Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 16,972 | IS150 (–) +3 bp | 100% | intergenic (‑14/‑514) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 16972 = | 0 (0.000) | 30 (0.900) | 22/52 | NT | 100% | intergenic (‑14/‑516) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 16974 | 0 (0.000) | 23 (0.600) | 20/60 | NT | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region |
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................ > REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > REL606/2774435‑2774468
CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT < 1:3878335/36‑1 (MQ=32)
TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA > 1:4892034/1‑36 (MQ=38)
TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC > 1:3769548/1‑36 (MQ=38)
TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC > 1:3826141/1‑36 (MQ=38)
catCATATAGGGGGCCTCGGGTTGTACTGACCCCAA < 1:987645/33‑1 (MQ=255)
CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAA < 1:707666/36‑1 (MQ=40)
AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA > 1:4167776/1‑36 (MQ=255)
AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA < 1:3137023/36‑1 (MQ=255)
GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA < 1:817432/36‑1 (MQ=255)
ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG > 1:2371042/1‑36 (MQ=255)
ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG > 1:685946/1‑36 (MQ=255)
TATAGGGGGCCTCGGGTTGTACTGACCCAAAAAAGT > 1:3319914/1‑36 (MQ=255)
AGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGG > 1:2514643/1‑36 (MQ=255)
GGGGGCCTCGGGTTGTACTGGCCCCAAAAAGTTGGA < 1:3406796/36‑1 (MQ=255)
GGGGGCCTCGGGTTGTACTGACCCCAAACAGTTGGA > 1:5848045/1‑36 (MQ=255)
GGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGA > 1:4524928/1‑36 (MQ=255)
GGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA < 1:3463919/36‑1 (MQ=255)
GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG > 1:2962408/1‑36 (MQ=255)
CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:3205064/1‑36 (MQ=255)
TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:2347529/36‑1 (MQ=255)
CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:5880490/1‑36 (MQ=40)
GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:4102121/1‑36 (MQ=38)
GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:16812/36‑1 (MQ=38)
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................ > REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > REL606/2774435‑2774468
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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