New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2448493 =23 (0.420)15 (0.270) 3/64 NT 39.5% intergenic (+24/+26) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region

CTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCC...................................  <  REL606/2448526‑2448493
..................................CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA  <  REL606/2774196‑2774159
                                                                        
                 AAAAACCGGGGAATTATCCCATAAGCGCTAACTTAA                     >  1:79624/1‑36 (MQ=1)
                 AAAAACCGGGGAATTATCCCATAAGCGCTAACTTAA                     >  1:891755/1‑36 (MQ=1)
                  AAAACCGGGGAATTATCCCATAAGCGCTAACTTAAG                    >  1:5452716/1‑36 (MQ=1)
                        GGGGAATTATCCCATAAGCGCTAACTTAAGGGTTGA              <  1:1316355/36‑1 (MQ=32)
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG      <  1:1091181/36‑1 (MQ=255)
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG      <  1:2053423/36‑1 (MQ=255)
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG      <  1:3454589/36‑1 (MQ=255)
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG      >  1:4705316/1‑36 (MQ=255)
                                ATCCCATAAGCGCTAACTTAAGGGTTGAACCATATG      >  1:2155472/1‑36 (MQ=255)
                                ATCCCATAAGCGCNAACTTAAGGGTTGAACCATNNG      >  1:2071339/1‑36 (MQ=255)
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA     >  1:1080774/1‑36 (MQ=255)
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA     <  1:4832192/36‑1 (MQ=255)
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA     >  1:5183058/1‑36 (MQ=255)
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA     >  1:6667605/1‑36 (MQ=255)
                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA     <  1:6824994/36‑1 (MQ=255)
                                                                        
CTGATTAACAGGCGTAAAAAAACCGGGGAATTATCCC...................................  <  REL606/2448526‑2448493
..................................CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA  <  REL606/2774196‑2774159

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG