Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,495,437 | 0 | A→C | 4.1% | 0.2 0.0 ‑0.0 | 72 | 395 | eutQ | hypothetical protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/1): ref base (34/35): total (36/36) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.07e-01 |
CACGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTGCTACCATCAATCACTTTGATGCCG > REL606/2495403‑2495472
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cACGCAATGCGGCTCTGCGCCGTCGAAACGACCaaa < 1:802054/36‑1 (MQ=255)
cACGCAATGCGGCTCTGCGCCGTCGAAACGACCaaa > 1:2842135/1‑36 (MQ=255)
aCGCAATGCGGCTCTGCGCCGTCGAAACGACCAAAc > 1:7872959/1‑36 (MQ=255)
aCGCAATGCGGCTCTGCGCCGTCGAAACGACCAAAc > 1:1521717/1‑36 (MQ=255)
aCGCAATGCGGCTCTGCGCCGTCGAAACGACCAAAc > 1:2623409/1‑36 (MQ=255)
cGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACt > 1:4376455/1‑36 (MQ=255)
cGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACt < 1:2476770/36‑1 (MQ=255)
gCAATGCGGCTCTGCGCCGTCGAAACGACCAAACtt > 1:2095674/1‑36 (MQ=255)
cAATGCGGCTCTGCGCCGTCGAAACGACCAAACTTg < 1:6273128/36‑1 (MQ=255)
actGCGGCTCTGCGCCGTCGAAACGACCAAACTTGa < 1:3073647/34‑1 (MQ=255)
aaTGCGGCTCTGCGCCGTCGAAACGACCACACTTGa > 1:4580177/1‑36 (MQ=255)
aaTGCGGCTCTGCGCCGTCGAAACGACCAAACTTGa > 1:155486/1‑36 (MQ=255)
aTGCGGCTCTGCGCCGTCGAAACGACCAAACTTGAc < 1:404746/36‑1 (MQ=255)
aTGCGGCTCTGCGCCGTCGAAACGACCAAACTTGAc < 1:5596869/36‑1 (MQ=255)
tGCGGCTCTGCGGCGTCGAAACGACCAAACTTGACg < 1:880080/36‑1 (MQ=255)
tGCGGCTCTGCGCCGTCGAAACGACCAAACTTGACg < 1:2125600/36‑1 (MQ=255)
gCGGCTCTGCGCCGTCGAAACGACCAAACTTGACgc < 1:2252454/36‑1 (MQ=255)
cGGCTCTGCGCCGTCGAAACGACCAAACTTGACgct > 1:68779/1‑36 (MQ=255)
cGGCTCTGCGCCGTCGAAACGACCAAACTTGACgct < 1:7363326/36‑1 (MQ=255)
ggCTCTGCGCCGTCGAAACGACCAAACTTGACgctg > 1:2731887/1‑36 (MQ=255)
ggCTCTGCGCCGTCGAAACGACCAAACTTGACgctg > 1:406293/1‑36 (MQ=255)
ggCTCTGCGCCGTCGAAACGAACAAACTTGACgctg > 1:4774059/1‑36 (MQ=255)
gCTCTGCGCCGTCGAAACTACCAAACTTGACgctgc < 1:6184791/36‑1 (MQ=255)
gCTCTGCGCCGTCGAAACGACCAAACTTGACgctgc > 1:2882051/1‑36 (MQ=255)
ctctGCGCCGTCGAAACGACCAAACTTGACgctgct > 1:6608160/1‑36 (MQ=255)
tctGCGCCGTCGAAACGACCAAACTTGACGCTGCTa < 1:5870432/36‑1 (MQ=255)
tctGCGCCGTCGAAACGACCAAACTTGACGCTGCTa < 1:3285697/36‑1 (MQ=255)
tctGCGCCGTCGAAACGACCAAACTTGACGCTGCTa > 1:4033334/1‑36 (MQ=255)
ctGCGCCGTCGAAACGACCAAACTTGACGCTGCTAc < 1:2258799/36‑1 (MQ=255)
tGCGCCGTCGAAACGACCAAACTTGACGCTGCTAcc < 1:3128646/36‑1 (MQ=255)
tGCGCCGTCGAAACGACCAAACTTGACGCTGCTAcc > 1:7754064/1‑36 (MQ=255)
gcgcCGTCGAAACGACCAAACTTGACGCTGCTACCa < 1:7681902/36‑1 (MQ=255)
cgcCGTCGAAACGACCAAACTTGACGCTGCTACCat < 1:4578865/36‑1 (MQ=255)
cgcCGTCGAAACGACCAAACTTGACGCTGCTACCat < 1:3999579/36‑1 (MQ=255)
cgcCGTCGAAACGACCAAACTTGACGCTGCTACCat < 1:1051143/36‑1 (MQ=255)
gcCGTCGAAACGACCAAACTTGACGCTGCTACCatc < 1:991576/36‑1 (MQ=255)
gcCGTCGAAACGACCAAACTTGACGCTGCTACCatc < 1:1071321/36‑1 (MQ=255)
ccGTCGAAACGACCAAACTTGACGCTGCTACCatca < 1:1091045/36‑1 (MQ=255)
ccGTCGAAACGACCAAACTTGACGCTGCTACCatca < 1:7838922/36‑1 (MQ=255)
cGTCGAAACGACCAAACTTGACGCTGCTACCatcaa > 1:7840395/1‑36 (MQ=255)
cGTCGAAACGACAAAACTTGACGCTGCTACCatcaa > 1:3323408/1‑36 (MQ=255)
gTCGAAACGACCACACTTGACGCTGCTACCatcaat > 1:2484984/1‑36 (MQ=255)
gTCGAAACGACCAAACTTGACGCTGCTACCatcaat > 1:5097817/1‑36 (MQ=255)
gTCGAAACGACCAAACTTGACGCTGCTACCatcaat > 1:317192/1‑36 (MQ=255)
gTCGAAACGACCAAACTTGACGCTGCTACCatcaat < 1:4087388/36‑1 (MQ=255)
gTCGAAACGACCAAACTTGACGCGGCTACCatcaag > 1:3521081/1‑35 (MQ=255)
tCGAAACGACCAAACTTGACGCTGCTACCatcaatc < 1:1840985/36‑1 (MQ=255)
tCGAAACGACCAAACTTGACGCTGCTACCatcaatc > 1:494925/1‑36 (MQ=255)
tCGAAACGACCAAACTTGACGCGGCGACCatcaatc > 1:1562367/1‑36 (MQ=38)
cGAAACGACCACACTTGACGCTGCTACCatcaatca < 1:5527728/36‑1 (MQ=255)
gAAACGACCAAACTTGACGCTGCTACCATCAATCAc < 1:1940237/36‑1 (MQ=255)
gAAACGACCAAACTTGACGCTGCTACCATCAATCAc < 1:7202880/36‑1 (MQ=255)
aaaCGACCAAACTTGACGCTGCTACCATCAATCACt < 1:7798915/36‑1 (MQ=255)
aaaCGACCAAACTTGACGCTGCTACCATCAATCACt > 1:1828336/1‑36 (MQ=255)
aaaCGACCAAACTTGACGCTGCTACCATCAATCACt > 1:2617934/1‑36 (MQ=255)
aaaCGACCAAACTTGACGCTGCTACCATCAATCACt > 1:1595607/1‑36 (MQ=255)
aaaCGACCAAACTTGACGCTGCTACCATCAATCACt > 1:2935583/1‑36 (MQ=255)
aaCGACCAAACTTGACGCTGCTACCATCAATCACtt < 1:6389307/36‑1 (MQ=255)
aaCGACCAAACTTGACGCTGCTACCATCAATCACtt > 1:91010/1‑36 (MQ=255)
aCGACCAAACTTGACGCTGCTACCATGAATCACttt > 1:367082/1‑36 (MQ=255)
aCGACCAAACTTGACGCTGCTACCATCAATCACttt > 1:7714040/1‑36 (MQ=255)
cGACCAAACTTGACGCTGCTACCATCAATCACTTTg > 1:2129430/1‑36 (MQ=255)
cGACCAAACTTGACGCTGCTACCATCAATCACTTTg > 1:4897888/1‑36 (MQ=255)
cGACCAAACTTGACGCTGCTACCATCAATCACTTTg < 1:7853005/36‑1 (MQ=255)
gACCAAACTTGACGCTGCTACCATCAATCACTTTGa > 1:991664/1‑36 (MQ=255)
gACCAAACTTGACGCTGCTACCATCAATCACTTTGa > 1:6742577/1‑36 (MQ=255)
caCCAAACTTGACGCTGCTACCGTCAATCACTTTGa < 1:7773191/35‑1 (MQ=255)
aCCAAACTTGACGCTGCTACCATCAATCACTTTGAt < 1:3657861/36‑1 (MQ=255)
aCCAAACTTGACGCTGCTACCATCAATCACTTTGAt > 1:3337093/1‑36 (MQ=255)
aCCAAACTTGACGCTGCTACCATCAATCACTTTGAt < 1:7482739/36‑1 (MQ=255)
aCCAAACTTGACGCTGCTACCATCAATCACTTTGAt > 1:586649/1‑36 (MQ=255)
ccAAACTTGACGCTGCTACCATCAATCACTTTGATg < 1:7475505/36‑1 (MQ=255)
cAAACTTGACGCTGCTACCATCAATCACTTTGATgc < 1:3441133/36‑1 (MQ=255)
cAAACTTGACGCTGCTACCATCAATCACTTTGATgc < 1:2082561/36‑1 (MQ=255)
aaaCTTGACGCTGCTACCATCAATCATTTTGATgcc > 1:4988570/1‑36 (MQ=255)
aaaCTTGACGCTGCTACCATCAATCACTTTGATgcc > 1:152010/1‑36 (MQ=255)
aaaCTTGACGCTGCTACCATCAATCACTTTGATgcc < 1:7448691/36‑1 (MQ=255)
aaaCTTGACGCTGCTACCATCAATCACTTTGATgcc > 1:7031126/1‑36 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg < 1:1499489/36‑1 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg < 1:280534/36‑1 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg > 1:2940403/1‑36 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg < 1:3888125/36‑1 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg > 1:6799054/1‑36 (MQ=255)
aaCTTGACGCTGCTACCATCAATCACTTTGATgccg < 1:342015/36‑1 (MQ=255)
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CACGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTGCTACCATCAATCACTTTGATGCCG > REL606/2495403‑2495472
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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