Predicted mutation
evidence seq id position mutation freq annotation gene description
JC REL606 3,289,962 Δ16 bp 100% coding (96‑111/4554 nt) gltB → glutamate synthase, large subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 32899613 (0.050)57 (0.920) 41/70 NT 91.9% coding (95/4554 nt) gltB glutamate synthase, large subunit
?REL606 3289978 = 7 (0.110)coding (112/4554 nt) gltB glutamate synthase, large subunit

TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289943‑3290012
                                   |                                  
gggttcccgcagagcctgggggaggttcacgatatc                                    >  1:2535021‑M2/36‑36 (MQ=255)
 ggttcccgcagagccttggggaggttcacgatatCt                                   >  1:1784363‑M2/35‑36 (MQ=255)
  gttcccgcagagcctgggggaggttcacgatatCtt                                  >  1:4769754‑M2/34‑36 (MQ=255)
  gttcccgcagagcctgggggaggttcacgatatCtt                                  >  1:1935873‑M2/34‑36 (MQ=255)
   ttcccgcagagcctgggggaggttcacgatatCTTg                                 >  1:2748387‑M2/33‑36 (MQ=255)
   ttcccgcagagcctgggggaggttcacgatatCTTg                                 <  1:239180‑M2/4‑1 (MQ=255)
     cccgcagagcctgggggaggttcacgatatCTTgag                               <  1:6030321‑M2/6‑1 (MQ=255)
     cccgcagagcctgggggaggttcacgatatCTTgag                               >  1:1939056‑M2/31‑36 (MQ=255)
     cccgcagagcctgggggaggttcacgatatCTTgag                               <  1:7470444‑M2/6‑1 (MQ=255)
     cccgcagagcctgggggaggttcacgatatCTTgag                               >  1:721690‑M2/31‑36 (MQ=255)
       cgcagagcctgggggaggttcacgatatCTTGagag                             <  1:2252758‑M2/8‑1 (MQ=255)
        gcagagcctgggggaggttcacgatatCTTGAGAgg                            <  1:3398774‑M2/9‑1 (MQ=255)
        gcagagcctgggggaggttcacgatatCTTGAGAgg                            >  1:3754236‑M2/28‑36 (MQ=255)
         ttCACGATATGTTGTACGATAAATCCCTTGAGAggg                           >  1:5162283/1‑36 (MQ=255)
         cagagcctgggggaggttcacgatatCTTGAGAggg                           >  1:5238448‑M2/27‑36 (MQ=255)
         cagagcctgggggaggttcacgatatCTTGAGAggg                           <  1:821992‑M2/10‑1 (MQ=255)
          agagcctgggggaggttcacgatatCTTGAGAGGGa                          >  1:6940953‑M2/26‑36 (MQ=255)
          agagcctgggggaggttcacgatatCTTGAGAGGGa                          >  1:1494100‑M2/26‑36 (MQ=255)
           gagcctgggggaggttcacgatatCTTGAGAGGGAt                         <  1:2703217‑M2/12‑1 (MQ=255)
              cctgggggaggttcacgatatCTTGAGAGGGATAAc                      <  1:5724242‑M2/15‑1 (MQ=255)
              cctgggggaggttcacgatatCTTGAGAGGGATAAc                      <  1:6854547‑M2/15‑1 (MQ=255)
              cctgggggaggttcacgatatCTTGAGAGGGATAAc                      >  1:6878744‑M2/22‑36 (MQ=255)
              cctgggggaggttcacgatatCTTGAGAGGGATAAc                      <  1:1691600‑M2/15‑1 (MQ=255)
               ctgggggaggttcacgatatCTTGAGAGGGATAACt                     <  1:7170948‑M2/16‑1 (MQ=255)
               atatGTTGTACGATAAATCCCTTGAGAGGGATAACt                     <  1:2871307/36‑1 (MQ=255)
                tgggggaggttcacgatatCTTGAGAGGGATAACtg                    >  1:465866‑M2/20‑36 (MQ=255)
                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                   >  1:2110004‑M2/19‑36 (MQ=255)
                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                   <  1:4425170‑M2/18‑1 (MQ=255)
                 gggggaggttcaagatatCTTGAGAGGGATAACtgt                   <  1:7492848‑M2/18‑1 (MQ=255)
                  ggggaggttcacgatatCTTGAGAGGGATAACtgtg                  >  1:4479537‑M2/18‑36 (MQ=255)
                   gggaggttcacgatatCTTGAGAGGGATAACTGTgg                 >  1:5476304‑M2/17‑36 (MQ=255)
                   gggaggttcacgatatCTTGAGAGGGATAACTGTgg                 >  1:3397284‑M2/17‑36 (MQ=255)
                    ggaggttcacgatatCTTGAGAGGGATAACTGTGGt                <  1:4073875‑M2/21‑1 (MQ=255)
                    ggaggttcacgatatCTTGAGAGGGATAACTGTGGt                >  1:4092632‑M2/16‑36 (MQ=255)
                     tgtACGATAAATCCCTTGAGAGGGATAACTGTGGtt               >  1:1044508/1‑36 (MQ=255)
                     gaggttcacgatatCTTGAGAGGGATAACTGTGGtt               <  1:2437678‑M2/22‑1 (MQ=255)
                       ggttcacgatatCTTGAGAGGGATAACTGTGGTTTc             >  1:7591963‑M2/13‑36 (MQ=255)
                       ggttcacgatatCTTGAGAGGGATAACTGTGGTTTc             <  1:6755974‑M2/24‑1 (MQ=255)
                       ggttcacgatatCTTGAGAGGGATAACTGTGGTTTc             <  1:3366475‑M2/24‑1 (MQ=255)
                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg            >  1:8011210‑M2/12‑36 (MQ=255)
                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg            >  1:7434715‑M2/12‑36 (MQ=255)
                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg            <  1:7061531‑M2/25‑1 (MQ=255)
                         ttcacgatatCTTGAGAGGGATAACTGTGGTTTCgg           <  1:6284943‑M2/26‑1 (MQ=255)
                         ttcacgatatCTTGAGAGGGATAACTGTGGTTTCgg           <  1:5844015‑M2/26‑1 (MQ=255)
                          tcacgatatCTTGAGAGGGATAACTGTGGTTTCGGc          >  1:5505034‑M2/10‑36 (MQ=255)
                          tcacgatatCTTGAGAGGGATAACTGTGGTTTCGGc          >  1:238133‑M2/10‑36 (MQ=255)
                          gATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGc          >  1:2793359/1‑36 (MQ=255)
                           cacgatatCTTGAGAGGGATAACTGTGGTTTCGGcc         <  1:2135234‑M2/28‑1 (MQ=255)
                           cacgatatCTTGAGAGGGATAACTGTGGTTTCGGcc         >  1:478695‑M2/9‑36 (MQ=255)
                            acgatatCTTGAGAGGGATANCTGTGGTTTCGGCCt        >  1:2025370‑M2/8‑36 (MQ=255)
                             cgatatCTTGAGAGGGATAACTATGGTTTCGGCCTg       >  1:6099526‑M2/7‑36 (MQ=255)
                              gatatCTTGAGAGGGATAACTGTGGTTTCGGCCTGa      <  1:4172767‑M2/31‑1 (MQ=255)
                              gatatCTTGAGAGGGATAACTGTGGTTTCGGCCTGa      <  1:4189255‑M2/31‑1 (MQ=255)
                               atatCTTGAGAGGGATAACTGTGGTTTCGGCCTGAt     >  1:862925‑M2/5‑36 (MQ=255)
                               aTCTCTTGAGAGGTATCACTGTGGTTTCTGCCTGAt     <  1:1086546/36‑1 (MQ=16)
                               aTCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGAt     >  1:6044298/1‑36 (MQ=255)
                                tatCTTGAGAGGGATAACTGTGGTTTCGGCCTGATc    <  1:2969510‑M2/33‑1 (MQ=255)
                                tatCTTGAGAGGGATAACTGTGGTTTCGGCCTGATc    <  1:7927168‑M2/33‑1 (MQ=255)
                                taacTTGAGAGGGATAACTGTGGTTTCGGCCTGATc    <  1:5215434/33‑1 (MQ=255)
                                tCCCGTGAGAGGGATAACTGTGGTTTCGGCCTGATc    <  1:3240838/36‑1 (MQ=255)
                                 atCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCg   >  1:3213557‑M2/3‑36 (MQ=255)
                                 atCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCg   <  1:8127944‑M2/34‑1 (MQ=255)
                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGc  >  1:6092144‑M2/2‑36 (MQ=255)
                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGc  >  1:3005160‑M2/2‑36 (MQ=255)
                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGc  >  1:3863835‑M2/2‑36 (MQ=255)
                                   |                                  
TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289943‑3290012

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG