Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,922,670 | +G | 6.7% | coding (681/786 nt) | znuB → | high‑affinity zinc transporter membrane component |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,922,670 | 1 | .→G | 6.7% | 4.1 ‑4.3 ‑0.3 | 30 | coding (681/786 nt) | znuB | high‑affinity zinc transporter membrane component |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (2/26): total (4/26) | ||||||||||
Fisher's exact test strand distribution p-value = 1.38e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.62e-01 |
TCGCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.GGTTTAACCTTTTCCGCATTTTACGATACGCCGGC > REL606/1922636‑1922705
|
tCGCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.g < 1:5925219/36‑1 (MQ=255)
tCGCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.g > 1:5640156/1‑36 (MQ=255)
tCGCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.g > 1:4613628/1‑36 (MQ=255)
atcTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.gg < 1:3836756/34‑1 (MQ=255)
gCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.ggg > 1:4774359/1‑35 (MQ=255)
gCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.GGt > 1:1524402/1‑36 (MQ=255)
gtattttGGTGGGGATGGTGGCAGTGACTGGC.GGtt < 1:759601/33‑1 (MQ=255)
cTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.gggt > 1:5068360/1‑34 (MQ=255)
tGTTTTGGTGGGGATGGTGGCAGTGACTGGC.GGttt < 1:88261/36‑1 (MQ=255)
gTTTTGGGGGGGATGGTGGCAGTGACTGGC.GGTTTa < 1:6968173/36‑1 (MQ=255)
ttttGGTGGGGATGGTGGCAGTGACTGGC.GGttaac < 1:6830980/36‑4 (MQ=255)
ttttGGTGGGGATGGTGGCAGTGACTGGC.GGTTTaa < 1:6681362/36‑1 (MQ=255)
tttGTTGGGGATGGTGGCAGTGACTGGC.GGTTTAAc < 1:2044333/36‑1 (MQ=255)
tggtggGGATGGTGGCAGTGACTGGC.GGTTTAACCt < 1:2773445/36‑1 (MQ=255)
ggtggGGATGGTGGCAGTGACTGGC.GGTTTAACCtt < 1:7071175/36‑1 (MQ=255)
ggtggGGATGGTGGCAGTGACTGGC.GGGTTTAGCtt > 1:860168/1‑36 (MQ=25)
gtggGGATGGTGGCAGTGACTGGC.GGTTTAACCttt < 1:3541210/36‑1 (MQ=255)
gggATGGTGGCAGTGACTGGC.GGTTTAACCTTTTcc < 1:2063540/36‑1 (MQ=255)
gggATGGTGGCAGTGACTGGC.GGTTTAACCTTTTcc < 1:6667316/36‑1 (MQ=255)
ggATGGTGGCAGTGACTGGC.GGTTTAACCTTTTCCg < 1:4815918/36‑1 (MQ=255)
gATGGTGGCAGTGACTGGC.GGTTTAACCTTTTCCGc < 1:6516034/36‑1 (MQ=255)
tggtggCAGTGACTGGC.GGTTTAACCTTTTCCGCAt < 1:4502335/36‑1 (MQ=255)
ggtggCAGTGACTGGC.GGTTTAACCTTTTCCGCAtt < 1:1513069/36‑1 (MQ=255)
ggCAGTGACTGGCGGGTTTAACTTTTTCCCCCtttt > 1:1027491/1‑36 (MQ=16)
ggCAGTGACTGGC.GGTTTAACCTTTTCCGCATTTTa < 1:5648437/36‑1 (MQ=255)
ggCAGTGACTGGC.GGTTTAACCTTTTCCGCATTTTa < 1:5151595/36‑1 (MQ=255)
cAGTGACTGGCGGGTTTAACCTTTTTCCCTtttttt > 1:8129978/1‑34 (MQ=12)
tGACTGGC.GGTTTAACCTTTTCCGCATTTTACGATa < 1:7861044/36‑1 (MQ=255)
gACTGGT.GGTTTAACCTTTTCCGCATTTTACGATAc < 1:948594/36‑1 (MQ=255)
gACTGGC.GGTTTAACCTTTTCCGCATTTTACGATAc < 1:4088241/36‑1 (MQ=255)
gACTGGC.GGTTTAACCTTTTCCGCATTTTACGATAc < 1:3565954/36‑1 (MQ=255)
aCTGGC.GGTTTAACCTTTTCCGCATTTTACGATACg < 1:1227475/36‑1 (MQ=255)
cTGGC.GGTTTAACCTTTTCCGCATTTTACGATACGc < 1:2815539/36‑1 (MQ=255)
tGGC.GGTTTAACCTTTTCCGCATTTTACGATACGcc < 1:5130716/36‑1 (MQ=255)
ggC.GGTTTAACCTTTTCCGCATTTTACGATACGCCg < 1:1049981/36‑1 (MQ=255)
gC.GGTTTAACCTTTTCCGCATTTTACGATACGCCgg < 1:7632461/36‑1 (MQ=255)
c.GGTTTAACCTTTTCCGCATTTTACGATACGCCGGc > 1:3108088/1‑36 (MQ=255)
|
TCGCTGTTTTGGTGGGGATGGTGGCAGTGACTGGC.GGTTTAACCTTTTCCGCATTTTACGATACGCCGGC > REL606/1922636‑1922705
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|