Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,693,740 | C→A | 27.4% | intergenic (‑492/‑176) | stpA ← / → ygaW | DNA binding protein, nucleoid‑associated/predicted inner membrane protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,693,740 | 0 | C→A | 27.4% | 4.6 ‑4.0 0.0 | 23 | intergenic (‑492/‑176) | stpA/ygaW | DNA binding protein, nucleoid‑associated/predicted inner membrane protein |
Reads supporting (aligned to +/- strand): new base (1/6): ref base (12/4): total (13/10) | ||||||||||
Fisher's exact test strand distribution p-value = 1.86e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAA > REL606/2693705‑2693775
|
ataaatCATATCGGCATGTAAAAATCCACAATGTAc > 1:150855/1‑36 (MQ=255)
taaatCATATCGGCATGTAAAAATCCACAATGTACa > 1:6664607/1‑36 (MQ=255)
aaatCATATCGGCATGTAAAAATCCACAATGTACaa < 1:6582357/36‑1 (MQ=255)
aatCATATCGGCATGTAAAAATCCACTATGTAAaaa > 1:1204927/1‑36 (MQ=37)
aatCATATCGGCATGTAAAAATCCACAATGTACaaa < 1:2495082/36‑1 (MQ=255)
atCATATCGGCATGTAAAAATCCACAATGTACaaaa > 1:6301091/1‑36 (MQ=255)
tCATATCGGCATGTAAAAATCCACAATGTACaaaaa < 1:1624356/36‑1 (MQ=255)
atatCGGCATGTAAAAATCCACAATGTACAAAAAAc > 1:1362861/1‑36 (MQ=255)
atatCGGCATGTAAAAATCCACAATGTACAAAAAAc > 1:2547456/1‑36 (MQ=255)
tatCGGCATGTAAAAATCCACAATGTACAAAAAACg < 1:4466809/36‑1 (MQ=255)
atCGGCATGTAAAAATCCACAATGTACAAAAAACGa > 1:4734574/1‑36 (MQ=255)
atCGGCATGTAAAAATCCACAATGTACAAAAAACGa > 1:6376420/1‑36 (MQ=255)
ggCATGTAAAAATCCACAATGTACAAAAAACGAGcc > 1:7884255/1‑36 (MQ=255)
cATGTAAAAATCCACAATGTACAAAAAACGAGCCGt > 1:856708/1‑36 (MQ=255)
tgaaaaaaCCAAAAATGTAAAAAAAACGAGCCGTTa < 1:2500244/33‑1 (MQ=16)
tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTa > 1:5433211/1‑36 (MQ=255)
gTAAAAATCCACAATGTACAAAAAACGAGCCGTTAc > 1:2952181/1‑36 (MQ=255)
aaaaaCCCAAAATGTAAAAAAAACGAGCCGTTACgg < 1:3245953/36‑1 (MQ=25)
aaaaTCAAAAATTTAAAAAAAACGAGCCGTTACGGa < 1:4672325/36‑1 (MQ=19)
aaTCCACAATGTACAAAAAACGAGCCGTTACGGAat > 1:7552336/1‑36 (MQ=255)
aTCCACAATGTACAAAAAACGAGCCGTTACGGAata > 1:5399545/1‑36 (MQ=255)
aaaTGAAAAAAAAACGAGCCGTTACGGAATATTTTa < 1:3505840/35‑1 (MQ=37)
aaTGTAAAAAAAACGAGCCGTTACGGAATATTTTAt < 1:1660572/36‑1 (MQ=255)
tGTAAAAAAAACGAGCCGTTACGGAATATTTTATCt < 1:7796493/36‑1 (MQ=255)
cAAAAAACGAGCCGTTACGGAATATTTTATCTACaa > 1:1653484/1‑36 (MQ=255)
|
ATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAA > REL606/2693705‑2693775
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|