New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 353057740 (0.740)11 (0.200) 5/62 NT 24.2% intergenic (‑234/+37) livJ/rpoH leucine/isoleucine/valine transporter subunit/RNA polymerase sigma factor
?REL606 4043869 = 29 (0.480)coding (155/1404 nt) yihO predited transporter

TTGATTATTGTAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAA  >  REL606/3530542‑3530612
                                   |                                   
ttGATTATTGTAGAGGCCCAAAAAACAAAAACCCCG                                     <  1:6444782‑M1/36‑1 (MQ=255)
 tGATTATTGTAGAGGCCCAAAAAACAAAAACCCCgg                                    <  1:6350018/36‑1 (MQ=255)
 tGATTATTGTAGAGGCCCAAAAAACAAAAACCCCgg                                    <  1:360353/36‑1 (MQ=255)
    ttattGTAGATGCCCAAAAAACAAAAACCCCGGAct                                 <  1:4991497/36‑1 (MQ=255)
    ttattGTAGAGGCCCAAAAAACAAAAACCCCGGAct                                 >  1:2972935/1‑36 (MQ=255)
     tattGTAGAGGCCCAAAAAACAAAAACCCCGGActc                                >  1:6835040/1‑36 (MQ=255)
     tattGTAGAGGCCCAAAAAACAAAAACCCCGGActc                                >  1:4365194/1‑36 (MQ=255)
      attGTAGAGGCACAAAAAACAAAAACCCCGGActct                               <  1:7790151/36‑1 (MQ=255)
      attGTAGAAGCCCAAAAAACAACAACCCCGGActct                               <  1:1753288/36‑1 (MQ=37)
       ttGTAGAGGCCCAAAAAACAAAAACCCCGGACtctc                              >  1:5283246/1‑36 (MQ=255)
       ttGTAGAGGCCCAAAAAACAAAAACCCCGGACtctc                              >  1:5277188/1‑36 (MQ=255)
       ttGTAGAGGCCCAAAAAACAAAAACCCCGGACtctc                              >  1:4116957/1‑36 (MQ=255)
         gTAGAGCCTCAAAAAACAAAAACCCCGGACTCTCAt                            <  1:2470863/36‑1 (MQ=37)
          tAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATc                           >  1:935857/1‑36 (MQ=255)
           agagGCCCAAAAAACAAAAACCCCGGACTCTCATcc                          <  1:4731779/36‑1 (MQ=255)
           agagGCCCAAAAAACAAAAACCCCGGACTCTCATcc                          <  1:1373754/36‑1 (MQ=255)
           agagGCACAAAAAACAAAAACCCCGGACTCTCATcc                          <  1:1369121/36‑1 (MQ=255)
             agGCACAAAAAACAAAAACCCCGGACTCTCATCCAg                        <  1:3811199/36‑1 (MQ=255)
               gCCCAAAAAACATAAACCCCGGACTCTCATCCAggg                      >  1:25971/1‑36 (MQ=255)
               gCCCAAAAAACAAAAACCCCGGACTTTCATCCAggg                      >  1:3764557/1‑36 (MQ=255)
               gCCCAAAAAACAAAAACCCCGGACTCTCATCCAggg                      <  1:2359336/36‑1 (MQ=255)
                cccAAAAAACAAAAACCCCGGACTCTCATCCAGGGt                     <  1:2310339/36‑1 (MQ=255)
                 ccAAAAAACAAAAACCCCGGACTCTCATCCAGGGtt                    >  1:945491/1‑36 (MQ=255)
                  cAAAAAACAAAAACCCCTGACTCTCATCCAGGGTtc                   <  1:2487265/36‑1 (MQ=255)
                  cAAAAAACAAAAACCCCGGACTCTCATCCAGGGTtc                   >  1:4871433/1‑36 (MQ=255)
                  cAAAAAACAAAAACCCCGGACTCTCATCCAGGGTtc                   <  1:4428360/36‑1 (MQ=255)
                   aaaaaaCAAAAACCCCGGACTCTCATCCAGGGTtct                  >  1:6860922/1‑36 (MQ=255)
                   aaaaaaCAAAAACCCCGGACTCTCATCCAGGGTtct                  >  1:738575/1‑36 (MQ=255)
                   aaaaaaAAAAAACCCCGccatagtaagctggcatcc                  <  1:3197822‑M1/36‑20 (MQ=255)
                    aaaaacaaaaacCCCGGACTCTCATCCAGGGTtctc                 >  1:2927903/1‑36 (MQ=255)
                    aaaaacaaaaacCCCAGACTCTCATCCAGGGTtctc                 >  1:5478440/1‑36 (MQ=255)
                    aaaaaaaaaaacCCCGccatagtaagctggcatccc                 <  1:3327086‑M1/36‑21 (MQ=255)
                     aaaacaaaaacCCCGGACTCTCATCCAGGGTTctct                >  1:6792705/1‑36 (MQ=255)
                      aaaaaaaaacCCCGccatagtaagctggcatcccta               <  1:261386‑M1/36‑23 (MQ=255)
                       aacaaaaacCCCGGACTCTCATCCAGGGTTCTCTGc              >  1:817139/1‑36 (MQ=255)
                       aacaaaaacCCCGGACTCTCATCCAGGGTTCTCTGc              >  1:2144786/1‑36 (MQ=255)
                        acaaaaacCCCGGACTCTCATCCAGGGTTCTCTGCt             <  1:3752430/36‑1 (MQ=255)
                        aagaaaaccccGccatagtaagctggcatccctaat             <  1:5406954‑M1/33‑25 (MQ=255)
                        aaaaaaacccCGccatagtaagctggcatccctaat             <  1:4004751‑M1/34‑25 (MQ=255)
                         caaaaacCCCGGACTCTCATCCAGGGTTCTCTGCtt            >  1:4127612/1‑36 (MQ=255)
                         caaaaacCCCGGACTCNCATNNNNGGTTCTCTGCtt            <  1:1116888/36‑1 (MQ=255)
                         agaaaacccCGccatagtaagctggcatccctaatt            <  1:21589‑M1/34‑26 (MQ=255)
                         aaaaaaccCCGccatagtaagctggcatccctaatt            <  1:7506033‑M1/35‑26 (MQ=255)
                          aataaccccGccatagtaagctggcatccctaattc           <  1:7573847‑M1/33‑27 (MQ=255)
                          aaaaacCCCGGACTCTCATCCAGGGTTCTCTGCTTa           >  1:816495/1‑36 (MQ=255)
                          aaaaacCCCGGACTCTCATCCAGGGTTCTCTGCTTa           >  1:7092027/1‑36 (MQ=255)
                           aaaacCCCGGACTCTCATCCAGGGTTCTCTGCTTaa          >  1:5635609/1‑36 (MQ=255)
                            aaacCCCGGACTCTCATCCAGGGTTCTATGCTTAAt         >  1:1432176/1‑36 (MQ=255)
                             aacCCCGGACTCTCATCCAGGGTTCTCTGCTTAATa        >  1:4985696/1‑36 (MQ=255)
                              acCCCGccatagtaagctggcatccctaattcatcg       <  1:3960744‑M1/36‑31 (MQ=255)
                               ccccGccatagtaagctggcatccctaattcatcgg      <  1:1093881‑M1/36‑32 (MQ=255)
                               ccccGccatagtaagctggcatccctaattcatcgg      <  1:1815221‑M1/36‑32 (MQ=255)
                                cccGccatagtaagctggcatccctaattcatcggt     <  1:6372836‑M1/36‑33 (MQ=255)
                                 ccGccatagtaagctggcctccctaattcatcggta    <  1:5356980‑M1/36‑34 (MQ=255)
                                 ccGccatagtaagctggcatccctaattcatcggta    <  1:2022555‑M1/36‑34 (MQ=255)
                                 ccGGACTCTCATCCAGGGTTCTCTGCTTAATAGCgg    <  1:6773325/36‑1 (MQ=255)
                                 ccGGACTCTCATCCAGGGTTCTCTGCTTAATAGCgg    <  1:5960788/36‑1 (MQ=255)
                                  cGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGa   <  1:5684669/36‑1 (MQ=255)
                                   ggACTCTCATCCAGGGTTCTCTGCTTAATAGCGGaa  <  1:5692118/36‑1 (MQ=255)
                                   gccatagtaagctggcatccctaattcatcggtata  <  1:1715871‑M1/36‑36 (MQ=255)
                                   gccatagtaagctggcatccctaattcatcggtata  <  1:7062476‑M1/36‑36 (MQ=255)
                                   gccatagtaagctggcatccctaattcatcggtata  <  1:262230‑M1/36‑36 (MQ=255)
                                   gccatagtaagctggcatccctaattcatcggtata  <  1:4865225‑M1/36‑36 (MQ=255)
                                   |                                   
TTGATTATTGTAGAGGCCCAAAAAACAAAAACCCCGGACTCTCATCCAGGGTTCTCTGCTTAATAGCGGAA  >  REL606/3530542‑3530612

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG