Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,524,736 | +G | 4.3% | coding (126/885 nt) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,524,736 | 1 | .→G | 4.3% | 2.9 ‑1.7 ‑0.2 | 46 | coding (126/885 nt) | fdnH | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (18/26): total (20/26) | ||||||||||
Fisher's exact test strand distribution p-value = 1.84e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.41e-01 |
GCAAAACTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGA > REL606/1524701‑1524771
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gCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt > 1:3359224/1‑36 (MQ=255)
gCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt < 1:1521721/36‑1 (MQ=255)
cAAAACTTATCGACGTTTCCACCTGTATCGGCTGtt > 1:6915303/1‑35 (MQ=255)
aaaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aa < 1:1397198/36‑1 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.taa > 1:7484211/1‑36 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aaa < 1:1478245/36‑1 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aaa < 1:1837302/36‑1 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.TAAg > 1:6623378/1‑36 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAg < 1:61850/36‑1 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAg < 1:2512765/36‑1 (MQ=255)
aCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGc < 1:3758079/36‑1 (MQ=255)
aCTTATCGACGTTTCCACCTGTATCGGCTGG.TAAGc > 1:2142534/1‑36 (MQ=17)
aCTCATCGACGTTACCACCTGTATCGGCTGT.taaac > 1:2713/1‑34 (MQ=17)
cTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGcc < 1:1683190/36‑1 (MQ=255)
cTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGcc < 1:6732450/36‑1 (MQ=255)
tcaTCGACGTTACCACCTGTATCGGCTGTGAAAGct > 1:5418475/3‑35 (MQ=17)
tcaTCGACGTTACCACCTGTATCGGCTGTGAAAGct > 1:3784773/3‑35 (MQ=17)
tATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTg < 1:7067727/36‑1 (MQ=40)
aTCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGt < 1:7462499/36‑1 (MQ=38)
tCGACGTTTCCACCTGTATCGGCTGT.TAAGCCTGTc > 1:3870989/1‑36 (MQ=255)
tCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTc < 1:1225770/36‑1 (MQ=38)
tCGACGTTTCCACCTGTATCGGCTGG.GAAGCCTTTc > 1:5763801/1‑36 (MQ=14)
cggcGTTTCCACCTGTATCTGCCGT.AAAGCCTGTCa < 1:1572591/33‑1 (MQ=14)
cGACGTTTCCACCTGTATCGGCTGT.AAAGCCTTTct > 1:4968419/1‑35 (MQ=255)
gACGTTTCCACCTGTATCGGCTGT.AAAAGCTGTCAg > 1:3812951/1‑36 (MQ=14)
gACGTTACCACCTGTATCGGCTGT.CAATGCTGTGAg > 1:7817899/1‑36 (MQ=9)
aCGTTTCCACCTGTATCGGCTGT.AAAACCTTTCCgg > 1:3415054/1‑36 (MQ=14)
cGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGt < 1:3733389/36‑1 (MQ=38)
gTTTCCACCTGTATCGGCTGT.TAAGACTGTCAgggg > 1:6251438/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGT.AAAGCCTTTCAgggg > 1:169607/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGT.AAAACCTGTCAgggg > 1:6249114/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGG.TAAGCCTGTTAgggg > 1:6177761/1‑34 (MQ=14)
tttCCTCCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:3721980/36‑1 (MQ=255)
tttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:2435315/36‑1 (MQ=38)
tttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:3467384/36‑1 (MQ=38)
ttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGc > 1:2761321/1‑36 (MQ=35)
ttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGc < 1:3600150/36‑1 (MQ=35)
tCCACCTGTATCGGCTGT.AAAACCTGTCAGGTgggg > 1:5035737/1‑34 (MQ=11)
tGTATTGGCTGT.AAATCCTGCGTGGTGGCCTTTTct > 1:6769911/1‑35 (MQ=37)
tATCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGa < 1:7910732/36‑1 (MQ=38)
tATCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGa < 1:2262081/36‑1 (MQ=38)
aTCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAg < 1:1792758/36‑1 (MQ=38)
aTCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAg < 1:212006/36‑1 (MQ=38)
tCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGt < 1:7706261/36‑1 (MQ=38)
tCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGt < 1:1750570/36‑1 (MQ=38)
tCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGt < 1:1749406/36‑1 (MQ=38)
tCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGt > 1:4728363/1‑36 (MQ=38)
cGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTg < 1:7694211/36‑1 (MQ=38)
cGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTg < 1:7837006/36‑1 (MQ=38)
tGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAAc < 1:6072162/36‑1 (MQ=38)
tGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAAc < 1:6881447/36‑1 (MQ=38)
gT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACg < 1:1801276/36‑1 (MQ=38)
gT.AAAGCCTGTCAGGCGGCGTGTTCGGAGTGGAACg > 1:6324778/1‑36 (MQ=255)
gT.AAAGCCTGTCAGGCGGCGTGGTCGGAGTGGAACg > 1:7289424/1‑36 (MQ=14)
t.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGa > 1:3701783/1‑36 (MQ=38)
t.AAAGCCTGTCAGGTGGCGTGTTCGGAGGGGAACgc > 1:2988443/1‑35 (MQ=255)
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GCAAAACTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGA > REL606/1524701‑1524771
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|