New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 619117 =NA (NA)9 (0.150) 8/66 NT 15.8% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997448 48 (0.780)coding (116/903 nt) ECB_02798 conserved hypothetical protein

ACATAAAACACTATCAATAAGTTGGAGTCATTACCGC..................................  <  REL606/619151‑619117
...................................GCGATAAAACGTTCCGGGGGATCATAAACATTAAGG  <  REL606/2997448‑2997413
                                                                       
    AAAACACTATCAATAAGTTGGAGTCATTACCGCGAT                                 <  1:3132913/36‑1 (MQ=1)
      AACACTATCAATAAGTTGGAGTCATTACCGCGATAA                               <  1:8459492/36‑1 (MQ=35)
         ACTATCAATAAGTTGGAGTCATTACCGCGATAAAAC                            <  1:6327718/36‑1 (MQ=38)
           TATCAATAAGTTGGAGTCATTACCGCGATAAAACGT                          <  1:1430125/36‑1 (MQ=38)
           TATCAATAAGTTGGAGTCATTACCGCGATAAAACGT                          <  1:2872668/36‑1 (MQ=38)
              CAATAAGTTGGAGTCATTACCGCGATAAAACGTTCC                       <  1:1260521/36‑1 (MQ=255)
                ATAAGTTGGAGTCATTACCGCGATAAAACGTTCCGG                     >  1:6564195/1‑36 (MQ=255)
                            CATTACCGCGATAAAACGTTCCGGGGGATCATAAAC         <  1:359086/36‑1 (MQ=255)
                                ACCGCGATAAAACGTTCCGGGGGATCATAAACATTA     <  1:7200254/36‑1 (MQ=255)
                                                                       
ACATAAAACACTATCAATAAGTTGGAGTCATTACCGC..................................  <  REL606/619151‑619117
...................................GCGATAAAACGTTCCGGGGGATCATAAACATTAAGG  <  REL606/2997448‑2997413

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG