Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,148,162 | T→A | 12.0% | N164K (AAT→AAA) | molR → | molybdate metabolism regulator |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,148,162 | 0 | T→A | 12.0% | 3.1 ‑4.4 0.0 | 33 | 492 | molR | molybdate metabolism regulator |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (21/8): total (21/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.21e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTT > REL606/2148127‑2148197
|
cGTCGCTTAGCCTGTAGTGTGTCGCAACGGGataat < 1:6397140/36‑1 (MQ=255)
cGTCGCTTAGCCTGTAGTGTGTCGCAACGGGataat < 1:4662666/36‑1 (MQ=255)
cGTCGCTTAGCCTGTAGTGTGTCGCAACGGGataat > 1:7629091/1‑36 (MQ=255)
gTCGCTTAGCCTGTAGTGTGTCGCAACGGGataata > 1:924912/1‑36 (MQ=255)
gTCGCTTAGCCTGTAGTGTGTCGCAACGGGataata < 1:1624070/36‑1 (MQ=255)
gTCGCTTAGCCTGTAGTGTGTCGCAACGGGataata < 1:1809113/36‑1 (MQ=255)
tCGCTTAGCCTGTAGTGTGTCGCAACGGGAtaataa > 1:7445243/1‑36 (MQ=255)
cGCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaa < 1:3824143/36‑1 (MQ=255)
cGCTTAGCCTGTAATGTGTCGCAACGGTATAATaaa < 1:7389095/36‑1 (MQ=37)
gCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaaa > 1:5995667/1‑36 (MQ=255)
gCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaaa > 1:6155778/1‑36 (MQ=255)
gCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaaa > 1:6976143/1‑36 (MQ=255)
gCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaaa > 1:2469213/1‑36 (MQ=255)
gCTTAGCCTGTAGTGTGTCGCAACGGGATAATaaaa < 1:880011/36‑1 (MQ=255)
cTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAAc < 1:5195265/36‑1 (MQ=255)
ttAGCCTGTAGTGTGTCGCAACGGGATAATAAAACa > 1:1287042/1‑36 (MQ=255)
tAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAg < 1:2594166/36‑1 (MQ=255)
aGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGc > 1:1837359/1‑36 (MQ=255)
aGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGc < 1:6920044/36‑1 (MQ=255)
gCCTGTAGTGTGTCGCAACGGGATAATAAAACAGcc < 1:601731/36‑1 (MQ=255)
tGTAGTGTGTCGCAACGGGATAATAAAACAGCcaca > 1:6427436/1‑36 (MQ=255)
gTAGTGTGTCGCAACGGGATAATAAAACAGCCACAt < 1:2529623/36‑1 (MQ=255)
tAGTGTGTCGCAACGGGATAATAAAACAGCCACAtt > 1:7218454/1‑36 (MQ=255)
tAGTGTGTCGCAACGGGATAATAAAACAGCCACAtt > 1:7714934/1‑36 (MQ=255)
aGTGTGTCGCAACGGGATAATAAAACAGCCACAttt > 1:2092660/1‑36 (MQ=255)
tgtgtCGCGCCGGGATACAAACCCAGCCACATTTGa < 1:3767260/36‑1 (MQ=12)
tgtgtCGCAACGGGATAATAAAACAGCCACATTTGa > 1:4720598/1‑36 (MQ=255)
tgtgtCGAAAAGGAAAAAAAAACCAGCCACATTTGa < 1:1638454/36‑1 (MQ=9)
tgtgaCGAAACGGGAAAAAAAACCAGCCACATTTGa < 1:1218206/36‑1 (MQ=12)
tgtCGCAACGGGATAATAAAACAGCCACATTTGACt > 1:718887/1‑36 (MQ=255)
tgtCGCAACGGGATAATAAAACAGCCACATTTGACt > 1:4344368/1‑36 (MQ=255)
gtCGCAACGGGATAATAAAACAGCCACATTTGACtt > 1:3749203/1‑36 (MQ=255)
cGCAACGGGATAATAAAACAGCCACATTTGACTTCa > 1:5669777/1‑36 (MQ=255)
gaaaCGGGAAAAAAAACCAGCCACATTTGACTTCAg < 1:8470451/34‑1 (MQ=18)
aaCGGGATAATAAAACAGCCACATTTGACTTCAgcg > 1:6825066/1‑36 (MQ=255)
cGGGATAATAAAACAGCCACATTTGACTTCAGCGcc > 1:4556918/1‑36 (MQ=255)
gggATAATAAAACAGCCACATTTGACTTCAGCGCCt > 1:7926103/1‑36 (MQ=255)
gggATAATAAAACAGCCACATTTGACTTCAGCGCCt > 1:524210/1‑36 (MQ=255)
ggATAATAAAACAGCCACATTTGACTTCAGCGCCTg > 1:1260803/1‑36 (MQ=255)
ggATAATAAAACAGCCACATTTGACTTCAGCGCCTg > 1:32927/1‑36 (MQ=255)
ataataAAACAGCCACATTTGACTTCAGCGCCTGtt > 1:7073185/1‑36 (MQ=255)
gaataaAACAGCCACAGTTGACTTCAGCGCCTGTTc > 1:5987549/2‑36 (MQ=255)
aataaAACAGCCACATTTGACTTCAGCGCCTGTTCt > 1:7405760/1‑36 (MQ=255)
aataaAACAGCCACATTTGACTTCAGCGCCTGTTCt > 1:5868618/1‑36 (MQ=255)
aataaAACAGCAACATTTGACTTCAGCGCCTGTTCt > 1:5620085/1‑36 (MQ=255)
ataaAACAGCCACATTTGACTTCAGCGCCTGTTCtt > 1:5865110/1‑36 (MQ=255)
taaAACAGCCACATTTGACTTCAGCGCCTGTTCttt > 1:4382255/1‑36 (MQ=255)
taaAACAGCCACATTTGACTTCAGCGCCTGTTCttt > 1:1644502/1‑36 (MQ=255)
taaAACAGCCACATTTGACTTCAGCGCCTGTTCttt > 1:7811973/1‑36 (MQ=255)
|
CGTCGCTTAGCCTGTAGTGTGTCGCAACGGGATAATAAAACAGCCACATTTGACTTCAGCGCCTGTTCTTT > REL606/2148127‑2148197
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
|