Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,342,867 | T→G | 13.4% | Q299P (CAG→CCG) | nuoG ← | NADH dehydrogenase subunit G |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,342,867 | 0 | T→G | 13.4% | 16.3 ‑0.3 ‑0.4 | 59 | 896 | nuoG | NADH dehydrogenase subunit G |
Reads supporting (aligned to +/- strand): new base (5/3): ref base (27/24): total (32/27) | ||||||||||
Fisher's exact test strand distribution p-value = 7.15e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.28e-01 |
ACTGACGCAGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCGCCAC > REL606/2342832‑2342900
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aCTGACGCAGAATATCTGCTGCGCCCTGCATTGCCt < 1:5650239/36‑1 (MQ=255)
aCTGACGCAGAATATCTGCTGCGCCCTGCATTGCCt > 1:3587047/1‑36 (MQ=255)
aCTGACGCAGAATATCTGCTGAGCCCTGCATTGCCt > 1:5407036/1‑36 (MQ=255)
tcaCGCATAATATCTGCTGCGCCCTGCATTGCCTGt < 1:984580/34‑1 (MQ=37)
tGACGCAGAATATCTGCTGCGCCCTGCATTGCCTGt < 1:2304841/36‑1 (MQ=255)
tGACGCAGAATATCTGCTGCGCCCTGCATTGCCTGt > 1:7851303/1‑36 (MQ=255)
tGACGCAGAATATATGCTGCGCACTGCATTGCCTGt > 1:7615681/1‑36 (MQ=38)
aCGCAGAATATCTGCTGCGCCCTGCATTGCCTGTTc < 1:5680777/36‑1 (MQ=255)
aCGCAGAATATCTGCTGCGCCCTGCATTGCCTGTTc < 1:2288413/36‑1 (MQ=255)
aCGCAGAATATCTGCTGCGCCCTGCATTGCCTGTTc < 1:4961156/36‑1 (MQ=255)
cGCAGAATATCTGCTGCGCCCTGCATTGCCGGTTCg < 1:2829070/36‑1 (MQ=255)
gCAGAATATCTGCTGCGCCCTGCATTGCCTGTTCgg < 1:5063841/36‑1 (MQ=255)
gCAGAATATCTGCTGCGCCCTGCATTGCCTGTTCgg > 1:4787574/1‑36 (MQ=255)
gCAGAATATCTGCTGCGCCCTGCATTGCCTGTTCgg < 1:6364471/36‑1 (MQ=255)
cAGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGc > 1:2188250/1‑36 (MQ=255)
cAGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGc > 1:494825/1‑36 (MQ=255)
cAGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGc > 1:4637708/1‑36 (MQ=255)
cAGAATATCTGCTGCGCCCTGCATTGCCGGTTCGGc < 1:6168314/36‑1 (MQ=255)
aGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGCg > 1:4081480/1‑36 (MQ=255)
gAATATCTGCTGCGTCCTGCATTGCCGGTTAGGCGt > 1:6816648/1‑36 (MQ=21)
aaTATCTGCTGCGCCCTGCATTGCCTGTTCGGCGtt < 1:7337638/36‑1 (MQ=255)
aaTATCTGCTGCGCCCTGCATTGCCTGTTCGGCGtt < 1:668420/36‑1 (MQ=255)
atatCTGCTGCGCCCTGCATTGCCTGTTCGGCGTTg < 1:3002175/36‑1 (MQ=255)
tatCTGCTGCGCCCTGCATTGCCTGTTCGGCGTTGa > 1:127210/1‑36 (MQ=255)
tatCTGCTGCGCCCTGCATTGCCTGTTCGGCGTTGa > 1:1870640/1‑36 (MQ=255)
ctgctgCGCCCTGCATTGCCTGTTCGGCGTTGAggg < 1:7688660/36‑1 (MQ=255)
ctgctgCGCCCTGCATTGCCTGTTCGGCGTTGAggg > 1:7146164/1‑36 (MQ=255)
ctgctgCGCCCTGCATTGCCTGTTCGGCGTTGAggg > 1:4295586/1‑36 (MQ=255)
ctgctgCGCCCTGCATTGCCGGTTCGGCGTTGAggg > 1:429652/1‑36 (MQ=255)
tgctgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGt < 1:4323469/36‑1 (MQ=255)
gctgcGCCCTGCATTGCCGGTTCGGCGTTGAGGGTa > 1:3598692/1‑36 (MQ=255)
ctgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGTaa < 1:417971/36‑1 (MQ=255)
ctgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGTaa > 1:5214756/1‑36 (MQ=255)
ctgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGTaa > 1:6034920/1‑36 (MQ=255)
tgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGTAAt < 1:3601669/36‑1 (MQ=255)
tgcGCCCTGCATTGCCTGTTCGGCGTTGAGGGTAAt > 1:5190153/1‑36 (MQ=255)
tgcGCCCTGCATTGCCTGTTCAGCGTTGAGGGTAAt > 1:7692373/1‑36 (MQ=255)
tgcGCCCTGCATTGCCGGTTCGGCGTTGAGGGTAAt > 1:6284339/1‑36 (MQ=255)
cgcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGa < 1:4529135/36‑1 (MQ=255)
cgcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGa < 1:7161972/36‑1 (MQ=255)
cgcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGa > 1:3151873/1‑36 (MQ=255)
cgcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGa > 1:3073100/1‑36 (MQ=255)
cgcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGa < 1:2348057/36‑1 (MQ=255)
gcCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGaa < 1:7678140/36‑1 (MQ=255)
ccTGCATTGCCTGTTCGGCGTTGAGGGTAATGAAat > 1:5959333/1‑36 (MQ=255)
ccTGCATTGCCGGTTCGGCGTTGAGGGTAATGAAat > 1:5796841/1‑36 (MQ=255)
cTGCATTGCCTGTTCGGCGTTGAGGGTAATGAAatc > 1:863230/1‑36 (MQ=255)
tGCATTGCCTGTTCGGCGTTGAGGGTAATGAAatca > 1:5944060/1‑36 (MQ=255)
tGCATTGCCTGTTCGGCGTTGAGGGTAATGAAatca > 1:4131629/1‑36 (MQ=255)
gCATTGCCTGTTCGGCGTTGAGGGTAATGAAatcat > 1:5426274/1‑36 (MQ=255)
gCATTGCCTGTTCGGCGTTGAGGGTAATGAAatcat < 1:437238/36‑1 (MQ=255)
gCATTGCCGGTTCGGCGTTGAGGGTAATGAAatcat < 1:1428773/36‑1 (MQ=255)
aTTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCg > 1:3935708/1‑36 (MQ=255)
aTTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCg > 1:1672554/1‑36 (MQ=255)
aTTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCg < 1:3238757/36‑1 (MQ=255)
aTTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCg > 1:1905350/1‑36 (MQ=255)
tGCCTGTTCGGCGTTGAGGGTAATGAAATCATCGcc > 1:2760955/1‑36 (MQ=255)
tGCCTGTTCGGCGTTGAGGGTAATGAAATCATCGcc < 1:101419/36‑1 (MQ=255)
gCCTGTTCGGCGTTGAGGGTAATGAAATCATCGCCa < 1:4619181/36‑1 (MQ=255)
gCCTGTTCGGCGTTGAGGGTAATGAAATCATCGCCa < 1:1523477/36‑1 (MQ=255)
ccTGTTCGGCGTTGAGGGTAATGAAATCATCGCCac > 1:2111785/1‑36 (MQ=255)
ccTGTTCGGCGTTGAGGGTAATGAAATCATCGCCac < 1:2089493/36‑1 (MQ=255)
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ACTGACGCAGAATATCTGCTGCGCCCTGCATTGCCTGTTCGGCGTTGAGGGTAATGAAATCATCGCCAC > REL606/2342832‑2342900
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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