New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2353390 =27 (0.450)5 (0.080) 4/70 NT 17.0% coding (1554/1833 nt) yfbS predicted transporter
?REL606 3424865 = 22 (0.370)intergenic (+83/‑43) nirD/nirC nitrite reductase small subunit/nitrite transporter

AATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAG  >  REL606/3424832‑3424898
                                 |                                 
atgctggggtgtttgtttgtcttgtcggcggttttt                                 >  1:6978566‑M2/34‑36 (MQ=255)
aatCTTCGGTATATTGCAGGACATTTTTTAAACttt                                 >  1:434057/1‑36 (MQ=255)
  tCTTCGGTATATTGCAGGACATTTTTTAAACttttt                               <  1:1209437/36‑1 (MQ=255)
  gctggggtgtttgtttgtcttgtcggcggttttttg                               >  1:6301956‑M2/32‑35 (MQ=255)
   cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                              <  1:871937/36‑1 (MQ=255)
   cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                              <  1:2507331/36‑1 (MQ=255)
   cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                              <  1:1475486/36‑1 (MQ=255)
    ttCGGTATATTGCAGGACATTTTTTAAACTTTTTGt                             <  1:5959400/36‑1 (MQ=255)
    tggggtgtttgtttgtcttgtcggcggttTTTTTGt                             >  1:703785‑M2/30‑36 (MQ=255)
      cGGTATATTGCAGGACATTTTTTAAACTTTTTGttt                           <  1:2138963/36‑1 (MQ=255)
       ggtgtttgtttgtcttgtcggcggttTTTTTTtttt                          >  1:5798896‑M2/27‑36 (MQ=255)
       ggTATATTGCAGGACATTTTTTAAACTTTTTGtttt                          <  1:7486008/36‑1 (MQ=255)
        gTATATTGCAGGACATTTTTTAAACTTTTTGTTTTa                         >  1:3018951/1‑36 (MQ=255)
        gTATATTGCAGGACATTTTTTAAACTTTTTGTTTTa                         >  1:3565764/1‑36 (MQ=255)
        gTATATTGCAGGACATTTTTTAAACTTTTTGTTTTa                         <  1:4662580/36‑1 (MQ=255)
            atTGCAGGACATTTTTTAAACTTTTTGTTTTAtttt                     <  1:2056020/36‑1 (MQ=255)
            atTGCAGGACATTTTTTAAACTTTTTGTTTTAtttt                     >  1:2764222/1‑36 (MQ=255)
              tGCAGGACATTTTTTAAACTTTTTGTTTTAtttttt                   <  1:6606580/36‑1 (MQ=255)
              tGCAGGACATTTTTTAAACTTTTTGTTTTAtttttt                   <  1:7010995/36‑1 (MQ=255)
              gtttgtcttgtcggcggttTTTTTGTTTTTtttttt                   >  1:6468303‑M2/20‑36 (MQ=255)
                cAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                 <  1:7186111/36‑1 (MQ=255)
                cAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                 <  1:2297911/36‑1 (MQ=255)
                  ggACATTTTTTAAACTTTTTGTTTTATTTTTTGttt               <  1:1914024/36‑1 (MQ=255)
                  ggACATTTTTTAAACTTTTTGTTTTATTTTTTGttt               <  1:7178190/36‑1 (MQ=255)
                          tttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt       >  1:4824823/1‑36 (MQ=255)
                           ttAAACTTTTTGTTTTATTTTTTGTTTTTAtttttt      <  1:2477064/36‑1 (MQ=255)
                               aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaat  >  1:665107/1‑35 (MQ=255)
                                 |                                 
AATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAG  >  REL606/3424832‑3424898

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG