New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3289193 =49 (0.980)6 (0.120) 4/58 NT 13.5% coding (93/930 nt) yhcC predicted Fe‑S oxidoreductase
?REL606 3912273 = 28 (0.470)intergenic (+53/‑87) ilvL/ilvG ilvG operon leader peptide/acetolactate synthase II, valine insensitive, large subunit

ACTAAGACCCCCGCACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAT  >  REL606/3912238‑3912308
                                    |                                   
aCTAAGACCCCCGCACCGAAAGGTCC.GGGGGttttt                                     >  1:5865576/1‑36 (MQ=255)
aCTAAGACCCCCGCACCGAAAGGTCC.GGGGGttttt                                     >  1:2777603/1‑36 (MQ=255)
 cTAAGACCCCCGCACCGAAAGGTCC.GGGGGtttttt                                    <  1:6040631/36‑1 (MQ=255)
 aaaaggtgcataagctgacgctgcacggcgggtttt                                     >  1:4531100‑M2/36‑36 (MQ=255)
  tAAGACCCCCGCACCGAAAGGTCC.GGGGGttttttt                                   <  1:5042071/36‑1 (MQ=255)
  tAAGACCCCCGCACCGAAAGGTCC.GGGGGctttttt                                   >  1:5514903/1‑36 (MQ=255)
  aaaggtgcataagctgacgctgcacggcgggttttt                                    >  1:4860640‑M2/35‑36 (MQ=255)
   aaGACCCCCGCACCGAAAGGTCC.GGGGGtttttttt                                  <  1:6284396/36‑1 (MQ=255)
    aggtgcataagctgacgctgcacggcggtttttgct                                  >  1:7580164‑M2/33‑33 (MQ=255)
    aGACCCCCGCACCTAAAGGTCC.GGGGGTTTTTTTTg                                 <  1:5270513/36‑1 (MQ=255)
    aGACCCCCGCACCGAAAGGTCC.GGGGGTTTTTTTTg                                 <  1:4516980/36‑1 (MQ=255)
     ggtgcataagctgacgctgcacggcggttttttctt                                 >  1:2265830‑M2/32‑33 (MQ=255)
     gACCCCCGCACCGAAAGGTCC.GGGGGTTTTTTTTGa                                >  1:1369223/1‑36 (MQ=255)
      tcccccGCACGGAAAGGTCC.GGGGGTTTTTTTTCAc                               <  1:3170560/35‑1 (MQ=37)
       cccccGCACCGAAAGGTCC.GGGGGTTTTTTTTGAcc                              >  1:2361273/1‑36 (MQ=255)
        gcataagctgacgctgcacggcggatttTTTTGAcc                              >  1:634997‑M2/29‑36 (MQ=255)
         cccCCACCGAAAGGTCC.GGGGGTTTTTTTTGACCtt                            <  1:5116189/36‑1 (MQ=255)
         cataagctgacgctgcacggcggttttTTTTGCCCt                             >  1:4845598‑M2/28‑36 (MQ=255)
           cGCACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaa                          >  1:2430264/1‑36 (MQ=255)
            gCACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaa                         <  1:7540641/36‑1 (MQ=255)
            gCACCGAAAGGTCC.GGGGG.TTTTTTTGACCTTaaaa                        >  1:5308663/1‑36 (MQ=37)
             cACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaa                        <  1:5932426/36‑1 (MQ=255)
             cACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaa                        >  1:408283/1‑36 (MQ=255)
              aCCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaaa                       >  1:3406166/1‑36 (MQ=255)
              aCCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaaa                       >  1:2390113/1‑36 (MQ=255)
              aCCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaaa                       >  1:7100263/1‑36 (MQ=255)
              aCCGAAAGGTCC.GGGGGTTTTTTTTGACCTTaaaaa                       >  1:1515195/1‑36 (MQ=255)
              aCCGAAAGGTCC.GGGGGTTTGTTTTGACCTTaaaaa                       >  1:528297/1‑36 (MQ=255)
               cccaaaGGGCCGGGGGGTTTTTTTTGACCTTaaaaa                       <  1:3143272/33‑1 (MQ=16)
               ccGAAAGGTCC.GGGGGTTTTTTTTGACCTTAAAAAc                      <  1:4813778/36‑1 (MQ=255)
                 gAAAGGTCC.GGGGGTTTTTTTTGACCTTAAAAACAt                    <  1:4707773/36‑1 (MQ=255)
                  aaaGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATa                   <  1:2509473/36‑1 (MQ=255)
                   aaGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATaa                  >  1:5209770/1‑36 (MQ=255)
                   aaGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATaa                  >  1:3866299/1‑36 (MQ=255)
                    aGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATAAc                 <  1:94622/36‑1 (MQ=255)
                    aGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATAAc                 <  1:4274047/36‑1 (MQ=255)
                     ggTCC.GGGGGTTTTTTTTGACCTTAAAAACATAAcc                >  1:4718129/1‑36 (MQ=255)
                     ggTCC.GGGGGTTTTTTTTGACCTTAAAAACATAAcc                >  1:6049824/1‑36 (MQ=255)
                      gTCC.GGGGGTTTTTTTTGACCTTAAAAACATAACCg               >  1:304682/1‑36 (MQ=255)
                      gTCC.GGGGGTTTTTTTTGACCTTAAAAACATAACCg               >  1:2413546/1‑36 (MQ=255)
                       tCC.GGGGGTTTTTTTTGACCTTAAAAACATAACCga              >  1:851455/1‑36 (MQ=255)
                           gggggTTTTTTTTGACCTTAAAAACATAACCgagga           >  1:1371284/1‑36 (MQ=255)
                            ggggTTTTTTTTGACCTTAAAAACATAACCgaggag          >  1:1598360/1‑36 (MQ=255)
                              ggttttTTTTGACCTTAAAAACATAACCGAGGAGCa        <  1:3057289‑M2/30‑1 (MQ=255)
                                ttttTTTTGACCTTAAAAACATAACCGAGGAGCAGa      <  1:2359230‑M2/32‑1 (MQ=255)
                                 tttTTTTGACCTTAAAAACATAACCGAGGAGCAGAc     <  1:1692055‑M2/33‑1 (MQ=255)
                                 tttTTTTGACCTTAAAAACATAACCGAGGAGCAGAc     <  1:3031057‑M2/33‑1 (MQ=255)
                                 tttTTTTGACCTTAAAAACATAACCGAGGAGCAGAc     >  1:5245643‑M2/4‑36 (MQ=255)
                                  ttTTTTGACCTTAAAAACATAACCGAGGAGCAGACa    <  1:5187269‑M2/34‑1 (MQ=255)
                                    ttttGACCTTAAAAACATAACCGAGGAGCAGACAAt  >  1:2270946/1‑36 (MQ=255)
                                    ttttGACCTTAAAAACATAACCGAGGAGCAGACAAt  <  1:1203158/36‑1 (MQ=255)
                                    ttttGACCTTAAAAACATAACCGAGGAGCAGAAAAt  >  1:5823477/1‑36 (MQ=255)
                                    |                                   
ACTAAGACCCCCGCACCGAAAGGTCC.GGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAT  >  REL606/3912238‑3912308

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG