Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 100% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.000)30 (0.900) 22/52 NT 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)23 (0.600) 20/60 NT 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007
                                   |                                   
gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                     >  1:4717413‑M1/1‑36 (MQ=255)
gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                     >  1:272862‑M1/1‑36 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    <  1:3402801‑M1/2‑1 (MQ=255)
 cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                    >  1:3782378‑M1/1‑36 (MQ=255)
 cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                    <  1:3833806‑M1/36‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcggtacaGGt                                   >  1:4427451‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   <  1:4326177‑M1/3‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:2380889‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:4759185‑M1/34‑36 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   <  1:3130921‑M1/3‑1 (MQ=255)
  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:2205835‑M1/34‑36 (MQ=255)
  catctcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:22947‑M1/34‑36 (MQ=255)
  aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                   >  1:3632023‑M1/1‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:2315526‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:5172234‑M1/33‑36 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  <  1:4242589‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  <  1:240448‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  <  1:5436547‑M1/4‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                 <  1:1962010‑M1/5‑1 (MQ=255)
    tttcatcgtccaaaaaaatgggtgcagtacaGGTTg                                 <  1:4484278‑M1/5‑1 (MQ=255)
     ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt                                <  1:3878335‑M1/36‑4 (MQ=255)
      tcatcgtccaacacaatgggtgcagtacaGGTTGAt                               >  1:826624‑M1/30‑36 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:4062944‑M1/30‑36 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:410976‑M1/30‑36 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:80228‑M1/30‑36 (MQ=255)
      ctatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:5276125‑M1/30‑36 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              <  1:539370‑M1/8‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:4507231‑M1/28‑36 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:2394444‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:2307517‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:224989‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:187811‑M1/9‑1 (MQ=255)
          tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                           >  1:4892034‑M1/1‑28 (MQ=255)
           gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                          >  1:5346608‑M1/25‑36 (MQ=255)
           gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                          <  1:1692704‑M1/12‑1 (MQ=255)
            tgtTCAGCATATAGGGGGCCTCGGGTtgtactgacc                         >  1:3769548‑M1/1‑26 (MQ=255)
              ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                       >  1:3826141‑M1/1‑24 (MQ=255)
               aacaaaatgggtgcagtacaGGTTGATAGTAAAata                      <  1:4720448‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagtacaGGTTGATAGTAAAata                      >  1:236244‑M1/21‑36 (MQ=255)
                catcataTAGGGGGCCTCGGGTtgtactgaccccaa                     <  1:987645‑M1/33‑15 (MQ=255)
                cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                     <  1:707666‑M1/36‑15 (MQ=255)
                acaaaatgggtgcagtacaGGTTGATAGTAAAatat                     >  1:673980‑M1/20‑36 (MQ=255)
                acaaaatgggtgcagtacaGGTTGATAGTAAAatat                     <  1:4990107‑M1/17‑1 (MQ=255)
                 caaaatgggtgcagtacaGGTTGATAGTAAAATATc                    >  1:892227‑M1/19‑36 (MQ=255)
                 aGCATATAGGGGGCCTCGGGTtgtactgaccccaaa                    <  1:3137023‑M1/36‑16 (MQ=255)
                 aGCATATAGGGGGCCTCGGGTtgtactgaccccaaa                    >  1:4167776‑M1/1‑21 (MQ=255)
                  gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                   <  1:817432‑M1/36‑17 (MQ=255)
                  aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                   <  1:4602659‑M1/19‑1 (MQ=255)
                  aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                   <  1:4411100‑M1/19‑1 (MQ=255)
                  aaaatgggtgcagtacaGGTGGATAGTAAAATATCa                   <  1:1020695‑M1/19‑1 (MQ=255)
                   aaatgggtgcagtacaGGTTGATAGTAAAATATCAc                  >  1:5216610‑M1/17‑36 (MQ=255)
                   aaatgggtgcagtacaGGTTGATAGTAAAATATCAc                  >  1:4876620‑M1/17‑36 (MQ=255)
                    atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                 >  1:685946‑M1/1‑18 (MQ=255)
                    atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                 >  1:2371042‑M1/1‑18 (MQ=255)
                    aatgggtgccgtacaGGTTGATAGTAAAATATCACt                 >  1:2559927‑M1/16‑36 (MQ=255)
                     tataGGGGGCCTCGGGTtgtactgacccaaaaaagt                >  1:3319914‑M1/1‑17 (MQ=255)
                     atgggtgcagtacaGGTTGATAGTAAAATATCACTc                >  1:3562526‑M1/15‑36 (MQ=255)
                     atgggtgcagtacaGGTTGATAGTAAAATATCACTc                >  1:3283782‑M1/15‑36 (MQ=255)
                       gggtgcagtacaGGTTGATAGTAAAATATCACTCgg              >  1:2480121‑M1/13‑36 (MQ=255)
                        aGGGGGCCTCGGGTtgtactgaccccaaaaagttgg             >  1:2514643‑M1/1‑14 (MQ=255)
                         gtgcagtacaGGTTGATAGTAAAATATCACTCgggg            <  1:379287‑M1/26‑1 (MQ=255)
                         gtgcagtacaGGTTGATAGTAAAATATCACTCgggg            <  1:2178390‑M1/26‑1 (MQ=255)
                         gtgcagtacaGGTTGATAGTAAAATATCACTCgggg            >  1:4963619‑M1/11‑36 (MQ=255)
                         gggggCCTCGGGTtgtactggccccaaaaagttgga            <  1:3406796‑M1/36‑24 (MQ=255)
                         gggggCCTCGGGTtgtactgaccccaaacagttgga            >  1:5848045‑M1/1‑13 (MQ=255)
                         gggggCCTCGGGTtgtactgaccccaaaaagttgga            >  1:4524928‑M1/1‑13 (MQ=255)
                          tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc           >  1:2496934‑M1/10‑36 (MQ=255)
                          tgcagtacaGGTTGATAGTAAAATATCACTCGGGGc           >  1:3921496‑M1/10‑36 (MQ=255)
                           gggCCTCGGGTtgtactgaccccaaaaagttggaca          <  1:3463919‑M1/36‑26 (MQ=255)
                            ggCCTCGGGTtgtactgaccccaaaaagttggacag         >  1:2962408‑M1/1‑10 (MQ=255)
                            cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt         >  1:271247‑M1/8‑36 (MQ=255)
                               tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc      >  1:2491464‑M1/5‑36 (MQ=255)
                               tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc      <  1:4786851‑M1/32‑1 (MQ=255)
                               cTCGGGTtgtactgaccccaaaaagttggacagtta      >  1:3205064‑M1/1‑7 (MQ=255)
                                tCGGGTtgtactgaccccaaaaagttggacagttaa     <  1:2347529‑M1/36‑31 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     <  1:1308760‑M1/33‑1 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     <  1:4236362‑M1/33‑1 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     <  1:4716616‑M1/33‑1 (MQ=255)
                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     >  1:5348035‑M1/4‑36 (MQ=255)
                                 cGGGTtgtactgaccccaaaaagttggacagttaaa    >  1:5880490‑M1/1‑5 (MQ=255)
                                  gggTtgtactgaccccaaaaagttggacagttaaac   <  1:16812‑M1/36‑33 (MQ=255)
                                  gggTtgtactgaccccaaaaagttggacagttaaac   >  1:4102121‑M1/1‑4 (MQ=255)
                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   <  1:1897642‑M1/35‑1 (MQ=255)
                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   >  1:4429756‑M1/2‑36 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:5094903‑M1/1‑3 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  <  1:1423866‑M1/36‑34 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:4100918‑M1/1‑3 (MQ=255)
                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:2328686‑M1/1‑3 (MQ=255)
                                   GGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTa  >  1:2165403‑M1/1‑36 (MQ=255)
                                   GGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTa  >  1:4863714‑M1/1‑36 (MQ=255)
                                   |                                   
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG