New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2333536NA (NA)45 (0.740) 30/70 NT 54.9% noncoding (1441/1441 nt) ISRSO11 repeat region
?REL606 4415710 = 37 (0.610)coding (848/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

TTAATATAAACCGTCCAACATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTACAAACTAACAGA  >  REL606/2333501‑2333571
                                   |                                   
ttAATATAAACCGTCCAACATTATGGGGTCAGTTca                                     >  1:3533257/1‑36 (MQ=255)
ttAATATAAACCGTCCAACATTATGGGGTCAGTTca                                     <  1:1404570/36‑1 (MQ=255)
ttAATATAAACCGTCCAACATTATGGGGTCAGTTca                                     <  1:5422997/36‑1 (MQ=255)
 tAATATAAACCGTCCAACATTATGGGGTCAGTTcac                                    >  1:5865772/1‑36 (MQ=255)
  aaTATAAACCGTCCAACATTATGGGGTCAGTTcaca                                   >  1:6055545/1‑36 (MQ=255)
   atatAAACCGTCCAACATTATGGGGTCAGTTCAttg                                  >  1:747583‑M1/1‑33 (MQ=255)
   atatAAACCGTCCAACATTATGGGGCCAGTTCACAt                                  >  1:6630492/1‑36 (MQ=255)
    tataAACCGTCCAACATTATGGGGTCAGTTCAttgt                                 <  1:1513527‑M1/36‑5 (MQ=255)
    tataAACCGTCCAAAATTATGGGGTCAGTTCACATg                                 >  1:4618103/1‑36 (MQ=255)
     ataAACCGTCCAACATTATGGGGTCAGTTCAttgtt                                >  1:10284‑M1/1‑31 (MQ=255)
     ataAACCGTCCAACATTATGGGGTCAGTTCAttgtt                                >  1:5155005‑M1/1‑31 (MQ=255)
     ataAACCGTCCAACATTATGGGGTCAGTTCAttgtt                                <  1:7566017‑M1/36‑6 (MQ=255)
     ataAACCGTCCAACATTATGGGGTCAGTTCAttgtt                                <  1:5513434‑M1/36‑6 (MQ=255)
     ataAACCGTCCAACATTATGGGGTCAGTTCAttgtt                                >  1:3668716‑M1/1‑31 (MQ=255)
      taAACCGACCAACATTATGTGCTCAGTTCACATGTc                               <  1:7281161/36‑1 (MQ=37)
       aaaCCGTCCAACATTATGGGGTCAGTTCAttgttga                              <  1:2187432‑M1/36‑8 (MQ=255)
       aaaCCGTCCAACATTATGGGGTCAGTTCAttgttga                              >  1:7324920‑M1/1‑29 (MQ=255)
       aaaCCGTCCAACATTATGGGGTCAGTTCAttgttga                              <  1:6435919‑M1/36‑8 (MQ=255)
       aaaCCGTCCAACATTATGGGGTCAGTTCAttgttga                              <  1:6583454‑M1/36‑8 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCAttgttgaa                             <  1:1955429‑M1/36‑9 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCAttgttgaa                             >  1:1503796‑M1/1‑28 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCAttgttgaa                             >  1:3262614‑M1/1‑28 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCACATGTcgg                             <  1:5953202/36‑1 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCACATGTcgg                             >  1:7016682/1‑36 (MQ=255)
        aaCCGTCCAACATTATGGGGTCAGTTCACATGTcgg                             >  1:7246268/1‑36 (MQ=255)
         aCCGTCCAACATTATGGGGTCAGTTCAttgttgaac                            >  1:3017148‑M1/1‑27 (MQ=255)
           cGTCCAACATTATGGGGTCAGTTCAttgttgaactg                          >  1:5221065‑M1/1‑25 (MQ=255)
           cGTCCAACATTATGGGGTCAGTTCACATGTcggcgg                          <  1:3479083/36‑1 (MQ=255)
           cGTCCAACATTATGGGGTCAGTTCACATGTcggcgg                          >  1:6919617/1‑36 (MQ=255)
             tCCAACATTATGGGGTCAGTTCAttgttgaactgtt                        <  1:2725900‑M1/36‑14 (MQ=255)
             tCCAACATTATGGGGTCAGTTCACATGTCGGCGGCt                        <  1:4341563/36‑1 (MQ=255)
             tCCAACATTATGGGGTCAGTTCACATGTCGGCGGCt                        >  1:6118754/1‑36 (MQ=255)
             tCCAACATTATGGGGTCAGTTCACATGTCGGCGGCt                        >  1:6825541/1‑36 (MQ=255)
              ccAACATTATGGGGTCAGTTCAttgttgaattgttc                       >  1:7378758‑M1/1‑22 (MQ=255)
              ccAACATTATGGGGTCAGTTCAttgttgaactgttc                       >  1:3639146‑M1/1‑22 (MQ=255)
              ccAACATTATGGGGTCAGTTCAttgttgaactgttc                       >  1:2133263‑M1/1‑22 (MQ=255)
              ccAACATTATGGGGTCAGTTCACATGTCGGCGGCtt                       >  1:1186598/1‑36 (MQ=255)
               cAACATTATGGTGTCAGTTCAttgttgaactgttcg                      <  1:4216836‑M1/36‑16 (MQ=255)
                aaCATTATGGGGTCAGTTCAttgttgaactgttcgt                     <  1:3489465‑M1/36‑17 (MQ=255)
                aaCATTATGGGGTCAGTTCAttgttgaactgttcgt                     >  1:4991975‑M1/1‑20 (MQ=255)
                aaCATTATGGGGTCAGTTCACATGTCGGCGGCTTTc                     <  1:919338/36‑1 (MQ=255)
                 aCATTATGGGGTCAGTTCAttgttgaactgttcgtg                    <  1:3390569‑M1/36‑18 (MQ=255)
                 aCATTATGGGGTCAGTTCAttgttgaactgttcgtg                    <  1:1797768‑M1/36‑18 (MQ=255)
                 aCATTATGGGGTCAGTTCACATGTCGGCGGCTTTCt                    <  1:5476189/36‑1 (MQ=255)
                 aCATTATGGGGTCAGTTCACATGTCGGCGGCTTTCt                    >  1:2860673/1‑36 (MQ=255)
                 aCATTATGGGGTCAGTTCACATGTCGGCGGCTTTCt                    >  1:5149118/1‑36 (MQ=255)
                 aCATTATGGGGTCAGTTCACATGTCGGCGGCTTTCt                    <  1:4321890/36‑1 (MQ=255)
                  cATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTg                   <  1:723841/36‑1 (MQ=255)
                  cATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTg                   <  1:5876420/36‑1 (MQ=255)
                  cATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTg                   <  1:2525188/36‑1 (MQ=255)
                   aTTATGGGGTCAGTTCAttgttgaactgttcgtgtt                  >  1:6555366‑M1/1‑17 (MQ=255)
                   aTTATGGGGTCAGTTCAttgttgaactgttcgtgtt                  <  1:7332265‑M1/36‑20 (MQ=255)
                   aTTATGGGGTCAGTTCACATGTCGGCGGCTTTCTGa                  <  1:627752/36‑1 (MQ=255)
                    ttATGGGGTCAGTTCAttgttgaactgttcgtgttg                 >  1:191832‑M1/1‑16 (MQ=255)
                    ttATGGGGTCAGTTCAttgttgaactgttcgtgttg                 >  1:5770871‑M1/1‑16 (MQ=255)
                     tATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACt                <  1:659654/36‑1 (MQ=255)
                     tATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACt                >  1:6903286/1‑36 (MQ=255)
                      aTGGGGTCAGTTCAttgttgaactgttcgtgttggt               >  1:4504562‑M1/1‑14 (MQ=255)
                      aTGGGGTCAGTTCAttgttgaactgttcgtgttggt               <  1:4651356‑M1/36‑23 (MQ=255)
                      aTGGGGTCAGTTCACATGTCGGCGGCTTTCTGACtt               <  1:5392648/36‑1 (MQ=255)
                      aTGGGGTCAGTTCACATGTCGGCGGCTTTCTGACtt               <  1:2386466/36‑1 (MQ=255)
                       tGGGGTCAGTTCAttgttgaactgttcgtgttggta              >  1:1336236‑M1/1‑13 (MQ=255)
                       tGGGGTCAGTTCAttgttgaactgttcgtgttggta              <  1:7235297‑M1/36‑24 (MQ=255)
                       tGGGGTCAGTTCAttgttgaactgttcgtgttggta              <  1:4878960‑M1/36‑24 (MQ=255)
                       tGGGGTCAGTTCACATGTCGGCGGCTTTTTGACTTa              >  1:1404791/1‑36 (MQ=255)
                       tGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTa              >  1:7538452/1‑36 (MQ=255)
                       tGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTa              >  1:7905428/1‑36 (MQ=255)
                        ggggTCAGTTCACATGTCGGCGGCTTTCTGACtttc             >  1:4863482/1‑34 (MQ=255)
                        ggggTCAGTTCACATGTCGGCGGCTTTCTGACTTAc             <  1:7342499/36‑1 (MQ=255)
                         gggTCAGTTCAttgttgaactgttcgtgttggtagg            <  1:6847613‑M1/36‑26 (MQ=255)
                         gggTCAGTTCACATGTCGGCGGCTTTCTGACTTACa            <  1:1479348/36‑1 (MQ=255)
                          gggcAGTTCACATGTCGGCGGCTTTCTGACTTACaa           >  1:7431581/4‑36 (MQ=255)
                          ggTCAGTTCAttgttgaactgttcgtgttggtaggg           <  1:4299738‑M1/36‑27 (MQ=255)
                          ggTCAGTTCACATGTCGGCGGCTTTCTGACTTACaa           <  1:7827921/36‑1 (MQ=255)
                          ggTCAGTTCACAGGTAGGCGAATTTATGAGTTAcga           >  1:782706/1‑34 (MQ=9)
                           gTCAGTTCAttgttgaactgttcgtgttggtagggc          <  1:102029‑M1/36‑28 (MQ=255)
                           gTCAGTTCAttgttgaactgttcgtgttggtagggc          <  1:674958‑M1/36‑28 (MQ=255)
                           gTCAGTTCACATGTCGGCGGCTTTCTGACTTACaaa          <  1:4034183/36‑1 (MQ=255)
                            gcaGTACAttgttgaactgttcgtgttggtagggct         <  1:2065446‑M1/35‑29 (MQ=255)
                             cAGTTCAttgttgaactgttcgtgttggtagggctg        <  1:2497315‑M1/36‑30 (MQ=255)
                              aGTTCAttgttgaactgttcgtgttggtagggctgc       >  1:6714583‑M1/1‑6 (MQ=255)
                              aGTTCAttgttgaactgttcgtgttggtagggctgc       >  1:6937113‑M1/1‑6 (MQ=255)
                              aGTTCACATGTCGGCGGCTTTCTGACTTACAAACTa       <  1:3066646/36‑1 (MQ=255)
                               gTTCACATGTCGGCGGCTTTCTGACTTACTAACtga      >  1:4088768/1‑34 (MQ=37)
                               gTTCACATGTCGGCGGCTTTCTGACTTACAAACTaa      <  1:4717036/36‑1 (MQ=255)
                               gTTCACATGTCGGCGGCTTTCTGACTTACAAACTaa      >  1:4674445/1‑36 (MQ=255)
                               gTTCACATGTCGGCGGCTTTCTGACTTACAAACTaa      <  1:2628928/36‑1 (MQ=255)
                               gTTCACATGTCGGCGGCTTTCTGACTTACAAACTaa      <  1:5114770/36‑1 (MQ=255)
                                ttCAttgttgaactgttcgtgttggtagggctgcct     <  1:4829627‑M1/36‑33 (MQ=255)
                                ttCACATGTCGGCGGCTTTCTGACTTACAAACTAAc     >  1:3543073/1‑36 (MQ=255)
                                ttCACATGTCGGCGGCTTTCTGACTTACAAACTAAc     >  1:3159691/1‑36 (MQ=255)
                                ttCACATGTCGGCGGCTTTCTGACTTACAAACTAAc     >  1:276077/1‑36 (MQ=255)
                                 tCACATGTCGGCGGCTTTCTGACTTACAAACTAACa    <  1:2977521/36‑1 (MQ=255)
                                   attgttgaactgttcgtgttggtagggctgcctgct  >  1:4916574‑M1/1‑1 (MQ=255)
                                   attgttgaactgttcgtgttggtagggctgcctgct  >  1:5495282‑M1/1‑1 (MQ=255)
                                   acaTGTCGGCGGCTTTCTGACTTACAAACTAACAGa  <  1:5935500/36‑1 (MQ=255)
                                   |                                   
TTAATATAAACCGTCCAACATTATGGGGTCAGTTCACATGTCGGCGGCTTTCTGACTTACAAACTAACAGA  >  REL606/2333501‑2333571

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG