Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,064,404 | +G | 5.1% | coding (743/825 nt) | ECB_02858 ← | conserved hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,064,404 | 1 | .→G | 5.1% | 4.0 ‑3.0 ‑0.6 | 39 | coding (743/825 nt) | ECB_02858 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (7/30): total (9/30) | ||||||||||
Fisher's exact test strand distribution p-value = 4.86e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.61e-01 |
CGCTATCCAGCGCCACCGGTGCATCATACGACTGGC.GGTTTTCCATATCATCCGCCACCATGTCGTCGTGT > REL606/3064369‑3064439
|
cGCTATCCAGCGCCACCGGTGCATCATACGACTGGc < 1:4230586/36‑1 (MQ=255)
cGCTATCCAGCGCCACCGGTGCATCATACGACTGGc > 1:2970898/1‑36 (MQ=255)
gCTATCCAGCGCCACCGGTGCATCATACGACTGGC.g > 1:992156/1‑36 (MQ=255)
gCTATCCAGCGCCACCGGTGCATCATACGACTGGC.g > 1:5751312/1‑36 (MQ=255)
gCTATCCAGCGCCACCGGTGCATCATACGACTGGC.g > 1:1662464/1‑36 (MQ=255)
tATCCAGCGCCACCGGTGCATCATACGACTGGC.GGt < 1:4202488/36‑1 (MQ=255)
aTCCAGCGCCACCGGTGCATCATACGACTGGC.GGtt < 1:4684259/36‑1 (MQ=255)
tCCAGCGCCACCGGTGCATCATACGACTGGC.GGttt < 1:3412433/36‑1 (MQ=255)
tCCAGCGCCACCGGTGCATCATACGACTGGC.GGttt < 1:2771377/36‑1 (MQ=255)
ccAGCGCCACCGGTGCATCATACGACTGGC.GGtttt < 1:2272945/36‑1 (MQ=255)
ccAGCGCCACCGGTGCATCATACGACTGGC.GGcttt > 1:1898373/1‑36 (MQ=255)
aGCGCCACCGGTGCATCATACGACTGGC.GGTTTTcc < 1:5442669/36‑1 (MQ=255)
gcCACCGGTGCATCATACGACTGGCGGGTTTTccta > 1:5525677/1‑34 (MQ=37)
gcCACCGGTGCATCATACGACTGGC.GGTTTTCCata < 1:3777637/36‑1 (MQ=255)
ccACCGGTGCATCATACGACTGGCGGGTTTTccttt > 1:2186503/1‑33 (MQ=37)
ccACCGGTGCATCATACGACTGGC.GGTTTTCCatat < 1:2730352/36‑1 (MQ=255)
cACCGGTGCATCATACGACTGGC.GGTTTTCCATatc < 1:5040301/36‑1 (MQ=255)
cACCGGTGCATCATACGACTGGC.GGTTTTCCATatc < 1:5667937/36‑1 (MQ=255)
aCCGGTGCATCATACGTCTGGC.GGTTTTCCATatca < 1:1943566/36‑1 (MQ=255)
cGGTGCATCATACGACTGGC.GGTTTTCCATatcatc < 1:6228177/36‑1 (MQ=255)
ggTGCATCATACGACTGGC.GGTTTTTAATCTCATcc > 1:6477667/1‑36 (MQ=25)
ggTGCATCATACGACTGGC.GGGTTTTCATTTTATcc > 1:5513523/1‑36 (MQ=16)
tGCATCATACGACTGGC.GGTTTTCTCTATCATcccc > 1:948286/1‑34 (MQ=37)
tGCATCATACGACTGGC.GGTTTTCCATATCATCCGc < 1:202544/36‑1 (MQ=255)
tGCATCATACGACTGGC.GGGTTTTCATTTCATcccc > 1:125367/1‑34 (MQ=21)
catcatACGACTTGC.GGTTTTCCATATCATCCGcca > 1:467069/1‑36 (MQ=255)
catcatACGACTGGC.GGTTTTCCATATCATCCGcca < 1:1870534/36‑1 (MQ=255)
catcatACGACTGGC.GGTTTTCCATATCATCCGcca < 1:2608204/36‑1 (MQ=255)
atcatACGACAGGC.GGTTTTCCATATCATCCGccac < 1:2873910/36‑1 (MQ=255)
catACGACTGGC.GGTTTTCCATATCATCCGccacca < 1:4343314/36‑1 (MQ=255)
catACGACTGGC.GGTTTTCCATATCATCCGccacca < 1:2680784/36‑1 (MQ=255)
atACGACTGGC.GGTTTTCCATATCATCCGCCACCAt < 1:1056767/36‑1 (MQ=255)
atACGACTGGC.GGTTTTCCATATCATCCGCCACCAt < 1:1277547/36‑1 (MQ=255)
atACGACTGGC.GGTTTTCCATATCATCCGCCACCAt < 1:2776671/36‑1 (MQ=255)
tACGACTGGC.GGTTTTCCATATCATCCGCCACCATg < 1:122693/36‑1 (MQ=255)
gACTGGC.GGTTTTCCATATCATCCGCCACCATgtcg < 1:4833487/36‑1 (MQ=255)
aCTGGC.GGTTTTCCATATCATCCGCCACCATgtcgt < 1:4773743/36‑1 (MQ=255)
cTGGC.GGTTTTCCATATCATCCGCCACCATgtcgtc < 1:2077607/36‑1 (MQ=255)
cTGGC.GGTTTTCCATATCATCCGCCACCATgtcgtc < 1:2453228/36‑1 (MQ=255)
cTGGC.GGTTTTCCATATCATCCGCCACCATgtcgtc < 1:1144954/36‑1 (MQ=255)
cTGGC.GGTTTTCCATATCATCCGCCACCATgtcgtc < 1:1627670/36‑1 (MQ=255)
tGGC.GGTTTTCCATTTCATCCCCCCCCCTGtcgtcg > 1:5640510/1‑36 (MQ=19)
tGGC.GGTTTTCCATATCATCCGCCACCATGtcgtcg < 1:1535141/36‑1 (MQ=255)
ggC.GGTTTTCCATATCATCCGCNACCATGTcgtcgt < 1:4679085/36‑1 (MQ=255)
c.GGTTTTCCATATCATCCGCCACCATGTCGTCgtgt < 1:573837/36‑1 (MQ=255)
c.GGTTTTCCATATCATCCGCCACCATGTCGTCgtgt < 1:5170793/36‑1 (MQ=255)
|
CGCTATCCAGCGCCACCGGTGCATCATACGACTGGC.GGTTTTCCATATCATCCGCCACCATGTCGTCGTGT > REL606/3064369‑3064439
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|