Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,807,033 | 0 | T→. | 2.9% | 0.5 ‑1.6 ‑0.0 | 70 | coding (67/1392 nt) | uhpT | sugar phosphate antiporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (29/38): total (31/39) | ||||||||||
Fisher's exact test strand distribution p-value = 1.98e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
CACCAGGTAGGATTGCATGAACGGTTTGAACCACATTTTGCGCCGCACTTCGAGCGGAAGGTCCAGGGTCG > REL606/3806998‑3807068
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caccaGGTAGGATTGCATTAACGGTTTGAACCACAt < 1:5705773/36‑1 (MQ=255)
caccaGGTAGGATTGCATGAACGGTTTGAACCACAt < 1:3168478/36‑1 (MQ=255)
caccaGGTAGGATTGCATGAACGGTTTGAACCACAt < 1:7100337/36‑1 (MQ=255)
accgGGTATGATTGCATGAACGGTTTGAACCACAtt < 1:2690895/36‑1 (MQ=37)
accaGGTAGGATTGCATGAACGGTTTGAACCACAtt > 1:436172/1‑36 (MQ=255)
accaGGTAGGATTGCATGAACGGTTTGAACCACAtt > 1:7797827/1‑36 (MQ=255)
accaGGTAGGATTGCATGAAAGGTTTGAACCACAtt > 1:2232509/1‑36 (MQ=255)
accaGGTAGGATTGAATGAACGGTTTGAACCACAtt < 1:4703452/36‑1 (MQ=255)
ccgggTAGGATTGCCTGAACGGTTTGAACCACAttt < 1:2615426/33‑1 (MQ=37)
ccaGGTAGGATTGCATGAACGGTTTGAACCACAttt < 1:2539282/36‑1 (MQ=255)
ccaGGTAGGATTGCATGAACGGTTTGAACCACAttt < 1:1984431/36‑1 (MQ=255)
ccaGGTAGGATTGCATGAACGGTTTGAACCACAttt < 1:1122400/36‑1 (MQ=255)
caGGTAGGATTGCATGAACGGTTTGAACCACAtttt < 1:508284/36‑1 (MQ=255)
aGGTAGGATTGCATGAACGGTTTGAACCACATTTTg < 1:4095845/36‑1 (MQ=255)
aGGTAGGATTGCATGAACGGTTTGAACCACATTTTg < 1:7233105/36‑1 (MQ=255)
ggTAGGATTGCATGAACGGTTTGAACCACATTTTgc > 1:3861896/1‑36 (MQ=255)
ggTAGGATTGCATGAACGGTTTGAACCACATTTTgc < 1:2167004/36‑1 (MQ=255)
ggTAGGATTGCATGAACGGTTTGAACCACATTTTgc < 1:7749647/36‑1 (MQ=255)
ggTAGGATTGCATGAACGGTTTGAACCACATTTTgc < 1:1695569/36‑1 (MQ=255)
ggTAGGATTGCATGAACGGTTTGAACCACATTTTga > 1:5220931/1‑35 (MQ=255)
gTAGGATTGCATGAACGGTTTGAACCACATTTTgcg > 1:2487391/1‑36 (MQ=255)
gTAGGATTGCATGAACGGTTTGAACCACATTTTgcg > 1:6142669/1‑36 (MQ=255)
gTAGGATTGCATGAACGGTTTGAAACACATTTTgcg < 1:575631/36‑1 (MQ=255)
tAGGATTGCATGAACGGTTTGAACCACATTTTgcgc < 1:7118631/36‑1 (MQ=255)
aGGATTGCATGAACGGTTTGAACCGCATTTTGcgcc < 1:2333023/36‑1 (MQ=255)
aGGATTGCATGAACGGTTTGAACCACATTTTGcgcc > 1:7422370/1‑36 (MQ=255)
aGGATTGCATGAACGGTTTGAACCACATTTTGcgcc < 1:3404742/36‑1 (MQ=255)
aGGATTGCATGAACGGTTTGAACCACATTTTGcgcc < 1:4441613/36‑1 (MQ=255)
ggATTGCATGAACGGTTTGAACCACATTTTGcgccg < 1:7001180/36‑1 (MQ=255)
gATTGCATGAACGGTTTGCACCACATTTTGcgccgc > 1:3895812/1‑36 (MQ=255)
gATTGCATGAACGGTTTGAACCACATTTTGcgccgc > 1:5397827/1‑36 (MQ=255)
gATTGCATGAACGGTTTGAACCACATTTTGcgccgc < 1:2416600/36‑1 (MQ=255)
gATTGCATGAACGGTTTGAACCACATTTTGcgccgc < 1:3414307/36‑1 (MQ=255)
gATTGCATGAACGGTTTGAACCACATTTTGcgccgc < 1:3741823/36‑1 (MQ=255)
ttGCATGAACGGTTTGAACCACATTTTGCGCCGCAc < 1:4384401/36‑1 (MQ=255)
ttGCATGAACGGTTTGAACCACATTTTGCGCCGCAc < 1:5902032/36‑1 (MQ=255)
ttGCATGAACGGTTTGAACCACATTTTGCGCCGCAc > 1:2435594/1‑36 (MQ=255)
tGCATGAACGGTTTGAACCACATTTTGCGCCGCACt > 1:4336026/1‑36 (MQ=255)
tGCATGAACGGTTTGAACCACATTTTGCGCCGCACt > 1:5175719/1‑36 (MQ=255)
tGCATGAACGGTTTGAACCACACTTTGCGCCGCACt < 1:3174386/36‑1 (MQ=255)
gCATGAACGGTTTGAACCACATTTTGCGCCGCACtt > 1:5276136/1‑36 (MQ=255)
gCATGAACGGTTTGAACCACATTTTGCGCCGCACtt < 1:1201814/36‑1 (MQ=255)
gCATGAACGGTTTGAACCACATTTTGCGCCGCACtt < 1:2538013/36‑1 (MQ=255)
cATGAACGGTTTGAACCACATTTTGCGCCGCACTTc < 1:1915930/36‑1 (MQ=255)
cATGAACGGTTTGAACCACATTTTGCGCCGCACTTc < 1:5226090/36‑1 (MQ=255)
aTGAACGGTTTGAACCACATTTTGCGCCGCACTTCg > 1:741243/1‑36 (MQ=255)
aTGAACGGTTTGAACCACATTTTGCGCCGCACTTCg > 1:5032543/1‑36 (MQ=255)
tGAACGGTTTGAACCACATTTTGCGCCGCACTTCGa < 1:7705502/36‑1 (MQ=255)
gAACGGTTTGAACCACATTTTGCGCCGCACTTCGAg < 1:5243250/36‑1 (MQ=255)
gAACGGTTTGAACCACATTTTGCGCCGCACTTCGAg > 1:3419456/1‑36 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc < 1:5225402/36‑1 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc > 1:4780312/1‑36 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc > 1:7337788/1‑36 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc < 1:6061914/36‑1 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc < 1:1696576/36‑1 (MQ=255)
aaCGGTTTGAACCACATTTTGCGCCGCACTTCGAGc > 1:3948641/1‑36 (MQ=255)
aaCAGTTTGAACCACATTTTGCGCCGCACTTCGAGc < 1:3019839/36‑1 (MQ=255)
aCGGTTTGAACCACATTTTGCGCCGCACTTCGAGCg > 1:1516241/1‑36 (MQ=255)
aCGGTTTGAACCACATTTTGCGCCGCACTTCGAGCg > 1:6369877/1‑36 (MQ=255)
aCGGTTTGAACCACATTTTGCGCCGCACTTCGAGCg > 1:388357/1‑36 (MQ=255)
aCGGTTTGAACCACATTTTACGGCGCACTTCGAGCg > 1:1755929/1‑36 (MQ=37)
cGGTTTGAACCACATTTTGCTCCGCACTTCGAGCgg < 1:4673624/36‑1 (MQ=255)
cGGTTTGAACCACATTTTGCGCCGCACTTCGAGCgg > 1:4681682/1‑36 (MQ=255)
ggTTTGAACCACATTTTGCGCCGCACTTCGAGCGGa > 1:4775998/1‑36 (MQ=255)
ggTTTGAACCACATTTTGCGCCGCACTTCGAGCGGa < 1:1403572/36‑1 (MQ=255)
tttGAACCACATTTTGCGCCGCACTTCGAGCGGAAg < 1:7633460/36‑1 (MQ=255)
ttGAACCACATTTTGCGCCGCACTTCGAGCGGAAgg > 1:3284320/1‑36 (MQ=255)
ttGAACCACATTTTGCGCCGCACTTCGAGCGGAAgg < 1:7248115/36‑1 (MQ=255)
tGAACCACATTTTGCGCCGCACTTCGAGCGGAAGGt < 1:2084884/36‑1 (MQ=255)
aaCCACATTTTGCGCCGCACTTCGAGCGGAAGGTcc < 1:7744361/36‑1 (MQ=255)
aaCCACATTTTGCGCCGCACTTCGAGCGGAAGGTcc < 1:911309/36‑1 (MQ=255)
aaCCACA.TTTGCGCCGCACTTCGAGCGGTAGGTCCa > 1:7396355/1‑36 (MQ=37)
aaCCACA.TTTGCGCCGCACTTCGAGCGGAAGGTCCa > 1:518407/1‑36 (MQ=38)
aCCACATTTTGCGCCGCTCTTCGAGCGGAAGGTCCa < 1:7765835/36‑1 (MQ=255)
aCCACATTTTGCGCCGCACTTCGAGCGGAAGGTCCa < 1:4329626/36‑1 (MQ=255)
ccACATTTTGCGCCGCACTTCGAGCGGAAGGTCCAg < 1:2112467/36‑1 (MQ=255)
cacaTTTTGCGCCGCACTTCGAGCGGAAGGTCCAgg > 1:4175387/1‑36 (MQ=255)
acaTTTTGCGCCGCACTTCGAGCGGAAGGTCCAggg > 1:1899038/1‑36 (MQ=255)
acaTTTTGCGCCGCACTTCGAGCGGAAGGTCCAggg > 1:6454252/1‑36 (MQ=255)
acaTTTTGCGCCGCACTTCGAGCGGAAGGTCCAggg > 1:5121033/1‑36 (MQ=255)
caTTTTGCGCCGCACTTCGAGCGGAAGGTCCGGGGt < 1:5201996/36‑1 (MQ=255)
aTTTTGCGCCGCACTTCGAGCGGAAGGTCCAGGGTc > 1:3474457/1‑36 (MQ=255)
aTTTTGCGCCGCACTTCGAGCGGAAGGTCCAGGGTc < 1:3735183/36‑1 (MQ=255)
ttttGCGCCGCACTTCGAGGGGAAGGTCGAGGGTca > 1:6257149/1‑35 (MQ=37)
ttttGCGCCGCACTTCGAGCGGAAGGTCCAGGGTCg > 1:2747810/1‑36 (MQ=255)
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CACCAGGTAGGATTGCATGAACGGTTTGAACCACATTTTGCGCCGCACTTCGAGCGGAAGGTCCAGGGTCG > REL606/3806998‑3807068
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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