New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)46 (1.090) 29/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588
                                                                        
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    >  1:874412/1‑36 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGGGACTGTCATACTG                                   >  1:4480621/1‑36 (MQ=255)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   >  1:3181125/1‑36 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   >  1:2961461/1‑36 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   >  1:5761506/1‑36 (MQ=38)
    TGCGCAACAACCGTCTTCCGGAGACTGTCATACTGT                                  >  1:1526351/1‑36 (MQ=38)
     GCGCAACAACCGTCTTCCGGAGACTGTCATACTGTA                                 <  1:2147557/36‑1 (MQ=38)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                >  1:2615723/1‑36 (MQ=38)
       GCAACAACCGTCTTCCGGAGACTGTCATACTGTACT                               >  1:4158672/1‑36 (MQ=38)
        CAACAACCGTCTTCCGGAGACTGTCATACTGTACTG                              >  1:5523885/1‑36 (MQ=38)
         AACAACCGTCTTCCGGAGACTGTCATACTGTACTGC                             <  1:3428365/36‑1 (MQ=38)
         AACAACCGTCTTCCGGAGACTGTCATACTGTACTGC                             >  1:907397/1‑36 (MQ=38)
            AACCGTCTTCCGGAGACTGTCATACTGTACTGCACC                          >  1:905475/1‑36 (MQ=38)
             ACCGTCTTCCGGAGACTGTCATACTGTACTGCACCC                         >  1:4159425/1‑36 (MQ=38)
              CCGTCTTCCGGAGACTGTCATACTGTACTGCACCCA                        >  1:2609675/1‑36 (MQ=38)
               CGTCTTCCGGAGACTGTCATACTGTACTGCACCCAT                       <  1:632496/36‑1 (MQ=38)
                GTCTTCCGGAGACTGTCATACTGTACTGCACCCATT                      <  1:2786238/36‑1 (MQ=38)
                  CTTCCGGAGACTGTCATACTGTACTGCACCCATTTT                    <  1:2568286/36‑1 (MQ=38)
                  CTTCCGGAGACTGTCATACTGTACTGCACCCATTTT                    <  1:4271802/36‑1 (MQ=38)
                    TCCGTAGACTGTCATACTGTACTGCACCCATTTTGT                  <  1:86420/36‑1 (MQ=255)
                    TCCGGAGACTGTCATACTGTACTGCACCCATTTTGT                  <  1:2080949/36‑1 (MQ=38)
                    TCCGGAGACTGTCATACTGTACTGCACCCATTTTGT                  <  1:5000481/36‑1 (MQ=38)
                     CCGGAGACTGTCATACTGTACTGCACCCATTTTGTT                 >  1:1534149/1‑36 (MQ=38)
                      CGGAGACTGTCATACTGTACTGCACCCATTTTGTTG                <  1:5628674/36‑1 (MQ=38)
                      CGGAGACTGTCATACTGTACTGCACCCATTTTGTTG                <  1:1662107/36‑1 (MQ=38)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:1032580/1‑36 (MQ=38)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:1310372/1‑36 (MQ=40)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:4035110/1‑36 (MQ=38)
                           ACTGTCATACTGTACTGCACCCATTTTGTTGGACGA           >  1:5270115/1‑36 (MQ=32)
                           ACTGTCATACTGTACTGCACCCATTTTGTTGGACGA           >  1:3540466/1‑36 (MQ=32)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:25488/36‑1 (MQ=1)
                               TCATACTGTACTGCACCCATTTTGTTGTACGATGAA       >  1:5785424/1‑36 (MQ=0)
                               TCATACTGTACTGCACCCATTTTGTTGGACGATGAA       <  1:2739590/36‑1 (MQ=1)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      <  1:3521634/36‑1 (MQ=1)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      >  1:2289054/1‑36 (MQ=1)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      <  1:3651264/36‑1 (MQ=1)
                                 ATACTTTACTGCACCCATTTTGTTGGACGATGAAAT     <  1:4889487/36‑1 (MQ=0)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     <  1:4474779/36‑1 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:465767/1‑36 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:4881937/1‑36 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:253016/1‑36 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:3944930/1‑36 (MQ=1)
                                  TACTGTACTGCACTCATTTTGTTGGACGATGAAATG    <  1:3197188/36‑1 (MQ=0)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    <  1:5086396/36‑1 (MQ=1)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:4430843/1‑36 (MQ=1)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:256090/1‑36 (MQ=1)
                                                                        
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG