Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 77 [1] [0] 63 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)57 (1.010) 36/64 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 0 (0.000)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT  >  REL606/3894961‑3895031
                                   |                                   
tcctgtttaACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:8040068‑M1/33‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:7204954‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:7700932‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:6457403‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:7147200‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:5744662‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:7964296‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:1631532‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:7528990‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:566189‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     >  1:1533219‑M1/1‑36 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:1452495‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:1361134‑M1/36‑1 (MQ=255)
tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:4346649‑M1/36‑1 (MQ=255)
tCGTGTGTAACTGTCCAACTTTTTGGGGTCAGTACA                                     <  1:5039475‑M1/36‑1 (MQ=255)
 cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg                                    <  1:7305990‑M1/36‑2 (MQ=255)
 cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAg                                    <  1:3023244‑M1/36‑2 (MQ=255)
  gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAgg                                   <  1:1624707‑M1/36‑3 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGTGGTCCGTACAGAc                                  <  1:26093/36‑1 (MQ=14)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  >  1:7136559‑M1/1‑33 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  >  1:4710063‑M1/1‑33 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  <  1:3538333‑M1/36‑4 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  <  1:4833706‑M1/36‑4 (MQ=255)
   tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt                                  >  1:7705569‑M1/1‑33 (MQ=255)
    gtTTAACTGTCCAACTTTTTGGGGTCAGTACAtgtt                                 >  1:3311491‑M1/1‑32 (MQ=255)
    gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt                                 >  1:4482414‑M1/1‑32 (MQ=255)
    gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt                                 <  1:2609794‑M1/36‑5 (MQ=255)
    gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggta                                 >  1:4167577‑M1/1‑32 (MQ=255)
    gtTTAACTGTCCAACGTTTTGGGGTCAGTACAggtt                                 <  1:4319256‑M1/36‑5 (MQ=255)
     tttAACTGTCCAACTTTTTGGGGTTAGTACAggttg                                >  1:8226643‑M1/1‑31 (MQ=255)
     tttAACTGTCCAACTTTTTGGGGTCAGTACAtgttg                                >  1:5908830‑M1/1‑31 (MQ=255)
     tttAACTGTCCAACTTTTTGGGGTCAGTACAgggag                                <  1:5584253‑M1/36‑6 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAtgttga                               <  1:5231184‑M1/36‑7 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAtgttga                               <  1:1624369‑M1/36‑7 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAggttgc                               >  1:2825879‑M1/1‑30 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAggttgc                               <  1:7670961‑M1/36‑7 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAggttgc                               >  1:5407903‑M1/1‑30 (MQ=255)
      ttAACTGTCCAACTTTTTGGGGTCAGTACAgggtgc                               <  1:7786761‑M1/36‑7 (MQ=255)
       tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc                              >  1:3778376‑M1/1‑29 (MQ=255)
       tAACTGTCCAACTTTTTGGGGTCAGTACAggttgcc                              <  1:2825816‑M1/36‑8 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc                             >  1:6553673‑M1/1‑28 (MQ=255)
        aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc                             <  1:6680120‑M1/36‑9 (MQ=255)
         aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca                            <  1:76155‑M1/36‑10 (MQ=255)
         aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca                            >  1:5874836‑M1/1‑27 (MQ=255)
          cTGTCCAACTTTTTGGGGTCAGTACAggttgcccag                           >  1:967041‑M1/1‑26 (MQ=255)
           tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg                          <  1:8477120‑M1/36‑12 (MQ=255)
           tGTCCAACTTTTTGGGGTCAGTACAggttgcccagg                          <  1:3430011‑M1/36‑12 (MQ=255)
            gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt                         <  1:7815033‑M1/36‑13 (MQ=255)
            gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt                         <  1:5094003‑M1/36‑13 (MQ=255)
            gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt                         <  1:4755067‑M1/36‑13 (MQ=255)
            gTCCAACTTTTTGGGGTCAGTACAggttgcccaggt                         <  1:2605940‑M1/36‑13 (MQ=255)
             tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg                        <  1:1222132‑M1/36‑14 (MQ=255)
             tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg                        >  1:3508877‑M1/1‑23 (MQ=255)
              ccAACTTTTTGGGGTCAGTACAggttgcccaggtga                       <  1:5912454‑M1/36‑15 (MQ=255)
               cAACTTTTTGGGGTCAGTACAggttgcccaggtgac                      >  1:5767882‑M1/1‑21 (MQ=255)
                 aCTTTTTGGGGTCAGTACAggttgcccaggtgacca                    >  1:1083409‑M1/1‑19 (MQ=255)
                  cTTTTTGTGGTCAGTACAggttgcccaggtgaccag                   <  1:2153779‑M1/36‑19 (MQ=255)
                  cTTTTTGGGGTCAGTACAggttgcccaggtgaccag                   <  1:3431494‑M1/36‑19 (MQ=255)
                  cTTTTTGGGGTCAGTACAggttgcccaggtgaccag                   >  1:3430241‑M1/1‑18 (MQ=255)
                   tttttGGGGTCAGTACAggttgcccaggtgaccagc                  <  1:5555194‑M1/36‑20 (MQ=255)
                   tttttGGGGTCAGTACAggttgcccaggtgaccagc                  <  1:5212371‑M1/36‑20 (MQ=255)
                   tttttGGGGTCAGTACAggttgcccaggtgaccagc                  <  1:4565127‑M1/36‑20 (MQ=255)
                    ttttGGGGTCAGTACAggttgcccaggtgaccagca                 <  1:2804682‑M1/36‑21 (MQ=255)
                    ttttGGGGTCAGTACAggttgcccaggtgaccagca                 >  1:2798417‑M1/1‑16 (MQ=255)
                    ttttGGGGTCAGTACAggttgcccaggtgaccagca                 <  1:7798038‑M1/36‑21 (MQ=255)
                     tttGGGGTCAGTACAggttgcccaggtgaccagcac                <  1:1104239‑M1/36‑22 (MQ=255)
                       tGGGGTCAGTACAggttgcccaggtgaccagcacgc              <  1:5712223‑M1/36‑24 (MQ=255)
                        ggggTCAGTACAggttgcccaggtgaccagcacgcc             <  1:741927‑M1/36‑25 (MQ=255)
                         gggTCAGTACAggttgcccaggtgaccagcacgccg            <  1:7969831‑M1/36‑26 (MQ=255)
                          ggTCAGTACAggttgcccaggtgaccagctcgccgc           <  1:4317586‑M1/36‑27 (MQ=255)
                           gTCAGTACAggttgcccaggtgaccagcacgccgcc          <  1:3281441‑M1/36‑28 (MQ=255)
                             cAGTACAggttgcccaggtgaccagcacgccgccaa        >  1:7714081‑M1/1‑7 (MQ=255)
                              aGTACAggttgcccaggtgaccagcacgccgccaag       >  1:2868249‑M1/1‑6 (MQ=255)
                                 aCAggttgcccaggtgaccagcacgccgccaagaac    <  1:7358151‑M1/36‑34 (MQ=255)
                                 aCAggttgcccaggtgaccagcacgccgccaagaac    <  1:1787008‑M1/36‑34 (MQ=255)
                                   aggttgcccaggtgaccagcacgccgccaagaacgg  >  1:5404303‑M1/1‑1 (MQ=255)
                                   aggttgcccaggtgaccagcacgccgccaagaacgg  <  1:3777699‑M1/36‑36 (MQ=255)
                                   |                                   
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTGTT  >  REL606/3894961‑3895031

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG