Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,729,2280G→T 9.5% 0.1 ‑11.1 0.098457ygbDnitric oxide reductase
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (14/0):  ref base (34/50):  total (48/50)
Fisher's exact test strand distribution p-value = 1.48e-05
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

CCCGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAGGC  >  REL606/2729193‑2729263
                                   |                                   
cccGACGCGTGTTGATTGTNNGCGGTGGTTTGATTg                                     <  1:4283937/36‑1 (MQ=255)
 ccGCCGCGTGTTGATTGTTGGCGGTGGTTTGATTgg                                    <  1:2918950/36‑1 (MQ=255)
  cGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGt                                   <  1:3669703/36‑1 (MQ=255)
  cGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGt                                   <  1:3635235/36‑1 (MQ=255)
  cGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGt                                   >  1:2928303/1‑36 (MQ=255)
  cGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGt                                   <  1:4931402/36‑1 (MQ=255)
  cGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGt                                   <  1:6214353/36‑1 (MQ=255)
    aCGCGTGTTGATTGTTGGCGGTGGTTTTTTTGGTAg                                 >  1:1750930/1‑36 (MQ=25)
    aCGCGTGTTGATTGTTGGCGGTGGTTTTATTTGTAg                                 >  1:6396229/1‑36 (MQ=37)
    aCGCGTGTTGATTGTTGGCGGTGGTTTTATTGGTAg                                 >  1:2697003/1‑36 (MQ=255)
    aCGCGTGTTGATTGTTGGCGGTGGTTTGATTGGTAg                                 <  1:2707429/36‑1 (MQ=255)
    aCGCGTGTTGATTGTTGGCGGTGGTTTGATTGGTAg                                 <  1:5323554/36‑1 (MQ=255)
     cgcgTGTTGATTGTTGGCGGTGGTTTGATTGGTAGc                                <  1:3754423/36‑1 (MQ=255)
     cgcgTGTTGATTGTTGGCGGTGGTTTGATTGGTAGc                                <  1:5554985/36‑1 (MQ=255)
     cgcgTGTTGATTGTTGGCGGTGGTTTGATTGGTAGc                                <  1:6169912/36‑1 (MQ=255)
       cgTGTTGATTGTTGGCGGTGGTTTTTTTTGTAGCGa                              >  1:3173284/1‑36 (MQ=25)
        gtgtTGATTGTTGGCGGTTTTTTTATTTGTAGCgta                             >  1:97892/1‑34 (MQ=12)
        gtgtTGATTGTTGGCGGTGGTTTTATTTGTAGCGaa                             >  1:7673518/1‑36 (MQ=37)
        gtgtTGATTGTTGGCGGTGGTTTGATTGGTAGCGaa                             <  1:5240834/36‑1 (MQ=255)
         tgtTGATTGTTGGCGGTGGTTTGATTTGTTTCGAAc                            >  1:223371/1‑36 (MQ=21)
         tgtTGATTGTTGGCGGTGGTTTGATTGGTAGCGAAc                            <  1:5968898/36‑1 (MQ=255)
         tgtTGATTGTTGGCGGTGGTTTGATTGGTAGCGAAc                            <  1:6676883/36‑1 (MQ=255)
         tgtTGATTGTTGGCGGTGGTTTGATTGGTAGCGAAc                            <  1:7185206/36‑1 (MQ=255)
         tgtTGATTGTTGGCGGTGGTTTGATTGGTAGCGAAc                            <  1:4200265/36‑1 (MQ=255)
          tttGATTGTTGGCGGTGGTTTGATTGGTAGCGAACt                           <  1:1410377/35‑1 (MQ=255)
          gtTGATTGTTGGCGGTGGTTTTATTTGTAGCGAACt                           >  1:7759211/1‑36 (MQ=37)
          gtTGATTGTTGGCGGTGGTTTTATTGGTAGGGaaat                           >  1:1770503/1‑34 (MQ=25)
          gtTGATTGTTGGCGGGGGTTTTTTTGGTAGGGGACt                           >  1:3734106/1‑36 (MQ=16)
           ttGATTGTTGGCGGTGGTTTTTTTTGTTGGGAACtt                          >  1:1806206/1‑35 (MQ=12)
           ttGATTGTTGGCGGTGGTTTTATTTGTAGCGAACTg                          >  1:2989339/1‑36 (MQ=37)
           ttGATTGTTGGCGGTGGTTTGATTTGTAGCGAACTg                          >  1:7696930/1‑36 (MQ=255)
           ttGATTGTTGGCGGTGGTTTGATTGGTAGCGAACTg                          <  1:4026272/36‑1 (MQ=255)
            tGATTGTTGGCGGTGGTTTTATTTGTAGCGAACTgg                         >  1:1642855/1‑36 (MQ=37)
             gATTGTTGGCGGTGGTTTGATTTGTAGCGAACTggt                        >  1:7433051/1‑35 (MQ=255)
             gATTGTTGGCGGTGGTTTGATTGGTAGGGAACTggg                        >  1:434632/1‑35 (MQ=255)
             gATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGc                        <  1:455145/36‑1 (MQ=255)
             gATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGc                        <  1:6435696/36‑1 (MQ=255)
             gATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGc                        <  1:3498981/36‑1 (MQ=255)
              aTTGTTGGCGGTGGTTTGATTTGTAGCGAACTGGCg                       >  1:4289214/1‑36 (MQ=255)
              aTTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGCg                       <  1:3860468/36‑1 (MQ=255)
              aTTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGCg                       <  1:5593380/36‑1 (MQ=255)
               ttgttgGCGGTGGTTTTGTTTGTAGGGGACTggggg                      >  1:7542322/1‑33 (MQ=9)
                tgttgGCGGTGGTTTGATTTGTAGCGAAATGGCGAt                     >  1:641861/1‑36 (MQ=37)
                tgttgGCGGTGGGTTTATTGGTAGGGGACTGGGGAt                     >  1:6005426/1‑36 (MQ=12)
                 gttgGCGGTGGTTTGATTGGTAGCGAACTGGCGATg                    <  1:1990281/36‑1 (MQ=255)
                 gttgGCGGTGGTTTGATTGGTAGCGAACTGGCGATg                    <  1:3868067/36‑1 (MQ=255)
                 gttgGCGGTGGTTTGATTGGTAGCGAACTGGCGATg                    <  1:7392770/36‑1 (MQ=255)
                  ttgTCGGTGGTTTGATTGGTAGCGAACTGGCGATgg                   <  1:7621456/36‑1 (MQ=255)
                    ggCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAt                 >  1:5205328/1‑36 (MQ=255)
                     gCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAtt                >  1:2645100/1‑36 (MQ=255)
                     gCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAtt                <  1:1600074/36‑1 (MQ=255)
                     gCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAtt                <  1:7825645/36‑1 (MQ=255)
                     gCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAtt                >  1:8341719/1‑36 (MQ=255)
                     gCGGTGGTTTGATTGGTAGCGAACTGGCGATGGAtt                >  1:3654980/1‑36 (MQ=255)
                      cGGTGGTTTGATTGGTAGCGAACTGGCGATGGAttt               >  1:1293398/1‑36 (MQ=255)
                      cGGTGGTTTGATTGGTAGCGAACTGGCGATGGAttt               >  1:8131586/1‑36 (MQ=255)
                      cGGTGGTTTGATTGGTAGCGAACTGGCGATGGAttt               >  1:6880229/1‑36 (MQ=255)
                      cGGTGGTTTGACTGGTAGCGAACTGGCTATGGAttt               <  1:1925185/36‑1 (MQ=37)
                       ggtggtTTGATTGGTAGCGAACTGGCGATGGCtttt              >  1:41862/1‑36 (MQ=255)
                       ggtggtTTGATTGGTAGCGAACTGGCGATGGAtttt              >  1:456431/1‑36 (MQ=255)
                       ggtggtTTGATTGGTAGCGAACTGGCGATGGAtttt              >  1:3561961/1‑36 (MQ=255)
                       ggtggtTTGATTGGTAGCGAACTGGCGATGGAtttt              >  1:6054394/1‑36 (MQ=255)
                        gtggtTTGATTGGTAGCGAACTGGCGATGGGttttt             >  1:3653189/1‑36 (MQ=255)
                        gtggtTTGATTGGTAGCGAACTGGCGATGGAttttt             <  1:7329663/36‑1 (MQ=255)
                        gtggtTTGATTGGTAGCGAACTGGCGATGGAttttt             >  1:1688542/1‑36 (MQ=255)
                         tggtTTGATTGGTAGCGAACTGGCGATGGATTTTTg            <  1:7300549/36‑1 (MQ=255)
                         tggtTTGATTGGTAGCGAACTGGCGATGGATTTTTg            <  1:6270058/36‑1 (MQ=255)
                         tggtTTGATTGGTAGCGAACTGGCGATGGATTTTTg            <  1:2673244/36‑1 (MQ=255)
                         tggtTTGATTGGTAGCGAACTGGCGATGGATTTTTg            <  1:2575347/36‑1 (MQ=255)
                          ggtTTGATTGGTAGCGAACTGGCGATGGAttttttt           >  1:7652047/1‑34 (MQ=255)
                          ggtTTGATTGGTAGCGAACTGGCGATGGATTTTTGt           <  1:8162500/36‑1 (MQ=255)
                          ggtTTGATTGGTAGCGAACTGGCGATGGATTTTTGt           >  1:6400894/1‑36 (MQ=255)
                          ggtTTGATTGGTAGCGAACTGGCGATGGATTTTTGt           <  1:2017061/36‑1 (MQ=255)
                           gtTTGATTGGTAGCGAACTGGCGATGGATTTTTGTc          <  1:608387/36‑1 (MQ=255)
                           gtTTGATTGGTAGCGAACTGGCGATGGATTTTTGTc          <  1:5232256/36‑1 (MQ=255)
                             ttGATTGGTAGCGAACTGGCGATGGATTTTTGTCGt        >  1:5921833/1‑36 (MQ=255)
                             ttGATTGGTAGCGAACTGGCGATGGATTTTTGTCGt        <  1:3970718/36‑1 (MQ=255)
                             ttGATTGGTAGCGAACTGGCGATGGATTTTTGTCGt        >  1:3267026/1‑36 (MQ=255)
                              tGATTGGTAGCGAACTGGCTATGGATTTTTGTCGTg       <  1:7391600/36‑1 (MQ=255)
                              tGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTg       <  1:2336390/36‑1 (MQ=255)
                              tGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTg       <  1:8473184/36‑1 (MQ=255)
                              tGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTg       >  1:6851281/1‑36 (MQ=255)
                              tGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTg       <  1:7725667/36‑1 (MQ=255)
                              tGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTg       <  1:7472661/36‑1 (MQ=255)
                              tGATTGGTAGCGAAATGGCGATGGATTTTTGTTGTg       >  1:1974498/1‑36 (MQ=38)
                              tGATTGGTAGAGAACTGGCGATGGATTTTTTTGGTg       >  1:1282296/1‑36 (MQ=21)
                               gATTGGTAGCGAACTGGCGATGGATTTTTGTCGTGc      >  1:3026610/1‑36 (MQ=255)
                               gATTGGTAGCGAACTGGCGATGGATTTTTGTCGTGc      <  1:5047959/36‑1 (MQ=255)
                               gATTGGTAGCGAACTGGCGATGGATTTTTGTCGTGc      <  1:3596123/36‑1 (MQ=255)
                                aTTGGTAGCGAACTGGCGATGGATTTTTGTCGTTCa     >  1:677814/1‑36 (MQ=255)
                                aTTGGTAGCGAACTGGCGATGGATTTTTGTCGTGCa     <  1:7212187/36‑1 (MQ=255)
                                 ttGGTAGCGAACTGGCNATGGATTTTTGTCGTGCAg    >  1:4032176/1‑36 (MQ=255)
                                 ttGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAg    >  1:3611223/1‑36 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   <  1:2845275/36‑1 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   >  1:149037/1‑36 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   <  1:6961041/36‑1 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   >  1:5668852/1‑36 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   >  1:8205530/1‑36 (MQ=255)
                                  tGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAgg   <  1:1820338/36‑1 (MQ=255)
                                   ggTAGCGAACTGGCGATGGATTTTTGTCGTGCAGGc  >  1:1350407/1‑36 (MQ=255)
                                   |                                   
CCCGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGCGATGGATTTTTGTCGTGCAGGC  >  REL606/2729193‑2729263

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG