Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,478,544 | G→T | 24.3% | Q43K (CAA→AAA) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,478,544 | 0 | G→T | 24.3% | 5.6 ‑3.9 ‑0.0 | 46 | 127 | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
Reads supporting (aligned to +/- strand): new base (12/0): ref base (22/12): total (34/12) | ||||||||||
Fisher's exact test strand distribution p-value = 2.04e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.40e-01 |
TGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGG > REL606/3478512‑3478579
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tGGCGTTACCGCCACTTTCGTGGCGGTACGTTGTTg > 1:6785959/1‑36 (MQ=255)
aCCGCCACTTTCGTGGCGGTACGTTTATTCATtgcg > 1:7906104/1‑36 (MQ=25)
aCCGCCACTTTCGTGGCGGTACGTTGTTTCCTcgcg > 1:3630429/1‑36 (MQ=25)
ccGCCACTTTCGTGGCGGTACGTTGATGCATCGCGt < 1:2007048/36‑1 (MQ=255)
cGCCACTTTCGTGGCGGTACTGTGATTTATCGCCTc > 1:6198641/1‑36 (MQ=16)
cGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTc < 1:1867633/36‑1 (MQ=255)
cGCCACTTTCGTGGCGGTACCTTTATGCATCGCGTc > 1:4187145/1‑36 (MQ=37)
gCCACTTTCGTGGCGGTTCGGTTGTGCATTGCCTcc > 1:3232837/1‑35 (MQ=9)
gCCACTTTCGTGGCGGTACGTTTATGCATCGCGTcc > 1:2622404/1‑35 (MQ=255)
gCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCa < 1:797486/36‑1 (MQ=255)
ccACTTTCGTGGCGGGACGTTTATGTTTCGCGGCac > 1:4736337/1‑35 (MQ=12)
cACTTTCGTGGCGGTACGTTTATGGATTGCGTCAAg > 1:6106819/1‑36 (MQ=25)
aCTTTCGTGGCGGTACGTTTTTGCTTCGAGTCAGGc > 1:1070792/1‑36 (MQ=16)
aCTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGc < 1:4999374/36‑1 (MQ=255)
cTTTCGTGGCGGTACGTTTATTCATCGCGTCAAGCa > 1:7807465/1‑36 (MQ=37)
cTTTCGTGGCGGTACGTTTATGCATCGCGTCAAGCa > 1:2507183/1‑36 (MQ=255)
cTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCa < 1:2795255/36‑1 (MQ=255)
tttCGTGGCGGTACGTTTATTCATCTCGTCAAGCaa > 1:1285547/1‑36 (MQ=25)
tttCGTGGCGGTACGTTTATTCATCGCGTCAAGcca > 1:296983/1‑34 (MQ=25)
tttCGTGGCGGTACGTTGATGCATCGCGTCCAGcca > 1:5926933/1‑34 (MQ=37)
tttCGTGGCGGTACGTTGATGCATCGCGTCAAGCaa > 1:1043590/1‑36 (MQ=255)
ttCGTGGCGGTACGTTGATGCATCGCGTCAAGCaaa < 1:5131087/36‑1 (MQ=255)
cGTGGCGGTACGTTTATGCATCGCGTCAAGCAAACg > 1:4426644/1‑36 (MQ=255)
cGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACg < 1:2166658/36‑1 (MQ=255)
tGGCGGTACGTTGATGCATCGCGTCAAGCAAACGcc > 1:3937916/1‑36 (MQ=255)
tGGCGGTACGTTGATGCATCGCGTCAAGCAAACGcc < 1:7189643/36‑1 (MQ=255)
ggCGGTACGTTGATGCATCGCGTCAAGCAAACGCCg > 1:1952584/1‑36 (MQ=255)
ggCGGTACGTTGATGCATCCCGTCAAGCAAACGCCg > 1:788171/1‑36 (MQ=255)
gCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGt > 1:6767359/1‑36 (MQ=255)
gCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGt > 1:5645175/1‑36 (MQ=255)
cGGTACGTTGATGCATCGCGTCAAGCAAACGCCGtt > 1:958887/1‑36 (MQ=255)
cGGTACGTTGATGCATCGCGTCAAGCAAACGCCGtt < 1:6650668/36‑1 (MQ=255)
cGGTACGTTGATGCATCGCGTCAAGCAAACGCCGtt > 1:4169091/1‑36 (MQ=255)
ggTACGTTGATGCATCGCGTCAAGCAAACGCCGttt < 1:4328053/36‑1 (MQ=255)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg > 1:6576094/1‑36 (MQ=255)
gTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg > 1:4879062/1‑36 (MQ=255)
tACGTTGATGCATCGCGTCAAGCAAACGCCGTTTgg > 1:5748754/1‑36 (MQ=255)
tACGTTGATGCATCGCGTCAAGCAAACGCCGTTTgg < 1:8308848/36‑1 (MQ=255)
aCGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGt > 1:4804460/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCNNTTGGttt > 1:1359125/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt > 1:5122302/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt > 1:3619337/1‑36 (MQ=255)
gTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt > 1:8016454/1‑36 (MQ=255)
ttGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTc > 1:1474004/1‑36 (MQ=255)
ttGATGCATCGCGNCAAGCANACGCCGTTTGGTTTc > 1:1554638/1‑36 (MQ=40)
tGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCg < 1:7223360/36‑1 (MQ=255)
gATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCgg > 1:1955740/1‑36 (MQ=255)
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TGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGG > REL606/3478512‑3478579
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 13 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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