Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,226,688 | 0 | C→A | 13.4% | 4.9 ‑7.2 0.0 | 73 | 973 | malK | fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/12): ref base (32/29): total (32/41) | ||||||||||
Fisher's exact test strand distribution p-value = 7.30e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAACTCAAATCCATATCCAGATCCCTTCCATTCGTCAAAACCTGGTGTACCGCCAGAACGACGTGGTGTTG > REL606/4226653‑4226723
|
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc > 1:3957939/1‑36 (MQ=255)
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc < 1:314726/36‑1 (MQ=255)
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc > 1:2678005/1‑36 (MQ=255)
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc < 1:6625877/36‑1 (MQ=255)
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc > 1:887183/1‑36 (MQ=255)
aaaCTCAAATCCATATCCAGATCCCTTCCATTCGTc < 1:7821857/36‑1 (MQ=255)
aaCTCAAATCCATAGCCAGATCCCTTCCATTCGTCa < 1:2111883/36‑1 (MQ=255)
acccAAAGCCATATCCAGATCCCTTCCATTCGTCaa < 1:2581083/33‑1 (MQ=37)
aCTCAAATCCATATCCAGATCCCTTCCATTCGTCaa < 1:117350/36‑1 (MQ=255)
aCTCAAATCCATATCCAGATCCCTTCCATTCGTCaa > 1:5204751/1‑36 (MQ=255)
aCTCAAATCCATATCCAGATCCCTTCCATTCGTCaa < 1:5992252/36‑1 (MQ=255)
aCTCAAATCCATATCCAGATCCCTTCCATTCGTCaa > 1:1425627/1‑36 (MQ=255)
cTCAAATCCATATCCAGATCCCTTCCATTCGTCaaa < 1:7692868/36‑1 (MQ=255)
cTCAAATCCATATCCAGATCCCTTCCATTCGTCaaa < 1:3443886/36‑1 (MQ=255)
tCAAATCCATATCCAGATCCCTTCCATTCGTCaaaa < 1:6494459/36‑1 (MQ=255)
tCAAATCCATATCCAGATCCCTTCCATTCGTCaaaa < 1:6991073/36‑1 (MQ=255)
tCAAATCCATATCCAGATCCCTTCCATTCGTCaaaa < 1:5980728/36‑1 (MQ=255)
tCAAATCCATATCCAGATCCCTTCCATTCGTCaaaa > 1:4502672/1‑36 (MQ=255)
cAAATCCATATCCATATCCCTTCCATTCGTCaactc < 1:3946369/36‑4 (MQ=37)
cAAATCCATATCCAGATCCCTTCCATTCGTCAAAAc > 1:6432027/1‑36 (MQ=255)
cAAATCCATATCCAGATCCCTTCCATTCGTCAAAAc < 1:6888138/36‑1 (MQ=255)
cAAATCCATATCCAGATCCCTTCCATTCGTCAAAAc < 1:302758/36‑1 (MQ=255)
aaaTCCATATCCAGATCCCTTCCATTCGTCAAAAcc < 1:6707431/36‑1 (MQ=255)
aaaTCCATATCCAGATCCCTTCCATTCGTCAAAAcc < 1:3100160/36‑1 (MQ=255)
aTCCATATCCAGATCCCTTCCATTCGTCAAAACCTg < 1:3919992/36‑1 (MQ=255)
aTCCATATCCAGATCCCTTCCATTCGTCAAAACCTg > 1:4296045/1‑36 (MQ=255)
tCCATATCCAGATCCCTTCCATTCGTCAAAACCTgg < 1:4833356/36‑1 (MQ=255)
tCCATATCCAGATCCCTTCCATTCGTCAAAACCTgg < 1:1247003/36‑1 (MQ=255)
ccATATCCAGATCCCTTCCATTCGTCAAAACCTGgt > 1:2831715/1‑36 (MQ=255)
ccATATCCAGATCCCTTCCATTCGTCAAAACCTGgt > 1:2130671/1‑36 (MQ=255)
cATATCCAGATCCCTTCCATTCGTCAAAACCTGgtg < 1:721294/36‑1 (MQ=255)
cATATCCAGATCCCTTCCATTCGTCAAAACCTGgtg < 1:500182/36‑1 (MQ=255)
cATATCCAGATCCCTTCCATTCGTCAAAACCTGgtg > 1:6268045/1‑36 (MQ=255)
cATATCCAGATCCCTTCCATTCGTCAAAACCTGgtg > 1:1093876/1‑36 (MQ=255)
cATATCCAGATCCCTTCCATTCGTCAAAACCTGgtg > 1:1563298/1‑36 (MQ=255)
atatCCAGATCCCTTCCATTCGTCAAAACCTGgtgt > 1:77505/1‑36 (MQ=255)
tatCCAGATCCCTTCCATTCGTCAAAACCTGGTGTa < 1:6817127/36‑1 (MQ=255)
tatCCAGATCCCTTCCATTCGTCAAAACCTGGTGTa < 1:704566/36‑1 (MQ=255)
tatCCAGATCCCTTCCATTCGTCAAAACCTGGTGTa < 1:117693/36‑1 (MQ=255)
atCCAGATCCCTTCCATTCGTCAAAACCTGGTGTAc > 1:5206843/1‑36 (MQ=255)
atCCAGATCCCTTCCATTCGTCAAAACCTGGTGTAc > 1:7332883/1‑36 (MQ=255)
tCCAGATCCCTTCCATTCGTCAAAACCTGGTGTAcc > 1:1260235/1‑36 (MQ=255)
cAGATCCCTTCCATTCGCCAAAACCTGGTGTAcccc > 1:1580819/1‑34 (MQ=38)
aGATCCCTTCCATTCGTCAAAACCTGGTGTACCGcc > 1:7721541/1‑36 (MQ=255)
aGATCCCTTCCATTCGTCAAAACCTGGTGTACCGcc > 1:1825892/1‑36 (MQ=255)
aGATCCCTTCCATTCGTCAAAACCTGGTGTACCGcc > 1:3077202/1‑36 (MQ=255)
aGATCCCTTCCATTCGTCAAAACCTGGTGTACCGcc > 1:7366861/1‑36 (MQ=255)
aGACCCCTTCCATTCGTCAAAACCTGGTGTACCGcc < 1:5482561/36‑1 (MQ=255)
gATCCCTTCCATTCGTCAAAACCTGGTGTACCGCCa > 1:2400707/1‑36 (MQ=255)
aTCCCTTCCATTCGTCAAAACCTGGTGTACCGCCAg < 1:4852615/36‑1 (MQ=255)
aTCCCTTCCATTCGTCAAAACCTGGTGTACCGCCAg > 1:5278303/1‑36 (MQ=255)
tCCCTTCCATTCGTCAAAACCTGGTGTACCGCCAGa > 1:2805374/1‑36 (MQ=255)
ccccTTCCATCCGTAAAACCCTGGTGTACCGCCAGa < 1:5661077/35‑1 (MQ=25)
ccTTCCATTCGTCAAAACCTGGTGTACCGCCAGAac > 1:7464042/1‑36 (MQ=255)
ccTTCCATTCGTAAAAACCTGGTGTACCGCCAGAac < 1:6227083/36‑1 (MQ=255)
ccTTCCATTCGAAAAACCCGGGTGTACCGCCAGAac < 1:2866692/36‑1 (MQ=16)
ttCCATTCGTCAAAACCTGGTGTACCGCCAGAacga < 1:7759875/36‑1 (MQ=255)
ttCCATTCGTCAAAACCTGGTGTACCGCCAGAacga > 1:4583107/1‑36 (MQ=255)
ttCCATTCAAAAAACCGTGTTTTACCGCCAGAacga < 1:2904540/36‑1 (MQ=2)
tCCATTCGTCAAAACCTGGTGTACCGCCAGAacgac > 1:4562159/1‑36 (MQ=255)
tCCATTCGTAAAAACCTGGTGTACCTCCAGAacgac < 1:7440099/36‑1 (MQ=37)
tCCATTCGCAAAAACCGGGTGTACCGCCAGAacgac < 1:3975679/36‑1 (MQ=25)
ccaaTTCGAAAAACCCTGGTGAACCGCCAGAacgac < 1:6311738/33‑1 (MQ=16)
ccATTCGTCAAAACCTGGTGTACCGCCAGAacgacg > 1:211717/1‑36 (MQ=255)
ccATTCGTCAAAACCTGGTGTACCGCCAGAacgacg > 1:7479254/1‑36 (MQ=255)
ccATTCGAAAAAACCTGGTGTACCGCCAGAacgacg < 1:1655634/36‑1 (MQ=37)
cATTCGTCAAAACCTGGTGTACCGCCAGAACGACgt > 1:727684/1‑36 (MQ=255)
cATTCGTAAAACCCTGGTGTACCGCCAGAACGACgt < 1:5947526/36‑1 (MQ=37)
aaTTCGTCAAAACCTGGTGTACCGCCAGAACGACgt < 1:7099833/35‑1 (MQ=255)
aTTCGTCAAAACCTGGTGTAAAGCCAGAACGACgtg > 1:2691246/1‑36 (MQ=37)
aTTCGAAAAACCCGGGTGTACCGCCAGAACGACgtg < 1:3764828/36‑1 (MQ=16)
ttCGTCAAAACCTGGTGTACCGCCAGAACGACgtgg < 1:5416020/36‑1 (MQ=255)
tCGTCAAAACCTGGTGTACCGCCAGAACGACgtggt < 1:7100636/36‑1 (MQ=255)
tCGTCAAAACCTGGTGTACCGCCAGAACGACgtggt > 1:4140831/1‑36 (MQ=255)
tCGTAAAACCCGGGTGTACCGCCAGAACGACgtggt < 1:6696410/36‑1 (MQ=25)
tCGTAAAAACCTGTTGTACCGCCAGAACGACgtggt < 1:2225681/36‑1 (MQ=37)
cGTCAAAACCTGGTGTACCGCCAGAACGACgtggtg < 1:7319399/36‑1 (MQ=255)
gTCAAAACCTGGTGTACCGCCAGAACGACGTGgtgt > 1:1380978/1‑36 (MQ=255)
tCAAAACCTGGTGTACCGCCAGAACGACGTGGTGtt > 1:4020736/1‑36 (MQ=255)
cAAATCCTGGTGTGCCGCCAGAACGACGTGGTGTTg < 1:7459304/36‑1 (MQ=37)
cAAAACCTGGTGTACCGCCAGAACGACGTGGTGTTg > 1:2909943/1‑36 (MQ=255)
cAAAACCTGGTGTACCGCCAGAACGACGTGGTGTTg > 1:6520378/1‑36 (MQ=255)
|
AAACTCAAATCCATATCCAGATCCCTTCCATTCGTCAAAACCTGGTGTACCGCCAGAACGACGTGGTGTTG > REL606/4226653‑4226723
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|