Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 904,176 | +C | 9.1% | coding (249/369 nt) | ECB_00850 → | putative regulator of late gene expression |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 904,176 | 1 | .→C | 9.1% | 7.7 ‑2.9 ‑0.0 | 33 | coding (249/369 nt) | ECB_00850 | putative regulator of late gene expression |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (20/10): total (20/13) | ||||||||||
Fisher's exact test strand distribution p-value = 5.24e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.08e-01 |
TACACGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTATTACCAC > REL606/904141‑904211
|
tACACGGAAATGCCAGTGAAAGTCAGTGGCTTTaaa < 1:3866211/36‑1 (MQ=255)
tACACGGAAATGCCAGTGAAAGTCAGTGGCTTTaaa < 1:7222973/36‑1 (MQ=255)
tACACGGAAATGCCAGTGAAAGTCAGTGGCTTTaaa > 1:3536014/1‑36 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c < 1:1928277/36‑1 (MQ=255)
acacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.c < 1:6246112/36‑1 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca < 1:7452014/36‑1 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca < 1:6018067/36‑1 (MQ=255)
cacGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.Ca < 1:6021003/36‑1 (MQ=255)
acGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAg < 1:4564316/36‑1 (MQ=255)
cGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGc < 1:1457950/36‑1 (MQ=255)
ggAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGcc < 1:2876409/36‑1 (MQ=255)
ggAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGcc > 1:4925524/1‑36 (MQ=255)
ggAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGcc > 1:4839699/1‑36 (MQ=255)
ggAAATGCCAATGAATCATAGTGGCTTTAAA.CAGcc < 1:388191/36‑1 (MQ=16)
aaaaTGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCg < 1:2840482/35‑1 (MQ=255)
aaTGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGAt > 1:4236152/1‑36 (MQ=255)
aaTGCCAGTGAAAGTCAGAGGATATAAA.CAGCCGag > 1:6293817/1‑35 (MQ=25)
aaTGCCAGTGAAAGCCAGCGGCTTTAAA.CAGCAGAt > 1:4585991/1‑36 (MQ=21)
tGAAAGTCAGTGGCTTTAAA.CAGCCGATAGatgatg > 1:2820758/1‑36 (MQ=255)
tGAAAGGCAGTGGCTTTAAA.CAGACGATAGatgatg > 1:2489157/1‑36 (MQ=38)
tGAAAGACAGTGGCTTTAAA.CAAACGATAGaggatg > 1:7695712/1‑36 (MQ=19)
aaaGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCg > 1:6379192/1‑36 (MQ=255)
aaGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCgg > 1:5391545/1‑36 (MQ=255)
aGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGa > 1:6065521/1‑36 (MQ=255)
taaGTGGTTTAAAA.CAGCCGATAGATGATGCGGAAt < 1:6461248/34‑1 (MQ=25)
cAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATg > 1:7238670/1‑36 (MQ=255)
cAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATg > 1:3642126/1‑36 (MQ=255)
gTGGTTTTAAC.CAGCCGATAGATGATGCGGAATGGa < 1:195054/36‑1 (MQ=37)
gTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGa > 1:4431909/1‑36 (MQ=255)
gggtttAAACCAGCCGATAGATGATGCGGAATGGAc < 1:7574324/33‑1 (MQ=25)
ggCTTTAAA.CAGCCGATAGATGATGCGGAATGGACt > 1:463371/1‑36 (MQ=255)
ggCTTTAAA.CAGCCGATAGATGATGCGGAATGGACt > 1:3287702/1‑36 (MQ=255)
ggattAAACCAGCCGATAGATGATGCGGAATGGACt < 1:2619035/33‑1 (MQ=25)
gCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTa > 1:2096016/1‑36 (MQ=255)
gCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTa > 1:2404257/1‑36 (MQ=255)
tttAAACCAGCCGATAGATGATGCGGAATGGACTAt < 1:6548168/36‑1 (MQ=37)
ttAAA.CAGCCGATAGATGATGCGGTATGGACTATTa > 1:425200/1‑36 (MQ=255)
ttAAA.CAGCCGATAGATGATGCGGAATGGACTATTa > 1:7528369/1‑36 (MQ=255)
aaa.CAGCCGATAGATGATGCGGAATGGACTATTacc > 1:6702430/1‑36 (MQ=255)
aaa.CAGCCGATAGATGATGCGGAATGGACTATTacc > 1:5556136/1‑36 (MQ=255)
aa.CAGCCGATAGATGATGCGGAATGGACTATTacca > 1:6298142/1‑36 (MQ=255)
aa.CAGCCGATAGATGATGCGGAATGGACTATTacca > 1:1904090/1‑36 (MQ=255)
a.CAGCCGATAGATGATGCGGAATGGACTATTaccac > 1:5895496/1‑36 (MQ=255)
a.CAGCCGATAGATGATGCGGAATGGACTATTaccac > 1:4910920/1‑36 (MQ=255)
a.CAGCCGATAGATGATGCGGAATGGACTATTaccac > 1:1903860/1‑36 (MQ=255)
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TACACGGAAATGCCAGTGAAAGTCAGTGGCTTTAAA.CAGCCGATAGATGATGCGGAATGGACTATTACCAC > REL606/904141‑904211
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
|