Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 100% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)41 (1.000) 28/64 NT 100% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 0 (0.040)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =0 (0.000)55 (1.340) 33/64 NT 100% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

TGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG.................................  <  REL606/1821559‑1821525
..................................ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3651091‑3651125
                                                                      
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                 >  1:4097900/1‑36 (MQ=255)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                 >  1:719027/1‑36 (MQ=255)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                 >  1:4808562/1‑36 (MQ=255)
   GCCTTAATGGAGCATTTTCTTTCTGGCGACCATGTA                                 <  1:4860952/36‑1 (MQ=255)
    CCTTAATGGAGCATTTTCTTTCTGGCGACCATGTAC                                <  1:1325722/36‑1 (MQ=255)
     CTTAATGGAGCATTTTCTTTCTGGCGACCATGTACT                               <  1:4931497/36‑1 (MQ=255)
      TTAATGGAGCATTTTCTTTCTGGCGACCATGTACTG                              >  1:4309354/1‑36 (MQ=255)
      TTAATGGAGCATTTTCTTTCTGGCGACCATGTACTG                              >  1:3253547/1‑36 (MQ=255)
      TTAATGGAGCATTTTCTTTCTGGCGACCATGTACTG                              >  1:1834347/1‑36 (MQ=255)
       TAATGGCGCATTTTCTTTCTGGCGACCATGTACTGC                             <  1:1695707/36‑1 (MQ=255)
        AATGGAGCATTTTCTTTCTGGCGACCATGTACTGCA                            >  1:1893187/1‑36 (MQ=255)
         ATGGAGCATTTTCTTTCTGGCGACCATGTACTGCAC                           <  1:3864065/36‑1 (MQ=255)
          TGGAGCATTTTCTTTCTGGCGACCATGTACTGCACC                          <  1:403302/36‑1 (MQ=255)
          TGGAGCATTTTCTTTCTGGCGACCATGTACTGCACC                          <  1:4586627/36‑1 (MQ=255)
          TGGAGCATTTTCTTTCTGGCGACCATGTACTGCACC                          <  1:1264974/36‑1 (MQ=255)
           GGAGCATTTTCTTTCTGGCGACCATGTACTGCACCC                         >  1:4995754/1‑36 (MQ=255)
             AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                       <  1:3684199/36‑1 (MQ=255)
             AGCATTTTCTTTCTGGCGACCATGTACTGCACCCAT                       <  1:2448874/36‑1 (MQ=255)
              GCATTTTCTTTCTGGCGACCATGTACTGCACCCATT                      <  1:2818787/36‑1 (MQ=255)
               CATTTTCTTTCTGGCGACCATGTACTGCACCCATTT                     <  1:1702492/36‑1 (MQ=255)
                ATTTTCTTTCTGGCGACCATGTACTGCACCCATTTT                    <  1:98618/36‑1 (MQ=40)
                 TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                   <  1:2812768/36‑1 (MQ=38)
                 TTTTCTTTCTGGCGACCATGTACTGCACCCATTTTG                   >  1:1779516/1‑36 (MQ=38)
                  TTTCTTTCTGGCGACCATGTACTGCACCCATTTTGT                  <  1:1736325/36‑1 (MQ=35)
                  TTTCTTTCTGGCGACCATGTACTGCACCCATTTTGT                  <  1:1219955/36‑1 (MQ=35)
                  TTTCTTTCTGGCGACCATGTACGGCACCCATTTTGT                  <  1:4717525/36‑1 (MQ=255)
                   TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                 <  1:2581843/36‑1 (MQ=32)
                   TTCTTTCTGGCGACCATGTACTGCACCCATTTTGTT                 <  1:5333950/36‑1 (MQ=32)
                    TCTTTCTGGCTACCATGTACTGCACCCATTTTGTTG                <  1:4975862/36‑1 (MQ=0)
                    TCTTTCTGGCGACCATGTACTGCACCCATTTTGTTG                <  1:824119/36‑1 (MQ=1)
                    TCTTTCTGGCGACCATGTACTGCACCCATTTTGTTG                <  1:1973363/36‑1 (MQ=1)
                     CTTTCTGGCGACCATGTACTGCACCCATTTTGTTGG               >  1:1299822/1‑36 (MQ=1)
                      TTTCTGTCGACCATGTACTGCACCCATTTTGTTGGA              <  1:1483315/36‑1 (MQ=0)
                      TTTCTGGCGACCATGTACTGCACCCATTTTGTTGGA              >  1:2458162/1‑36 (MQ=1)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC             <  1:5322695/36‑1 (MQ=1)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC             <  1:5926677/36‑1 (MQ=1)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC             <  1:3233891/36‑1 (MQ=1)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC             <  1:2824893/36‑1 (MQ=1)
                       TTCTGGCGACCATGTACTGCACCCATTTTGTTGGAC             <  1:1554556/36‑1 (MQ=1)
                        TCTGGCGACCATGTACTGCACCCATTTTGTTGGACG            <  1:4746049/36‑1 (MQ=1)
                          TGGCGACCATGTACTGCACCCATTTTGTTGGACGAT          <  1:3432307/36‑1 (MQ=1)
                           GGCGACCATGTACTGCACCCATTTTGTTGGACGATG         >  1:4340277/1‑36 (MQ=1)
                            GCGACCATGTACTGCACCCATTTTGTTGGACGATGA        <  1:3830261/36‑1 (MQ=1)
                             CGACCATGTACTGCACCCATTTTGTTGGACGATGAA       <  1:4898083/36‑1 (MQ=1)
                             CGACCATGTACTGCACCCATTTTGTTGGACGATGAA       <  1:5511555/36‑1 (MQ=1)
                              GACCATGTACTGCACCCATTTTGTTGGACGATGAAA      >  1:2046263/1‑36 (MQ=1)
                               ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:1984244/1‑36 (MQ=1)
                               ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:1957766/1‑36 (MQ=1)
                               ACCATGTACTGCACCCATTTTGTTGGACGATGAAAT     <  1:569662/36‑1 (MQ=1)
                                CCATGTACTGCACCCATTTTGTTGGACGATGAAATG    <  1:937589/36‑1 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:4309266/1‑36 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:3407446/1‑36 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:3144009/1‑36 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:1475053/1‑36 (MQ=1)
                                 CATGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:1124715/1‑36 (MQ=1)
                                                                      
TGTGCCTTAATGGAGCATTTTCTTTCTGGCGACCATG.................................  <  REL606/1821559‑1821525
..................................ATGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3651091‑3651125

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG