Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 166,265 | C→A | 28.4% | A437E (GCA→GAA) | hrpB → | predicted ATP‑dependent helicase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 166,265 | 0 | C→A | 28.4% | 13.6 ‑4.4 0.0 | 38 | 1310 | hrpB | predicted ATP‑dependent helicase |
Reads supporting (aligned to +/- strand): new base (2/9): ref base (17/9): total (20/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.28e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGA > REL606/166230‑166300
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tAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGc < 1:4532830/36‑1 (MQ=255)
tAGCGCGAAGAACGACGACGAAGCTGCTACAGCGGc > 1:1405334/1‑36 (MQ=255)
aGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCa > 1:7667788/1‑36 (MQ=255)
aGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCa < 1:1800806/36‑1 (MQ=255)
aGCGCGAAGAACGACGACGAAGCTGCTACAGCGGCa > 1:7639718/1‑36 (MQ=255)
cgcgAAGAACGACGACGAAGCTGCTACCGCGGCaaa < 1:5297081/36‑1 (MQ=255)
gcgAAGAACGACGACGCCGCTGCTACCGCGGTaaaa > 1:694541/1‑36 (MQ=25)
gcgAAGAACGACGACGAAGCTGCTACCGCGGCaaaa > 1:4687896/1‑36 (MQ=255)
gcgAAGAACGACGACGAAGCTGCTACCGCGGCaaaa > 1:480786/1‑36 (MQ=255)
gcgAAGAACGACGACGAAGCTGCTACCGCGGAaaaa > 1:1005013/1‑36 (MQ=255)
cgAAGAACGACGACGAAGCTGCTACCGCGGCaaaaa > 1:7703911/1‑36 (MQ=255)
cgAAGAACGACGACGAAGCTGCTACCGCGGCaaaaa > 1:6040725/1‑36 (MQ=255)
aagaaCGACGACGAAGCTGCTACCGCGGCAAAAAtt > 1:6719919/1‑36 (MQ=255)
agaaCGAAGACGAAGCTGCTACCGCGGCAAAAATTg < 1:2209538/36‑1 (MQ=255)
aaCGACGACGAAGCTGCTACCGCGGCAAAAATTgcc < 1:3766228/36‑1 (MQ=255)
acgacgacgAAGCTGCTAACGCGGCAAAAATTgccg > 1:73638/1‑36 (MQ=255)
cgacgaggaAGCTGCTACCGCGGCAAAAATTgccgc < 1:6010025/36‑1 (MQ=255)
cgacgacgaAGCTGCTACCGCGGCAAAAATTgccgc < 1:1786929/36‑1 (MQ=255)
gacgacgaAGCTGCTACCGCGGCAAAAATTgccgcc > 1:6554132/1‑36 (MQ=255)
gacgacgaAGCTGCTACCGCGGCAAAAATTgccgcc < 1:1150805/36‑1 (MQ=255)
gacgacgaAGCTGCTACCGCGGAAAAAATTgccgcc < 1:4116673/36‑1 (MQ=255)
acgacgaAGCTGCTACCGCGGCAAAAATTGCCGCCa > 1:3574043/1‑36 (MQ=255)
gacgaAGCTGCTACCGCGGAAAAAATTGCCGCCAtt > 1:319408/1‑36 (MQ=255)
acgaAGCTGCTACCGCGGCAAAAATTGCCGCCATtc < 1:921323/36‑1 (MQ=255)
cgaAGCTGCTACCGCGGCAAAAATTGCCGCCATtct > 1:2846673/1‑36 (MQ=255)
caaaGCTGCTACCGCGGAAAAAATTGCCGCCATtct < 1:1052397/34‑1 (MQ=37)
gaAGCTGCTACCGCGGCAAAAATTGCCGCCATtctc < 1:312639/36‑1 (MQ=255)
aaGCTGCAACCGCGGAAAAAATTGCCGCCATTCTCg < 1:571452/36‑1 (MQ=25)
aaGCTCCTACCGCGGAAAAAATTGCCGCCATTCTCg < 1:3714408/36‑1 (MQ=25)
gctactACCGCGGAAAAAATTGCCGCCATTCTCGaa < 1:5515183/36‑1 (MQ=25)
ctgctACCGCGGAAAAAATTGCCGCCATTCTCGAag < 1:138866/36‑1 (MQ=255)
gcctACCGCGGAAAAAATTGCCGCCATTCTCGAaga < 1:7065856/34‑1 (MQ=37)
ctACCGCGGCAAAAATTGCCGCCATTCTCGCAGAgc > 1:3639853/1‑36 (MQ=255)
acccGCGGAAAAACTTGCCGCCATTCTCGAAGAgcc < 1:3691362/34‑1 (MQ=37)
aaCCGCGAAAAAAATTGCCGCCATTCTCGAAGAgcc < 1:6814039/35‑1 (MQ=37)
aCCGCGGCAAAAATTGCCGCCATTCTCGAAGAgccg > 1:1595632/1‑36 (MQ=255)
cgcgGCAAAAATTGCCGCCATTCTCGAAGAgccgcc > 1:6445544/1‑36 (MQ=255)
gcgGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCa > 1:2103055/1‑36 (MQ=255)
cgGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCAc > 1:3632144/1‑36 (MQ=255)
ggCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACg > 1:6894041/1‑36 (MQ=255)
cAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGa > 1:2201127/1‑36 (MQ=255)
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TAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGA > REL606/166230‑166300
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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