New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 237270 (0.000)36 (0.880) 24/64 NT 100% noncoding (437/768 nt) IS1 repeat region
?REL606 = 666130 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG...................................  >  REL606/23692‑23727
...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  REL606/666130‑666094
                                                                         
     AATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTAC                                  <  1:5600947/36‑1 (MQ=38)
     AATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTAC                                  <  1:1769336/36‑1 (MQ=38)
     AATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTAC                                  <  1:3685439/36‑1 (MQ=38)
      ATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTACT                                 <  1:5230431/36‑1 (MQ=38)
       TCGCGCCAGCGCTGGCTGTTTTACGCGTATTTACTt                                >  1:38402/1‑35 (MQ=255)
        CGCGCCATCGCTGGCTGTTTTACGCGTATGTACTGA                               <  1:1538999/36‑1 (MQ=255)
         GCGCCAGCGCTGGCTGTTTTACGCGTATGTACTGAC                              <  1:432554/36‑1 (MQ=38)
         GCGCCAGCGCTGGCTGTTTTACGCGTATGTACTGAC                              >  1:4654631/1‑36 (MQ=38)
           GCCAGCGCTGGCTGTTTTACGCGTATTTACTGACCC                            >  1:1141244/1‑36 (MQ=255)
             CAGCGCTGGCTGTTTTACGCGTATGTACTGACCCCA                          <  1:5307933/36‑1 (MQ=1)
              AGCGCTGGCTGTTTTACGCGTATGTACTGACCCCAA                         <  1:1421350/36‑1 (MQ=1)
              AGCGCTGGCTGTTTTACGCGTATGTACTGACCCCAA                         <  1:3531869/36‑1 (MQ=1)
               GCGCTGGCTGTTTTACGCGTTTGTACTGACCCCAAA                        >  1:3179497/1‑36 (MQ=0)
               GCGCTGGCTGTTTTACGCGTATGTACTGACCCCAAA                        >  1:435081/1‑36 (MQ=1)
                  CTGGCTGTTTTACGCGTATGTACTGACCCCAAAAAG                     <  1:4914893/36‑1 (MQ=1)
                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG                  >  1:2363949/1‑36 (MQ=1)
                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG                  >  1:1571398/1‑36 (MQ=1)
                      CTGTTTTACGCGTATGTACTGACCCCAAAAAGTTGG                 >  1:424332/1‑36 (MQ=1)
                       TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA                >  1:3578380/1‑36 (MQ=1)
                       TGTTTTACGCGTATGTACTAACCCCAAAAAGTTGGA                >  1:1892948/1‑36 (MQ=0)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC               <  1:5867629/36‑1 (MQ=1)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC               >  1:4154537/1‑36 (MQ=1)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC               >  1:3972769/1‑36 (MQ=1)
                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC               >  1:1255268/1‑36 (MQ=1)
                         TTTTACGCGTATGTACTGACCCCAAACAGTTGGACA              >  1:762742/1‑36 (MQ=0)
                         TTTTACGCGTATGTACTGACCCCAAAAAGTTGGACA              >  1:196983/1‑36 (MQ=1)
                         TTTTACGCGTATGTACTGACCCCAAAAAGTTGGACA              >  1:589968/1‑36 (MQ=1)
                         TTTTACGCGTATGTACTGACCCCAAAAAGTTGGACA              >  1:5911784/1‑36 (MQ=1)
                          TTTACGCGTATGTACTGACCCCAAAAAGTTGGAAAG             >  1:1592056/1‑36 (MQ=0)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT            <  1:5281451/36‑1 (MQ=1)
                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT            >  1:1957861/1‑36 (MQ=1)
                            TACGCGTATGTACTGACCCCAAAAAGTTGGACAGTT           <  1:504952/36‑1 (MQ=1)
                             ACGCGTATGTACTGACCCCAAAAAGTTGGACAGTTA          <  1:3467705/36‑1 (MQ=1)
                             ACGCGTATGTACTGACCCCAAAAAGTTGGACAGTTA          >  1:5485647/1‑36 (MQ=1)
                              CGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAA         <  1:3464020/36‑1 (MQ=1)
                               GCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAA        <  1:4686943/36‑1 (MQ=1)
                                                                         
GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG...................................  >  REL606/23692‑23727
...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  REL606/666130‑666094

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG