Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 27 [3] | [0] 25 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 24 (0.580) | 18/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTG > REL606/3894963‑3895029
|
gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAgg < 1:5879808‑M1/36‑3 (MQ=255)
gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAgg < 1:4794483‑M1/36‑3 (MQ=255)
gtgtTTAACTGTCCAAATTTTTGGGGTCAGTACAgg > 1:799298‑M1/1‑34 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt > 1:1301283‑M1/1‑33 (MQ=255)
tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAggt < 1:4719054‑M1/36‑4 (MQ=255)
gattAACTTTCCACCTTTTTGCGGTCAGTACATACg < 1:2614663/34‑1 (MQ=0)
tttAACTGTCCAACTTTTTGGAGACAGTACATACGc > 1:5679536/1‑36 (MQ=11)
tttAACTGTCCAACTTTTGGCGTTCAGTACATACGc > 1:676134/1‑36 (MQ=2)
aaCTGTCCAACTTTTTGGGGTCAGTACAggttgccc < 1:5749452‑M1/36‑9 (MQ=255)
aCTGTCCAACTTTTTGGGGTCAGTACAggttgccca < 1:2740182‑M1/36‑10 (MQ=255)
aCTATCCAACTTTTTGGGGTCAGTACAggttgccca < 1:1225791‑M1/36‑10 (MQ=255)
gTCCAACTTTTTGGGGTCAGTACAggttgcccacgt > 1:1018221‑M1/1‑24 (MQ=255)
tCCAACTTTTTGGGGTCAGTACAggttgcccaggtg < 1:3653140‑M1/36‑14 (MQ=255)
cAACTTTTTGGGGTCAGTACAggttgcccaggtgac < 1:291042‑M1/36‑16 (MQ=255)
aaCTTTTTGGGGTCAGTACAggttgcccaggtgacc > 1:4248546‑M1/1‑20 (MQ=255)
aCTTTTTGGGGTCAGTACAggttgcccaggtgacca < 1:3644452‑M1/36‑18 (MQ=255)
ctttgGGGTCAGTACAggttgcccaggtgaccagca < 1:1341685‑M1/35‑21 (MQ=255)
tttGGGGTCAGTACAggttgcccaggtgaccagcac < 1:5647713‑M1/36‑22 (MQ=255)
tttGGGGTCAGTACAggttgcccaggtgaccagcac < 1:217109‑M1/36‑22 (MQ=255)
tttGGGGTCAGTACAggttgcccaggtgaccagcac < 1:5813060‑M1/36‑22 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:3281647‑M1/36‑25 (MQ=255)
ggggTCAGTACAggttgcccaggtgaccagcacgcc < 1:132874‑M1/36‑25 (MQ=255)
tCAGTACAggttgcccaggtgaccagcacgccgcca < 1:4898020‑M1/36‑29 (MQ=255)
cAGTACAggttgcccaggtgaccagcacgccgccaa < 1:3281474‑M1/36‑30 (MQ=255)
aGTACAggttgcccaggcgaccagcacgccgccaag > 1:4823841‑M1/1‑6 (MQ=255)
gTACAggttgcccaggtgaccagcacgccgccaaga < 1:5573964‑M1/36‑32 (MQ=255)
aCAggttgcccaggtgaccagcacgccgccaagcac < 1:3020632‑M1/36‑34 (MQ=255)
|
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGACGCCTCCTTTCTTCATAAGGGGGCGTTTTTG > REL606/3894963‑3895029
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
|