New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)20 (0.380) 18/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128
                                  |                                   
atcatACACTAAATCAGTACGTTGGCAGCATCACCc                                    <  1:593494‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:960370‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:904437‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:6310923‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:6110763‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:5822181‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:4374233‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3980703‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:3952743‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:3802457‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:1050542‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    <  1:1900080‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:1918359‑M2/1‑35 (MQ=255)
atcatACAATAAATCAGTAAGTTGGCAGCATCACCc                                    >  1:7553708‑M2/1‑35 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:4166494‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:2191012‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:5666700‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:5827797‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:1253350‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:6241807‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:1249077‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   <  1:2969117‑M2/36‑3 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:2899473‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:6977570‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAAGTTGGCAGCATCACCca                                   >  1:7453531‑M2/1‑34 (MQ=255)
 tcatACACTAAATCAGTAACTTGGCAGCATCACCca                                   >  1:1094691‑M2/1‑34 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCCCCcaa                                  >  1:6332939‑M2/1‑33 (MQ=255)
  catACACTAAATCAGTAAGTTGGCAGCATCACCcaa                                  <  1:6678083‑M2/36‑4 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:5710679‑M2/36‑5 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 >  1:7547719‑M2/1‑32 (MQ=255)
   atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa                                 <  1:4202216‑M2/36‑5 (MQ=255)
    tACACTAAATCAGTACGTTAGCAGCATCACCCaaac                                <  1:5395517/36‑2 (MQ=11)
    tACACTAAATCAGTAAGTTGGCAGCATCACCCAAat                                >  1:2734672/1‑36 (MQ=35)
    tACACTAAATCAGTAAGTTGGCAGCATCACCCAAat                                <  1:5933536/36‑1 (MQ=35)
    tACACTAAATCAGAAAGTTGGCAGCATCACCCAAat                                >  1:5571320/1‑36 (MQ=255)
     acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg                               <  1:4863683‑M2/36‑7 (MQ=255)
      cacTAAATCAGTAAGTTGGCAGCATCACCCAAatat                              >  1:346547/1‑36 (MQ=40)
       acTAAATCAGTAAGTTGGCAGCATCACCcaaacgcg                             <  1:2214560‑M2/36‑9 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCcaaacgcg                             >  1:3377415‑M2/1‑28 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCCAAATATc                             >  1:6529734/1‑36 (MQ=255)
       acTAAATCAGTAAGTTGGCAGCATCACCCAAATATc                             <  1:6053100/36‑1 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCCAAATATcc                            <  1:4474649/36‑1 (MQ=255)
        cTAAATCAGTAAGTTGGCAGCATCACCCAAATATcc                            <  1:4551460/36‑1 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca                           >  1:557382‑M2/1‑26 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCCAAATATCCt                           <  1:2394485/36‑1 (MQ=255)
         tAAATCAGTAAGTTGGCAGCATCACCCAAATATCCt                           >  1:3744635/1‑36 (MQ=255)
          aaaTCAGTAAGTTGGCAGCATCACCcaaacgcgcat                          >  1:1910311‑M2/1‑25 (MQ=255)
          aaaTCAGTAAGTTGGCAGCATCACCCAAATATCCtt                          <  1:1515822/36‑1 (MQ=255)
          aaaTCAGTAAGTTGGCAGCATCACCCAAATATCCtt                          <  1:1910076/36‑1 (MQ=255)
           aaTCAGTAAGTTGGCAGCATCACCCAAATATCCTtg                         <  1:5850144/36‑1 (MQ=255)
            aTCAGTAAGTTGGCAGCATCACCCAAATATCCTtgt                        >  1:6933829/1‑36 (MQ=255)
             tCAGTAAGTTGGCAGCATCACCcaaacgcgcatcag                       >  1:7776312‑M2/1‑22 (MQ=255)
             tCAGTAAGTTGGCAGCATCACCCAAATATCCTtgtg                       <  1:3363156/36‑1 (MQ=255)
             tCAGTAAGTTGGCAGCATCACCCAAATATCCTtgtg                       <  1:3516560/36‑1 (MQ=255)
              cAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGa                      <  1:629818/36‑1 (MQ=255)
               aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt                     <  1:3631579‑M2/36‑17 (MQ=255)
                gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg                    <  1:6381789‑M2/36‑18 (MQ=255)
                gTAAGTTGGCAGCATCACCCAAATATCCTTGTGata                    <  1:1862784/36‑1 (MQ=255)
                  aaGTTGGCAGCATCACCcaaacgcgcatcaggtgca                  >  1:7462964‑M2/1‑17 (MQ=255)
                  aaGTTGGCAGCATCACCCAAATATCCTTGTGataat                  >  1:548390/1‑36 (MQ=255)
                   aGTTGGCAGCATCACCcaaacgcgcatcaggttcaa                 >  1:4881685‑M2/1‑16 (MQ=255)
                    gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac                <  1:5390266‑M2/36‑22 (MQ=255)
                    gTTGGCAGCATCACCCAAATATCCTTGTGATAatat                <  1:2222802/36‑1 (MQ=255)
                    gTTGGCAGCATCACCCAAATATCCTTGTGATAatat                <  1:2685246/36‑1 (MQ=255)
                     ttGGCAGCATCACCCAAATATCCTTGTGATAAtatt               <  1:4531778/36‑1 (MQ=255)
                      tGGCAGCATCACCcaaacgcgcatcaggtgcaacat              >  1:5620997‑M2/1‑13 (MQ=255)
                      tGGCAGCATCACCCAAATATCCTTGTGATAAtattt              <  1:6273468/36‑1 (MQ=255)
                      tGGCAGCATCACCCAAATATCCTTGTGATAAtattt              >  1:2259488/1‑36 (MQ=255)
                       ggCAGCATCACCCAAATATCCTTGTGATAAtattta             <  1:5323714/36‑1 (MQ=255)
                        gcagcaTCACCCAAATATCCTTGTGATAAtatttat            <  1:6524315/36‑1 (MQ=255)
                         cagcaTCACCCAAATATCCTTGTGATAAtatttatt           <  1:2471705/36‑1 (MQ=255)
                          agcaTCACCcaaacgcgcatcaggtgcaacatacat          >  1:5860097‑M2/1‑9 (MQ=255)
                           gcaTCACCcaaacgcgcatcaggtgcaacatacatt         >  1:7013093‑M2/1‑8 (MQ=255)
                           gcaTCACCCAAATATCCTTGTGATAATATTtattat         <  1:2686993/36‑1 (MQ=255)
                           gcaTCACCCAAATATCCTTGTGATAATATTtattat         >  1:4891153/1‑36 (MQ=255)
                            caTCACCcaaacgcgcatcaggtgcaacatacatta        <  1:2367388‑M2/36‑30 (MQ=255)
                             aTCACCCAAATATCCTTGTGATAATATTTATTATaa       <  1:7152320/36‑1 (MQ=255)
                              tCACCcaaacgcgcatcaggtgcaacatacattaat      >  1:5376087‑M2/1‑5 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     >  1:7537848‑M2/1‑4 (MQ=255)
                               cACCcaaacgcgcatcaggtgcaacatacattaata     >  1:552014‑M2/1‑4 (MQ=255)
                               cACCCAAATATCCTTGCGATAATATTTATTATAAAg     >  1:7369817/1‑36 (MQ=255)
                                 cccAAATATCCTTGTGATAATATTTATTATAAAGTc   <  1:7735181/36‑1 (MQ=255)
                                  ccaaacgcgcatcaggtgcaacatacattaataaat  >  1:1388893‑M2/1‑1 (MQ=255)
                                  ccaaacgcgcatcaggtgcaacatacattaataaat  >  1:3076824‑M2/1‑1 (MQ=255)
                                  ccAAATATCCTTGTGATAATATTTATTATAAAGTCt  <  1:4699803/36‑1 (MQ=255)
                                  ccAAATATCCTTGTGATAATATTTATTATAAAGTCt  <  1:5696857/36‑1 (MQ=255)
                                  |                                   
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT  >  REL606/2035059‑2035128

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG