Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,893,550 | 1 | .→G | 2.9% | 3.4 0.0 ‑0.0 | 68 | intergenic (+5/‑51) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/1): ref base (36/30): total (37/31) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.45e-01 |
TATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
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tATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..a < 1:1399784/36‑1 (MQ=255)
tATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..a < 1:7858509/36‑1 (MQ=255)
tATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..a > 1:4229704/1‑36 (MQ=255)
tATCGAACTGGGTACTAAGGTGGAAATCTAACGCC..a < 1:2905189/36‑1 (MQ=37)
tCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A.Ga > 1:1958164/1‑36 (MQ=255)
cGAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GAc < 1:6381399/36‑1 (MQ=255)
cGAAATGGGTACTCAGGTCGAAATCTAACGCC..A.GAc < 1:995003/36‑1 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GACt < 1:3955179/36‑1 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GACt > 1:2630911/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GACt > 1:6626071/1‑36 (MQ=255)
aaCTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTg > 1:2296416/1‑36 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCC..A.GTCTGt > 1:7015075/1‑36 (MQ=255)
aCTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGt > 1:4615689/1‑36 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGTa > 1:566343/1‑36 (MQ=255)
cTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGTa > 1:195489/1‑36 (MQ=255)
tGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGTAc > 1:7931614/1‑36 (MQ=255)
gggTACTCAGGTCGAAATCTAACGCC..A.GACTGTACt < 1:6771291/36‑1 (MQ=255)
gggTACTCAGGTCGAAATCTAACGCC..A.GACTGTACt > 1:4274898/1‑36 (MQ=255)
ggTACTCAGGTCGAAATCTAACGCC..A.GACTGTACTg > 1:683973/1‑36 (MQ=255)
gTACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGc < 1:5637108/36‑1 (MQ=255)
tACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCa < 1:4845119/36‑1 (MQ=255)
tACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCa < 1:2899220/36‑1 (MQ=255)
tACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCa > 1:7536128/1‑36 (MQ=255)
tACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCa < 1:3531016/36‑1 (MQ=255)
cTCAGGTCGAAATCTAACGCC..AGGACTGTACTGCAc > 1:4180558/1‑36 (MQ=37)
cTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAcc > 1:7228953/1‑36 (MQ=255)
cTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAcc < 1:4551900/36‑1 (MQ=255)
cTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAcc < 1:4227202/36‑1 (MQ=255)
tCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAccc > 1:6493059/1‑36 (MQ=255)
tCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAccc < 1:911864/36‑1 (MQ=255)
tCAGGTCGAAATCTAACGCC..A.GACTGTACTGCAccc > 1:857247/1‑36 (MQ=255)
cAGGTCGAAATCTAACGCC..A.GACTGTACTGCACCCa < 1:557977/36‑1 (MQ=255)
cAGGTCGAAATCTAACGCC..A.GACTGTACTGCACCCa > 1:1499139/1‑36 (MQ=255)
aGGTCGAAATCTAACGCC..A.GACTGTACTGCACCCAt > 1:7260045/1‑36 (MQ=255)
ggTCGAAATCTAACGCC..A.GACTGTACTGCACCCAtt > 1:6636625/1‑36 (MQ=255)
ggTCGAAATCTAACGCC..A.GACTGTACTGCACCCAtt > 1:2554023/1‑36 (MQ=255)
ggTCGAAATCTAACGCC..A.GACTGTAATGCACCCAtt > 1:5643756/1‑36 (MQ=255)
gTCGAAATCTAACGCC..A.GACTGTACTGCACCCAttt < 1:4135152/36‑1 (MQ=255)
tCGAAATCTAACGCC..A.GACTGTACTGCACCCAtttt < 1:1279144/36‑1 (MQ=255)
cGAAATCTAACGCC..A.GACTGTACTGCACCCATTttg < 1:5255568/36‑1 (MQ=255)
gAAATCTAACGCC..A.GACTGTACTGCACCCATTttgt > 1:6547010/1‑36 (MQ=255)
aaaTCTAACGCC..A.GACTGTACTGCACCCATTttgtt < 1:4035746/36‑1 (MQ=255)
aaaTCTAACGCC..A.GACTGTACTGCACCCATTttgtt > 1:892995/1‑36 (MQ=255)
aaaTCTAACGCC..A.GACTGTACTGCACCCATTttgtt > 1:235420/1‑36 (MQ=255)
aaTCTAACTCCAGA.GACTGTACTGCACCCATTttgt < 1:3466641/36‑1 (MQ=9)
aaTCTAACGCC..A.GACTGTACTGCACCCATTttgttg > 1:1128868/1‑36 (MQ=255)
aaTCTAACGCC..A.GACTGTACTGCACCCATTttgttg > 1:5608419/1‑36 (MQ=255)
aaTCTAACGCC..A.GACGGTACTGCACCCATTttgttg > 1:3317989/1‑36 (MQ=255)
aTCTAACGCC..A.GACTGTACTGCACCCATTTTGTTgg < 1:936209/36‑1 (MQ=255)
tCTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGa < 1:3035435/36‑1 (MQ=255)
tCTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGa < 1:2422605/36‑1 (MQ=255)
tCTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGa < 1:3358139/36‑1 (MQ=255)
cTACCGCC..A.GCCTGTACTGCTCCCATTTTGTTGGAc < 1:1687327/36‑1 (MQ=14)
cTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGAc < 1:5900857/36‑1 (MQ=255)
cTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGAc < 1:7114689/36‑1 (MQ=255)
tAACGCC..AGGACTGTACTGCACCCATTTTGTTGGAc < 1:2012501/36‑1 (MQ=17)
tAACGCC..A.GACTGTACTGCACCCATTTTGTTGGACg < 1:410175/36‑1 (MQ=255)
tAACGCC..A.GACTGTACTGCACCCATTTTGTTGGACg > 1:1631237/1‑36 (MQ=255)
aCGCC..A.GACTGTACTGCACCCATTTTGTTGGACGAt < 1:3230473/36‑1 (MQ=255)
aCGCC..A.GACTGTACTGCACCCATTTTGTTGGACGAt < 1:3075874/36‑1 (MQ=255)
aCGCC..A.GACTGTACTGCACCCAGTTTGTTGGACGAt > 1:2546061/1‑36 (MQ=255)
cGCC..A.GACTGTACTGCACCCATTTTGTTGGACGATg < 1:3459193/36‑1 (MQ=255)
cGCC..A.GACTGTACTGCACCCATTTTGTTGGACGATg < 1:3443427/36‑1 (MQ=255)
gCC..A.GACTGTACTGCCCCCATTTTGTTGGACGATGa < 1:3925552/36‑1 (MQ=255)
gCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:232430/1‑36 (MQ=255)
gCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:3816814/1‑36 (MQ=255)
gCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:7514632/1‑36 (MQ=255)
gCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGa > 1:1457962/1‑36 (MQ=255)
cc..A.GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:1572307/1‑36 (MQ=255)
cc..A.GACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:4827012/1‑36 (MQ=255)
c..A.GACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:4326197/1‑36 (MQ=40)
c..A.GACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:3692102/1‑36 (MQ=40)
a.GACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:7890095/36‑1 (MQ=38)
a.GACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:6117298/36‑1 (MQ=38)
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TATCGAACTGGGTACTCAGGTCGAAATCTAACGCC..A.GACTGTACTGCACCCATTTTGTTGGACGATGAAAT > REL606/3893515‑3893585
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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