Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,764,698 IS1 (–) +9 bp 44.7% intergenic (‑318/‑7) ppsA ← / → ydiA phosphoenolpyruvate synthase/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241257 =NA (NA)18 (0.310) 18/66 NT 40.9% noncoding (1/768 nt) IS1 repeat region
?REL606 1764698 = 26 (0.430)intergenic (‑318/‑15) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
* ? REL606 = 176470626 (0.450)24 (0.420) 22/66 NT 48.0% intergenic (‑326/‑7) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
?REL606 = 1974039 NA (NA)noncoding (768/768 nt) IS1 repeat region

CACTAAATCAGTAAGTTGGCAGCATCACCCA...................................  <  REL606/241285‑241257
.............................CACGGGAAGAACAAAATGGATAATGCTGTTGATCGCC  >  REL606/1764698‑1764734
                                                                  
CACTAAATCAGTAAGTTGGCAGCATCACCCACGGGA                                >  1:6112959/1‑36 (MQ=35)
 ACTAAATCAGTAAGTTGGCAGCATCACCCACGGGAA                               <  1:4784487/36‑1 (MQ=38)
  CTAAATCAGTAAGTTGGCAGCATCACCCACGGGAAG                              <  1:790364/36‑1 (MQ=38)
  CTAAATCAGTAAGTTGGCAGCATCACCCACGGGAAG                              >  1:640076/1‑36 (MQ=38)
   TAAATCAGTAAGTTGGCAGCATCACCCACGGGAAGA                             <  1:4218586/36‑1 (MQ=38)
       TCAGTAAGTTGGCAGCATCACCCACGGGAAGAACAA                         <  1:2978246/36‑1 (MQ=38)
        CAGTAAGTTGGCAGCATCACCCACGGGAAGAACAAA                        <  1:7909033/36‑1 (MQ=38)
            AAGTTGGCAGCATCACCCACGGGAAGAACAAAATGG                    <  1:3474185/36‑1 (MQ=38)
              GTTGGCAGCATCACCCACGGGAAGAACAAAATGGAT                  >  1:4523025/1‑36 (MQ=35)
                 GGCAGCATCACCCACGTGAAGAACAAAATGGATAAT               <  1:1920264/36‑1 (MQ=0)
                  GCAGCATCACCCACGGGAAGAACAAAATGGATAATG              >  1:6900385/1‑36 (MQ=1)
                    AGCATCACCCACGGGAAGAACAAAATGGATAATGCT            >  1:7169104/1‑36 (MQ=1)
                     GCATCACCCACGGGAAGAACAAAATGGATAATGCTG           <  1:949364/36‑1 (MQ=1)
                     GCATCACCCACGGGAAGAACAAAATGGATAATGCTG           >  1:6176105/1‑36 (MQ=1)
                      CATCACCCACGGGAAGAACAAAATGGATGATGCTGT          <  1:7012737/36‑1 (MQ=0)
                       ATCACCCACGGGAAGAACAAAATGGATAATGCTGTT         <  1:2073157/36‑1 (MQ=1)
                          ACCCACGGGAAGAACAAAATGGATAATGCTGTTGAT      <  1:7325812/36‑1 (MQ=1)
                            CCACGGGAAGAACAAAATGGATAATGCTGTTGATCG    <  1:5046047/36‑1 (MQ=1)
                                                                  
CACTAAATCAGTAAGTTGGCAGCATCACCCA...................................  <  REL606/241285‑241257
.............................CACGGGAAGAACAAAATGGATAATGCTGTTGATCGCC  >  REL606/1764698‑1764734

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG