New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 31070538 (0.930)3 (0.070) 3/50 NT 8.6% coding (1279/1548 nt) yahF predicted acyl‑CoA synthetase with NAD(P)‑binding domain and succinyl‑CoA synthetase domain
?REL606 580473 = 26 (0.450)coding (857/3144 nt) cusA copper/silver efflux system, membrane component

TGATCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCGGATTTGGATCG  >  REL606/310673‑310740
                                |                                   
tGATCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGa                                  <  1:4187891/36‑1 (MQ=255)
 gATCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGAt                                 <  1:4941909/36‑1 (MQ=255)
  agcGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATc                                <  1:3910991/34‑1 (MQ=255)
  aTCGAAGAAGCGCGCGATCCAGAAGTGGCGGggggg                                >  1:5017828‑M1/1‑31 (MQ=255)
   tCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCg                               <  1:1171220/36‑1 (MQ=255)
   tCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCg                               <  1:2023368/36‑1 (MQ=255)
    cGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCGt                              <  1:5824319/36‑1 (MQ=255)
    cGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCGt                              <  1:6048273/36‑1 (MQ=255)
    cGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCGt                              <  1:1266273/36‑1 (MQ=255)
     gaagaaGCGCGCGATCCAGAAGTGGCGGggggggtg                             >  1:1638501‑M1/1‑28 (MQ=255)
      aagaagCGCGCGATCCAGAAGTGGCGGggggggtgg                            >  1:5662320‑M1/1‑27 (MQ=255)
       agaagCGCGCGATCCAGAGGTGGCGGTGATCGTgct                           <  1:2637045/36‑3 (MQ=38)
       agaagCGCGCGATCCAGAAGTGGCGGTGATCGTGAt                           <  1:703159/36‑1 (MQ=255)
       agaagCGCGCGATCCAGAAGTGGCGGTGATCGTGAt                           <  1:4616080/36‑1 (MQ=255)
       agaagCGCGCGATCCAGAAGTGGCGGTGATCGTGAt                           <  1:1058341/36‑1 (MQ=255)
        gaagCGCGCGATCCAGAAGTGGCGGTGATCGTGATg                          <  1:1374986/36‑1 (MQ=255)
            cgcgcgATCCAGAAGTGGCGGTGATCGTGATGGAtt                      <  1:4445744/36‑1 (MQ=255)
            cgcgcgATCCAGAAGTGGCGGTGATCGTGATGGAtt                      <  1:1114596/36‑1 (MQ=255)
              cgcgATCCAGAAGTGGCGGTGATCGTGATGGAtttt                    <  1:3195877/36‑1 (MQ=255)
                cgATCCAGAAGTGGCGGTGATCGTGATGGATTTtgt                  <  1:6912561/36‑1 (MQ=255)
                cgATCCAGAAGTGGCGGTGATCGTGATGGATTTtgt                  <  1:1260691/36‑1 (MQ=255)
                 gATCCAGAAGTGGCGGTGATCGTGATGGATTTtgtg                 <  1:6907384/36‑1 (MQ=255)
                  aTCCAGAATTGGCGGTGATCGTGCTGGATTTTGTGc                <  1:793464/36‑1 (MQ=37)
                  aTCCAGAAGTGGCGGTGATCGTGATGGATTTTGTGc                <  1:5512973/36‑1 (MQ=255)
                   tCCAGAAGTGGCGGTGATCGTGATGGATTTTGTGCt               <  1:1190870/36‑1 (MQ=255)
                     cAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCg             <  1:4016898/36‑1 (MQ=255)
                     cAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCg             <  1:2401133/36‑1 (MQ=255)
                     cAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCg             <  1:5554288/36‑1 (MQ=255)
                     cAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCg             <  1:4335308/36‑1 (MQ=255)
                       gAAGTGGCGGgcggggtggtgatcctgcgatccggc           <  1:3116353‑M1/36‑27 (MQ=255)
                        aaGTGGCGGTGATCGTGATGGATTTTGTGCTCGGAt          <  1:2566674/36‑1 (MQ=255)
                        aaGTGGCGGTGATCGTGATGGATTTTGTGCTCGGAt          <  1:3955857/36‑1 (MQ=255)
                         attGGCGGTGATCGTGATGGATTTTGTGCTCGGAtt         <  1:7447485/34‑1 (MQ=255)
                         aGTGGCGGTGATCGTGATGGATTTTGTGCTCGGAtt         <  1:482043/36‑1 (MQ=255)
                          gTGGCGGgcggggtggtgatcctgcgatccggcaaa        >  1:6410201‑M1/1‑7 (MQ=255)
                          gTGGCGGgcgggggggtgatcctgcgatccggcaaa        >  1:5364130‑M1/1‑7 (MQ=255)
                          gTGGCGGTGATCGTGATGGATTTTGTGCTCGGAttt        <  1:6997545/36‑1 (MQ=255)
                           gggcgggcggggtggtgatcctgctatccggcaaaa       <  1:2549052‑M1/35‑31 (MQ=255)
                            ggcgggcggggtggtgatcctgcgatccggcaaaaa      <  1:3915771‑M1/36‑32 (MQ=255)
                            ggCGGTGATCGTGATGGATTTTGTGCTCGGATTTgg      <  1:6277224/36‑1 (MQ=255)
                             gcgggcggggtggtgatcctgcgctccggcaaaaac     >  1:3225286‑M1/1‑4 (MQ=255)
                             gcgggcggggtggtgatcctgcgatccggcaaaaac     <  1:5189818‑M1/36‑33 (MQ=255)
                              cgggcggggtggtgatcctgcgatccggcaaaaacg    >  1:1176380‑M1/1‑3 (MQ=255)
                              cGGTGATCGTGATGGATTTTGTGCTCGGATTTGGAt    <  1:75838/36‑1 (MQ=255)
                               gggcggggtggtgatcctgcgatccggcaaaaacgc   >  1:1430831‑M1/1‑2 (MQ=255)
                               gggcggggtggtgatcctgcgatccggcaaaaacgc   <  1:3413056‑M1/36‑35 (MQ=255)
                               gggcggggtggtgatcctgcgatccggcaaaaacgc   >  1:4986751‑M1/1‑2 (MQ=255)
                               ggTGGTCGTGATGGATTTTGTGCTCGGATTTGGATc   <  1:4028381/36‑1 (MQ=255)
                               ggTGATCGTGATGGATTTTGTGCTCGGATTTGGATc   <  1:1901908/36‑1 (MQ=255)
                               ggTGATCGTGATGGATTTTGTGCTCGGATTTGGATc   <  1:6155083/36‑1 (MQ=255)
                               ggTGATCGTGATGGATTTTGTGCTCGGATTTGGATc   >  1:5746491/1‑36 (MQ=255)
                               ggTGATCGTGATGGATTTTGTGCTCGGATTTGGATc   <  1:4220135/36‑1 (MQ=255)
                                ggcggggtggtgatcctgcgatccggcaaaaacgcc  >  1:5600625‑M1/1‑1 (MQ=255)
                                gTGATCGTGATGGATTTTGTGCTCGGATTTGGATCg  >  1:17942/1‑36 (MQ=255)
                                gTGATCGTGATGGATTTTGTGCTCGGATTTGGATCg  <  1:5315232/36‑1 (MQ=255)
                                |                                   
TGATCGAAGAAGCGCGCGATCCAGAAGTGGCGGTGATCGTGATGGATTTTGTGCTCGGATTTGGATCG  >  REL606/310673‑310740

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG