Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,370,027 | T→A | 59.4% | K117M (AAG→ATG) | rpsM ← | 30S ribosomal protein S13 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,370,027 | 0 | T→A | 59.4% | 72.0 ‑3.3 ‑1.7 | 59 | 350 | rpsM | 30S ribosomal protein S13 |
Reads supporting (aligned to +/- strand): new base (12/23): ref base (15/9): total (27/32) | ||||||||||
Fisher's exact test strand distribution p-value = 3.84e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.02e-02 |
TGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGCGGACCCTTACGGGTACGTGC > REL606/3369992‑3370061
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tGCCTTTGCCATTATTCAATCACCCCGATTATTTCt < 1:6943290/36‑1 (MQ=255)
ccTTTGCCATTATTCAATCACCCCGATTATTTCTTg > 1:6444648/1‑36 (MQ=255)
ttGCCATTATTCAATCACCCCGATTATTTCTTGATc < 1:6399127/36‑1 (MQ=255)
ttGCCATTATTCAATCACCCCGATTATTTCATGATc < 1:5835610/36‑1 (MQ=255)
ttGCCATTATTCAATCACCCCGATTATTTCATGATc > 1:7463842/1‑36 (MQ=255)
ttGACATTATTCAATCACCCCAATTATGTCTTGATc > 1:3700368/1‑36 (MQ=25)
tGCCATTATTCAATCACCCCGATTATTTCTTGATCg < 1:6833518/36‑1 (MQ=255)
tGCCATTATTCAATCACCCCGATTATTTCATGATCg < 1:6186491/36‑1 (MQ=255)
tGCCATTATTCAATCACCCCGATTATTTCATGATCg > 1:5110204/1‑36 (MQ=255)
tGCCATTATTCAATCACCCCGATTATTTCATGATCg < 1:3623832/36‑1 (MQ=255)
gCCATTATTCAATCACCCCGATTATTTCTTGATCga > 1:7666160/1‑35 (MQ=255)
gCCATTATTCAATCACCCCGATTATTTCATGATCgg > 1:3442310/1‑36 (MQ=255)
gCCATTATTCAATCACCCCGATTATTTCATGATCgg < 1:2357775/36‑1 (MQ=255)
gCCATTATTCAATCACCCCGATTATTTCATGATCgg < 1:7853014/36‑1 (MQ=255)
attattCAATCACCCCGATTATTTCTTGATCGGttt < 1:474646/36‑1 (MQ=255)
attattCAATCACCCCGATTATTTCTTGATCGGttt > 1:5314353/1‑36 (MQ=255)
attattCAATCACCCCGATTATTTCTTGATCGGttt > 1:5568911/1‑36 (MQ=255)
attattCAATCACCCCGATTATTTCTTGATCGGttt > 1:6859182/1‑36 (MQ=255)
attattCAATCACCCCGATTATTTCATGATCGGttt > 1:4400269/1‑36 (MQ=255)
ttattCAATCACCCCGATTATTTCATGATCGGTTTg < 1:2510371/36‑1 (MQ=255)
tattCAATCACCCCGATTATTTCATGATCGGTTTgc > 1:7065325/1‑36 (MQ=255)
tattCAATCACCCCGATTATTTCATGATCGGTTTgc < 1:840665/36‑1 (MQ=255)
attCAATCACCCCGATTATTTCTTGATCGGTTTgcg > 1:6070432/1‑36 (MQ=255)
attCAATCACCCCGATTATTTCATGATCGGTTTgcg > 1:7323290/1‑36 (MQ=255)
ttCAATCACCCCGATTATTTCATGATCGGTTTgcgc < 1:1297444/36‑1 (MQ=255)
ttCAATCACCCCGATTATTTCATGATCGGTTTgcgc < 1:1146150/36‑1 (MQ=255)
tCAATCACCCCGATTATTTCATGATCGGTTTGcgcg < 1:5388850/36‑1 (MQ=255)
cAATCACCCCGATTATTTCATGATCGGTTTGCGCgg > 1:5608888/1‑36 (MQ=255)
aaTCACCCCGATTATTTCTTGATCGGTTTGCGCGGa > 1:2539692/1‑36 (MQ=255)
aaTCACCCCGATTATTTCATGATCGGTTTGCGCGGa > 1:1209726/1‑36 (MQ=255)
aTCACCCCGATTATTTCATGATCGGTTTGCGCGGAc < 1:7665363/36‑1 (MQ=255)
tCACCCCGATTATTTCATGATCGGTTTGCGCGGAcc < 1:247466/36‑1 (MQ=255)
cACCCCGATTATTTCTTGATCGGTTTGCGCGGAccc > 1:2289122/1‑36 (MQ=255)
cACCCCGATTATTTCATGATCGGTTTGCGCGGAccc > 1:5614157/1‑36 (MQ=255)
aCCCCGATTATTTCTTGATCGGTTTGCGCGGACCCt > 1:4586323/1‑36 (MQ=255)
aCCCCGATTATTTCATGATCGGTTTGCGCGGACCCt > 1:7247048/1‑36 (MQ=255)
aCCCCGATTATTTCATGATCGGTTTGCGAGGACCCt > 1:3418367/1‑36 (MQ=38)
ccccGATTATTTCATGATCGGTTTGCGCGGACCCtt < 1:988219/36‑1 (MQ=255)
ccccGATTATTTCATGATCGGTTTGCGCGGACCCtt < 1:4738751/36‑1 (MQ=255)
cccGATTATTTCATGATCGGTTTGCGCGGACCCTTa < 1:1782724/36‑1 (MQ=255)
cccGATTATTTCATGATCGGTTTGCGCGGACCCTTa < 1:337605/36‑1 (MQ=255)
cccGATTATTTCATGATCGGTTTGCGCGGACCCTTa < 1:6504899/36‑1 (MQ=255)
ccGATTATTTCTTGATCGGTTTGCGCGGACCCTTAc > 1:2516016/1‑36 (MQ=255)
cGATTATTTCTTGATCGGTTTGCGCGGACCCTTACg > 1:1263215/1‑36 (MQ=255)
gATTATTTCATGATCGGTTTGCGCGGACCCTTACgg < 1:1500932/36‑1 (MQ=255)
ttattTCTTGATCGGTTTGCGCGGACCCTTACGGGt < 1:671199/36‑1 (MQ=255)
tattTCATGATCGGTTTGCGCGGACCCTTACGGGTa < 1:5689861/36‑1 (MQ=255)
tattTCATGATCGGTTTGCGCGGACCCTTACGGGTa > 1:408849/1‑36 (MQ=255)
attTCTTGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:1613029/36‑1 (MQ=255)
attTCTTGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:6154927/36‑1 (MQ=255)
attTCTTGATCGGTTTGCGCGAACCCTTACGGGTAc > 1:4669167/1‑36 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:4019990/36‑1 (MQ=255)
attTCATGATCGGTTTGCGCGGACCCTTACGGGTAc < 1:6316641/36‑1 (MQ=255)
tttCATGATCGGTTTGCGCGGACCCTTACGGGTACg < 1:7475126/36‑1 (MQ=255)
ttCATGATCGGTTTGCGCGGACCCTTACGGGTACGt < 1:3340917/36‑1 (MQ=255)
tCTTGATCGGTTTGCGCGGACCCTTACGGGTACGTg < 1:1110869/36‑1 (MQ=255)
tCTTGATCGGTTTGCGCGGACCCTTACGGGTACGTg < 1:7000553/36‑1 (MQ=255)
cTTGATCGGTTTGCGCGGACCCTTACGGGTACGTGc < 1:2563932/36‑1 (MQ=255)
cTTGATCGGTTTGCGCGGACCCTTACGGGTACGTGc > 1:3562137/1‑36 (MQ=255)
cTTGATCGGTTTGCGCGGACCATTGCGGGTACGTGc > 1:6274588/1‑36 (MQ=37)
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TGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGCGGACCCTTACGGGTACGTGC > REL606/3369992‑3370061
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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