Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,590,360 | 0 | T→C | 6.8% | 0.2 ‑1.6 ‑0.0 | 79 | 392 | dnaT | primosomal protein I |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/5): ref base (36/36): total (37/42) | ||||||||||
Fisher's exact test strand distribution p-value = 2.04e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.81e-01 |
TTTGTTGCCACTGCACATGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGCAATGAATGAGGCCAGTTCT > REL606/4590325‑4590395
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tttGTTGCCACTGCACATGGTGAAAGACTTTACCtt > 1:5004328/1‑36 (MQ=255)
tttGTTGCCACTGCACATGGTGAAAGACTTTACCtt > 1:4163259/1‑36 (MQ=255)
tttGTTGCCACTGCACATGGTGAAAGACTTTACCtt > 1:1488956/1‑36 (MQ=255)
tttGTTGCCACTGCACATGGTGAAAGACTTTACCtt < 1:3306485/36‑1 (MQ=255)
tttGTTGCCACTGCACATGGTGAAAGACTTTACCtt < 1:7251896/36‑1 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc < 1:5898314/36‑1 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc < 1:4690620/36‑1 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc < 1:6802352/36‑1 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc < 1:699130/36‑1 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc > 1:7915898/1‑36 (MQ=255)
ttgttgCCACTGCACATGGTGAAAGACTTTACCTTc < 1:7674720/36‑1 (MQ=255)
tgttgCCACTGCACATGGTGAAAGCCTTTACCTTcc < 1:1217348/36‑1 (MQ=255)
tgttgCCACTGCACATGGTGAAAGACTTTACCTTcc < 1:3616720/36‑1 (MQ=255)
ttgCCACTGCACATGGTGAAATACTTTACCTTCCGc < 1:2948340/36‑1 (MQ=255)
ttgCCACTGCACATGGTGAAAGACTTTACCTTCCGc < 1:5822567/36‑1 (MQ=255)
ttgCCACTGCACATGGTGAAAGACTTTACCTTCCGc < 1:613934/36‑1 (MQ=255)
ttgCCACTGCACATGGTGAAAGACTTTACCTTCCGc < 1:6393218/36‑1 (MQ=255)
ttgCCACTGCACATGGTGAAAGACTTTACCTTCCGc > 1:643158/1‑36 (MQ=255)
ttcccACTGCACATGCTGAAAGACTTTACCTTCCGc < 1:466883/33‑1 (MQ=37)
tgCCCCTGCACATGGTGAAAGACTTTACCTACCGcc < 1:1862990/36‑1 (MQ=37)
tgCCACTGCACATGGTGAAAGACTTTACCTTCCGcc < 1:5152932/36‑1 (MQ=255)
tgCCACTGCACATGGTGAAAGACTTTACCTTCCGcc > 1:3247285/1‑36 (MQ=255)
tgCCACTGCACATGGTGAAAGACTTTACCTTCCGcc < 1:683360/36‑1 (MQ=255)
gCCACTGCACATGGTGAAAGACTTTACCTTCCGCCt < 1:3875349/36‑1 (MQ=255)
ccACTGCACATGGTGAAAGACTTTACCTTCCGCCTg < 1:6353115/36‑1 (MQ=255)
cACTGCACATGGTGAAAGACTTTACCTTCCGCCTGc > 1:1495026/1‑36 (MQ=255)
cACTGCACATGGTGAAAGACTTTACCTTCCGCCTGc < 1:3267601/36‑1 (MQ=255)
cACTGCACATGGTGAAAGACTTTACCTTCCGCCTGc > 1:943138/1‑36 (MQ=255)
cACTGCACATGGTGAAAGACTTTACCTTCCGCCTGc < 1:858171/36‑1 (MQ=255)
cACTGCACATGGTGAAAGACTTTACCTCCCGCCTGc > 1:498432/1‑36 (MQ=255)
aCTGCACATGTTGAAAGACTTTCCCTTCCGCCTGcc < 1:246186/36‑1 (MQ=37)
aCTGCACATGGTGAAAGACTTTACATTCCACCTgtc > 1:5200670/1‑34 (MQ=37)
aCTGCACATGGGGAAAGACTTTACCTTCCGCCTGcc > 1:144897/1‑36 (MQ=255)
cTGCACATGGTGAAAGACTTTACCTTCCGCCTGCCa > 1:5439736/1‑36 (MQ=255)
gCACATGGTGAAAGACTTTCCCTTCCGCCTGCCAGt < 1:2703076/36‑1 (MQ=255)
gCACATGGTGAAAGACTTTACCTTCCGCCTGCCAGt > 1:759491/1‑36 (MQ=255)
cacaTGGTGAAAGACTTTCCCTTCCGCCTGCCAGTa < 1:3761417/36‑1 (MQ=255)
cacaTGGTGAAAGACTTTACCTTCCGCCTGCCAGTa < 1:5095797/36‑1 (MQ=255)
cacaTGGTGAAAGACTTTACCTTCCCCCTGCCAGTa < 1:7159068/36‑1 (MQ=255)
acaTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAg > 1:5529827/1‑36 (MQ=255)
acaTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAg > 1:586808/1‑36 (MQ=255)
caTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAgg > 1:566075/1‑36 (MQ=255)
caTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAgg > 1:5593278/1‑36 (MQ=255)
caTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAgg < 1:6189764/36‑1 (MQ=255)
caTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAgg < 1:1342891/36‑1 (MQ=255)
caTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAgg > 1:874639/1‑36 (MQ=255)
aTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGc > 1:7418277/1‑36 (MQ=255)
aTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGc > 1:7103320/1‑36 (MQ=255)
aTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGc > 1:3240264/1‑36 (MQ=255)
aTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGc > 1:7507549/1‑36 (MQ=255)
aTGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGc < 1:6812789/36‑1 (MQ=255)
aTGGTGAAAAACTTTACCTCCCGCCTGCCAGTAGGc < 1:988981/36‑1 (MQ=37)
tGGTAAACGACTTTACCTTCCCCCTGCCAGTAGGCa < 1:7715350/36‑1 (MQ=25)
ggTGAAAGACTTTCCCTTCCGCCTGCCAGTAGGCaa < 1:3049919/36‑1 (MQ=255)
ggTGAAAGACTTTACCTTCCGCCTGCCAGTAGGCaa > 1:3491211/1‑36 (MQ=255)
gTGAAAGACTTTACCTTCCGCCTGCCAGTAGGCaat > 1:1615036/1‑36 (MQ=255)
gTGAAAGACTTTACCTCCCCCCTGCCAGTAGGCaat < 1:6621089/36‑1 (MQ=38)
atcaaaGACTTTCCCCCCCGCCTGCCAGTAGGCaat < 1:1820892/33‑1 (MQ=19)
tGAAAGACTTTACCTTCCGCCTGCCAGTAGGCaatg < 1:7549161/36‑1 (MQ=255)
tGAAAGACTTTACCTTCCGCCTGCCAGTAGGCaatg > 1:6995722/1‑36 (MQ=255)
gAAAGACTTTACCTTCCGCCTGCCAGTAGGCaatga > 1:3110235/1‑36 (MQ=255)
aaaGACTTTACCTTCCGCCTGCCAGTAGGCaatgaa < 1:3480436/36‑1 (MQ=255)
aaaGACTTTACCTTCCGCCTGCCAGTAGGCaatgaa > 1:3343278/1‑36 (MQ=255)
aaGACTTTACCTTCCGCCTGCCAGTAGGCaatgaat > 1:4611953/1‑36 (MQ=255)
aaGACTTAACCTTCCGCCTGCCAGTAGGCaatgaat < 1:7275044/36‑1 (MQ=255)
aGACTTTACCTTCCGCCTGCCAGTAGGCaatgaatg > 1:672598/1‑36 (MQ=255)
aGACTTTACCTTCCGCCTGCCAGTAGGCaatgaatg > 1:1755448/1‑36 (MQ=255)
gACTTTACCTTCCGCCTGCCAGTAGGCAatgaatga < 1:3940618/36‑1 (MQ=255)
gACTTTACCTTCCGCCTGCCAGTAGGCAatgaatga > 1:6399726/1‑36 (MQ=255)
gACTTTACCTTCCGCCTGCCAGTAGGCAatgaatga > 1:6157781/1‑36 (MQ=255)
aCTTTACCTTCCGCCTGCCAGTAGACAATGAATGAg > 1:5802279/1‑36 (MQ=255)
tttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGc > 1:1475208/1‑36 (MQ=255)
tttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGc > 1:2856638/1‑36 (MQ=255)
ttcccTCCCACCTGCCAGTAGGCAATGAATGAGGcc < 1:7215610/33‑1 (MQ=25)
ttACCTTCCGCCTGCCAGTAGGCGATGAATGAGGcc > 1:7783946/1‑36 (MQ=255)
ttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGcc < 1:7447079/36‑1 (MQ=255)
ttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGcc > 1:7707471/1‑36 (MQ=255)
ttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGcc < 1:922467/36‑1 (MQ=255)
ttACCTTCCGCCTGCCAGTAGGCAATGAATGAGGcc > 1:5270041/1‑36 (MQ=255)
tACCTTCCGCCTGCCAGTAGGCAATGAATGAGGCCa > 1:2593262/1‑36 (MQ=255)
tACCTTCCCCCTGCCAGTAGGCAATGAATGAGGCCa < 1:1321845/36‑1 (MQ=255)
ccTTCCGCCTGCCAGTAGGCAATGAATGAGGCCAGt > 1:3696650/1‑36 (MQ=255)
ccTCCCGCCTGCCAGTAGGCAATGAATGAGGCCAGt < 1:2234054/36‑1 (MQ=255)
cTTCCGCCTGCCAGTAGGCAATGAATGAGGCCAGtt < 1:1507455/36‑1 (MQ=255)
ttCCGCCTGCCAGTAGGCAATGAATGAGGCCAGttc < 1:169278/36‑1 (MQ=255)
tCCGCCTGCCAGTAGGCAATGAATGAGGCCAGttct < 1:5204940/36‑1 (MQ=255)
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TTTGTTGCCACTGCACATGGTGAAAGACTTTACCTTCCGCCTGCCAGTAGGCAATGAATGAGGCCAGTTCT > REL606/4590325‑4590395
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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