Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 510,400 | G→T | 12.8% | W201L (TGG→TTG) | allP → | predicted allantoin transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 510,400 | 0 | G→T | 12.8% | 3.0 ‑4.6 ‑0.1 | 54 | 602 | allP | predicted allantoin transporter |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (21/26): total (28/26) | ||||||||||
Fisher's exact test strand distribution p-value = 1.04e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.63e-01 |
GTGCATCTATATCGTTTTCGGCGGTATGGC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCAATCTT > REL606/510365‑510433
|
gTGCATCTATATCGTTTTCGGCGGTATGGC.GATTTg < 1:3375409/36‑1 (MQ=255)
gCATCTATATCGTTTTCGGCGGTATGGC.GATTTggg < 1:2321175/36‑1 (MQ=255)
aTCTATATCGTTTTCGGCGGTTTGGC.GGTTTtgggg > 1:1120220/1‑34 (MQ=21)
aTCTATATCGTTTTCGGCGGTATTGC.GATTTtgggg > 1:4696077/1‑34 (MQ=25)
aTCTATATCGTTTTCGGCGGTATGGC.GATTTTGGCg > 1:2348588/1‑36 (MQ=255)
cTATATCGTTTTCGGCGGTATGGC.GATTTGGGCGAt < 1:3126310/36‑1 (MQ=255)
atatCGTTTTCGGCTGTATGGC.GATTTGGGCGAttt < 1:4442712/36‑1 (MQ=255)
tatCGTTTTCGGCGGTATGGC.GATTTGGGCGATTTc < 1:5830120/36‑1 (MQ=255)
atCGTTTTCGGCGGTTTGGCGGATTTGGGGGTtttt > 1:2789403/1‑35 (MQ=12)
atCGTTTTCGGCGGTATTGC.GATTTTGGTGGTTTCa > 1:2010922/1‑36 (MQ=16)
atCGTTTTCGGCGGTATGGC.GATTTGGGCGATTTCa < 1:1089512/36‑1 (MQ=255)
atCGTTTTCGGCGGTATCGC.GATTTTGGGGATTTcc > 1:6694119/1‑35 (MQ=21)
tCGTTTTCGGCGGTATGGC.GATTTTGTCGATTTTAc > 1:536798/1‑36 (MQ=25)
tCGTTTTCGGCGGTATGGC.GATTTTGGCGGttttat > 1:5692710/1‑33 (MQ=25)
acGTTTTCGTGTGTATGAC.GATTTGGGCTATTTCAc < 1:1934423/35‑1 (MQ=12)
cGTTTTCGGCGGTATGGC.GATTTGGGCGATTTCACt < 1:4940808/36‑1 (MQ=255)
ttttCGGCGGTATGGC.GATTTGGGCGATTTCACTgg < 1:40458/36‑1 (MQ=255)
tttgCGGCGGTATGGC.GATTTGGGCGATTTCACTgg < 1:3608752/36‑1 (MQ=255)
tttCGGCGGTATTGC.GATTTTGGGGGTTTTACTGGt > 1:6895082/1‑36 (MQ=12)
tttCGGCGGTATGGC.GATTTGGGCGATTTCACTGGt < 1:2063237/36‑1 (MQ=255)
ttCGGCGGTATGGC.GATTTTGGGGATTTTACTTGtt > 1:3162512/1‑35 (MQ=16)
ttCGGCGGTATGGC.GATTTGGGCGATTTCGCTGGTc < 1:375217/36‑1 (MQ=255)
ttCGGCGGTATGGC.GATTTGGGCGATTTCACTGGTc < 1:3280160/36‑1 (MQ=255)
ggcggTGTGGC.GATTTGGGCGANTTCACTGGTCggg < 1:4342742/36‑1 (MQ=38)
ggcggTATGGC.GATTTGGGCGATTTTACTGGTAggg > 1:1929524/1‑36 (MQ=37)
ggcggTATGGC.GATTTGGGCGATTTCACTGGTCggg < 1:4739560/36‑1 (MQ=255)
ggcggTATGGC.GATTTGGGCGATTTCACTGGTCggg > 1:763939/1‑36 (MQ=255)
gcggTATGGC.GATTTGGGCGATTTCACTGGTCGGGa < 1:820583/36‑1 (MQ=255)
cggTATGGC.GATTTGGGCGATTTCACTGGTCGGGAt > 1:4827953/1‑36 (MQ=255)
ggTATGGC.GATTTGGGCGATTTCACTGGTCGGGATc < 1:2141325/36‑1 (MQ=255)
ggTATGGC.GATTTGGGCGATTTCACTGGTCGGGATc > 1:6232035/1‑36 (MQ=255)
gTATGGC.GTCTTGGGCNATTTCTCTTGTCGGGATCg < 1:2696483/36‑1 (MQ=255)
tATGGC.GATTTGGGCGATTTCACTGGTCAGGATCgg > 1:1876475/1‑36 (MQ=255)
aTGGC.GATTTGGGCGATTTCACTGGTCGGGATCGGt < 1:6305515/36‑1 (MQ=255)
tGGC.GATTTGGGCGATTTCACTGGTCGGGATCGGTc < 1:1521480/36‑1 (MQ=255)
tGGC.GATTTGGGCGATTTCACTGGTCGGGATCGGTc < 1:4909264/36‑1 (MQ=255)
ggC.GATTTGGGCGATTTCACTGGTCGGGATCGGTcc > 1:2443773/1‑36 (MQ=255)
ggC.GATTTGGGCGATTTCACTGGTCGGGATCGGTcc > 1:6400377/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa > 1:1073729/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa > 1:793376/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa > 1:7322291/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa > 1:6630171/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa > 1:6405481/1‑36 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa < 1:1669395/36‑1 (MQ=255)
gC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCa < 1:3855205/36‑1 (MQ=255)
c.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCaa < 1:1813815/36‑1 (MQ=255)
c.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCaa < 1:4332481/36‑1 (MQ=255)
gATTTGGGCGATTTCACTGGTCGGGATCGGTCCAAt < 1:5661977/36‑1 (MQ=255)
gATTTGGGCGATTTCACTGGTCGGGATCGGTCCAAt > 1:1554218/1‑36 (MQ=255)
tttGGGCGATTTCACTGGTCGGGATCGGTTCAATCt > 1:263241/1‑36 (MQ=255)
tttGGGCGATTTCACTGGTCGGGATCGGTCCAATCt > 1:592454/1‑36 (MQ=255)
tttGGGCGATTTCACTGGTCGGGATCGGTCCAATCt < 1:5348456/36‑1 (MQ=255)
tttGGGCGATTTCACTGGTCGGGATCGGTCCAATCt > 1:6488754/1‑36 (MQ=255)
tttGGGCGATTTCACTGGTCGGGATCGGTCCAATCt > 1:3380246/1‑36 (MQ=255)
ttGGGCGATTTCACTGGTCGTGATCGGTCCAATCtt > 1:1808841/1‑36 (MQ=255)
ttGGGCGATTTCACTGGTCGGGATCGGTCCAATCtt > 1:5221788/1‑36 (MQ=255)
ttGGGCGATTTCACTGGTCGGGATCGGTCCAATCtt < 1:423376/36‑1 (MQ=255)
ttGGGCGATTTCACTGGTCGGGATCGGTCCAATCtt > 1:1506280/1‑36 (MQ=255)
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GTGCATCTATATCGTTTTCGGCGGTATGGC.GATTTGGGCGATTTCACTGGTCGGGATCGGTCCAATCTT > REL606/510365‑510433
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|