Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,174,628 | C→G | 14.0% | G402G (GGC→GGG) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,174,628 | 0 | C→G | 14.0% | 2.6 ‑3.9 0.0 | 37 | 1206 | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (13/18): total (19/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.97e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CATCTGCTGTTAAAAATGGCGGGCGATGGCGTGGGCGAAGCCAAATCGTGGCTGGTGGATTATTTCAAAC > REL606/2174593‑2174662
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catcTGCTGTTAAAAATGGCGGGCGATGGCGTGGGc < 1:3656101/36‑1 (MQ=255)
tgctgTTAAAAATGGCGGGCGATGGAGTGGGCGAAg > 1:938437/1‑36 (MQ=255)
tgTTAAAAATGGCGGGCGATGGCGTGGGGGGAGCCa > 1:4120257/1‑36 (MQ=25)
tgTTAAAAATGGCGGGCGATGGCGTGGGGGGAGCCa > 1:7297327/1‑36 (MQ=25)
tgTTAAAAATGGCGGGCGATGGCGTGGGGGAAGCCa > 1:3040718/1‑36 (MQ=255)
gTTAAAAATGGCGGGCGATGGCGTGGGCGAAGCCaa > 1:5633308/1‑36 (MQ=255)
tAAAAATGGCGGGCGATGGGGTGGGGGAAGGCAAAt > 1:3498300/1‑36 (MQ=21)
aaaaaTGGCGGGCGATGGCGTGGGCGAAGCCAAATc < 1:1691009/36‑1 (MQ=255)
aaaaaTGGCGGGCGATGGCGTGGGCGAAGCCAAATc < 1:395499/36‑1 (MQ=255)
aaaaaTGGCGGGCGACAGCGTGGGGGAAGGCAAATc > 1:4547690/1‑36 (MQ=16)
aaaaaTGGCGGGCCGTGGCGGGGGCGAAGCCATATc > 1:3634006/1‑36 (MQ=19)
aaaaTGGCGGGCGATGGCGTGGGGGAAGCCAAATCg > 1:5611536/1‑36 (MQ=255)
aaaTGGCGGGCGATGGCGTGGGCGAAGCCAAATCGt > 1:3556047/1‑36 (MQ=255)
aaaTGGCGGGCGATGGCGTGGGCGAAGCCAAATCGt < 1:7505305/36‑1 (MQ=255)
aaTGGCGGGCGATGGCGTGGGCGAAGCCAAATCGTg < 1:4091068/36‑1 (MQ=255)
aTGGGGGGCGATGGCGTGGGCGAAGCCAAATCGTgg < 1:3692400/36‑1 (MQ=255)
gcgggcgATGGCGTGGGCGAAGCCAAATCGTGGCtg < 1:3136642/36‑1 (MQ=255)
cggtcgATGGCGTGGGCGAAGCCAAATCGTGGCtgg < 1:6258509/36‑1 (MQ=255)
cgggcgATGGCGTGGGCGAAGCCAAATCGTGGCtgg < 1:7326093/36‑1 (MQ=255)
gggcgATGGCGTGGGCGAAGCCAAATCGTGGCtggt < 1:7647084/36‑1 (MQ=255)
gggcgATGGCGTGGGCGAAGCCAAATCGTGGCtggt < 1:1280351/36‑1 (MQ=255)
ggcgATGGCGTGGGCGAAGCCAAATCGTGGCtggtg < 1:4180907/36‑1 (MQ=255)
gcgCTGGCGTGGGCGAAGCCAAATCGTGGCtggtgg < 1:4518231/36‑1 (MQ=255)
cgATGGCGTGGGCGAAGCCAAATCGTGGCtggtggg > 1:1960390/1‑35 (MQ=255)
gATGGCGTGGGCGAAGCCAAATCGTGGCTGGTGGat > 1:2715558/1‑36 (MQ=255)
gATGGCGTGGGCGAAGCCAAATCGTGGCTGGTGGat < 1:3720756/36‑1 (MQ=255)
aTGGCGTGGGCGAAGCCAAATCGTGGCTGGTGGatt < 1:4536745/36‑1 (MQ=255)
aTGGCGTGGGCGAAGCCAAATCGTGGCTGGGGGttt > 1:970785/1‑36 (MQ=37)
gcttGGGCGAAGCCAAATCGTGGGTGGTGGattatt < 1:905331/33‑1 (MQ=37)
gCGTGGGCGAAGCCAAATCGTGGCTGGTGGgttatt > 1:1771082/1‑36 (MQ=255)
gCGTGGGCGAAGCCAAATCGTGGCTGGTGGattatt < 1:156689/36‑1 (MQ=255)
cGTGGGCGAAGCCAAATCGTGGCTGGTGGATTAttt > 1:2663569/1‑36 (MQ=255)
gTGGGCGAAGCCAAATCGTGGCTGGTGGATTATTTc < 1:5157608/36‑1 (MQ=255)
tGGGCGAAGCCAAATCGTGGCTGGTGGTTTAttttt > 1:1095143/1‑34 (MQ=37)
tGGGCGAAGCCAAATCGTGGCTGGTGGATTATTTCa < 1:2607763/36‑1 (MQ=255)
ggCGAAGCCAAATCGTGGCTGGTGGATTATTTCaaa > 1:3412057/1‑36 (MQ=255)
ggCGAAGCCAAATCGTGGCTGGTGGATTATTTCaaa > 1:6801431/1‑36 (MQ=255)
gacGAAGCCAAATCGTGGCTGGTGGATTATTTCaac < 1:2115748/34‑2 (MQ=255)
gCGAAGCCAAATCGTGGCTGGTGGATTATTTCAAAc > 1:5466148/1‑36 (MQ=255)
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CATCTGCTGTTAAAAATGGCGGGCGATGGCGTGGGCGAAGCCAAATCGTGGCTGGTGGATTATTTCAAAC > REL606/2174593‑2174662
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|