Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 523,473 | A→G | 16.1% | E290G (GAA→GGA) | arcC → | predicted carbamate kinase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 523,473 | 0 | A→G | 16.1% | 2.0 ‑4.4 0.0 | 39 | 869 | arcC | predicted carbamate kinase |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (15/17): total (22/17) | ||||||||||
Fisher's exact test strand distribution p-value = 1.24e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGC > REL606/523438‑523508
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ggCGTTATCGTGAATTGAAGAGACGCTGGCGGGCGa < 1:6421005/36‑1 (MQ=255)
ggCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGa > 1:6084402/1‑36 (MQ=255)
gCGTTNTCGCGAATTGAAGAGACGCTGGCGGGCGaa < 1:6112200/36‑1 (MQ=255)
gCGTTATCGCGAATTGAAGAGACGCTGGCGGGGGaa > 1:7261482/1‑36 (MQ=255)
gTTATCGCGAATTGAAGAGACGCTGGCGGGCGGAgg > 1:6549052/1‑35 (MQ=255)
gTTATCGCGAATTGAAGAGACGCTGGCGGGCGGAgg > 1:1563098/1‑35 (MQ=255)
gTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGc > 1:3145773/1‑36 (MQ=255)
gTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGc < 1:2164905/36‑1 (MQ=255)
ttATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCg > 1:3528152/1‑36 (MQ=255)
ttATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCg < 1:2901597/36‑1 (MQ=255)
tATCGCGAATTGAAGAGATGCTGGCGGGGGGAGCgg > 1:4736253/1‑36 (MQ=21)
aTCGCGAATTGAAGAGACGCTGGCGGGCGGAGCggg > 1:2210764/1‑36 (MQ=255)
aTCGCGAATTGAAGAGACGCTGGCGGGCGAAGCggg < 1:5624819/36‑1 (MQ=255)
tCGCGAATTGAAGAGACGCTGGCGGGCGAAGCgggg < 1:1816741/36‑1 (MQ=255)
gcgAATTGAAGAGACGCTGGCGGGGGGAGCgggggg > 1:1208187/1‑34 (MQ=25)
gcgAATTGAAGAGACGCTGGCGGGCGAAGCGGGGAc < 1:7173336/36‑1 (MQ=255)
gAATTGAAGAGACGCTGTCGGGCGAAGCGGGGACCt < 1:7378840/36‑1 (MQ=255)
gAATTGAAGAGACGCTGGCGGGCGAAGCGGGGGCCt > 1:3553048/1‑36 (MQ=255)
aaTTGAAGAGACGCTGGCGGGCGAAGCGGGGGcccg > 1:7225434/1‑34 (MQ=37)
aaTTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTg < 1:196061/36‑1 (MQ=255)
aaTTGAAGAGACGCTGGCGGGCGAAACGGGGACGTg > 1:6371594/1‑36 (MQ=37)
aTTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGt < 1:627332/36‑1 (MQ=255)
ttGAAGAGACGCTGGCGGGCGGAGCGGGGGCCTGTa > 1:3755593/1‑36 (MQ=37)
ttGAAGAGACGCTGGCGGGCGAAGCGGGGGCCGGtt > 1:664768/1‑35 (MQ=25)
ttGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTa < 1:7511681/36‑1 (MQ=255)
tGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTAt < 1:2124384/36‑1 (MQ=255)
gAAGAGACGCTGTCGGGCGAAGCGGGGACCTGTAtt < 1:6617081/36‑1 (MQ=255)
aaGAGACGATGGCGGGCGGGGCGGGGACCTGGAttt > 1:6849810/1‑36 (MQ=19)
agagACGCTGGCGGGCGAAGCGGGGACCTGTATTTc < 1:5937555/36‑1 (MQ=255)
agaCGCTGGCGGGCGAAACGGGGACCTGTATTTCGc > 1:6067710/1‑36 (MQ=255)
cTGGCGGGCGAATCGGGGTCCTGTATTTCGCTGTAg < 1:3037870/36‑1 (MQ=37)
cTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAg < 1:4013316/36‑1 (MQ=255)
cTGGCGGGCGAAGCGGGGACATGTATTTCGCTGTAg > 1:475927/1‑36 (MQ=255)
tGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGt > 1:5048363/1‑36 (MQ=255)
tGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGt > 1:1964682/1‑36 (MQ=255)
cgggcgAAGCGGGGACCTGTATTTCGCTGTAGtgat > 1:4833235/1‑36 (MQ=255)
cgggcgAAGCGGGGACCTGTATTTCGCTGTAGtgat < 1:1353112/36‑1 (MQ=255)
ggcgAAGCGGGGCCCTGTATTTCGCTGTAGtgatga > 1:112350/1‑36 (MQ=255)
ggcgAAGCGGGGACCTGTATTTCGCTGTAGtgatga < 1:664120/36‑1 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga > 1:65038/1‑36 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga > 1:4576279/1‑36 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga < 1:3277039/36‑1 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:1631608/1‑36 (MQ=255)
aaGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGc > 1:3258485/1‑36 (MQ=255)
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GGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGC > REL606/523438‑523508
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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