tgttcagcatatagggggcctcgggtTGTACTGAcc                          >  1:3769548‑M2/27‑36 (MQ=255)
          ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                         >  1:188366/1‑36 (MQ=255)
           ttcagcatatagggggcctcgggtTGTACTGAcccc                        >  1:3826141‑M2/25‑36 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                       >  1:1209331/1‑36 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                       <  1:4082024/36‑1 (MQ=255)
             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                      <  1:3459601/36‑1 (MQ=255)
             catcatatagggggcctcgggtTGTACTGACCCCaa                      <  1:987645‑M2/14‑1 (MQ=255)
             cagcatatagggggcctcgggtTGTACTGACCCCaa                      <  1:707666‑M2/14‑1 (MQ=255)
              agcatatagggggcctcgggtTGTACTGACCCCaaa                     >  1:4167776‑M2/22‑36 (MQ=255)
              agcatatagggggcctcgggtTGTACTGACCCCaaa                     <  1:3137023‑M2/15‑1 (MQ=255)
               ttCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                    <  1:1892630/36‑1 (MQ=255)
               ttCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                    <  1:2923022/36‑1 (MQ=255)
               gcatatagggggcctcgggtTGTACTGACCCCaaaa                    <  1:817432‑M2/16‑1 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                   >  1:4205345/1‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                   >  1:1712122/1‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                   >  1:101483/1‑36 (MQ=255)
                 cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAg                  >  1:3467840/1‑36 (MQ=255)
                 atatagggggcctcgggtTGTACTGACCCCAAAAAg                  >  1:2371042‑M2/19‑36 (MQ=255)
                 atatagggggcctcgggtTGTACTGACCCCAAAAAg                  >  1:685946‑M2/19‑36 (MQ=255)
                  tatagggggcctcgggtTGTACTGACCCAAAAAAGt                 >  1:3319914‑M2/18‑36 (MQ=255)
                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 <  1:4652493/36‑1 (MQ=255)
                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:2436110/1‑36 (MQ=255)
                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 <  1:5167089/36‑1 (MQ=255)
                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:1799117/1‑36 (MQ=255)
                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:2108925/1‑36 (MQ=255)
                   aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt                >  1:1448489/1‑36 (MQ=255)
                   aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt                <  1:2775176/36‑1 (MQ=255)
                     agggggcctcgggtTGTACTGACCCCAAAAAGTTgg              >  1:2514643‑M2/15‑36 (MQ=255)
                      gggggcctcgggtTGTACTGGCCCCAAAAAGTTGGa             <  1:3406796‑M2/23‑1 (MQ=255)
                      gggggcctcgggtTGTACTGACCCCAAACAGTTGGa             >  1:5848045‑M2/14‑36 (MQ=255)
                      gggggcctcgggtTGTACTGACCCCAAAAAGTTGGa             >  1:4524928‑M2/14‑36 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa             >  1:1197472/1‑36 (MQ=255)
                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa             >  1:2954461/1‑36 (MQ=255)
                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc            <  1:5646326/36‑1 (MQ=255)
                        gggcctcgggtTGTACTGACCCCAAAAAGTTGGACa           <  1:3463919‑M2/25‑1 (MQ=255)
                        aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa           <  1:1288954/36‑1 (MQ=255)
                        aaGCCTCAGGTTGTACTGACCCAAAAAAGTTGGACa           >  1:329648/1‑36 (MQ=255)
                         ggcctcgggtTGTACTGACCCCAAAAAGTTGGACAg          >  1:2962408‑M2/11‑36 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg          >  1:1391897/1‑36 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg          >  1:4290830/1‑36 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg          >  1:75356/1‑36 (MQ=255)
                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         >  1:5607730/1‑36 (MQ=255)
                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         <  1:5269537/36‑1 (MQ=255)
                           ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt        >  1:3134648/1‑36 (MQ=255)
                           ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt        <  1:89085/36‑1 (MQ=255)
                            ctcgggtTGTACTGACCCCAAAAAGTTGGACAGTTa       >  1:3205064‑M2/8‑36 (MQ=255)
                             tcgggtTGTACTGACCCCAAAAAGTTGGACAGTTaa      <  1:2347529‑M2/30‑1 (MQ=255)
                             tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa      >  1:943813/1‑36 (MQ=40)
                             tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa      <  1:5015313/36‑1 (MQ=40)
                             aaaGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa      >  1:3689950/3‑36 (MQ=17)
                              cgggtTGTACTGACCCCAAAAAGTTGGACAGTTaaa     >  1:5880490‑M2/6‑36 (MQ=255)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa     >  1:4083333/1‑36 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa     <  1:4117101/36‑1 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa     <  1:4732965/36‑1 (MQ=38)
                               gggtTGTACTGACCCCAAAAAGTTGGACAGTTAAac    <  1:16812‑M2/32‑1 (MQ=255)
                               gggtTGTACTGACCCCAAAAAGTTGGACAGTTAAac    >  1:4102121‑M2/5‑36 (MQ=255)
                               aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac    <  1:434524/36‑1 (MQ=38)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca   >  1:2328686‑M2/4‑36 (MQ=255)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca   >  1:4100918‑M2/4‑36 (MQ=255)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca   >  1:5094903‑M2/4‑36 (MQ=255)
                                ggtTGTACTGACCCCAAAAAGTTGGACAGTTAAaca   <  1:1423866‑M2/33‑1 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac  >  1:5387190‑M2/3‑36 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac  <  1:5275649‑M2/34‑1 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac  >  1:899011‑M2/3‑36 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGCTGGACAGTTAAacac  >  1:4156411‑M2/3‑36 (MQ=255)
                                 gTTGTAATGACCCCAAAAAGCCGGACAGTTAAacac  >  1:5374523/1‑36 (MQ=11)
                                   |                                 
TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774400‑2774468

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG