Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,289,962 Δ16 bp 100% coding (96‑111/4554 nt) gltB → glutamate synthase, large subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3289962 3289977 16 28 [2] [0] 27 gltB glutamate synthase, large subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 32899612 (0.040)26 (0.580) 21/70 NT 96.3% coding (95/4554 nt) gltB glutamate synthase, large subunit
?REL606 3289978 = 0 (0.000)coding (112/4554 nt) gltB glutamate synthase, large subunit

TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCC  >  REL606/3289943‑3290013
                                   |                                   
gggttcccgcagagcctgggggaggttcacgatatc                                     <  1:114273‑M2/1‑1 (MQ=255)
   ttcccgcagagcctgggggaggttcacgatatCTTg                                  >  1:2549687‑M2/33‑36 (MQ=255)
    tcccgcagagcctgggggaggttcacgatatCTTga                                 <  1:3141426‑M2/5‑1 (MQ=255)
      ccgcagagcctgggggaggttcacgatatCTTgaga                               >  1:3537964‑M2/30‑36 (MQ=255)
      ccgcagagcctgggggaggttcacgatatCTTgaga                               >  1:212150‑M2/30‑36 (MQ=255)
        gcagagcctgggggaggttcacgatatCTTGAGAgg                             <  1:3666502‑M2/9‑1 (MQ=255)
         cagagcctgggggaggttcacgatatCTTGAGAggg                            >  1:479698‑M2/27‑36 (MQ=255)
           gaggctgggggaggttcacgatatCTTGAGAGGGAt                          <  1:2718163‑M2/12‑1 (MQ=255)
            agcctgggggaggttcactatatCTTGAGAGGGATa                         <  1:2284033‑M2/13‑1 (MQ=255)
            agcctgggggaggttcacgatatCTTGAGAGGGATa                         >  1:2769377‑M2/24‑36 (MQ=255)
            agcctgggggaggttcacgatatCTTGAGAGGGATa                         >  1:1091927‑M2/24‑36 (MQ=255)
             gcctgggggaggttcacgatatCTTGAGAGGGATaa                        >  1:725672‑M2/23‑36 (MQ=255)
               ctgggggaggttcacgatatCTTGAGAGGGATAACt                      <  1:734381‑M2/16‑1 (MQ=255)
               ctgggggaggttcacgatatCTTGAGAGGGATAACt                      >  1:1537984‑M2/21‑36 (MQ=255)
                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    <  1:2331652‑M2/18‑1 (MQ=255)
                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    <  1:675965‑M2/18‑1 (MQ=255)
                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    <  1:4453292‑M2/18‑1 (MQ=255)
                  ggggaggttcacgatatCTTGAGAGGGATAACtgtg                   >  1:4836491‑M2/18‑36 (MQ=255)
                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg             >  1:2439790‑M2/12‑36 (MQ=255)
                         ttcacgatatCTTGAGAGGGATAACTGTGGTTTCgg            >  1:2284574‑M2/11‑36 (MQ=255)
                             cgatatCTTGAGAGGGATAACTGTGGTTTCGGCCTg        <  1:3836818‑M2/30‑1 (MQ=255)
                              gatatCTTGAGAGGGATAACTGTGGTTTCGGCCTGa       >  1:2561014‑M2/6‑36 (MQ=255)
                                tatCTTGAGAGGGATAACTGTGGTTTCGGCCTGATc     >  1:4012450‑M2/4‑36 (MQ=255)
                                 atCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCg    >  1:2794408‑M2/3‑36 (MQ=255)
                                 atCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCg    >  1:2071972‑M2/3‑36 (MQ=255)
                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGc   >  1:3576220‑M2/2‑36 (MQ=255)
                                   cTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGcc  <  1:840464/36‑1 (MQ=255)
                                   |                                   
TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCC  >  REL606/3289943‑3290013

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG