Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,760,369 | 0 | C→A | 11.2% | 1.8 ‑13.9 0.0 | 90 | 408 | ygbN | predicted transporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/15): ref base (50/25): total (50/40) | ||||||||||
Fisher's exact test strand distribution p-value = 8.78e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 103 total aligned reads displayed.
CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGC > REL606/2760334‑2760404
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cTTGCGCCAATCATTTACGGTTTTGCCAAGTTTGcc > 1:74622/1‑36 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc < 1:8099447/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc < 1:5813975/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc < 1:5797464/36‑1 (MQ=255)
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGcc > 1:4729775/1‑36 (MQ=255)
ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa < 1:1054058/36‑1 (MQ=255)
ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa < 1:4104526/36‑1 (MQ=255)
ttGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCa < 1:294994/36‑1 (MQ=255)
tGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCaa > 1:8299514/1‑36 (MQ=255)
gcgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaa > 1:7433572/1‑36 (MQ=255)
gcgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaa < 1:4511130/36‑1 (MQ=255)
cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa > 1:3428200/1‑36 (MQ=255)
cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa > 1:4854322/1‑36 (MQ=255)
cgcCAATCATTTACGGTTTTGCCAAGGTTGCCaaaa > 1:807918/1‑36 (MQ=255)
gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat > 1:4881050/1‑36 (MQ=255)
gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat > 1:7502521/1‑36 (MQ=255)
gcCAATCATTTACGGTTTTGCCAAGGTTGCCAAAat < 1:1409475/36‑1 (MQ=255)
ccAATCATTTACGGTTTTGCCAAGGTTGCCAAAata > 1:1728965/1‑36 (MQ=255)
ccAATCATTTACGGTTTTGCCAAGGTTGCCAAAata > 1:5579595/1‑36 (MQ=255)
cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat > 1:1736270/1‑36 (MQ=255)
cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat > 1:1547699/1‑36 (MQ=255)
cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat < 1:7902399/36‑1 (MQ=255)
cAATCATTTACGGTTTTGCCAAGGTTGCCAAAatat < 1:5183401/36‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc < 1:4051914/36‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc < 1:7320528/36‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAAGGTTGCCAAAATATc < 1:1271587/36‑1 (MQ=255)
aaTCATTTACGGTTTTGCCAACGTTTCCAAAATATc > 1:7168082/1‑36 (MQ=37)
aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg < 1:2642732/36‑1 (MQ=255)
aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg < 1:2242640/36‑1 (MQ=255)
aTCATTTACGGTTTTGCCAAGGTTGCCAAAATATCg < 1:2844809/36‑1 (MQ=255)
cATTTACGGTTTTGCCAAGGTTGCCAAAATATCGcc > 1:1888036/1‑36 (MQ=255)
aTTTACGGTTTTGCCAAGGTTGCCAAAATATCTCCa > 1:1657974/1‑36 (MQ=255)
aTTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCa > 1:7495739/1‑36 (MQ=255)
aTTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCa < 1:1893276/36‑1 (MQ=255)
aTTTACGGGTTTGCCAAGGTTGCCAAAATATCGCCa > 1:1248392/1‑36 (MQ=255)
ttACGGTTTTGCCAAGGTTGCCAAAATATCGCCACt > 1:3216949/1‑36 (MQ=255)
ttACGGTTTTGCAAAGGTTGCAAAAATATCGCCACt < 1:4761924/36‑1 (MQ=37)
tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc > 1:1458219/1‑36 (MQ=255)
tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc < 1:1515685/36‑1 (MQ=255)
tACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTc < 1:366523/36‑1 (MQ=255)
aCGTTTTTGCCAAGGTTGCAAAAATATCGCCACTCa < 1:947702/36‑1 (MQ=37)
aCGGTTTTGCCAAGGTTGCAAAAATATCGCCACTCa < 1:2820911/36‑1 (MQ=255)
aCGGTTTTGCAAAGGTTGCCAAAATATCGCCACTCa < 1:3739620/36‑1 (MQ=255)
cGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCaa > 1:7208678/1‑36 (MQ=255)
ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa > 1:3743943/1‑36 (MQ=255)
ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa > 1:7921077/1‑36 (MQ=255)
ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa > 1:4861690/1‑36 (MQ=255)
ggTTTTGCCAAGGTTGCCAAAATATCGCCACTCaaa > 1:7749740/1‑36 (MQ=255)
ggTTTTGCAAAGGTTGCAAAAATATCGCCACTCaaa < 1:5537228/36‑1 (MQ=37)
ggTTTTGCAAAGGTTCCAAAAATATCGCCACTCaaa < 1:4536344/36‑1 (MQ=25)
ggTTTTGAAAAGGTTGCCAAAATATCGCCACTCaaa < 1:6093505/36‑1 (MQ=37)
gatttgGCCAATTTTCCCAAAATATCGCCACTCaaa < 1:6871392/34‑1 (MQ=16)
gTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAAt > 1:7524327/1‑36 (MQ=255)
gTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAAt > 1:5516206/1‑36 (MQ=255)
gTTTTGCCAAGGTTGCAAAAATATCGCCACTCAAAt < 1:424536/36‑1 (MQ=255)
gTTTTGCAAAGGTTGCAAAAATATCGCCACTCAAAt < 1:3040973/36‑1 (MQ=37)
tttGCCAAGGTTGCCAAAATATCGCCACTCAAAttt < 1:2266356/36‑1 (MQ=255)
tttGCCAAGGTTGCCAAAATATCGCCACTCAAAttt > 1:2506925/1‑36 (MQ=255)
ttGCCAAGGTTGCCAAAATATCGCCACTTAAATTTg > 1:6529959/1‑36 (MQ=255)
ttGCAAAGGTTGCAAAAATATCGCCACTCAAATTTg < 1:5681753/36‑1 (MQ=37)
tGCCAAGGTTGCCAAAATATCGCCACTCAAATTTgg > 1:6195267/1‑36 (MQ=255)
tGCCAAGGTTGCCAAAATATCGCCACTCAAATTTgg < 1:4195504/36‑1 (MQ=255)
tGCCAAGGTTGCCAAAATATCACCACTAAAATTTgg > 1:4625594/1‑36 (MQ=37)
gcaaaGGTTGCAAAAATATCGCCACTCAAATTTGgc < 1:5312174/33‑1 (MQ=37)
gCCAAGGTTGCCAAAATATCGCCACTCAAATTTGgc > 1:936440/1‑36 (MQ=255)
gCCAAGGTTGCCAAAATATCGCCACTCAAATTTGgc > 1:2817070/1‑36 (MQ=255)
gCCAAGGTTGCAAAAATATCGCCACTCAAATTTGgc < 1:2824527/36‑1 (MQ=255)
gCCAAGGTTGCAAAAATATCGCCACTCAAATTTGgc < 1:2313851/36‑1 (MQ=255)
ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc > 1:1991023/1‑36 (MQ=255)
ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc > 1:4471711/1‑36 (MQ=255)
ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc > 1:4122579/1‑36 (MQ=255)
ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc > 1:4298138/1‑36 (MQ=255)
ccAAGGTTGCCAAAATATCGCCACTCAAATTTGgcc > 1:5580366/1‑36 (MQ=255)
cAAGGTTGCCAAAATATCGCCACTCAAATTTGgcct < 1:1490357/36‑1 (MQ=255)
cAAGGTTGCCAAAATATCGCCACTCAAATTTGgcct > 1:3072006/1‑36 (MQ=255)
cAAGGTTGCCAAAATATCGCCACTCAAATTTGgccc > 1:4103849/1‑35 (MQ=255)
cAAGGTTGCAAAAATATCGCCACTCAAATTTGgcct < 1:8153951/36‑1 (MQ=255)
aaaGGTTGAAAAAATATCGCCACTCAAATTTGgcct < 1:1507817/35‑1 (MQ=25)
aaGGTTGCCAAAATATCGCCACTCAAATTTGgcctg > 1:7159683/1‑36 (MQ=255)
aaGGTTGCCAAAATATCGCCACTCAAATTTGgcctg > 1:3569640/1‑36 (MQ=255)
aaGGTTGCCAAAATATCGCCACTCAAATTTGgcatg > 1:2014163/1‑36 (MQ=255)
aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc > 1:2715990/1‑36 (MQ=255)
aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc > 1:7992731/1‑36 (MQ=255)
aGGTTGCCAAAATATCGCCACTCAAATTTGgcctgc < 1:6168939/36‑1 (MQ=255)
aGGTTGCAAAAATATCGCCACTCAAATTTGgcctgc < 1:5470626/36‑1 (MQ=255)
ggTTGCCAAAATATCGCCACTCAAATTTGgcctgcc > 1:2797915/1‑36 (MQ=255)
tttGCAAAAATATCGCCACTCAAATTTGgcctgcct < 1:4501736/35‑1 (MQ=255)
ttGCCAAAATATCGCCACTCAAATTTGGcctgcctg > 1:2394549/1‑36 (MQ=255)
ttGCCAAAATATCGCCACTCAAATTTGGcctgcctg > 1:2079813/1‑36 (MQ=255)
gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc > 1:7681728/1‑36 (MQ=255)
gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc > 1:2208697/1‑36 (MQ=255)
gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc > 1:8027406/1‑36 (MQ=255)
gCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTc > 1:5904112/1‑36 (MQ=255)
ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg > 1:4807383/1‑36 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc > 1:7799228/1‑36 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc > 1:4212873/1‑36 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc > 1:2164024/1‑36 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc < 1:8278035/36‑1 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc < 1:7171187/36‑1 (MQ=255)
cAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGc > 1:6103760/1‑36 (MQ=255)
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CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTGCCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCGC > REL606/2760334‑2760404
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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