Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,535,004 | G→T | 11.8% | C84F (TGC→TTC) | focB → | predicted formate transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,535,004 | 0 | G→T | 11.8% | 4.8 ‑4.6 ‑0.0 | 42 | 251 | focB | predicted formate transporter |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (13/24): total (18/24) | ||||||||||
Fisher's exact test strand distribution p-value = 1.01e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.94e-01 |
TTGCTTTGCACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACG > REL606/2534969‑2535038
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ttgctttgcACTCGGCTTTATTTTGCTGGCGGTTTg < 1:425698/36‑1 (MQ=255)
ttgctttgcACTCGGCTTTATTTTGCTGGCGGTTTg < 1:2046454/36‑1 (MQ=255)
tgctttgcACTCGGCTTTATTTTGCTGGCGGTTTGc < 1:6012737/36‑1 (MQ=255)
ctttgcACTCGGCTTTATTTTGCTGGCGGTTTGCgg < 1:4308127/36‑1 (MQ=255)
tttgcACTCGGCTTTATTTTGCTGGCGGTTTGCGGc < 1:7201571/36‑1 (MQ=255)
tttgcACTCGGCTTTATTTTGCTGGCGGTTTGCGGc < 1:3444840/36‑1 (MQ=255)
gcACTCGGCTTTATTTTGCTGGCGGTTTGCGGCAcc < 1:6258640/36‑1 (MQ=255)
aCTCGGCTTTATTTTGCTGGCGGTTTTCGGGAcccg > 1:4252514/1‑34 (MQ=18)
tCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGcc < 1:7673072/36‑1 (MQ=255)
tCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGcc < 1:5844039/36‑1 (MQ=255)
cGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCt < 1:3587206/36‑1 (MQ=255)
cGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCt < 1:7485327/36‑1 (MQ=255)
gCTTTATTTTGCTGGCGGTTTTTTGCACTAGccata > 1:7359571/1‑33 (MQ=9)
gCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGt < 1:517871/36‑1 (MQ=255)
gCTTTATTTTGCCGGCGGTTTGCGGCACCAGCCTGt < 1:2855350/36‑1 (MQ=255)
tttATTTTGCTGGCGGTTTTTGTCACCAGCCTTttt > 1:6903336/1‑35 (MQ=12)
tttATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTc < 1:7422921/36‑1 (MQ=255)
tATTTTGCTGGCGGTTTTTGGGACCAGCCTTTTTAc > 1:6433864/1‑36 (MQ=9)
aTTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCAcc < 1:3214022/36‑1 (MQ=255)
tttGCTGGCGGTTTTCGGCACCAGCCTGTTTACCtc > 1:4454855/1‑36 (MQ=37)
tGCGGGCGGTTTGCGTCCCCAGCCTGTTCCCCtcgt < 1:7810895/36‑1 (MQ=19)
gCTGGGGTTTTGCGGCACCAGACTGTTCACCtcgtc < 1:560910/36‑1 (MQ=21)
gCTGGCGGTTTGCGGCACCAGCCTGTTCACCtcgtc < 1:2433685/36‑1 (MQ=255)
gCTGGCGGTTTGCGGCACCAGCCTGTTCACCtcgtc < 1:2565204/36‑1 (MQ=255)
cTGGCGGTTTGCGGCACCAGCCTGTTCACCtcgtcg < 1:5628230/36‑1 (MQ=255)
cTGGCGGTTTGCGGCACCAGCCTGTTCACCtcgtcg > 1:6123060/1‑36 (MQ=255)
tGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCgg < 1:1802043/36‑1 (MQ=255)
tGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCgg < 1:425405/36‑1 (MQ=255)
ggCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGt < 1:2217039/36‑1 (MQ=255)
ggCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGt < 1:2856074/36‑1 (MQ=255)
ggCGGTTTGCGGCACCAGCCGGTTTACCTCGTCTGt > 1:389259/1‑36 (MQ=25)
gCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTa > 1:5439213/1‑36 (MQ=255)
gCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTa > 1:5183248/1‑36 (MQ=255)
cGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTaa > 1:582157/1‑36 (MQ=255)
cGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTaa > 1:134449/1‑36 (MQ=255)
ggTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAAt > 1:5095765/1‑36 (MQ=255)
ggTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAAt > 1:2407271/1‑36 (MQ=255)
gTTTGCGGCACCAGCCTGTTCACCTCGTCGGTGATg > 1:6810212/1‑36 (MQ=255)
gTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATg > 1:2412316/1‑36 (MQ=255)
gTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATg > 1:4271114/1‑36 (MQ=255)
ttGCGGCACCAGCCTGTTCACCTCGTCGGTAATGAc < 1:835661/36‑1 (MQ=255)
ttGCGGCACCAGCCTGTTCACCTCGTCGGTAATGAc > 1:1263222/1‑36 (MQ=255)
tGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACg < 1:6927567/36‑1 (MQ=255)
tGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACg > 1:4711790/1‑36 (MQ=255)
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TTGCTTTGCACTCGGCTTTATTTTGCTGGCGGTTTGCGGCACCAGCCTGTTCACCTCGTCGGTAATGACG > REL606/2534969‑2535038
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|