Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606553,5610T→C100.0% 0.1 11721ECB_00512putative tail component of prophage
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

TACATCCGCAGTGTGAACACCGTTGGCAAATCGGCA  >  REL606/553539‑553574
                      |             
tACATCCGCAGTGGGAAATCCGCGCGAAAATCGGct  >  1:2603125/1‑35 (MQ=2)
                      |             
TACATCCGCAGTGTGAACACCGTTGGCAAATCGGCA  >  REL606/553539‑553574

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 5 ≤  ATCG  < 10 ≤  ATCG  < 29 ≤  ATCG