New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 108121731 (0.520)7 (0.120) 6/70 NT 17.9% coding (892/1260 nt) yccE hypothetical protein
?REL606 = 3014302 33 (0.550)coding (883/1137 nt) ECB_02815 Capsule polysaccharide export inner‑membrane protein kpsE

CGCCGCAGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAAC  >  REL606/3014267‑3014337
                                    |                                   
cgccacAGGGTGACAAGCTAAACCGTATGGCGG.Ggg                                     >  1:5767515/1‑36 (MQ=38)
 gccgcAGGGTGACAAGCTAAACCGTATGGCGG.TGGa                                    <  1:5337393/36‑1 (MQ=255)
 gccgcAGGGTGACAAGCTAAACCGTATGGCGG.GGGg                                    <  1:7112206‑M2/36‑2 (MQ=255)
 gccgcAGGGGGACAAGCTAAACCGTATGGCGG.Gggg                                    >  1:916534/1‑35 (MQ=37)
   cgcAGGGTGACAAGCTAAACCGTATGGCGG.TGGAtt                                  <  1:6448549/36‑1 (MQ=255)
   cgcAGGGTGACAAGCTAAACCGTATGGCGG.GGGgtt                                  <  1:3754823‑M2/36‑4 (MQ=255)
    gcAGGGTGACAAGCTAAACCGTATGGCGG.TGGAttt                                 <  1:5957401/36‑1 (MQ=255)
    gcAGGGTGACAAGCTAAACCGTATGGCGG.TGGAttt                                 <  1:2466454/36‑1 (MQ=255)
     cAGGGTGACAAGCTAAACCGTATGGCGG.TGGAtttt                                <  1:7810582/36‑1 (MQ=255)
     cAGGGTGACAAGCTAAACCGTATGGCGG.GGGgtttt                                <  1:2292326‑M2/36‑6 (MQ=255)
      aGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTg                               <  1:1023590/36‑1 (MQ=255)
      aGGGTGACAAGATAAACCGTATGGCGG.TGGATTTTg                               <  1:6436881/36‑1 (MQ=255)
       gggTGACAAGCTAAACCGTATGGCGG.TGGATTTTga                              <  1:2268705/36‑1 (MQ=255)
          tGACAAGCTAAACCGTATGGCGG.TGGattttttaaa                           <  1:7451590‑M2/36‑11 (MQ=255)
           gACAAGCTAAACCGTATGGCGG.TGGATTTTgaagaa                          <  1:3047032/36‑1 (MQ=255)
             cAAGCTAAACCGTATGGCGGCTGGTTTTTGTAAaaa                         >  1:5523242/1‑36 (MQ=12)
             cAAGCTAAACCGTATGGCGG.TGGgttttttaaaaaa                        <  1:3803923‑M2/36‑14 (MQ=255)
             cAAGCTAAACCGTATGGCGG.GGGGTTTTTTAGaaaa                        >  1:6437428/1‑35 (MQ=19)
             aaaGCTAAACCGTATGGCGG.TGGATTTTTAAGaaat                        <  1:3167832/35‑1 (MQ=255)
              aaGCTAAACCGTATGGCGG.TGGATTTTGAAGaaatc                       <  1:5646143/36‑1 (MQ=255)
               aGCTAAACCGTATGGCGG.TGGgttttttagaaaaaa                      <  1:4791600‑M2/36‑16 (MQ=255)
               aGCTAAACCGTATGGCGG.TGGgttttttaaaaaaaa                      <  1:2919884‑M2/36‑16 (MQ=255)
               aGCTAAACCGTATGGCGG.AGGGTTTTTAAAaaaaaa                      >  1:893063/1‑33 (MQ=16)
                  tAAACCGTATGGCGG.TGGATTTTGAAGaaatcaaat                   <  1:5611623/36‑1 (MQ=255)
                  tAAACCGTATGGCGG.GGGGTTTTTTATaaatcaaat                   >  1:1479177/1‑36 (MQ=16)
                   aaaCCGTATGGCGG.TGGATTTTGAAGaaatcaaatc                  <  1:5965185/36‑1 (MQ=255)
                    aaCCGTATGGCGG.TGGATTTTGAAGAaatcaaatca                 <  1:41939/36‑1 (MQ=255)
                     aCCGTATGGCGG.TGGGTTTTTTAGaaatcaaatccc                >  1:2616391/1‑34 (MQ=25)
                      ccGTATGGCGG.TGGGATTTTTAGAAAataaattaaa               >  1:5019895/1‑36 (MQ=2)
                      ccGTATGGCGG.TGGATTTTGAAGAAAtcaaatcaaa               <  1:7158016/36‑1 (MQ=255)
                        gTATGGCGG.TGGATTTTTAAGAAATCAAATCAAAAg             >  1:7423678/1‑36 (MQ=255)
                        gTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAg             <  1:6096363/36‑1 (MQ=255)
                         tATGTCGG.TGGATTTTGAAGAAATCAAATCAAAAGt            <  1:2306725/36‑1 (MQ=255)
                          aTGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTa           <  1:781235/36‑1 (MQ=255)
                           tGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTag          <  1:638762/36‑1 (MQ=255)
                            ggCGG.TGGATTTTGAAGAAATCAAATCAAAAGTaga         <  1:7618035/36‑1 (MQ=255)
                            ggCGG.TGGATTTTGAAGAAATCAAATCAAAAGTaga         >  1:522045/1‑36 (MQ=255)
                                g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc     <  1:690710/36‑1 (MQ=255)
                                g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc     >  1:7035929/1‑36 (MQ=255)
                                g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc     >  1:4480968/1‑36 (MQ=255)
                                   ggATTTTGAAGAAATCAAATCAAAAGTAGAGTTCaa   >  1:1558301/1‑36 (MQ=255)
                                   ggATTTTGAAGAAATCAAATCAAAAGTAGAGTTCaa   <  1:7391952/36‑1 (MQ=255)
                                    gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac  >  1:1893644/1‑36 (MQ=255)
                                    gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac  >  1:7352684/1‑36 (MQ=255)
                                    gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac  <  1:2757673/36‑1 (MQ=255)
                                    |                                   
CGCCGCAGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAAC  >  REL606/3014267‑3014337

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG