Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp 100% intergenic (‑14/‑514) mokC ← / → nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 16972 =0 (0.000)30 (0.900) 22/52 NT 100% intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 169740 (0.000)23 (0.600) 20/60 NT 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAT  >  REL606/2775844‑2775912
                                 |                                   
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAgg                                   <  1:3402801‑M2/36‑3 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCGGTACAggt                                  >  1:4427451‑M2/1‑33 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:4759185‑M2/1‑33 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  <  1:3130921‑M2/36‑4 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:2380889‑M2/1‑33 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  <  1:4326177‑M2/36‑4 (MQ=255)
 cATTTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:2205835‑M2/1‑33 (MQ=255)
 cATCTCATCGTCCAACAAAATGGGTGCAGTACAggt                                  >  1:22947‑M2/1‑33 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 <  1:5436547‑M2/36‑5 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 <  1:4242589‑M2/36‑5 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 <  1:240448‑M2/36‑5 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 >  1:2315526‑M2/1‑32 (MQ=255)
  aTTTCATCGTCCAACAAAATGGGTGCAGTACAggtt                                 >  1:5172234‑M2/1‑32 (MQ=255)
   tttCATCGTCCAACAAAATGGGTGCAGTACAggttg                                <  1:1962010‑M2/36‑6 (MQ=255)
   tttCATCGTCCAAAAAAATGGGTGCAGTACAggttg                                <  1:4484278‑M2/36‑6 (MQ=255)
     tCATCGTCCAACACAATGGGTGCAGTACAggttgat                              >  1:826624‑M2/1‑29 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:80228‑M2/1‑29 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:410976‑M2/1‑29 (MQ=255)
     tCATCGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:4062944‑M2/1‑29 (MQ=255)
     ctatcGTCCAACAAAATGGGTGCAGTACAggttgat                              >  1:5276125‑M2/3‑29 (MQ=255)
      cATCGTCCAACAAAATGGGTGCAGTACAggttgata                             <  1:539370‑M2/36‑9 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            <  1:224989‑M2/36‑10 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            <  1:2307517‑M2/36‑10 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            <  1:187811‑M2/36‑10 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            <  1:2394444‑M2/36‑10 (MQ=255)
       aTCGTCCAACAAAATGGGTGCAGTACAggttgatag                            >  1:4507231‑M2/1‑27 (MQ=255)
        tCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGa                           <  1:5923607/36‑1 (MQ=255)
         cGTCCAACAAAATGGGTGCAGTACAGGTTGATAGaa                          <  1:3577896/36‑1 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAggttgatagtaa                         >  1:5346608‑M2/1‑24 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAggttgatagtaa                         <  1:1692704‑M2/36‑13 (MQ=255)
          gTCCAACAAAATGGGTGCAGTACAGGTTGATAGaaa                         <  1:2658367/36‑1 (MQ=255)
             caacaaAATGGGTGCAGTACAGGTTGATAGAAatat                      <  1:5391428/36‑1 (MQ=255)
             caacaaAATGGGTGCAGTACAGGTTGATAGAAatat                      <  1:5106204/36‑1 (MQ=255)
             caacaaAATGGGTGCAGTACAGGTTGATAGAAatat                      <  1:5609418/36‑1 (MQ=255)
              aacaaAATGGGTGCAGTACAggttgatagtaaaata                     <  1:4720448‑M2/36‑17 (MQ=255)
              aacaaAATGGGTGCAGTACAggttgatagtaaaata                     >  1:236244‑M2/1‑20 (MQ=255)
              aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                     >  1:517665/1‑36 (MQ=255)
              aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                     <  1:779635/36‑1 (MQ=255)
              aacaaAATGGGTGCAGTACAGGTTGATAGAAATATc                     <  1:4274959/36‑1 (MQ=255)
               acaaAATGGGTGCAGTACAggttgatagtaaaatat                    <  1:4990107‑M2/36‑18 (MQ=255)
               acaaAATGGGTGCAGTACAggttgatagtaaaatat                    >  1:673980‑M2/1‑19 (MQ=255)
               acaaAATGGGTGCAGTACAGGTTGATAGAAATATCg                    >  1:1272203/1‑36 (MQ=255)
               acaaAATGGGTGCAGTACAGGTTGATAGAAATATCg                    >  1:843382/1‑36 (MQ=255)
                caaAATGGGTGCAGTACAggttgatagtaaaatatc                   >  1:892227‑M2/1‑18 (MQ=255)
                caaAATGGGTGCAGTACAGGTTGATAGAAATATCGc                   <  1:4338413/36‑1 (MQ=255)
                 aaaaTGGGTGCAGTACAggttgatagtaaaatatca                  <  1:4602659‑M2/36‑20 (MQ=255)
                 aaaaTGGGTGCAGTACAggttgatagtaaaatatca                  <  1:4411100‑M2/36‑20 (MQ=255)
                 aaaaTGGGTGCAGTACAggtggatagtaaaatatca                  <  1:1020695‑M2/36‑20 (MQ=255)
                  aaaTGGGTGCAGTACAggttgatagtaaaatatcac                 >  1:5216610‑M2/1‑16 (MQ=255)
                  aaaTGGGTGCAGTACAggttgatagtaaaatatcac                 >  1:4876620‑M2/1‑16 (MQ=255)
                  aaaTGGGTGCAGTACAGGTTGATAGAAATATCGCCt                 >  1:5553548/1‑36 (MQ=255)
                  aaaTGGGTGCAGTACAGGGTGATAGAAATATCGCCt                 >  1:3745621/1‑36 (MQ=255)
                  aaaGGGGTGCAGTACAGGTTGATAGAAATATCGCCt                 <  1:2820067/36‑1 (MQ=255)
                   aaTGGGTGCCGTACAggttgatagtaaaatatcact                >  1:2559927‑M2/1‑15 (MQ=255)
                    aTGGGTGCAGTACAggttgatagtaaaatatcactc               >  1:3562526‑M2/1‑14 (MQ=255)
                    aTGGGTGCAGTACAggttgatagtaaaatatcactc               >  1:3283782‑M2/1‑14 (MQ=255)
                     tGGGTGCAGTACAGGTTGATAGAAATATCGCCTggg              >  1:4806533/1‑36 (MQ=255)
                      gggTGCAGTACAggttgatagtaaaatatcactcgg             >  1:2480121‑M2/1‑12 (MQ=255)
                      gggTGCAGTACAGGTTGATAGAAATATCGCCTgggg             >  1:4584630/1‑36 (MQ=255)
                       ggcgCAGTACAGGTTGATAGAAATATCGCCTGGGGc            >  1:331727/4‑36 (MQ=255)
                       ggTGCAGTACAGTTTGATAGAAATATCGCCTGGGGc            <  1:2841329/36‑1 (MQ=255)
                       ggTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc            <  1:4106926/36‑1 (MQ=255)
                       ggTGCAGTACAGGTTGATAGAAATATCGCCTGGGGc            >  1:5097756/1‑36 (MQ=255)
                        gTGCAGTACAggttgatagtaaaatatcactcgggg           <  1:379287‑M2/36‑27 (MQ=255)
                        gTGCAGTACAggttgatagtaaaatatcactcgggg           >  1:4963619‑M2/1‑10 (MQ=255)
                        gTGCAGTACAggttgatagtaaaatatcactcgggg           <  1:2178390‑M2/36‑27 (MQ=255)
                        gTGCAGTACAGGCTGATAGAAATATCGCCTGGGGCt           >  1:1014774/1‑36 (MQ=255)
                         tGCCGTACAGGTTGATAGAAATATCGCCTGGGGCtt          <  1:5747081/36‑1 (MQ=255)
                         tGCAGTACAggttgatagtaaaatatcactcggggc          >  1:2496934‑M2/1‑9 (MQ=255)
                         tGCAGTACAggttgatagtaaaatatcactcggggc          >  1:3921496‑M2/1‑9 (MQ=255)
                         tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt          >  1:759440/1‑36 (MQ=255)
                         tGCAGTACAGGTTGATAGAAATATCGCCTGGGGCtt          <  1:4404440/36‑1 (MQ=255)
                          gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt         <  1:1569840/36‑1 (MQ=255)
                          gCAGTACAGGTTGATAGAAATATCGCCTGGGGCttt         <  1:5111481/36‑1 (MQ=255)
                           cAGTACAggttgatagtaaaatatcactcggggctt        >  1:271247‑M2/1‑7 (MQ=255)
                           cAGTACAGGTTGATAGAAATATCGCCTGGGGCtttt        <  1:330719/36‑1 (MQ=255)
                              tACAggttgatagtaaaatatcactcggggcttttc     >  1:2491464‑M2/1‑4 (MQ=255)
                              tACAggttgatagtaaaatatcactcggggcttttc     <  1:4786851‑M2/36‑33 (MQ=255)
                              tACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTc     <  1:3802310/36‑1 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    >  1:5348035‑M2/1‑3 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    <  1:4236362‑M2/36‑34 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    <  1:4716616‑M2/36‑34 (MQ=255)
                               aCAggttgatagtaaaatatcactcggggcttttct    <  1:1308760‑M2/36‑34 (MQ=255)
                               aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc    <  1:1558593/36‑1 (MQ=255)
                               aCAGGTTGATAGAAATATCGCCTGGGGCTTTTGTcc    <  1:896036/36‑1 (MQ=255)
                                 aggttgatagtaaaatatcactcggggcttttctct  >  1:4429756‑M2/1‑1 (MQ=255)
                                 aggttgatagtaaaatatcactcggggcttttctct  <  1:1897642‑M2/36‑36 (MQ=255)
                                 aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAt  >  1:615073/1‑36 (MQ=255)
                                 aGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAt  <  1:1897177/36‑1 (MQ=255)
                                 |                                   
CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCAT  >  REL606/2775844‑2775912

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG