Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,096,955 | C→G | 33.7% | G324G (GGC→GGG) | baeS → | sensory histidine kinase in two‑component regulatory system with BaeR |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,096,955 | 0 | C→G | 33.7% | 2.5 ‑4.5 0.0 | 25 | 972 | baeS | sensory histidine kinase in two‑component regulatory system with BaeR |
Reads supporting (aligned to +/- strand): new base (8/1): ref base (5/11): total (13/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.12e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GTAGATTTGATCCCACTGCTGGAAGTGGCGGGCGGCGC.ATTTCGCGAACGATTCGCCAGTCGTGGCCTGAA > REL606/2096920‑2096990
|
gTAGATTTGATCCCACTGCTGGAAGTGGCGggcggc < 1:7024286/36‑1 (MQ=255)
aTTTGATCCCACTGCTGGAAGTGGCGGGCGgggcgg > 1:1933099/1‑34 (MQ=37)
ttGATCCCACTGCTGGAAGTGGCGGGGGGGGC.Cttt > 1:1902989/1‑36 (MQ=21)
ttGATCCCACTGCTGGAAGTGGCGGGCGGCGC.Attt < 1:2095204/36‑1 (MQ=255)
tGATCCCACTGCTGGAAGTGGCGGGCGGCGC.ATTTc < 1:5041378/36‑1 (MQ=255)
aTCCCACTGCTGGAAGTGGCGGGGGGGGC.Ctttttc > 1:5102069/1‑33 (MQ=16)
aTCCCACTGCTGGAAGTGGCGGGCGGGGC.GCTTcgc > 1:2877825/1‑36 (MQ=21)
aTCCCACTGCTGGAAGTGGCGGGCGGCGC.ATTTcgc < 1:1350297/36‑1 (MQ=255)
tCCCACTGCTGGAAGTGGCGGGGGGCGG.GTTTcgcc > 1:1397433/1‑35 (MQ=21)
ccACTGCTGGAAGTGGCGGGGGGGGCGATTTcgcgg > 1:3425909/1‑35 (MQ=16)
ccACTGCTGGAAGTGGCGGGCGGGGG.GTTTcgcgga > 1:151485/1‑34 (MQ=18)
cACTGCTGGAAGTGGCGGGGGGGGC.CTTTTGCGGAc > 1:3663884/1‑36 (MQ=12)
cACTGCTGGAAGTGGCGGGCGGCGC.ATTTCGCGAAc < 1:2302859/36‑1 (MQ=255)
aCTGCTGGAAGTGGCGGGCGGGGC.CTTTCGCGGACg > 1:3980381/1‑36 (MQ=21)
aCTGCTGGAAGTGGCGGGCGGCGC.ATTTCGCGAACg < 1:1907363/36‑1 (MQ=255)
gctgGAAGTGGCGGCGGGCGG.CTTTTGCGCACGGtt > 1:2256384/1‑36 (MQ=0)
acggAAGGGGGGGGCGGGGC.ATTGCGCGAACGATTc < 1:5651984/34‑1 (MQ=16)
ggAAGTGGCGGGCGGCGC.ATTTCGCGAACGATTCGc < 1:2628302/36‑1 (MQ=255)
aaGTGGCGGGCGGGGC.ATTTAGCGAACGATTCGCCa > 1:2027924/1‑36 (MQ=37)
aGTGGCGGGCGGCGC.ATTTCGCGAACGATTCGCCAg < 1:401872/36‑1 (MQ=255)
gTGGCGGGCGGCGC.ATTTCGCGAACGATTCTCCAGt < 1:1082485/36‑1 (MQ=255)
gTGGCGGGCGGCGC.ATTTCGCGAACGATTCGCCAGt < 1:6903183/36‑1 (MQ=255)
ggcgggcgGCGC.ATTTCGCGAACGATTCGCCAGTCg > 1:7026906/1‑36 (MQ=255)
gcgggcggCGC.ATTTCGCGAACGATTCGCCAGTCGt < 1:7247158/36‑1 (MQ=255)
cgggcggCGC.ATTTCGCGAACGATTCGCCAGTCGTg > 1:4648953/1‑36 (MQ=255)
cgggcggCGC.ATTTCGCGAACGATTCGCCAGTCGTg < 1:1143297/36‑1 (MQ=255)
gggcggCGC.ATTTCGCGAACGATTCGCCAGTCGTgg > 1:870145/1‑36 (MQ=255)
cggcgC.ATTTCGCGAACGATTCGCCAGTCGTGGCCt > 1:4194551/1‑36 (MQ=255)
ggcgC.ATTTCGCGAACGATTCGCCAGTCGTGGCCTg < 1:7638778/36‑1 (MQ=255)
ggcgC.ATTTCGCGAACGATTCGCCAGTCGTGGCCTg > 1:2474595/1‑36 (MQ=255)
gcgc.ATTTCGCGAACGATTCGCCAGTCGTGGCCTGa > 1:5204078/1‑36 (MQ=255)
gcgc.ATTTCGCAAACGATTCGCCAGTCGTGGCCTGa < 1:6198386/36‑1 (MQ=255)
cgc.ATTTCGCGAACGATTCGCCAGTCGTGGCCTGaa < 1:3613610/36‑1 (MQ=255)
|
GTAGATTTGATCCCACTGCTGGAAGTGGCGGGCGGCGC.ATTTCGCGAACGATTCGCCAGTCGTGGCCTGAA > REL606/2096920‑2096990
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 12 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
|