Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,383,460 | 0 | G→T | 10.0% | 1.1 ‑7.9 0.0 | 79 | 619 | purA | adenylosuccinate synthetase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (12/0): ref base (31/35): total (44/35) | ||||||||||
Fisher's exact test strand distribution p-value = 3.72e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC > REL606/4383426‑4383495
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cGACATCCTGACTTCTATGGTGGTTTACGTTTCTGa > 1:1446949/1‑36 (MQ=255)
cGACATCCTGACTTCTATGGTGGTTGACGTTTCTGa < 1:5382240/36‑1 (MQ=255)
gACATCCTGACTTCTATGGTGGTTGATGTTTCTTAc > 1:713798/1‑36 (MQ=37)
gACATCCTGACTTCTATGGTGGTTGACGTTTCTGAc < 1:6543535/36‑1 (MQ=255)
cATCCTGTCTTCTATGGTGGTTGACGTTTCTGACCt < 1:3979826/36‑1 (MQ=255)
cATCCTGACTTCTATGGTGGTTTACGTTTCTTACCt > 1:5785340/1‑36 (MQ=37)
cATCCTGACTTCTATGGTGGCTTACGTTTCTTACCt > 1:6353980/1‑36 (MQ=25)
aTCCTGACTTCTATGGTGGTTTACGTTTTTTACCtc > 1:1554334/1‑35 (MQ=25)
aTCCTGACTTCTATGGTGGTTGACGTTTTTGACCTg > 1:5267674/1‑36 (MQ=255)
aTCCTGACTTCTATGGTGGTTGACGTTTCTGACCTg > 1:80983/1‑36 (MQ=255)
aTCCTGACTTCTATGGTGGGTTACGTTTCTGACCTg > 1:4882659/1‑36 (MQ=38)
tCCTGACTTCTATGGTGGTTTACGTTTCTTACCttc > 1:1007465/1‑34 (MQ=37)
tCCTGACTTCTATGGTGGTTGACGTTTTTTACCttc > 1:3762194/1‑34 (MQ=25)
tCCTGACTTCTATGGTGGTTGACGTTTCTTACCttc > 1:4256241/1‑34 (MQ=37)
ccTGACTTCTATGGTGGTTTACGTTTCTTACCTGCt > 1:3697138/1‑36 (MQ=37)
ccTGACTTCTATGGTGGTTGACGTTTCTGACCTGCt < 1:3265496/36‑1 (MQ=255)
cTGACTTCTATGGTGGTTTACGTTTCTTACCTTCTc > 1:752731/1‑36 (MQ=25)
cTGACTTCTATGGTGGTTGACGTTTCTGCCCTGCTc < 1:6708750/36‑1 (MQ=255)
cTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTc < 1:4863276/36‑1 (MQ=255)
cTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTc < 1:3046722/36‑1 (MQ=255)
tGACTTCTATGGTGGTTTACGTTTATTACCTGCTCg > 1:5946745/1‑36 (MQ=25)
gACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGa < 1:2465090/36‑1 (MQ=255)
aCTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAc < 1:7398941/36‑1 (MQ=255)
cTTCTATGGTGGTTGACGTTTCTTACCTTCTCGAcc > 1:5637032/1‑36 (MQ=25)
cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc < 1:4305448/36‑1 (MQ=255)
cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc < 1:6009870/36‑1 (MQ=255)
tCTATGGTGGTTTACGTTTCTTACCTGCTCGACCAg > 1:2259881/1‑36 (MQ=21)
tCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAg < 1:7501287/36‑1 (MQ=255)
cTATGGTGGTTGACGTTTCTGACCTGCTCGACCAgg < 1:5879197/36‑1 (MQ=255)
aTGGTGGTTGACGTTTCTGACCTTCTCGACCAGgcg > 1:5018789/1‑36 (MQ=255)
tggtggTTGACGTTTCTGACCTGCTCGACCAGgcgc < 1:6956261/36‑1 (MQ=255)
ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg > 1:1497788/1‑36 (MQ=255)
ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg > 1:5987269/1‑36 (MQ=255)
ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg > 1:4708208/1‑36 (MQ=255)
ggtggtTGACGTTTCTGAACTGCTCGACCAGGcgcg > 1:1944749/1‑36 (MQ=255)
ggtggtTGACGTTGCTGACCTGCTCGACCAGGcgcg > 1:3206581/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt > 1:6863574/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt > 1:1707973/1‑36 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt < 1:2563542/36‑1 (MQ=255)
gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt > 1:445089/1‑36 (MQ=255)
tggtTGACGTTTCTGACCTGCTCTACCAGGCGCGTc < 1:7024032/36‑1 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa < 1:3033606/36‑1 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa < 1:1880501/36‑1 (MQ=255)
ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa < 1:6962235/36‑1 (MQ=255)
gtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAg < 1:7050402/36‑1 (MQ=255)
gtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAg < 1:1740893/36‑1 (MQ=255)
ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc > 1:6810931/1‑36 (MQ=255)
ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc < 1:359806/36‑1 (MQ=255)
ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc > 1:6500411/1‑36 (MQ=255)
tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg < 1:6898638/36‑1 (MQ=255)
tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg > 1:7208562/1‑36 (MQ=255)
tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg < 1:4416779/36‑1 (MQ=255)
tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg < 1:2383281/36‑1 (MQ=255)
tGAAGTTTCTCACCTGCTCGACCAGGCGCGACAGCg > 1:6826508/1‑36 (MQ=25)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt > 1:5422610/1‑36 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:7144790/36‑1 (MQ=255)
gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt < 1:282046/36‑1 (MQ=255)
gACGTTTCTGACCTGATCGACCAGGCGCGTCAGCGt > 1:2340999/1‑36 (MQ=255)
aCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTg > 1:1121443/1‑36 (MQ=255)
aCGTTTCTGACCTGCTCGACAAGGCGCGTCAGCgcg > 1:5328586/1‑34 (MQ=25)
aCGTTTCTGACCTCCTCGACCAGGCGCGTCAGCGTg > 1:6605387/1‑36 (MQ=255)
cGTTTCTGCCCTGCTAGACCAGGCGCGTCAGCGTgg < 1:4828980/36‑1 (MQ=37)
cGTTTCTGCCCTACACGCCCAGGCGCGTCAGCGTgg < 1:5720403/36‑1 (MQ=16)
cGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTgg > 1:7353279/1‑36 (MQ=255)
gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc < 1:1944288/36‑1 (MQ=255)
gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc > 1:5054074/1‑36 (MQ=255)
gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc < 1:3364753/36‑1 (MQ=255)
tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg > 1:6332734/1‑36 (MQ=255)
tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg > 1:6721962/1‑36 (MQ=255)
tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg < 1:5156074/36‑1 (MQ=255)
tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg > 1:3449229/1‑36 (MQ=255)
tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt > 1:4736933/1‑36 (MQ=255)
tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt > 1:810902/1‑36 (MQ=255)
tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt > 1:2182809/1‑36 (MQ=255)
cggACCTGCTCGACCAGGCGCGTCAGCGTGGCGAtt < 1:83917/34‑1 (MQ=255)
cTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAtt > 1:6967939/1‑36 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt < 1:4597053/36‑1 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt < 1:3331006/36‑1 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt < 1:2280404/36‑1 (MQ=255)
tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt > 1:49797/1‑36 (MQ=255)
gACCTGCTCGACCAGGCGCGTCAGCGTGGCGGTTTc > 1:2949701/1‑36 (MQ=255)
gACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTc < 1:360328/36‑1 (MQ=255)
gACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTc < 1:2909334/36‑1 (MQ=255)
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CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC > REL606/4383426‑4383495
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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