Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,062,841 | C→A | 9.8% | L18F (TTG→TTT) | yccZ ← | predicted exopolysaccharide export protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,062,841 | 0 | C→A | 9.8% | 2.1 ‑4.3 0.0 | 53 | 54 | yccZ | predicted exopolysaccharide export protein |
Reads supporting (aligned to +/- strand): new base (1/5): ref base (34/13): total (35/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.39e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATAAATTCTGACCAGGAACAAGGGTACATGCTGTCAAAGACAGAACAGCCAATGTCAGTACCGAAAACTT > REL606/1062807‑1062876
|
aTAAATTCTGACCAGGAACAAGGGTACATGCTGTCa < 1:3436466/36‑1 (MQ=255)
aTAAATTCTGACCAGGAACAAGGGTACATGCTGTCa > 1:2705252/1‑36 (MQ=255)
aTAAATTCTGACCAGGAACAAGGGGACATGCTGTCa > 1:502133/1‑36 (MQ=255)
tAAATTCTGACCAGGAACAAGGGTACATGCTGTCaa > 1:1394945/1‑36 (MQ=255)
tAAATTCTGACCAGGAACAAGGGTACATGCTGTCaa < 1:7010760/36‑1 (MQ=255)
aaaTTCTGACCAGGAACAAGGGTACATGCTGTCaaa < 1:5235082/36‑1 (MQ=255)
aaaTTCTGACCAGGAACAAGGGTACATGCTGTCaaa < 1:7638640/36‑1 (MQ=255)
aTTCTGACCAGGAACAAGGGTACATGATGTCAAAGa > 1:4177334/1‑36 (MQ=255)
ttCTGACCAGGAACAAGGGTACATGCTGTCAAAGAc > 1:5037258/1‑36 (MQ=255)
ttCTGACCAGGAACAAGGGTACATGCTGTCAAAGAc < 1:2449720/36‑1 (MQ=255)
tCTGACCAGGAACAAGGGTACATGCTGTCAAAGACa > 1:8290063/1‑36 (MQ=255)
tCTGACCAGGAACAAGGGTACATGCTGTCAAAGACa > 1:5574981/1‑36 (MQ=255)
tCTGACCAGGAACAAGGGTACATGCTGTCAAAGACa > 1:8031878/1‑36 (MQ=255)
cTGACCAGGAACAAGGGTACATGCTGTCAAAGACAg < 1:1806062/36‑1 (MQ=255)
tGACCAGGAACAAGGGTACATGCTGTCAAAGACAGa > 1:234146/1‑36 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa < 1:2998872/36‑1 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa > 1:8168760/1‑36 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa > 1:4564125/1‑36 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa < 1:538735/36‑1 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa > 1:5795022/1‑36 (MQ=255)
gACCAGGAACAAGGGTACATGCTGTCAAAGACAGaa > 1:7417883/1‑36 (MQ=255)
aCCAGGAACAAGGGTACATGCTGTCAAAGACAGAAc < 1:4149377/36‑1 (MQ=255)
aCCAGGAACAAGGGTACATGCTGTCAAAGACAGAAc > 1:4928730/1‑36 (MQ=255)
aCCAGGAACAAGGGTACATGCTGTCAAAGACAGAAc > 1:1681540/1‑36 (MQ=255)
ccAGGAACAAGGGTACATGCTGTCAAAGACAGAACa < 1:8200615/36‑1 (MQ=255)
cAGGAACAAGGGTACATGCTGTCAAAGACAGAACAg < 1:1807903/36‑1 (MQ=255)
cAGGAACAAGGGTACATGCTGTCAAAGACAGAACAg > 1:7877265/1‑36 (MQ=255)
aGGAACAAGGGTACATGCTGTCAAAGACAGAACAGc < 1:3881185/36‑1 (MQ=255)
ggAACAAGGGTACATGCTGTCAAAGACAGAACAGcc < 1:7016733/36‑1 (MQ=255)
ggAACAAGGGTACATGCTGTCAAAGACAGAACAGcc > 1:679606/1‑36 (MQ=255)
ggAACAAGGGTACATGCTGTCAAAGACAGAACAGcc > 1:1508669/1‑36 (MQ=255)
gAACAAGGGTACATGCTGTCAAAGACAGAACAGCCa > 1:5714973/1‑36 (MQ=255)
aCAAGGGTACATGCTGTCAAAGACAGAACAGCCAAt > 1:5362168/1‑36 (MQ=255)
aCAAGGGTACATGCTGTCAAAGACAGAACAGCCAAt > 1:6220713/1‑36 (MQ=255)
aaGGGTACATGCTGTCAAAGACAGAACAGCCAATGt > 1:2867428/1‑36 (MQ=255)
aaGGGTACATGCTGTCAAAGACAGAACAGCCAATGt > 1:6985384/1‑36 (MQ=255)
gggTACATGCTGAAAAAGAAAGAACAGCCAATGTCa < 1:212605/36‑1 (MQ=25)
gggTACATACTGAAAAAGAAAAACCAGCCAATGTCa < 1:2497959/36‑1 (MQ=9)
gggTAAATGCTGAAAAAGAAAAACCAGCCAATGTCa < 1:6519962/36‑1 (MQ=9)
gTACATGCTGTCAAAGACAGAACAGCCAATGTCAGt > 1:23755/1‑36 (MQ=255)
tACATGCTGTCAAAGACAGAACAGCCAATGTCAGTa > 1:2113349/1‑36 (MQ=255)
tACATGCTGTCAAAGACAGAACAGCCAATGTCAGTa > 1:5483664/1‑36 (MQ=255)
aCATGCTGAAAAAGAAAGACCAGCCAATGTCAGTAc < 1:1510622/36‑1 (MQ=19)
cATGCTGTCAAAGACAGAACAGCCAATGTCAGTAcc > 1:3261405/1‑36 (MQ=255)
cATGCTGTCAAAGACAGAACAGCCAATGTCAGTAcc > 1:8210541/1‑36 (MQ=255)
cATGCTGAAAAAGAAAAAACAGCCAATGTCAGTAcc < 1:4943600/36‑1 (MQ=16)
cATGCTCTCAAAGACAGAACAGCCAATGTCAGTAcc > 1:7477280/1‑36 (MQ=255)
aTGCTGTCAAAGACAGAACAGCCAATGTCAGTACCg > 1:916328/1‑36 (MQ=255)
aTGCTGTCAAAGACAGAACAGCCAATGTCAGTACCg > 1:1405582/1‑36 (MQ=255)
aTGCTGTCAAAGACAGAACAGCCAATGTCAGTACCg > 1:1321471/1‑36 (MQ=255)
aTGCTGTAAAAGACAGAACAGCCAATGTCAGTACCg > 1:4859747/1‑36 (MQ=255)
gTCAAAGACAGAACAGCCAATGTCAGTACCGAAAAc > 1:2705114/1‑36 (MQ=255)
gTCAAAGACAGAACAGCCAATGTCAGTACCGAAAAc > 1:2021116/1‑36 (MQ=255)
cAAAGACAGAACAGCCAATGTCAGTACCGAAAACtt > 1:4684915/1‑36 (MQ=255)
cAAAGACAGAACAGCCAATGTCAGTACCGAAAACtt > 1:4274559/1‑36 (MQ=255)
cAAAGACAGAACAGCCAATGTCAGTACCGAAAACtt > 1:132802/1‑36 (MQ=255)
|
ATAAATTCTGACCAGGAACAAGGGTACATGCTGTCAAAGACAGAACAGCCAATGTCAGTACCGAAAACTT > REL606/1062807‑1062876
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|