Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,446,442 | C→A | 24.7% | V164F (GTT→TTT) | mntH ← | manganese transport protein MntH |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,446,442 | 0 | C→A | 24.7% | 9.0 ‑4.2 ‑0.0 | 31 | 490 | mntH | manganese transport protein MntH |
Reads supporting (aligned to +/- strand): new base (1/7): ref base (15/8): total (16/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.55e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.72e-01 |
GGAGAAAATCAACTCGACAATGTAAGCCGCGGCAACAAACAACAGTAACCCGCCAATCACTTTCTCCAGCG > REL606/2446407‑2446477
|
ggAGAAAATCAACTCGACAATGTAAGCCGCGGcaac < 1:202636/36‑1 (MQ=255)
ggAGAAAATCAACTCGACAATGTAAGCCGCGGcaac > 1:516469/1‑36 (MQ=255)
ggAGAAAATCAACTCGACAATGTAAGCCCCGGcaac > 1:2546442/1‑36 (MQ=255)
gagaAAATCAACTCGACAATGTAAGCCGCGGaaaca > 1:2982515/1‑36 (MQ=255)
aaaaTCAACTCGACAATGTAAGCCGCGGCaccaaac > 1:4926234/1‑36 (MQ=255)
aaaaTCAACTCGACAATGTAAGCCGCGGCaacaaac < 1:5558220/36‑1 (MQ=255)
aaaaTCAACTCGACAATGTAAGCCGCGGCaacaaac < 1:6504809/36‑1 (MQ=255)
aaaaTCAACTCGACAATGTAAGCCGCGGCaacaaac > 1:3566460/1‑36 (MQ=255)
aaaTCAACTCGACAATGTAAGCCGCGGCaacaaaca > 1:4581506/1‑36 (MQ=255)
aaaTAAACACGACAATGTAAGCCGCGGCaacaaaca < 1:3591411/36‑1 (MQ=38)
tCAACTCGACAATGTAAGCCGCGGCAACAAacaaca < 1:7959309/36‑1 (MQ=255)
tCAACTCGACAATGTAAGCCGCGGCAACAAacaaca > 1:2567856/1‑36 (MQ=255)
tCAACTCGACAATGTAAGCCGCGGCAACAAacaaca < 1:7122933/36‑1 (MQ=255)
cAACTCGACAATGTAAGCCGCGGCAACAAACAACAg > 1:3606769/1‑36 (MQ=255)
aaCTCGACAATGTAAGCCGCGGCAACAAACAACAGt < 1:6299880/36‑1 (MQ=255)
aaCTCGACAATGTAAGCCGCGGCAACAAACAACAGt > 1:6676767/1‑36 (MQ=255)
aaCTCGACAATGTAAGCCGCGGCAACAAACAACAGt < 1:5641889/36‑1 (MQ=255)
aaCTCGACAATGTAAGCCGCGGCAACAAACAACAGt > 1:4782699/1‑36 (MQ=255)
tCGACAATGTAAGCCGCGGCAACAAACAACAGTAAc < 1:6661398/36‑1 (MQ=255)
tCGACAATGTAAGCCGCGGCAACAAACAACAGTAAc > 1:716056/1‑36 (MQ=255)
cGACAATGTAAGCCGCGGCAACAAACAACAGTAAcc < 1:4371990/36‑1 (MQ=255)
gACAATGAAAGCCGCGGCAACAAACAACAGTAAccc > 1:620064/1‑36 (MQ=255)
aaggTAAGCCGCGGCAACAAACAACAGTAACCCGcc < 1:6410195/33‑1 (MQ=255)
aaTGTAAGCCGCGGCAACAAACAACAGTAACCCGcc > 1:7071755/1‑36 (MQ=255)
aaTGTAAGCCGCGGCAAAAAACAACAGTAACCCGcc < 1:6074133/36‑1 (MQ=255)
aTGTAAGCCGCGGCAACAAACAACAGTAACCCGCCa > 1:4147704/1‑36 (MQ=255)
aTGTAAGCCGCGGCAACAAACAACAGTAACCCGCCa < 1:3091959/36‑1 (MQ=255)
tAAGCCGCGGCAACAAACAACAGTAACCCGCCAATc > 1:7042131/1‑36 (MQ=255)
tAAGCCGCGGCAAAAAACAACAGTAACCCGCCAATc < 1:8431268/36‑1 (MQ=255)
tAAGCCGCGGCAAAAAACAACAGTAACACGCCAATc > 1:1385518/1‑36 (MQ=37)
tAAGCCGCGGAAAAAAACAAAAGTAACCCGCCAATc < 1:5883544/36‑1 (MQ=25)
aaGCCGCGGCAACAAACAACCGTAACCCGACAATCa > 1:4335800/1‑36 (MQ=37)
aaGCCGCGGCAACAAACAACAGTAACCCGCCAATCa > 1:6725883/1‑36 (MQ=255)
aaGCCGCGGAAAAAAAAAACAGTAACCCGCCAATCa < 1:3658753/36‑1 (MQ=25)
aGCCGCGGCAACAAACAACAGTAACCCGCCAATCAc > 1:5958985/1‑36 (MQ=255)
aGCCGCGGAAAAAAACAACAGTAACCCGCCAATCAc < 1:2197138/36‑1 (MQ=37)
ccccgGAAAAAAAAAAAAGTAACCCGCCAATCACtt < 1:3551607/33‑1 (MQ=16)
ccGCGGCAACAAACAACAGTAACCCGCCAATCACtt > 1:1052724/1‑36 (MQ=255)
cgcgGAAAAAAACAACAGTAACCCGCCAATCACttt < 1:4785809/36‑1 (MQ=37)
cgGCAACAAACAACAGTAACCCGCCAATCACTTtct > 1:3861490/1‑36 (MQ=255)
ggCAACAAACAACAGTAACCCGCCAATCACTTtctc > 1:7189157/1‑36 (MQ=255)
caacaaACAACAGTAACCCGCCAATCACTTTCTCCa > 1:2756916/1‑36 (MQ=255)
caaacaaCAGTAACGCGCCAATCACTTTCTCCAGCg > 1:5500328/1‑36 (MQ=255)
|
GGAGAAAATCAACTCGACAATGTAAGCCGCGGCAACAAACAACAGTAACCCGCCAATCACTTTCTCCAGCG > REL606/2446407‑2446477
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|