Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,516,335 | A→T | 15.4% | intergenic (+166/+417) | yjhR → / ← yjhS | frameshift suppressor contains phospolipase D/nuclease; b4308_2/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,516,335 | 0 | A→T | 15.4% | 4.7 ‑3.4 0.0 | 26 | intergenic (+166/+417) | yjhR/yjhS | frameshift suppressor contains phospolipase D/nuclease; b4308_2/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (8/14): total (12/14) | ||||||||||
Fisher's exact test strand distribution p-value = 3.31e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CATAATGCGCCTGGGATTAATGGC.GGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAAT > REL606/4516301‑4516370
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cATAATGCGCCTGGGATTAATGGC.GGGTGCTTTTAg < 1:4067467/36‑1 (MQ=255)
gcCTGGGATTAATGGC.GGGTGCTTTTAGGAATgaaa < 1:3940158/36‑1 (MQ=255)
tGGGATTAATGGC.GGGTGCTTTTAGGAATgaaagaa < 1:991648/36‑1 (MQ=255)
gggATTAATGGCGGGGGGGTTTTTGAAATgaaaaaa > 1:1255692/1‑36 (MQ=2)
ggATTAATGGC.GGGTGCTTTTAGGAATGAAAGaaaa < 1:1713147/36‑1 (MQ=255)
ggATTAATGGC.GGGGGGTTTTTTTAATGTAAAaaaa > 1:3989419/1‑36 (MQ=2)
ggATTAATGGC.GGGGGCGTTTTTGTAAGAAAAaaaa > 1:1434811/1‑36 (MQ=2)
aTTAATGGC.GGGCGCTTTTTGGTATTATAGAAAAta > 1:1226057/1‑35 (MQ=12)
ttAATGGC.GGTTGCTTTTAGGAATGAAAGAAAATgc < 1:5334329/36‑1 (MQ=255)
tAATGGC.GGGTGCTTTTAGGAATGAAAGAAAATgca < 1:2469853/36‑1 (MQ=255)
aTGGC.GGGTGCTTTTAGGAATGAAAGAAAATgcaag < 1:2094936/36‑1 (MQ=255)
tGGC.GGGTGCTTTTAGGAATGAAAGAAAATgcaagc > 1:4192863/1‑36 (MQ=255)
gC.GGGTGCTTTTAGGAATGAAAGAAAATgcaagcaa < 1:3754210/36‑1 (MQ=255)
gC.GGGTGCTTTCAGGAATGAAAGAAAATgcaagcaa < 1:5352616/36‑1 (MQ=255)
gggTGCTTTTAGGAATGAAAGAAAATGCAAGCaata > 1:1675664/1‑36 (MQ=255)
gggTGCTTTTAGGAATGAAAGAAAATGCAAGCaata < 1:5292756/36‑1 (MQ=255)
ggTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa > 1:5897844/1‑36 (MQ=255)
ggTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa > 1:4094807/1‑36 (MQ=255)
gTGCTTTTAGGAATGAAAGAAAATGCAAGCaataat < 1:1353332/36‑1 (MQ=255)
atGCTTTAAGGAATTAAAGAAAATGCAAGCaataat < 1:4200655/35‑1 (MQ=37)
tGCTTTTAGGAATGAAAGAAAATGCAAGCAataata > 1:403912/1‑36 (MQ=255)
ttttAGGAATGAAAGAAAATGCAAGCAataatataa < 1:4133224/36‑1 (MQ=255)
ttttAGGAATGAAAGAAAATGCAAGCAataatataa > 1:5867290/1‑36 (MQ=255)
ttAGGAATGAAAGAAAATGCAAGCAAtaatataata > 1:5651891/1‑36 (MQ=255)
ttAGGAATGAAAGAAAATGCAAGCAAtaatataata < 1:2258455/36‑1 (MQ=255)
ttAGGAATGAAAGAAAATGCAAGCAAtaatataata > 1:1050353/1‑36 (MQ=255)
aGGAATGAAAGAAAATGCAAGCAATAATATaataat > 1:2735433/1‑36 (MQ=255)
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CATAATGCGCCTGGGATTAATGGC.GGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAAT > REL606/4516301‑4516370
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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