Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546958–547700 555923–555877 8178–8966 17 [14] [0] 105 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)60 (1.120) 39/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 117 total aligned reads displayed.

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128
                                  |                                   
atcatACACTAAATCAGTAAGTTTGCAGCATCACCc                                    >  1:4348209‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:2329219‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:2465198‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:6795313‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:6784865‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:6650352‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:620040‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:309262‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3339244‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3506769‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:4326906‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:4678366‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:5989267‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:5826734‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:4936450‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:4988404‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:5007397‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:5736758‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:165733‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:7787638‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:2141527‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:1829606‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:1198988‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGCAAGTTGGCAGCATCACCc                                    <  1:1447895‑M2/36‑2 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:3471534‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:6097007‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:5123027‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:4199055‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGGAAGTTGGCAGCATCACCca                                   <  1:7213474‑M2/36‑3 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcaa                                  >  1:7231316‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcaa                                  >  1:5218823‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcaa                                  <  1:2287903‑M2/36‑4 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcacg                                 <  1:1507905‑M2/36‑5 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:2705458‑M2/36‑5 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 >  1:5748810‑M2/1‑32 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:5748071‑M2/36‑5 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:7567482‑M2/36‑5 (MQ=255)
   atACACTAAAACCGTAATTTGACAGCCTCACCCaaa                                 <  1:7612109/36‑1 (MQ=2)
    tACGCTAAATCAGTAAGTTGGCAGCATCACCCAAat                                <  1:6068814/36‑1 (MQ=255)
    tACACTAAATCAGTAAGTTGGCAGCATCACCcaaac                                >  1:1071359‑M2/1‑31 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              >  1:4766599‑M2/1‑29 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              <  1:1974560‑M2/36‑8 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              >  1:1301525‑M2/1‑29 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc                              >  1:2566308‑M2/1‑29 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCcaaacgcgc                            <  1:6115669‑M2/36‑10 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca                           >  1:4044959‑M2/1‑26 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca                           <  1:4010806‑M2/36‑11 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca                           <  1:3955454‑M2/36‑11 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCCAAATATCCt                           <  1:2701379/36‑1 (MQ=255)
          aaaTCAGTAAGTTGGCAGCATCACCcaaacgcgcat                          <  1:4400150‑M2/36‑12 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc                         <  1:5472432‑M2/36‑13 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc                         >  1:2077964‑M2/1‑24 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCCAAATATCCTtg                         <  1:2426285/36‑1 (MQ=255)
            aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca                        <  1:74091‑M2/36‑14 (MQ=255)
            aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca                        >  1:1321356‑M2/1‑23 (MQ=255)
              cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg                      <  1:3159885‑M2/36‑16 (MQ=255)
              cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg                      >  1:3892727‑M2/1‑21 (MQ=255)
               aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt                     <  1:4906011‑M2/36‑17 (MQ=255)
               aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt                     <  1:2467166‑M2/36‑17 (MQ=255)
               aGTAAGTTGGCAGCATCACCCAAATATCCTTGTGat                     <  1:6853650/36‑1 (MQ=255)
                gTAAGTTGGCAGCATCACCgaaacgcgcatcaggtg                    >  1:2759949‑M2/1‑19 (MQ=255)
                gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg                    <  1:4690790‑M2/36‑18 (MQ=255)
                gTAAGTTGGCAGCATCACCCAAATATCCTTGTGata                    <  1:932756/36‑1 (MQ=255)
                gTAAGTTGGCAGCATCACCCAAATATCCTTGTGata                    <  1:3375425/36‑1 (MQ=255)
                 tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc                   <  1:2189957‑M2/36‑19 (MQ=255)
                  aaGTTGGCAGCATCACCcaaacgcgcatcaggtgca                  >  1:6746416‑M2/1‑17 (MQ=255)
                  aaGTTGGCAGCATCACCCAAATATCCTTGTGataat                  <  1:6697399/36‑1 (MQ=255)
                  aaGTTGGCAGCATCACCCAAATATCCTTGTGataat                  >  1:4750774/1‑36 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa                 <  1:1520159‑M2/36‑21 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa                 <  1:1380728‑M2/36‑21 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa                 <  1:6783772‑M2/36‑21 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa                 >  1:6426746‑M2/1‑16 (MQ=255)
                    gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac                >  1:1690125‑M2/1‑15 (MQ=255)
                     ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca               <  1:410424‑M2/36‑23 (MQ=255)
                      tGGCAGCATCACCcaaacgcgcatcaggtgcaacat              <  1:1947148‑M2/36‑24 (MQ=255)
                      tGGCAGCATCACCcaaacgcgcatcaggtgcaacat              <  1:2907091‑M2/36‑24 (MQ=255)
                      tGGCAGCATCACCCAAATATCCTTGTGATAAtattt              <  1:6128950/36‑1 (MQ=255)
                       ggCAGCATCACCcaaacgcgcatcaggtgcaacata             <  1:1690029‑M2/36‑25 (MQ=255)
                       ggCAGCATCACCCAAATATCCTTGTGATAAtattta             <  1:7063171/36‑1 (MQ=255)
                        gcagcaTCACCcaaacgcgcatcaggtgcaacatac            >  1:5500129‑M2/1‑11 (MQ=255)
                        gcagcaTCACCcaaacgcgcatcaggtgcaacatac            >  1:1372197‑M2/1‑11 (MQ=255)
                         cagcaTCACCcaaccgcgcatcaggtgcaacataca           <  1:5905090‑M2/36‑27 (MQ=255)
                         cagcaTCACCcaaacgcgcatcaggtgcaacataca           >  1:929313‑M2/1‑10 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         <  1:4983379‑M2/36‑29 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         <  1:5995560‑M2/36‑29 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         >  1:6303298‑M2/1‑8 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         >  1:2940324‑M2/1‑8 (MQ=255)
                           gcaTCACCCAAATATCCTTGTGATAATATTtattat         >  1:5747951/1‑36 (MQ=255)
                            caTCACCcaaacgcgcatcaggtgcaacatacatta        >  1:2280401‑M2/1‑7 (MQ=255)
                             aTCACCCAAATATCCTTGTGATAATATTTATTATaa       <  1:5603390/36‑1 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      <  1:6749529‑M2/36‑32 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      >  1:4750557‑M2/1‑5 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      <  1:7753631‑M2/36‑32 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     <  1:2763463‑M2/36‑33 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     <  1:5388516‑M2/36‑33 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     >  1:5523639‑M2/1‑4 (MQ=255)
                                aCCcaaacgcgcatcaggtgcaacatacattaataa    >  1:6333627‑M2/1‑3 (MQ=255)
                                aCCcaaacgcgcatcaggtgcaacatacattaataa    >  1:3052510‑M2/1‑3 (MQ=255)
                                aCCcaaacgcgcatcaggtgcaacatacattaataa    <  1:4359470‑M2/36‑34 (MQ=255)
                                  ccaaacgcgcatcaggtgcaacatacattaataaat  >  1:7494102‑M2/1‑1 (MQ=255)
                                  |                                   
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG