Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,311,831 | G→T | 10.9% | R52R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,311,831 | 0 | G→T | 10.9% | 2.2 ‑4.5 0.0 | 77 | 156 | basS | sensory histidine kinase in two‑component regulatory system with BasR |
Reads supporting (aligned to +/- strand): new base (10/0): ref base (38/28): total (49/28) | ||||||||||
Fisher's exact test strand distribution p-value = 1.09e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGCGGATCTCACGCATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGAAT > REL606/4311797‑4311866
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cgcgGATCTCACGCATGATGTGGCGATCGTTGTTGc < 1:7053433/36‑1 (MQ=255)
cgcgGATCTCACGCATGATGTGGCGATCGTTGTTGc > 1:5544816/1‑36 (MQ=255)
gcgGATCTCACGCATGATGTGGCGATCGTTGTTGCg > 1:7360403/1‑36 (MQ=255)
gcgGATCTCACGCATGATGTGGCGATCGTTGTTGCg > 1:7734266/1‑36 (MQ=255)
gcgGATCTCACGCATGATGTGGCGATCGTTGTTGCg > 1:1299115/1‑36 (MQ=255)
gcgGATCTCACGCATGATGTGGCGATCGTTGTTGCg > 1:7233784/1‑36 (MQ=255)
cgGATCTCACGCATGATGTGGCGATTGCTGTTGCGa > 1:5379820/1‑36 (MQ=25)
cgGATCTCACGCATGATGTGGCGATCGTTGTTGCGa > 1:3061467/1‑36 (MQ=255)
ggATCTCACGCATGATGTGGCGATCGTTGTTGCGAt < 1:511994/36‑1 (MQ=255)
ggATCTCACGCATGATGTGGCGATCGTTGTTGCGAt < 1:585300/36‑1 (MQ=255)
tttctcACGCGGGATGTGGCGATCGTTGTTGCGAtt < 1:5411034/34‑1 (MQ=37)
gttctcACTTATGATGTGGCGGTCGTTGTTGCTAtt < 1:2167943/34‑1 (MQ=16)
gATCTCACGCATGATGTGGCGATCGTTGTTGCGAtt < 1:7479161/36‑1 (MQ=255)
gATCTCACGCATGATGTGGCGATCGTTGTTGCGAtt > 1:2715029/1‑36 (MQ=255)
gATCTCACGCATGATGTGGCGATCGTTGTTGCGAtt < 1:6702080/36‑1 (MQ=255)
gATCTCACGCATGATCTGGCGACCGTCGTTTGGAtt > 1:5593773/1‑36 (MQ=12)
aTCTCACGCATGATGTGGCGATCGTTTTTTCGGttt > 1:2062796/1‑35 (MQ=25)
tctcACGCATGATGTGGCGATCTTTGTTTCGTtttt > 1:4617558/1‑34 (MQ=25)
tctcACGCATGATGTGGCGATCTTTGTTTCGATTGt > 1:3314676/1‑36 (MQ=38)
tctcACGCATGATGTGGCGATCGTTGTTGCGATTGt > 1:1174085/1‑36 (MQ=255)
tctcACGCATGATGTGGCGATCGTTGTTGCGATTGt > 1:3293626/1‑36 (MQ=255)
tctcACGCATGATGTGGCGATCGTTGTTGCGATTGt > 1:4032086/1‑36 (MQ=255)
ctcACGCATGATGTGGCGATCGTTGTTGCGATTGTc < 1:1931455/36‑1 (MQ=255)
ctcACGCATGATGTGGCGATCGTTGTTGCGATTGTc < 1:1612378/36‑1 (MQ=255)
tcACGCATGATGTGGCGATCGTTTTTTCGATTGttg > 1:3758001/1‑34 (MQ=37)
cACGCATGATGTGGCGATCGTTGTTGGGATTGTcgc > 1:787135/1‑36 (MQ=255)
cACGCATGATGTGGCGATCGTTGTTGCGATTGTcgc < 1:1469972/36‑1 (MQ=255)
aCGCATGATGTGGCGATCGTTGTTGCGATTGTcgcg < 1:4557890/36‑1 (MQ=255)
aCGCATGATGTGGCGATCGTTGTTGCGATTGTcgcg < 1:4556522/36‑1 (MQ=255)
cGCATGATGTGGCGATCGTTGTTGCGATTGTCGCGt < 1:1826748/36‑1 (MQ=255)
cGCATGATGTGGCGATCGTTGTTGCGATTGTCGCGt < 1:4088273/36‑1 (MQ=255)
gCATGATGTGGCGATCGTTTTTTCGATTTTTGCGTa > 1:5838892/1‑36 (MQ=19)
gCATGATGTGGCGATCGTTTTTACGATTGTCGCGtg > 1:7190552/1‑35 (MQ=37)
gCATGATGTGGCGATCGTTGTTGCGATTGTCGCTTa > 1:5105113/1‑36 (MQ=255)
gCATGATGTGGCGATCGTTGTTGCGATTGTCGCGTa > 1:314228/1‑36 (MQ=255)
cATGATGTGGCGATCGTTGTTTCTATTGTTGCGGAg > 1:7704998/1‑36 (MQ=16)
cATGATGTGGCGATCGTTGTTGCGATTGTCGGGTAg > 1:5965290/1‑36 (MQ=255)
cATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAg > 1:1575022/1‑36 (MQ=255)
cATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAg > 1:6276972/1‑36 (MQ=255)
cATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAg < 1:7241369/36‑1 (MQ=255)
cATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAg < 1:2433922/36‑1 (MQ=255)
atgatgTGGCGATCGTTGTTTTGCTTTTCGCGTGgc > 1:4856306/1‑36 (MQ=12)
atgatgTGGCGATCGTTGTTTCGATTTTCGCGTAgc > 1:7025729/1‑36 (MQ=37)
atgatgTGGCGATCGTTGTTGCGATTGTCGCGTAgc < 1:4440794/36‑1 (MQ=255)
tgatgTGGCGATCGTTGTTGCGATTGTCGCGTAgcg > 1:5132687/1‑36 (MQ=255)
tgatgTGGCGATCGTTGTTGCGATTGTCGCGTAgcg < 1:351125/36‑1 (MQ=255)
gatgTGGCGATCGTTGTTGTGATTTTCGCGTAgcgc > 1:3684672/1‑36 (MQ=38)
gatgTGGCGATCGTTGTTGCGATTGTCGGGTAtcgc > 1:5261371/1‑36 (MQ=37)
gatgTGGCGATCGTTGTTGCGATTGTCGCGTAgcgc < 1:6567327/36‑1 (MQ=255)
gatgTGGCGATCGTTGTTGCGATTGTCGCGTAgcgc > 1:3782297/1‑36 (MQ=255)
atgTGGCGATCGTTGTTGCGATTGTCGCGTAGCGcc > 1:4834041/1‑36 (MQ=255)
atgTGGCGATCGTTGTTGCGATTGTCGCGTAGCGcc < 1:4257060/36‑1 (MQ=255)
atgTGGCGATCGTTGTTGCGATTGTCGCGTAGCGcc > 1:1515757/1‑36 (MQ=255)
atgTGGCGATCGTTGTTGCGATTGTCGCGTAGCGcc > 1:1427340/1‑36 (MQ=255)
tgtgGCGATCGTTTTTTCGATTTTTGGGTAGCGCCt > 1:2820831/1‑36 (MQ=16)
gtgGCGATCGTTGTTGCGATTGTCGCGTAGCGCCTg < 1:1264135/36‑1 (MQ=255)
tgGCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGc > 1:5610865/1‑36 (MQ=255)
ggCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCt < 1:7636175/36‑1 (MQ=255)
gCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTc > 1:7361635/1‑36 (MQ=255)
gCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTc < 1:909669/36‑1 (MQ=255)
gCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTc < 1:1374970/36‑1 (MQ=255)
cGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCa > 1:879024/1‑36 (MQ=255)
cGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCa > 1:4388153/1‑36 (MQ=255)
cGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCa > 1:2830611/1‑36 (MQ=255)
gATCGTTGTTGCGCTTGTCGCGTAGCGCCTGCTCaa < 1:2684185/36‑1 (MQ=255)
gATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTcta > 1:1772334/1‑34 (MQ=255)
gATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCaa > 1:5833127/1‑36 (MQ=255)
gATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCaa < 1:5043993/36‑1 (MQ=255)
aTCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCaaa < 1:6343886/36‑1 (MQ=255)
tCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAAc < 1:5753582/36‑1 (MQ=255)
tCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAAc > 1:136544/1‑36 (MQ=255)
cGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAACa > 1:1016097/1‑36 (MQ=255)
cGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAACa > 1:4798774/1‑36 (MQ=255)
gttgttGCGATTGTCGCGTAGCGCCTGCTCAAACAg > 1:1004625/1‑36 (MQ=255)
gttgttGCGATTGTCGCGTAGCGCCTGCTCAAACAg > 1:4231645/1‑36 (MQ=255)
gttgttGCGATTGTCGCGTAGCGCCTGCTCAAACAg > 1:6238921/1‑36 (MQ=255)
gttgttGCGATTGTCGCGTAGCGCCTGCTCAAACAg > 1:5744494/1‑36 (MQ=255)
ttgttgCGATTGTCGCGTAGCGCCTGCTCAAACAGc < 1:6570407/36‑1 (MQ=255)
tgttgCGATTGTCGCTTAGCGCCTGCTCAAACAGCt < 1:6729269/36‑1 (MQ=255)
gttgCGATTGTCGCGTAGCGCCTGCTCACACAGCTg > 1:1295653/1‑36 (MQ=255)
gttgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTg < 1:6128469/36‑1 (MQ=255)
ttgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGa > 1:403849/1‑36 (MQ=255)
ttgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGa > 1:2577704/1‑36 (MQ=255)
ttgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGa < 1:1816545/36‑1 (MQ=255)
ttgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGa > 1:4365190/1‑36 (MQ=255)
tgCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGaa < 1:2961086/36‑1 (MQ=255)
gCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGAAt < 1:4843850/36‑1 (MQ=255)
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CGCGGATCTCACGCATGATGTGGCGATCGTTGTTGCGATTGTCGCGTAGCGCCTGCTCAAACAGCTGAAT > REL606/4311797‑4311866
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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