Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,454,742 | +G | 5.3% | coding (841/927 nt) | yfeR ← | predicted DNA‑binding transcriptional regulator |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,454,742 | 1 | .→G | 5.3% | 3.7 ‑2.2 ‑0.2 | 38 | coding (841/927 nt) | yfeR | predicted DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (11/25): total (13/25) | ||||||||||
Fisher's exact test strand distribution p-value = 1.11e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.02e-01 |
CTGGTCTCGTACCACGTCCCATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCA > REL606/2454707‑2454777
|
cTGGTCTCGTACCTCGTCCCATAACGCTTCAgcggc < 1:5235941/36‑1 (MQ=255)
cTGGTCTCGTACCACGTCCCATAACGCTTCAgcggc < 1:6967664/36‑1 (MQ=255)
cTGGTCTCGTACCACGTCCCATAACGCTTCAgcggc < 1:4986504/36‑1 (MQ=255)
ggTCTCGTACCACGTCCCATAACGCTTCAGcggc.gg > 1:2336986/1‑36 (MQ=255)
gTCTCGTACCACGTCCCATAACGCTTCAGcggc.ggc > 1:5467560/1‑35 (MQ=255)
gTCTCGTACCACGTCCCATAACGCTTCAGCGGC.GGt < 1:898336/36‑1 (MQ=255)
gTCTCGTACCACGTCCCATAACGCTTCAGCGGC.GGt < 1:7737486/36‑1 (MQ=255)
ctcGTACCACGTCCCATAACGCTTCAGCGGC.GGTgg < 1:6177638/36‑1 (MQ=255)
tcGTACCACGTCCCATAGCGCTTCAGCGGC.GGTggc < 1:323310/36‑2 (MQ=39)
tcGTACCACGTCCCATAACGCTTCAGCGGC.GGTGGa < 1:4174034/36‑1 (MQ=255)
tcGTACCACGTCCCATAACGCTTCAGCGGC.GGTGGa < 1:6345545/36‑1 (MQ=255)
tcGTACCACGTCCCATAACGCTTCAGCGGC.GGGggg > 1:6263372/1‑35 (MQ=255)
gTACCACGTCCCATAACGCTTCAGCGGC.GGTGGaaa < 1:3377898/36‑1 (MQ=255)
gTACCACGTCCCATAACGCTTCAGCGGC.GGGGGgaa > 1:7037617/1‑36 (MQ=37)
tACCACGTCCCATAACGCTTCAGCGGC.GGTGGGAAg > 1:7387036/1‑36 (MQ=255)
tACCACGTCCCATAACGCTTCAGCGGC.GGTGGAAAg < 1:7477612/36‑1 (MQ=255)
aCCACGTCCCATAACGCTTCAGCGGC.GGTGGgaaag > 1:3088092/1‑34 (MQ=38)
aCCACGTCCCATAACACTTCAGCGGC.GGGGGGAAgg > 1:6125073/1‑35 (MQ=25)
ccACGTCCCATAACGCTTCAGCGGC.GGTGGGAAggg > 1:1500118/1‑34 (MQ=38)
cACGTCCCATAACGCTTCAGCGGC.GGGGGGAAGTgg > 1:3852294/1‑35 (MQ=37)
aCGTCCCATAACGCTTCAGCGGC.GGTGGAAAGTGaa < 1:2509913/36‑1 (MQ=255)
aCGTCCCATAACGCTTCAGCGGC.GGTGGAAAGTGaa < 1:576241/36‑1 (MQ=255)
gTCCCATAACGCTTCAGCGGC.GGGGGGAAATGaaag > 1:5896601/1‑34 (MQ=21)
cccATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGt < 1:3628667/36‑1 (MQ=255)
cccATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGt < 1:1835897/36‑1 (MQ=255)
ccATAACGCTTGAGCGGC.GGTGGAAAGTGAACGGtt < 1:7421022/36‑1 (MQ=255)
ccATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGtt < 1:7799941/36‑1 (MQ=255)
ccATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGtt < 1:582740/36‑1 (MQ=255)
cATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGttc < 1:6151636/36‑1 (MQ=255)
aTAACGCTTCAGCGGC.GGTGGGAAGGGAAAGGtttt > 1:2142059/1‑34 (MQ=21)
tAACGCTTCAGCGGC.GGTGGAAAGTGAACGGttctt < 1:3012683/36‑1 (MQ=255)
tAACGCTTCAGCGGC.GGTGGAAAGTGAACGGttctt < 1:7271007/36‑1 (MQ=255)
aaCGCTTCAGCGGC.GGGGGGAAGTGAACGGgttttc > 1:5873597/1‑36 (MQ=19)
aCGCTTCAGCGGC.GGTGGGAAGAGAAAGGttttttc > 1:6363755/1‑34 (MQ=16)
cGCTTCAGCGGCGGGGGGAAAGGGACGGGttcttct > 1:4105876/1‑35 (MQ=9)
cGCTTCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCt < 1:1899618/36‑1 (MQ=255)
gCTTCAGCGGCGGGGGGAGAGGGAAGGGTTTTTccg > 1:3116103/1‑35 (MQ=2)
gCTTCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCTg < 1:3365655/36‑1 (MQ=255)
ctgcAGCGGC.GGTGGAATGTGAACGGTTCTTCCTgc < 1:3985035/33‑1 (MQ=37)
ttCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCTgcg < 1:3144461/36‑1 (MQ=255)
ttCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCTgcg < 1:7309916/36‑1 (MQ=255)
cAGCGGA.GGTGGAACGTGAACGGTTCTTCCTGCGCa < 1:2813121/36‑1 (MQ=37)
aGCGGC.GGTGGAAAGTGAACGGTTCTTCCTGCGCAc < 1:2865195/36‑1 (MQ=255)
gcggc.gGTGGGAAGTGAAAGGGTTTTCCTGCGCGcc > 1:7744588/1‑36 (MQ=16)
ggc.ggTGGAAAGTGAACGGTTCTTCCTGCGCACCAg > 1:4661234/1‑36 (MQ=255)
gc.ggTGGAAAGTGAACGGTTCTTCCTGCGCACCAGc < 1:2479701/36‑1 (MQ=255)
gc.ggTGGAAAGTGAACGGTTCTTCCTGCGCACCAGc > 1:1537336/1‑36 (MQ=255)
gc.ggTGGAAAGTGAACGGTTCTTCCTGCGCACCAGc > 1:5976149/1‑36 (MQ=255)
c.ggTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCa > 1:1561282/1‑36 (MQ=255)
|
CTGGTCTCGTACCACGTCCCATAACGCTTCAGCGGC.GGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCA > REL606/2454707‑2454777
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|