Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 196,338 | A→T | 12.8% | intergenic (+67/‑25) | frr → / → ispC | ribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 196,338 | 0 | A→T | 12.8% | 2.2 ‑3.3 ‑0.0 | 30 | intergenic (+67/‑25) | frr/ispC | ribosome releasing factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (10/16): total (14/16) | ||||||||||
Fisher's exact test strand distribution p-value = 3.65e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.60e-01 |
TCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAAC > REL606/196304‑196372
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tCCTTGCGGATCGGCTGGGGGGGTTTTTTTTTTTAt > 1:128563/1‑36 (MQ=19)
tCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTAt < 1:5647255/36‑1 (MQ=255)
ccTTGCGGATCGGCTGGGGGGGTTTTTCTTTTTTtt > 1:3003526/1‑36 (MQ=16)
cTTGCGGATCGGCTGGCGGCGTTTTTCTTTTTTttt > 1:2448777/1‑35 (MQ=25)
atGCGGATCTGCTGTCGGCGTTTTGCTTTTTATTCt < 1:898218/35‑1 (MQ=25)
tGCGGATCGGCTGGCGGCGTTTTTTTTTTTTttttt > 1:4684570/1‑33 (MQ=16)
tGCGGATCGGCTGGCGGCGTTTTGTTTTTTTttttt > 1:6115840/1‑33 (MQ=21)
cGGATCGGGTGGCGGCGTTTTGCTTTTTATTCTGtc > 1:4128091/1‑36 (MQ=255)
gATCGGCTGGCGGCGTTTTGCTTTTTATTCTGtctc < 1:2922398/36‑1 (MQ=255)
aTCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCa < 1:5518501/36‑1 (MQ=255)
ggCTGGCGGCGTTTTGCTTTTTATTCTTTCTCAAct > 1:1692392/1‑36 (MQ=255)
ggCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAAct > 1:685626/1‑36 (MQ=255)
cTGGCGGCGTTTTGCTTTTTATTCTGTCTCAActct < 1:2010475/36‑1 (MQ=255)
ggcggcGTTTTGCTTTTTATTCTGTCTCAACTCTgg < 1:1410385/36‑1 (MQ=255)
cggcgTTTTGCTTTTTATTCTGTCTCAACTCTGGAt < 1:5570444/36‑1 (MQ=255)
cggcgTTTTGCTTTTTATTCTGTCTCAACTCTGGAt > 1:6045157/1‑36 (MQ=255)
cggcgTTTTGCTTTTTATTCTGTCTCAACTCTGGAt < 1:220676/36‑1 (MQ=255)
ttttGCTTTTTATTCTTTCTCAACTCTGGATGTTTc > 1:1947500/1‑36 (MQ=255)
tttGCTTTTTATTCTGTCTCAACTCTGGATGTTTCa > 1:5200119/1‑36 (MQ=255)
tttGCTTTTTATTCTGTCTCAACTCTGGATGTTTCa < 1:6265771/36‑1 (MQ=255)
ttGCTTTTTATTCTGTCTCAACTCTGGGTGTTTCAt < 1:4337612/36‑1 (MQ=255)
ttGCTTTTTATTCTGTCTCAACTCTGGATGTTTCAt > 1:5689887/1‑36 (MQ=255)
cTTTTTATTCTGTCTCAACTCTGGATGTTTCATGaa < 1:4467510/36‑1 (MQ=255)
cTTTTTATTCTGTCTCAACTCTGGATGTTTCATGaa < 1:2741153/36‑1 (MQ=255)
cTTTTTATTCTGTCTCAACTCTGGATGTTTCATGaa < 1:7218079/36‑1 (MQ=255)
tttttATTCTGTCTCAACTCTGGATGTTTCATGAAg > 1:1318535/1‑36 (MQ=255)
tttttATTCTGTCTCAACTCTGGATGTTTCATGAAg > 1:874166/1‑36 (MQ=255)
ttttATTCTGTCTCAACTCTGGATGTTTCATGAAGc < 1:5586507/36‑1 (MQ=255)
ttttATTCTGTCTCAACTCTGGATGTTTCATGAAGc < 1:2818330/36‑1 (MQ=255)
tATTCTGTCTCAACTCTGGATGTTTCATGAAGCAAc < 1:5672715/36‑1 (MQ=255)
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TCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAAC > REL606/196304‑196372
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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