Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,014,308 | G→T | 33.3% | E297* (GAA→TAA) | ECB_02815 → | Capsule polysaccharide export inner‑membrane protein kpsE |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,014,308 | 0 | G→T | 33.3% | 6.1 ‑4.6 0.0 | 12 | 889 | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (1/7): total (5/7) | ||||||||||
Fisher's exact test strand distribution p-value = 1.01e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGGGTGACAAGCTAAACCGTATGGCGGTGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAACACC > REL606/3014273‑3014340
|
aGGGTGACAAGCTAAACCGTATGGCGGTGGATTTTg < 1:3101928/36‑1 (MQ=255)
aCAAGCTAAACCGTATGGCGGTGGGTTTTTTAGaaa > 1:6806691/1‑36 (MQ=37)
aCAAGCTAAACCGTATGGCGGTGGATTTTTAAGaaa > 1:413170/1‑36 (MQ=255)
aaGCTAAACCGTATGGCGGTGGATTTTGAAGaaatc < 1:1341003/36‑1 (MQ=255)
aGCTAAACCGTATGGCGGTGGATTTTGAAGaaatca < 1:1881705/36‑1 (MQ=255)
aaaCCGTATGGCGGTGGATTTTGAAGaaatcaaatc < 1:2124405/36‑1 (MQ=255)
aaCCGTATGGCGGTGGATTTTGAAGAaatcaaatca < 1:6700235/36‑1 (MQ=255)
aCCGTATGGCGGTGGGTTTTTAAGAAataaaatcaa > 1:1404639/1‑36 (MQ=25)
ccGTATGGCGGTGGATTTTTAAGAAAtcaaatcaaa > 1:7558724/1‑36 (MQ=255)
ggTGGATTTTGAAGAAATCAAATCAAAAGTAGAGtt < 1:846310/36‑1 (MQ=255)
ggTGGATTTTGAAGAAATCAAATCAAAAGTAGAGtg < 1:961991/36‑2 (MQ=255)
ggATTTTGAAGAAATCAAATCAAAAGTAGAGTTCaa > 1:8350930/1‑36 (MQ=255)
tttGAAGAAATCAAATCAAAAGTAGAGTTCAACAcc < 1:2279738/36‑1 (MQ=255)
|
AGGGTGACAAGCTAAACCGTATGGCGGTGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAACACC > REL606/3014273‑3014340
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
|