Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 703,479 | C→G | 31.3% | R117P (CGC→CCC) | kdpE ← | DNA‑binding response regulator in two‑component regulatory system with KdpD |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 703,479 | 0 | C→G | 31.3% | 6.0 ‑3.7 0.0 | 27 | 350 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
Reads supporting (aligned to +/- strand): new base (9/0): ref base (10/8): total (19/8) | ||||||||||
Fisher's exact test strand distribution p-value = 2.58e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGCGGATCGGGCGCGGTGGTGGCAGAGTGGCGGCGTAATGCGACGCGCAGACGGGCCTGCAATTCGCCA > REL606/703446‑703514
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aGCGGATCGGGCGCGGTGGTGGCAGAGTGGGGGGGt > 1:6717386/1‑36 (MQ=37)
aGCGGATCGGGCGCGGTGGTGGCAGAGTGGCGGGGt > 1:5490724/1‑36 (MQ=255)
gATCGGGCGCGGTGGTGGCAGAGTGGCGGGGTAATg > 1:5836746/1‑36 (MQ=255)
gATCGGGCGCGGTGGTGGCAGAGTGGCGGGGCAATg > 1:5260867/1‑36 (MQ=37)
aTCGGGCGCGGTGGTGGCAGAGTGGCGGGGCAATgg > 1:1132515/1‑35 (MQ=37)
aTCGGGCGCGGTGGTGGCAGAGTGGCGGCGGAATgg > 1:6472907/1‑35 (MQ=255)
tCGGGCGCGGTGGTGGCAGAGTGGCGGGGTAAttgg > 1:6930682/1‑33 (MQ=37)
cGGGCGCGGTGGTGGCAGAGTGGCGGCGTAATGCGa < 1:1730379/36‑1 (MQ=255)
gggCGCGGTGGTGGCAGAGTGGCGGGGTTATGGGAc > 1:5779941/1‑36 (MQ=25)
gggCGCGGTGGTGGCAGAGTGGCGGGGTAATGCggg > 1:4864720/1‑34 (MQ=38)
gggCGCGGTGGTGGCAGAGTGGCGGCGCGATGTGAc > 1:4869788/1‑36 (MQ=25)
gcgcGGTGGTGGCAGAGTGGCGGCGTAATGCGAcgc < 1:2887460/36‑1 (MQ=255)
gcgcGGGGGTGGCAGAGTGGAGGGGTATTGCGaaga > 1:4870581/1‑33 (MQ=16)
cgcgGTGGTGGCAGAGTGGCGGCGTAATGTGAcggg > 1:4479218/1‑34 (MQ=38)
ggtggtGGCAGAGTGGCGGCGTAATGCGACgcgccg > 1:3130422/1‑34 (MQ=255)
gtggCAGAGTGGCGGCGTAATGCGACGCGCAGACgg < 1:2602743/36‑1 (MQ=255)
tggCAGAGTGGCGGCGTAATGCGACGCGCAGACggg < 1:2768831/36‑1 (MQ=255)
ggCAGAGTGGCGGCGTAATTCGACGCGCAGACGGGc > 1:1780081/1‑36 (MQ=255)
ggCAGAGTGGCGGCGTAATGCGACGCGGAGACgggg > 1:2341882/1‑35 (MQ=255)
ggCAGAGTGGCGGCGTAATGCGACGCGCAGACGGGc < 1:6178926/36‑1 (MQ=255)
gCAGAGTGGCGGCGTAATGCGACGCGCAGACggggc > 1:3367838/1‑34 (MQ=255)
cAGAGTGGCGGCGTAATGCGACGCGCAGACGGGGCt > 1:5955187/1‑36 (MQ=255)
agagTGGCGGCGTAATGCGACGCGCAGACGGGCCTg < 1:5385213/36‑1 (MQ=255)
agTGGCGGCGTAATGCGACGCGCAGACGGGCCTGCa < 1:3726028/36‑1 (MQ=255)
tGGCGGCGTAATGCGACGCGCAGACGGGCCTGCAAt > 1:7847894/1‑36 (MQ=255)
tGGCGGCGTAATGCGACGCGCAGACGGGCCTGCAAt < 1:5834108/36‑1 (MQ=255)
tGGCGGCGTAATGCGACGCGCAGACGGGCCTGCAAt > 1:4286666/1‑36 (MQ=255)
ggcggcGTAATGCGACGCGCAGACGGGCCTGCAAtt < 1:6137095/36‑1 (MQ=255)
agcggcgTAATGCGACGCGCAGACGGGCCTGCAAtt < 1:4676309/35‑1 (MQ=255)
gcggcgTAATGCGACGCGCAGACGGGCCTGCAATTc > 1:2098670/1‑36 (MQ=255)
cggcgTAATGCGACGCGCAGACGGGCCTGCAATTCg > 1:6113788/1‑36 (MQ=255)
ggcgTAATGCGACGCGCAGACGGGCCTGCAATTCGc > 1:3857900/1‑36 (MQ=255)
ggcgTAATGCGACGCGCAGACGGGCCTGCAATTCGc < 1:3940595/36‑1 (MQ=255)
ggcgTAATGCGACGCGCAGACGGGCCTGCAATTCGc > 1:1160132/1‑36 (MQ=255)
ggcgTAATGCGACGCGCAGACGGGCCTGCAATTCGc > 1:7285448/1‑36 (MQ=255)
gcgTCATGCGACGCGCAGACGGGCCTGCAATTCGcc < 1:263514/36‑1 (MQ=255)
gcgTAATGCGACGCGCAGACGGGCCTGCAATTCGcc > 1:2407503/1‑36 (MQ=255)
gcgTAATGCGACGCGCAGACGGGCCTGCAATTCGcc > 1:6582022/1‑36 (MQ=255)
cgTAATGCGACGCGCAGACGGGCCTGCAATTCGCCa > 1:6912106/1‑36 (MQ=255)
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AGCGGATCGGGCGCGGTGGTGGCAGAGTGGCGGCGTAATGCGACGCGCAGACGGGCCTGCAATTCGCCA > REL606/703446‑703514
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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