New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)20 (0.380) 18/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959
                                   |                                   
atcatacactaaatcagtacgttggcagcatcaccc                                     <  1:593494‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:960370‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:904437‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:6310923‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:6110763‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:5822181‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:4374233‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3980703‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3952743‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:3802457‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:1050542‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:1900080‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:1918359‑M1/36‑36 (MQ=255)
atcatacaataaatcagtaagttggcagcatcaccc                                     >  1:7553708‑M1/36‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:7453531‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:6977570‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:1249077‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:6241807‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:1253350‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:5827797‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:5666700‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:2899473‑M1/35‑36 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:2969117‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:4166494‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:2191012‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaacttggcagcatcaccCa                                    >  1:1094691‑M1/35‑36 (MQ=255)
  catacactaaatcagtaagttggcagcatccccCaa                                   >  1:6332939‑M1/34‑36 (MQ=255)
  catacactaaatcagtaagttggcagcatcaccCaa                                   <  1:6678083‑M1/3‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:4202216‑M1/4‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  >  1:7547719‑M1/33‑36 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:5710679‑M1/4‑1 (MQ=255)
     acactaaatcagtaagttggcagcatcaccCAAAcg                                <  1:4863683‑M1/6‑1 (MQ=255)
       actaaatcagtaagttggcagcatcaccCAAAcgcg                              <  1:2214560‑M1/8‑1 (MQ=255)
       actaaatcagtaagttggcagcatcaccCAAAcgcg                              >  1:3377415‑M1/29‑36 (MQ=255)
         taaatcagtaagttggcagcatcaccCAAACGCGCa                            >  1:557382‑M1/27‑36 (MQ=255)
          aaatcagtaagttggcagcatcaccCAAACGCGCAt                           >  1:1910311‑M1/26‑36 (MQ=255)
             tcagtaagttggcagcatcaccCAAACGCGCATCAg                        >  1:7776312‑M1/23‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      <  1:3631579‑M1/16‑1 (MQ=255)
                gtaagttggcagcatcaccCAAACGCGCATCAGGTg                     <  1:6381789‑M1/17‑1 (MQ=255)
                  aagttggcagcatcaccCAAACGCGCATCAGGTGCa                   >  1:7462964‑M1/18‑36 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTTCaa                  >  1:4881685‑M1/17‑36 (MQ=255)
                    gttggcagcatcaccCAAACGCGCATCAGGTGCAac                 <  1:5390266‑M1/21‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               >  1:5620997‑M1/14‑36 (MQ=255)
                          agcatcaccCAAACGCGCATCAGGTGCAacatacat           >  1:5860097‑M1/10‑36 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          >  1:7013093‑M1/9‑36 (MQ=255)
                            catcaccCAAACGCGCATCAGGTGCAACATACATta         <  1:2367388‑M1/29‑1 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       >  1:5376087‑M1/6‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:552014‑M1/5‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:7537848‑M1/5‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   >  1:3076824‑M1/2‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   >  1:1388893‑M1/2‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:4975342‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:2003694‑M1/1‑36 (MQ=255)
                                   |                                   
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG