New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 353057740 (0.740)11 (0.200) 5/62 NT 24.2% intergenic (‑234/+37) livJ/rpoH leucine/isoleucine/valine transporter subunit/RNA polymerase sigma factor
?REL606 4043869 = 29 (0.480)coding (155/1404 nt) yihO predited transporter

CGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCTGGCATCCCTAATTCATCGGTATA  >  REL606/4043834‑4043903
                                   |                                  
cgGTAAAAAACTTCGCCACCAGAAAGATAATCCCGc                                    <  1:4422422/36‑1 (MQ=255)
 ggTAAAAAACTTCGCCACCAGAAAGATAATCCCGcc                                   >  1:6397316/1‑36 (MQ=255)
 ggTAAAAAACTTCGCCACCAGAAAGATAATCCCGcc                                   <  1:5183624/36‑1 (MQ=255)
 ggTAAAAAACTTCGCCACCAGAAAGATAATCCCGcc                                   >  1:2078371/1‑36 (MQ=255)
 ggTAAAAAACTTCGCCACCAGAAAGATAATCCCGcc                                   >  1:7112503/1‑36 (MQ=255)
  gTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCa                                  >  1:5989674/1‑36 (MQ=255)
   tAAAAAACTTCGCCACCAGAAAGATAATCCCGCCAt                                 >  1:1392192/1‑36 (MQ=255)
    aaaaaaCTTCGCCACCAGAAAGATAATCCCGCCATa                                >  1:4334750/1‑36 (MQ=255)
     aaaaaCTTCGCCACCAGAAAGATAATCCCGCCATAg                               >  1:7406250/1‑36 (MQ=255)
     aaaaaCTTCGCCACAAGAAAGATAATCCCGGCATAg                               >  1:6714761/1‑36 (MQ=37)
      aaaaCTTCGCCACCAGAAAGATAATCCCGCCATAGt                              >  1:7784870/1‑36 (MQ=255)
      aaaaCTTCGCCACAAGAAAGATAATCCCGCCATAGt                              <  1:6133836/36‑1 (MQ=255)
        aaCTTCGCCACCAGAAAGATAATCCCGCCATAGTaa                            >  1:7172669/1‑36 (MQ=255)
        aaCTTCGCCACCAGAAAGATAATCCCGCCATAGTaa                            >  1:4234774/1‑36 (MQ=255)
         aCTTCGCCACCAGAAAGATAATCCCGCCATAGTAAg                           >  1:7113277/1‑36 (MQ=255)
         aCTTCGCCACCAGAAAGATAATCCCGCCATAGTAAg                           >  1:6704584/1‑36 (MQ=255)
         aCTTCGCCACCAGAAAGATAATCCCGCCATAGTAAg                           >  1:3092631/1‑36 (MQ=255)
          cTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGc                          >  1:5054933/1‑36 (MQ=255)
          cTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGc                          >  1:6833234/1‑36 (MQ=255)
          cTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGc                          >  1:6995405/1‑36 (MQ=255)
             cGCCACAAAAAAGATAATCCCGCCATAGTAAGCTgg                       <  1:5863232/36‑1 (MQ=25)
              cccaccaAAAAGAAAACCCCGCCATAGTAAGCTGGc                      <  1:7219475/35‑1 (MQ=21)
              cccacaaGAAAAATAACCCCGCCATAGTAAGCTGGc                      <  1:5094426/35‑1 (MQ=21)
                 accaAAAAAAAAACCCCGCCATAGTAAGCTGGCATc                   <  1:3034809/36‑1 (MQ=19)
                 aaaaGAAAGATAATCCCGCCATAGTAAGCTGGCATc                   <  1:7889966/33‑1 (MQ=255)
                  caaGAAAGATAATCCCGCCATAGTAAGCTGGCATcc                  <  1:393750/34‑1 (MQ=255)
                  aaaaaaaaaaaaccccgCCATAGTAAGCTGGCATcc                  <  1:3197822‑M2/19‑1 (MQ=255)
                   caGAAAGATAATCCCGCCATAGTAAGCTGGCATccc                 <  1:4938145/36‑1 (MQ=255)
                   aaaaaaaaaaaccccgCCATAGTAAGCTGGCATccc                 <  1:3327086‑M2/20‑1 (MQ=255)
                   aaGAAAGATAACCCCGCCATAGTAAGCTGGCATccc                 <  1:240103/35‑1 (MQ=255)
                    aGAAAGATAATCCCGCCATAGTAAGCTGGCATCCCt                >  1:5480412/1‑36 (MQ=255)
                    aGAAAGATAATCCCGCCATAGCAAGCTGGCATCCCt                >  1:5319798/1‑36 (MQ=255)
                     aaaaaaaaaccccgCCATAGTAAGCTGGCATCCCTa               <  1:261386‑M2/22‑1 (MQ=255)
                      aaaGATAATCCCGCCATAGTAAGCTGGCATCCCTaa              >  1:2692943/1‑36 (MQ=255)
                       aagaaaaccccgCCATAGTAAGCTGGCATCCCTAAt             <  1:5406954‑M2/24‑1 (MQ=255)
                       aaaaaaaccccgCCATAGTAAGCTGGCATCCCTAAt             <  1:4004751‑M2/24‑1 (MQ=255)
                        agaaaaccccgCCATAGTAAGCTGGCATCCCTAAtt            <  1:21589‑M2/25‑1 (MQ=255)
                        aaaaaaccccgCCATAGTAAGCTGGCATCCCTAAtt            <  1:7506033‑M2/25‑1 (MQ=255)
                        aGATAATCCCGCCATAGTAAGCTGGCATCCCTAAtt            >  1:5312014/1‑36 (MQ=255)
                         gATAATCCCGCCATAGTAAGCTGGCATCGCTAATTc           >  1:1061381/1‑36 (MQ=255)
                         aataaccccgCCATAGTAAGCTGGCATCCCTAATTc           <  1:7573847‑M2/26‑1 (MQ=255)
                          aTAATCCCGCCATAGTAAGCTGGCATCCCTAATTCa          >  1:297876/1‑36 (MQ=255)
                             accccgCCATAGTAAGCTGGCATCCCTAATTCATCg       <  1:3960744‑M2/30‑1 (MQ=255)
                             aTCCCGCCATAGTAAGCTGGCATCCCTAATTCATct       >  1:6136005/1‑35 (MQ=255)
                             aTCCCGCCATAGTAAGCTGGCATCCCTAATTCATCg       >  1:4162407/1‑36 (MQ=255)
                              ccccgCCATAGTAAGCTGGCATCCCTAATTCATCgg      <  1:1815221‑M2/31‑1 (MQ=255)
                              ccccgCCATAGTAAGCTGGCATCCCTAATTCATCgg      <  1:1093881‑M2/31‑1 (MQ=255)
                               cccgCCATAGTAAGCTGGCATCCCTAATTCATCGGt     <  1:6372836‑M2/32‑1 (MQ=255)
                                ccgCCATAGTAAGCTGGCCTCCCTAATTCATCGGta    <  1:5356980‑M2/33‑1 (MQ=255)
                                ccgCCATAGTAAGCTGGCATCCCTAATTCATCGGta    <  1:2022555‑M2/33‑1 (MQ=255)
                                  gCCATAGTAAGCTGGCATCCCTAATTCATCGGtata  <  1:262230‑M2/35‑1 (MQ=255)
                                  gCCATAGTAAGCTGGCATCCCTAATTCATCGGtata  <  1:7062476‑M2/35‑1 (MQ=255)
                                  gCCATAGTAAGCTGGCATCCCTAATTCATCGGtata  <  1:4865225‑M2/35‑1 (MQ=255)
                                  gCCATAGTAAGCTGGCATCCCTAATTCATCGGtata  <  1:1715871‑M2/35‑1 (MQ=255)
                                   |                                  
CGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCTGGCATCCCTAATTCATCGGTATA  >  REL606/4043834‑4043903

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG