Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,871,909 | G→T | 19.4% | intergenic (‑96/‑36) | yoaA ← / → yoaB | conserved protein with nucleoside triphosphate hydrolase domain/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,871,909 | 0 | G→T | 19.4% | 2.4 ‑4.3 ‑0.0 | 39 | intergenic (‑96/‑36) | yoaA/yoaB | conserved protein with nucleoside triphosphate hydrolase domain/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (15/15): total (24/15) | ||||||||||
Fisher's exact test strand distribution p-value = 1.32e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
AGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGACAAAATG > REL606/1871874‑1871944
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aGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTg < 1:1180498/36‑1 (MQ=255)
aGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTg < 1:7924563/36‑1 (MQ=255)
aGTGGTGACGGCGACATCACATTGTGGCAGTCTTTg < 1:6174837/36‑1 (MQ=255)
gtggtgACGGCGACCTCACATTGTGGCAGTCTTTgc < 1:979924/36‑1 (MQ=255)
gtggtgACGGCGACCTCACATTGTGGCAGTCTTTgc < 1:4981037/36‑1 (MQ=255)
ggtgACGGCGACCTCACATTGTGGCAGTCTTTgcag < 1:4602939/36‑1 (MQ=255)
gtgACGGCGACCTCACATTGTGGCAGTCTTTgcagc < 1:7445728/36‑1 (MQ=255)
gACGGCGACCTCACATTGTGGCAGTCTTTCCAGCAc > 1:4691478/1‑36 (MQ=255)
aCGGCGACCTCACATTGTGGCAGTCTTTTCAGCACg > 1:147675/1‑36 (MQ=255)
ggCGACCTCACATTGTGGCAGTCTTTGCAGCACGaa < 1:3831747/36‑1 (MQ=255)
gCGACCTCACATTGTGGCAGTCTTTGCAGCACGaaa < 1:7855294/36‑1 (MQ=255)
gCGACCTCACATTGTGGCAGTCTTTGCAGCACGaaa < 1:2425017/36‑1 (MQ=255)
gCGACCTCACATTGTGGCAGTCTTTGCAGCACGaaa < 1:6984621/36‑1 (MQ=255)
cGACCTCACATTGTGGCAGTCTTTTCAGCACGaaaa > 1:1176700/1‑36 (MQ=255)
gACCTCACATTGTGGCAGTCTTTTCAGCACGGAAAt > 1:3943070/1‑36 (MQ=37)
aCCTCACATTGTGGCAGTTTTTTTAGCACGTAAAtt > 1:2301155/1‑35 (MQ=16)
aCCTCACATTGTGGCAGTCTTTTCAGCACGgaaaag > 1:4033496/1‑34 (MQ=25)
aCCTCACATTGTGGCAGTCTTTGCAGCACGAAAATg < 1:1802423/36‑1 (MQ=255)
aCCTCACATTGTGGCAGTCTTTGCAGCACGAAAATg < 1:281521/36‑1 (MQ=255)
tCACATTGTGGCAGTCTTTGCAGCACGAAAATggga > 1:4836538/1‑34 (MQ=255)
acaTTGTGGCAGTCTTTTCAGCACGAAAATGGAAgg > 1:3236453/1‑36 (MQ=255)
acaTTGTGGCAGTCTTTGCAGCACGAAAATGGGAgg > 1:4701876/1‑36 (MQ=255)
acaTTGTGGCAGTCTTTGCAGCACGAAAATGGAAgg > 1:2996348/1‑36 (MQ=255)
caTTGTGGCAGTCTTTTCAGCACGAAAATGGAAGGa > 1:564638/1‑36 (MQ=255)
caTTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGa > 1:5924360/1‑36 (MQ=255)
caTTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGa < 1:5248644/36‑1 (MQ=255)
aTTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGAt < 1:2303658/36‑1 (MQ=255)
ttGTGGCAGTCTTTTCAGCACGAAAATGGAAGGGTa > 1:2182936/1‑36 (MQ=38)
ttGTGGCAGTCTTTGCAGCACGAAAATTGAAGGATa > 1:7767875/1‑36 (MQ=255)
ttGTGGCAGTCTTTGCAGCACGAAAATGGAAGGATa < 1:4844734/36‑1 (MQ=255)
tgtgGCAGTCTTTGCAGCACGAAAATGGAAGGATaa > 1:6986856/1‑36 (MQ=255)
gtgGCAGTCTTTGCAGCACGAAAATGGAAGGATAAt > 1:1141976/1‑36 (MQ=255)
tgGCAGTCTTTGCAGCACGAAAATGGAAGGATAATg > 1:6495321/1‑36 (MQ=255)
ggCAGTCTTTGCAGCACGAAAATGGAAGGATAATGa < 1:4660119/36‑1 (MQ=255)
ggCAGTCTTTGCAGCACGAAAATGGAAGGATAATGa < 1:1639396/36‑1 (MQ=255)
gCAGTCTTTGCAGCACGAAAATGGAAGGATAATGAg > 1:5718465/1‑36 (MQ=255)
cAGTCTTTGCAGCACGAAAATGGAAGGATAATGAgg > 1:4929708/1‑36 (MQ=255)
aGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGa < 1:3689395/36‑1 (MQ=255)
gTCTTTGCAGCACGGAAATGGAAGGATAATGAGGAc > 1:5056330/1‑36 (MQ=255)
tCTTTGCAGCACGAAAATGGAAGGATAATGAGGACa < 1:5250913/36‑1 (MQ=255)
cTTTGCAGCACGAAAATTGAAGGATAATGAGGACaa < 1:1180942/36‑1 (MQ=255)
cTTTGCAGCACGAAAATGGAAGGATAATGAGGACaa > 1:5682871/1‑36 (MQ=255)
tttGCAGCACGAAAATGGAAGGATAATGAGGACaaa < 1:4996375/36‑1 (MQ=255)
tttGCAGCACGAAAATGGAAGGATAATGAGGACaaa > 1:5009241/1‑36 (MQ=255)
ttGCAGCACGAAAATGGAAGGATAATGAGGACaaaa > 1:7615853/1‑36 (MQ=255)
ttGCAGCACGAAAATGGAAGGATAATGAGGACaaaa > 1:1862871/1‑36 (MQ=255)
gcagcaCGAAAATGGAAGGATAATGAGGACAAAatg > 1:6055434/1‑36 (MQ=255)
gcagcaCGAAAATGGAAGGATAATGAGGACAAAatg > 1:7590158/1‑36 (MQ=255)
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AGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGAAGGATAATGAGGACAAAATG > REL606/1871874‑1871944
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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