Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,769,363 | G→T | 7.9% | intergenic (‑246/+171) | ydiV ← / ← nlpC | hypothetical protein/predicted lipoprotein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,769,363 | 0 | G→T | 7.9% | 2.3 ‑2.7 ‑0.0 | 38 | intergenic (‑246/+171) | ydiV/nlpC | hypothetical protein/predicted lipoprotein |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (13/22): total (16/22) | ||||||||||
Fisher's exact test strand distribution p-value = 6.64e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.51e-01 |
TAAAAGGGATGAGGCCATAAGACATAACAATTACAGAAGGAGTAACTTTCATTTGTTCCATGTTAACCACT > REL606/1769328‑1769398
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tAAAAGGGATGAGGCCATAAGACATAACAATTACAg > 1:5045110/1‑36 (MQ=255)
tAAAAGGGATGAGGCCATAAGACATAACAATTACAg > 1:3421144/1‑36 (MQ=255)
aaaGGGATGAGGCAATAAGACATAACAATTACAGaa < 1:6961199/36‑1 (MQ=255)
aGGGATGAGGCCATAAGACATAACAATTACAGAAgg > 1:5948961/1‑36 (MQ=255)
gATGAGGCCATAAGACATAACAATTACAGAAGGAGt > 1:5624273/1‑36 (MQ=255)
aTGAGGCCATAAGACATAACAATTACAGAAGGAGTa < 1:6686597/36‑1 (MQ=255)
tGAGGACATAAGACATAACAATTACAGAAGGAGTaa < 1:207538/36‑1 (MQ=255)
gAGGCCATAAGACATAACAATTACAGAAGGAGTAAc < 1:1338040/36‑1 (MQ=255)
aGGCCATAAGACATAACAATTACAGAAGGAGTAACt > 1:4007867/1‑36 (MQ=255)
aGGCCACAAGACATAACAATTACAGAAGGAGTAACt < 1:1363309/36‑1 (MQ=255)
ggCCATAAGACATAACAATTACAGAAGGAGTAACtt < 1:6735618/36‑1 (MQ=255)
ggCCATAAGACATAACAATTACAGAAGGAGTAACtt < 1:5609309/36‑1 (MQ=255)
gCCATAAGACATAACAATTACAGAAGGAGTAACttt < 1:1408070/36‑1 (MQ=255)
gCCATAAGACATAACAATTACAGAAGGAGTAACttt < 1:1502607/36‑1 (MQ=255)
aTAAGACATAACAATTACAGAAGGAGTAACTTTCAt > 1:594939/1‑36 (MQ=255)
aaGACATAACAATTACAGAAGGAGTAACTTTCAttt > 1:7235124/1‑36 (MQ=255)
aCATAACAATTACAGAAGGAGTAACTTTCATTTGtt < 1:8158934/36‑1 (MQ=255)
aCATAACAATTACAGAAGGAGTAACTTTCATTTGtt > 1:5951648/1‑36 (MQ=255)
aTAACAATTACAGAAGGAGTAACTTTCATTTGTTcc < 1:678272/36‑1 (MQ=255)
aTAACAATTACAGAAGGAGTAACTTTCATTTGTTcc < 1:34354/36‑1 (MQ=255)
tAACAATTACAGAAGGAGTAACTTTCATTTGTTCCa < 1:3387709/36‑1 (MQ=255)
tAACAATTACAGAAGGAGTAACTTTCATTTGTTCCa > 1:6604743/1‑36 (MQ=255)
aaCAATTACAGAAGGAGTAACTTTCATTTGTTCCAt < 1:5263296/36‑1 (MQ=255)
aaCAATTACAGAAGGAGTAACTTTCATTTGTTCCAt < 1:842658/36‑1 (MQ=255)
aaCAATTACAGAAGGAGTAACTTTAAATTCTTCCAt > 1:6122889/1‑36 (MQ=37)
aCAATTACAGAAGGAGTAACTTTCATTTGTTCCATg > 1:3802091/1‑36 (MQ=255)
cAATTCCAGAAGGAGTAACTTTCATTTGTTCCATGt < 1:8064564/36‑1 (MQ=255)
cAATTACAGAAGGAGTAACTTTCATTTGTTCCATGt < 1:5173619/36‑1 (MQ=255)
cAATTACAGAAGGAGTAACTTTCATTTGTTCCATGt < 1:4488040/36‑1 (MQ=255)
aaTTACAGAAGGAGT.ACTTTCATTTGTTCCATGTTa > 1:668741/1‑36 (MQ=38)
aTTACAGAAGGAGTAACTTTCATTTGTTCCATGTTa < 1:873868/36‑1 (MQ=255)
tACATAAGGAGTAACTTTCATTTGTTCCATGTTAAc > 1:5637944/1‑36 (MQ=255)
tACATAAGGAGTAACTTTCATTTGTTCCATGTTAAc > 1:8395178/1‑36 (MQ=255)
tACATAAGGAGTAACTTTCATTTGTTCCATGTTAAc > 1:4595815/1‑36 (MQ=255)
tACAGAAGGAGTAACTTTCATTTGTTCCATGTTAAc < 1:8366575/36‑1 (MQ=255)
tACAGAAGGAGTAACTTTCATTTGTTCCATGTTAAc > 1:5487900/1‑36 (MQ=255)
aCAGAAGGAGTAACTTTCATTTGTTCCATGTTAAcc < 1:352179/36‑1 (MQ=255)
aCAGAAGGAGTAACTTGCATTTGTTCCATGTTAAcc > 1:88127/1‑36 (MQ=255)
cAGAAGGAGTAACTTTCATTTGTTCCATGTTAACCa < 1:6426486/36‑1 (MQ=255)
aGAAGGAGTAACTTTCATTTGTTCCATGTTAACCAc > 1:419523/1‑36 (MQ=255)
gAAGGAGTAACTTTCATTTGTTCCATGTTAACCACt < 1:507496/36‑1 (MQ=255)
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TAAAAGGGATGAGGCCATAAGACATAACAATTACAGAAGGAGTAACTTTCATTTGTTCCATGTTAACCACT > REL606/1769328‑1769398
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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