New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)26 (0.610) 20/66 NT 81.2% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 3630716 6 (0.130)intergenic (‑171/‑305) ldrD/yhjV toxic polypeptide, small/predicted transporter

TTTAACTGTCCAACTTTTTGGGGTCAGTACACC...................................  >  REL606/590441‑590471
...............................CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  REL606/3630716‑3630680
                                                                    
TTTAACTGTCCACCTTTTTGGGGTCAGTACACCGGT                                  <  1:5919170/36‑1 (MQ=0)
TTTAACTGTCCAACTTTTTGGGGTCAGTACCCCGGT                                  <  1:843158/36‑1 (MQ=0)
  TAACTGTCCAACTTTTTGGGGTCAGTACACCGGTGA                                <  1:5728154/36‑1 (MQ=1)
   AACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAG                               >  1:4424439/1‑36 (MQ=1)
    ACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAGG                              >  1:744781/1‑36 (MQ=1)
    ACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAGG                              >  1:3752164/1‑36 (MQ=1)
       GTCCAACTTTTTGGGGTCAGTACACCGGTGAGGCGC                           <  1:420952/36‑1 (MQ=1)
       GTCCAACTTTTTGGGGTCAGTACACCGGTGAGGCGC                           >  1:400759/1‑36 (MQ=1)
       GTCCAACTTTTTGGGGTCAGTACACCGGTGAGGCGC                           >  1:2502611/1‑36 (MQ=1)
               TTTTGGGGTCAGTACACCGGTGAGGCGCAATGTTGC                   <  1:332214/36‑1 (MQ=1)
               TTTTGGGGTCAGTACACCGGTGAGGCGCAATGTTGC                   <  1:440536/36‑1 (MQ=1)
                TTTGGGGTCAGTACACCGGTGAGGCGCAATGTTGCG                  <  1:1531713/36‑1 (MQ=1)
                 TTGGGGTCAGTACACCGGTGAGGCGCAATGTTGCGG                 <  1:5088475/36‑1 (MQ=1)
                  TGGGGTCAGTACACCGGTGAGGCGCAATGTTGCGGG                >  1:806559/1‑36 (MQ=1)
                   GGGGTCAGTACACCGGTGAGGCGCAATGTTGCGGGG               >  1:1627062/1‑36 (MQ=1)
                    GGGTCAGTACACCGGTGAGGCGCAATGTTGCGGGGG              >  1:5340674/1‑36 (MQ=1)
                    GGGTCAGTACACCGGTGAGGCGCAATATTGCGGGGG              >  1:2903545/1‑36 (MQ=0)
                     GGTCAGTACACCGGTGAGGCGCAATGGTGCGGGGGC             >  1:386842/1‑36 (MQ=0)
                      GTCAGTACACCGGTGAGGCGCAATGTTGCGGGGGCT            >  1:3425274/1‑36 (MQ=1)
                       TCAGTACACCGGTGAGGCGCAATGTTGCGGGGGCTT           <  1:3168903/36‑1 (MQ=1)
                       TCAGTACACCGGTGAGGCGCAATGTTGCGGGGGCTT           <  1:2133692/36‑1 (MQ=1)
                        CAGTACACCGGTGAGGCGCAATGTTGCGGGGGCTTT          >  1:3844889/1‑36 (MQ=1)
                         AGTACACCGGTGAGGCGCAATGTTGCGGGGGCTTTA         >  1:2784274/1‑36 (MQ=1)
                            ACACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCC      >  1:4791161/1‑36 (MQ=1)
                             CACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCC     <  1:1693572/36‑1 (MQ=1)
                              ACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCT    <  1:792884/36‑1 (MQ=1)
                                                                    
TTTAACTGTCCAACTTTTTGGGGTCAGTACACC...................................  >  REL606/590441‑590471
...............................CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  REL606/3630716‑3630680

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG