Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,255,385 | A→T | 11.1% | V488E (GTA→GAA) | yhbX ← | predicted hydrolase, inner membrane |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,255,385 | 0 | A→T | 11.1% | 3.2 ‑3.8 ‑0.0 | 48 | 1463 | yhbX | predicted hydrolase, inner membrane |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (18/24): total (24/24) | ||||||||||
Fisher's exact test strand distribution p-value = 2.19e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.76e-01 |
TTCCTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATCCACGCATTAATAAGGTAATTATTGTA > REL606/3255351‑3255419
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ttCCTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTAc < 1:2731059/36‑1 (MQ=255)
tCCTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTAcc < 1:902393/36‑1 (MQ=255)
cTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTAcccc < 1:3934016/36‑1 (MQ=255)
cTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTAcccc < 1:1917109/36‑1 (MQ=255)
cTCAAGCGTTTGCGGCTGGTGCGGCTTTTTTTcccc > 1:5626848/1‑36 (MQ=19)
tCAAGCGTTTGCGGCTGTTTCGGCTTTTTTTcaccc > 1:1949479/1‑36 (MQ=16)
tCAAGCGTTTGCGGCTGTTCCGGCTTTGTTAccccc < 1:5417347/36‑1 (MQ=255)
ctaaGCGTTTGCGGCTGTTCCGGCTTTGTTAccccc < 1:7811447/34‑1 (MQ=255)
aaGCGTTTGCGGCTGTTTCGGCTTTTTTTtccccct > 1:3752580/1‑34 (MQ=12)
aaGCGTTTGCGGCTGTTCCGGCTTTTTTAcccccct > 1:1453135/1‑34 (MQ=37)
aaGCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCAt < 1:4327481/36‑1 (MQ=255)
aGCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATc < 1:4765381/36‑1 (MQ=255)
aGCGTTTGCGGCTGGTTTGGGTTTTTTTTCCCCATc > 1:4914743/1‑36 (MQ=2)
gCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATcc < 1:6249813/36‑1 (MQ=255)
gCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATcc < 1:1454579/36‑1 (MQ=255)
gCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATcc < 1:3355611/36‑1 (MQ=255)
gCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATcc < 1:3592770/36‑1 (MQ=255)
cGTTTGCGGCTGTTCCGGGTTTTTTATCCCCCTccc > 1:5118883/1‑35 (MQ=16)
cGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATCCa < 1:5719222/36‑1 (MQ=255)
gTTTGCGGCTGTTTCGGGTTTTTTACCCCCATCCAc > 1:374357/1‑36 (MQ=25)
gTTTGCGGCTGTTTCGGCTTTGTTTCCCCCCCCCAc > 1:3368911/1‑36 (MQ=16)
gTTTGCGGCTGTTCCGGCTTTGTTACCCCCATCCAc < 1:3673279/36‑1 (MQ=255)
tttGCGTCTGTTCCGGCTTTGTTACCCCCATCCACg < 1:1727122/36‑1 (MQ=255)
tttGCGGCTGTTCCGGCTTTTTTTCCCCCCTCCACg > 1:6205295/1‑36 (MQ=25)
ttGCGGCTGTTCCGGCTTTGTTACCCCCATCCACGc < 1:2490409/36‑1 (MQ=255)
ttGCGGCTGTTCCGGCTTTGTTACCCCCATCCACGc < 1:7365272/36‑1 (MQ=255)
ggCTGTTCCGGCTTTGTTACCCCCATCCACGCATta > 1:4862713/1‑36 (MQ=255)
gCTGTTCCGGCTTTGTTACCCCCATCCACGCATtaa < 1:7681434/36‑1 (MQ=255)
gCTGTTCCGGCTTTGTTACCCCCATCCACGCATtaa < 1:113410/36‑1 (MQ=255)
gCTGTTCCGGCTTTGTTACCCCCATCCACGCATtaa < 1:2106883/36‑1 (MQ=255)
cTGTTCCGGCTTTGTTACCCCCATCCACGCATtaat > 1:2993502/1‑36 (MQ=255)
tGTTCCGGCTTTGTTACCCCCATCCACGCATtaata > 1:3461813/1‑36 (MQ=255)
gTTCCGGCTTTGTTACCCCCATCCACGCATtaataa > 1:2245213/1‑36 (MQ=255)
tCCGGCTTTGTTACCCCCATCCACGCATTAATAAgg > 1:6749893/1‑36 (MQ=255)
cGGCTTTGTTACCCCCATCCACGCATTAATAAGGTa > 1:6591454/1‑36 (MQ=255)
ggCTTTGTTACCCCCATCCACGCATTAATAAGGTaa > 1:6731616/1‑36 (MQ=255)
ggCTTTGTTACCCCCATCCACGCATTAATAAGGTaa > 1:1684129/1‑36 (MQ=255)
cTTTGTTACCCCCATCCACGCATTAATAAGGTAatt < 1:6308909/36‑1 (MQ=255)
cTTTGTTACCCCCATCCACGCATTAATAAGGTAatt < 1:77640/36‑1 (MQ=255)
tttGTTACCCCCATCCACGCATTAATAAGGTAatta > 1:4454136/1‑36 (MQ=255)
tGTTACCCCCATCCACGCATTAATAAGGTAattatt > 1:263293/1‑36 (MQ=255)
tGTTACCCCCATCCACGCATTAATAAGGTAattatt > 1:5523260/1‑36 (MQ=255)
tGTTACCCCCATCCACGCATTAATAAGGTAattatt < 1:4073763/36‑1 (MQ=255)
gTTACCCCCATCCACGCATTAATAAGGTAATTATTg < 1:3976425/36‑1 (MQ=255)
gTTACCCCCATCCACGCATTAATAAGGGAATTATTg > 1:7274242/1‑36 (MQ=255)
ttACCCCCATCCACGCATTAATAAGGTAATTATTGt > 1:3064290/1‑36 (MQ=255)
ttACCCCCATCCACGCATTAATAAGGTAATTATTGt > 1:1864461/1‑36 (MQ=255)
tACCCCCATCCACGCATTAATAAGGTAATTATTGTa > 1:7678705/1‑36 (MQ=255)
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TTCCTCAAGCGTTTGCGGCTGTTCCGGCTTTGTTACCCCCATCCACGCATTAATAAGGTAATTATTGTA > REL606/3255351‑3255419
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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