Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 54 [3] [0] 44 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)37 (0.670) 27/64 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 0 (0.000)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG...................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  REL606/3901931‑3901966
                                                                         
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   <  1:1204577/36‑1 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   <  1:2697924/36‑1 (MQ=1)
        TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC                               <  1:24570/36‑1 (MQ=1)
        TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC                               >  1:7447282/1‑36 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCa                              >  1:6944651/1‑35 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              <  1:1530738/36‑1 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              >  1:3832823/1‑36 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              >  1:3425479/1‑36 (MQ=1)
          ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA                             >  1:6861061/1‑36 (MQ=1)
          ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA                             <  1:3216303/36‑1 (MQ=1)
           CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG                            <  1:6193507/36‑1 (MQ=1)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                          >  1:4716605/1‑36 (MQ=1)
              TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG                         <  1:6601788/36‑1 (MQ=1)
              TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG                         <  1:1182490/36‑1 (MQ=1)
                 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC                      <  1:3280724/36‑1 (MQ=1)
                   CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG                    >  1:880125/1‑36 (MQ=1)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                   >  1:2898066/1‑36 (MQ=1)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                   <  1:2095577/36‑1 (MQ=1)
                     TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA                  <  1:934093/36‑1 (MQ=32)
                      TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC                 <  1:2344073/36‑1 (MQ=35)
                        TGGGGTCAGTACAGGTTGCCCAGGTGATCAGCACGC               <  1:5586980/36‑1 (MQ=38)
                        TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC               <  1:178612/36‑1 (MQ=38)
                        TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC               >  1:6120011/1‑36 (MQ=38)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC              <  1:4938404/36‑1 (MQ=38)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC              <  1:2951071/36‑1 (MQ=38)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC              >  1:7129715/1‑36 (MQ=38)
                          GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG             >  1:6339565/1‑36 (MQ=38)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC           <  1:3540023/36‑1 (MQ=38)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC           <  1:6410723/36‑1 (MQ=38)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC           >  1:5843826/1‑36 (MQ=38)
                               AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG        <  1:4306323/36‑1 (MQ=35)
                               AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG        <  1:4718499/36‑1 (MQ=35)
                               AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG        <  1:4545028/36‑1 (MQ=35)
                                 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA      >  1:3241821/1‑36 (MQ=1)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     <  1:4427222/36‑1 (MQ=1)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     >  1:4986518/1‑36 (MQ=1)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     >  1:7877541/1‑36 (MQ=1)
                                                                         
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG...................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  REL606/3901931‑3901966

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG