New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 308482 =54 (0.870)7 (0.110) 3/70 NT 14.1% coding (554/606 nt) yahD predicted transcriptional regulator with ankyrin domain
?REL606 1580990 = 31 (0.500)coding (757/1389 nt) yneI predicted aldehyde dehydrogenase

GGTATTCTGATAACGTCCGGCTACCGCCGCTTTCACCGCCAGTTCCAGATCGGCATCGTTAAGCACAATAA  >  REL606/1580955‑1581025
                                   |                                   
ggTATTCTGATAACGTCCGGCTACCGCCGATTTCAc                                     >  1:8188943/1‑36 (MQ=255)
 gTATTCTGATAACGTCCGGCTACCGCCGCTTTCAcc                                    >  1:6760975/1‑36 (MQ=255)
 gTATTCTGATAACGTCCGGCTACCGCCGCTTTCAcc                                    >  1:2812114/1‑36 (MQ=255)
   aTTCTGATAACGTCCGGCTACCGCCGCTTTCACCGc                                  >  1:7817062/1‑36 (MQ=255)
   aTTCTGATAACGTCCGGCTACCGCCGCTTTCACCGc                                  >  1:4011697/1‑36 (MQ=255)
   aTTCTAACAGCGCCCGGCTACCGCCGCTTTCACCGc                                  <  1:1518788/36‑1 (MQ=16)
    ttCTGATAACGTCCGGCTACCGCCGCTTTCACCGcc                                 >  1:3843931/1‑36 (MQ=255)
      cTGATAACGTCCGGCTACCGCCGCTTTCACCGCCAg                               >  1:2250562/1‑36 (MQ=255)
       tGATAACGTCCGGCTACCGCCGCTTTCACCGCCAGt                              >  1:5840169/1‑36 (MQ=255)
        gATAACGTCCGGCTACCGCCGCTTTCACCGCCAGtt                             >  1:6933977/1‑36 (MQ=255)
        gATAACGTCCGGCTACCGCCGCTTTCACCGCCAGtt                             >  1:3967377/1‑36 (MQ=255)
         aTAACGTCCGGCTACCGCCGCTTTCACCGCCAGTTc                            >  1:93061/1‑36 (MQ=255)
         aTAACGTCCGGCTACCGCCGCTTTCACCGCCAGTTc                            >  1:341902/1‑36 (MQ=255)
           aaCGTCCGGCTACCGCCGCTTTCACCGCCAGTTCCa                          >  1:2611700/1‑36 (MQ=255)
            aCGTCCGGCTACCGCCGCTTTCACCGCCAGTTCCAg                         >  1:3648202/1‑36 (MQ=255)
             cGTCCGGCTACCGCCGCTTTCACCGCCAGTTCCAGa                        >  1:7468835/1‑36 (MQ=255)
             cGTCCAGCTACCGCCGCTTTCACCGCCAGTTCCAGa                        >  1:2594983/1‑36 (MQ=255)
               tCCGGCTACCGCCGCTTTCACCGCCAGTTCCAGATc                      >  1:3326803/1‑36 (MQ=255)
               tCCGGCTACCGCCGCTTTCACCGCCAGTTCCAGATc                      >  1:5336056/1‑36 (MQ=255)
                ccGGCTACCGCCGCTTTCACCGCCAGTTCCAGATCg                     >  1:4770907/1‑36 (MQ=255)
                 cGGCTACCGCCGCTTTCACCGCCAGTTCCAGATCgg                    >  1:7886492/1‑36 (MQ=255)
                  ggCTACCGCCGCTTTCACCGCCAGTTCCAGATCGGc                   >  1:1269293/1‑36 (MQ=255)
                   gCTACCGCCGCTTTCACCGCCAGTTCCAGATCGGCa                  >  1:5728278/1‑36 (MQ=255)
                    cTACCGCCGCTTTCACCGCCAGTTCCAGATCGGCAt                 >  1:4905361/1‑36 (MQ=255)
                    cTACCGCCGCTTTCACCGCCAGTTCCAGATCGGCAt                 >  1:1813095/1‑36 (MQ=255)
                         gccgcTTTCACCGCCAGTTCCAGATCGGCATCGTTa            >  1:6086502/1‑36 (MQ=255)
                          ccccTTCCACCGCCAGTTCCAGATCGGCATCGTTaa           <  1:215605/33‑1 (MQ=21)
                           cgcTTTCACCGCCAGTTCCAGATCGGCATCGTTAAg          >  1:6460441/1‑36 (MQ=255)
                           cgcTTTCACCGCCAGTTCCAGATCGGCATCGTTAAg          >  1:2336166/1‑36 (MQ=255)
                             cTTTCACCGCCAGTTCCAGATCGGCATCGTTAAGca        >  1:2509152/1‑36 (MQ=255)
                              tccccCCGCCAGTTCCAGATCGGCATCGTTAAGcac       <  1:1529302‑M2/31‑1 (MQ=255)
                              tcacACCGCCAGTTCCAGATCGGCATCGTTAAGcac       <  1:7594454/33‑1 (MQ=255)
                               ttCACCGCCAGTTCCAGATCGGCATCGTTAAGcaca      >  1:5149513/1‑36 (MQ=255)
                                cccCCGCCAGTTCCAGATCGGCATCGTTAAGCACaa     <  1:6269464‑M2/33‑1 (MQ=255)
                                cccCCGCCAGTTCCAGATCGGCATCGTTAAGCACaa     <  1:5839275‑M2/33‑1 (MQ=255)
                                 ccCCGCCGGTTCCAGATCGGCATCGTTAAGCACAAt    <  1:3296095‑M2/34‑1 (MQ=255)
                                 ccCCGCCAGTTCCAGATCGGCATCGTTAAGCACAAt    <  1:2357813‑M2/34‑1 (MQ=255)
                                 ccCCGCCAGTTCCAGATCGGCATCGTTAAGCACAAt    <  1:3128728‑M2/34‑1 (MQ=255)
                                  cCCGCCAGTTCCAGATCGGCATCGTTAAGCACAATa   <  1:8366445‑M2/35‑1 (MQ=255)
                                   ccGCCAGTTCCAGATCGGCATCGTTAAGCACAATaa  >  1:3777811/1‑36 (MQ=255)
                                   |                                   
GGTATTCTGATAACGTCCGGCTACCGCCGCTTTCACCGCCAGTTCCAGATCGGCATCGTTAAGCACAATAA  >  REL606/1580955‑1581025

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG