Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,369,866 | 1 | .→G | 4.8% | 3.5 ‑2.8 0.0 | 63 | coding (138/390 nt) | rpsK | 30S ribosomal protein S11 |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (3/0): ref base (22/38): total (25/38) | ||||||||||
Fisher's exact test strand distribution p-value = 5.79e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GATTTGCGAGAACCACGGAAACCGGAACCACCGGCT.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGT > REL606/3369831‑3369901
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gATTTGCGAGAACCACGGAAACCGGAACCACCGGCt > 1:1062321/1‑36 (MQ=255)
gATTTGCGAGAACCACGGAAACCGGAACCACCGGCt > 1:3040418/1‑36 (MQ=255)
gATTTGCGAGAACCACGGAAACCGGAACCACCGGCt < 1:601451/36‑1 (MQ=255)
aTTTGCGAGAACCACGGAAACCGGAACCACCGGCT.g < 1:3236394/36‑1 (MQ=255)
aTTTGCGAGAACCACGGAAACCGGAACCACCGGCT.g < 1:2835015/36‑1 (MQ=255)
aTTTGCGAGAACCACGGAAACCGGAACCACCGGCT.g < 1:649459/36‑1 (MQ=255)
aTTTGCGAGAACCACGGAAACCGGAACCACCGGCT.g < 1:2503717/36‑1 (MQ=255)
tttGCGAGACCCACGGAAACCGGAACCACCGGCT.Gt < 1:2864632/36‑1 (MQ=255)
tttGCGAGAACCACGGAAACCGGAACCACCGGCT.gg > 1:5190697/1‑35 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.ggt > 1:1089697/1‑34 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.ggt > 1:492362/1‑34 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.ggt > 1:3708655/1‑34 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.ggt > 1:1711575/1‑34 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.Gtt < 1:2545415/36‑1 (MQ=255)
ttGCGAGAACCACGGAAACCGGAACCACCGGCT.Gtt > 1:7536861/1‑36 (MQ=255)
ttGCGACAACCACTGAAACCAGAACCACCGGCT.Gtt < 1:2226042/36‑1 (MQ=25)
tGCGAGAACCACGGAAACCGGAACCACCGGCT.GTTg < 1:2110040/36‑1 (MQ=255)
tGCGAGAACCACGGAAACCGGAACCACCGGCT.GGTg > 1:7220869/1‑36 (MQ=255)
gCGAGAACCACGGAAACCGGAACCACCGGCT.GTTGc < 1:4847609/36‑1 (MQ=255)
cGAGAACCACGGAAACCGGAACCACCGGCT.GTTGcc < 1:3233149/36‑1 (MQ=255)
cGAGAACCACGGAAACCGGAACCACCGGCT.GGTggc > 1:6281746/1‑34 (MQ=38)
gagaACCACGGAAACCGGAACCACCGGCTGGTTGcc > 1:3869945/1‑36 (MQ=37)
gagaACCACGGAAACCGGAACCACCGGCT.GTTGccc < 1:7281480/36‑1 (MQ=255)
gagaACCACGGAAACCGGAACCACCGGCT.GTTGccc < 1:3374064/36‑1 (MQ=255)
gagaACCACGGAAACCGGAACCACCGGCT.GTTGccc < 1:5755020/36‑1 (MQ=255)
gagaACCACGGAAACCGGAACCACCGGCT.GGTgggc > 1:253822/1‑33 (MQ=37)
gagaACCACGGAAACCGGAACCACCGGCT.GGTGgcc > 1:2798554/1‑36 (MQ=37)
gagaACCACGGAAACCGGAACCACCGGCT.GGGGccc > 1:7040780/1‑36 (MQ=37)
agaACCACGGAAACCGGAACCACCGGCT.GGTGgccc > 1:374119/1‑35 (MQ=37)
agaACCACGGAAACCGGAACCACCGGCT.GGTGgccc > 1:7640119/1‑35 (MQ=37)
gaACCACGGAAACCGGAACCACCGGCT.GTTGcccaa < 1:142914/36‑1 (MQ=255)
gaACCACGGAAACCGGAACCACCGGCT.GTTGcccaa < 1:4264597/36‑1 (MQ=255)
aaCCACGGAAACCGGAACCACCGGCTGGTGGcccaa > 1:6701119/1‑36 (MQ=25)
aaCCACGGAAACCGGAACCACCGGCT.GTTGcccaac < 1:3435631/36‑1 (MQ=255)
aaCCACGGAAACCGGAACCACCGGCT.GGTTccccac > 1:1431866/1‑36 (MQ=25)
aCCACTGAAACCGGAACCACCGGCT.TTTGcccaacc < 1:2795069/36‑1 (MQ=37)
aCCACGGAAACCGGAACCACCGGCT.GTTGcccaacc < 1:6159247/36‑1 (MQ=255)
cACGGAAACCGGAACCACCGGCTGGTTGcccaccca > 1:6607893/1‑35 (MQ=25)
cACGGAAACCGGAACCACCGGCT.GTTGcccaaccca < 1:6263321/36‑1 (MQ=255)
cGGAAACCGGAACCACCGGCT.GTTTctccacccccc > 1:3396065/1‑33 (MQ=19)
cGGAAACCGGAACCACCGGCT.GGTGGccaaccccac > 1:629487/1‑36 (MQ=25)
ggAAACCGGAACCACCGGCT.GTTGCCCAACCCAAcg < 1:3567423/36‑1 (MQ=255)
ggAAACCGGAACCACCGGCT.GTTGCCCAACCCAAcg < 1:6366466/36‑1 (MQ=255)
ggAAACCGGAACCACCGGCT.GTTGCCCAACCCAAcg < 1:7321224/36‑1 (MQ=255)
ggAAACCGGAACCAACGGCT.GGTGGccaacccaaca > 1:4452172/1‑35 (MQ=25)
gAAACCGGAACCACCGGCT.GTTGCCCAACCCAAcgc < 1:4398495/36‑1 (MQ=255)
aaaaCCGGAACCACCGGCT.GTTGCCCAACCCAAcgc < 1:2647556/35‑1 (MQ=255)
aaaCCGGAACCACCGGCT.GTTGCCCAACCCAAcgcg < 1:5137226/36‑1 (MQ=255)
aaCCGGAACCACCGGCT.GTTGCCCAACCCAACGCGt < 1:1446389/36‑1 (MQ=255)
aCCGGAACCACCGGCT.GTTGCCCAACCCAACGCGtt < 1:5730726/36‑1 (MQ=255)
cGGAACCACCGGCT.GTTGCCCAACCCCACCCGTCAc > 1:1737102/1‑36 (MQ=37)
ggAACCACCGGCT.GTTGCCCCACCCCACGCCGTAcc > 1:2970484/1‑36 (MQ=19)
ggAACCACCGGCT.GTTGCCCAACCCAACGCGTTAcc < 1:7823464/36‑1 (MQ=255)
ggAACCACCGGCT.GTTGCCCAACCCAACGCGTTAcc < 1:4604145/36‑1 (MQ=255)
ggAACCACCGGCT.GGTGCCCCAACCCACCCGTTAcc > 1:2254318/1‑36 (MQ=12)
gAACCACCGGCT.GTTGCCCAACCCAACGCGTTAccc < 1:5513277/36‑1 (MQ=255)
gAACCACCGGCT.GTTGCCCAACCCAACGCGTTAccc < 1:185215/36‑1 (MQ=255)
aaCCACCGGCT.GTTGCCCAACCCAACGCGTTACCCt < 1:304607/36‑1 (MQ=255)
aaCCACCGGCT.GTTGCCCAACCCAACGCGTTACCCt < 1:4672883/36‑1 (MQ=255)
accaccGGCT.GTTGCCCAACCCCACGCGTTACCCTg > 1:4819230/1‑36 (MQ=255)
accaccGGCT.GTTGCCCAACCCAACGCGTTACCCTg < 1:4805006/36‑1 (MQ=255)
ccaccGGCT.GTTGCCCAACCCAACGCGTTACCCTGa < 1:3546594/36‑1 (MQ=255)
caccGGCT.GTTGCCCAACCCAACGCGTTACCCTGAc < 1:2319098/36‑1 (MQ=255)
caccGGCT.GTTGCCCAACCCAACGCGTTACCCTGAc < 1:4532716/36‑1 (MQ=255)
accGGCT.GTTGCCCAACCCAACGCGTTACCCTGACg < 1:7243759/36‑1 (MQ=255)
accGGCT.GTTGCCCAACCCAACGCGTTACCCTGACg < 1:7316621/36‑1 (MQ=255)
cGGCT.GTTGCCCAACCCAACGCGTTACCCTGACGAt > 1:6594164/1‑36 (MQ=255)
cGGCT.GTTGCCCAACCCAACGCGTTACCCTGACGAt < 1:4334675/36‑1 (MQ=255)
cGGCT.GTTGCCCAACCCAACGCGTTACCCTGACGAt < 1:257300/36‑1 (MQ=255)
ggCT.GTTGCCCAACCCAACGCGTTACCCTGACGATc > 1:5262285/1‑36 (MQ=255)
ggCT.GTTGCCCAACCCAACGCGTTACCCTGACGATc > 1:4263619/1‑36 (MQ=255)
ggCT.GTTGCCCAACCCAACGCGTTACCCTGACGATc > 1:2805122/1‑36 (MQ=255)
gCT.GTTGCCCAACCCAACGCGTTACCCTGACGATCa > 1:7361149/1‑36 (MQ=255)
cT.GTTGCCCAACCCAACGCGTTACCCTGACGATCAg < 1:7781840/36‑1 (MQ=255)
cT.GTTGCCCAACCCAACGCGTTACCCTGACGATCAg > 1:7929490/1‑36 (MQ=255)
t.GTTGCCCAACCCAACGCTTTACTCTGTCGATCAGt < 1:2779217/36‑1 (MQ=18)
t.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGt < 1:5004128/36‑1 (MQ=255)
t.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGt < 1:4665354/36‑1 (MQ=255)
t.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGt > 1:7224747/1‑36 (MQ=255)
t.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGt > 1:1942597/1‑36 (MQ=255)
t.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGt < 1:1286848/36‑1 (MQ=255)
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GATTTGCGAGAACCACGGAAACCGGAACCACCGGCT.GTTGCCCAACCCAACGCGTTACCCTGACGATCAGT > REL606/3369831‑3369901
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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