Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546952–547700 | 555923–555877 | 8178–8972 | 24 [20] | [1] 87 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 1 (0.020) | 59 (1.080) | 34/62 | NT | 98.3% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
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atcatACACTAGATCAGTAAGTTGGCAGCATCACCc > 1:5899385‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCTCCc > 1:28615‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:3930267‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:4076931‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:2689747‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:4412924‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:5102647‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:2366857‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:6460618‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:1086284‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:8185773‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:7919987‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:7854392‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:7839281‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc > 1:7101237‑M2/1‑35 (MQ=255)
atcatACACTAAATCAGTAAGTTGGCAGCATCACCc < 1:185256‑M2/36‑2 (MQ=255)
atcatACACTAAATCAGTAAGGTGGCAGCATCACCc < 1:7068737‑M2/36‑2 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca > 1:4346446‑M2/1‑34 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca > 1:4255697‑M2/1‑34 (MQ=255)
tcatACACTAAATCAGTAAGTTGGCAGCATCACCca < 1:385865‑M2/36‑3 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa > 1:630722‑M2/1‑33 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa > 1:6609360‑M2/1‑33 (MQ=255)
catACACTAAATCAGTAAGTTGGCAGCATCACCcaa < 1:4380691‑M2/36‑4 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:5524795‑M2/36‑5 (MQ=255)
atACACTAAATCAGTAAGTTGGCAGCATCACCcaaa < 1:3741553‑M2/36‑5 (MQ=255)
tACACTAAATCAGTAAGTTGGCAGCATCACCcaaac < 1:2053384‑M2/36‑6 (MQ=255)
acacTAAATCAGTAAGTTGGCAGCATGACCcaaacg < 1:7071116‑M2/36‑7 (MQ=255)
acacTAAATCAGTAAGTTGGCAGCATCACCcaaacg < 1:925918‑M2/36‑7 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc < 1:4206068‑M2/36‑8 (MQ=255)
cacTAAATCAGTAAGTTGGCAGCATCACCcaaacgc < 1:322216‑M2/36‑8 (MQ=255)
cacTAAACCAGTAAGTTGGCAACATCACCCaaacgc < 1:4545032/36‑4 (MQ=11)
acTAAATCAGTAAGTTGGCAGCATCACCcaaacgcg < 1:2947633‑M2/36‑9 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca < 1:8212636‑M2/36‑11 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACCcaaacgcgca < 1:1797031‑M2/36‑11 (MQ=255)
tAAATCAGTAAGTTGGCAGCATCACAcaaacgcgca < 1:6098238‑M2/36‑11 (MQ=255)
aaaTCAGTAAGTTGGCAGCATCACCcaaacgcgcat < 1:6125692‑M2/36‑12 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc < 1:5185725‑M2/36‑13 (MQ=255)
aaTCAGTAAGTTGGCAGCATCACCcaaacgcgcatc < 1:2600843‑M2/36‑13 (MQ=255)
aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca < 1:7245457‑M2/36‑14 (MQ=255)
aTCAGTAAGTTGGCAGCATCACCcaaacgcgcatca > 1:8204109‑M2/1‑23 (MQ=255)
aTCAGTAAGTTGGCAGCATCACCCAAATATCCTtgt < 1:5089213/36‑1 (MQ=255)
tCAGTAAGTTGGCAGCATCACCCAAATATCCTtgtg < 1:4083757/36‑1 (MQ=255)
cAGTAAGTTGGCAGCATCACCcaaacgcgcatcagg > 1:5236137‑M2/1‑21 (MQ=255)
cAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGa < 1:5029905/36‑1 (MQ=255)
cAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGa < 1:8199012/36‑1 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt > 1:7740360‑M2/1‑20 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt > 1:6143101‑M2/1‑20 (MQ=255)
aGTAAGTTGGCAGCATCACCcaaacgcgcatcaggt > 1:1150883‑M2/1‑20 (MQ=255)
gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg > 1:7138902‑M2/1‑19 (MQ=255)
gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg < 1:6838838‑M2/36‑18 (MQ=255)
gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg > 1:1305260‑M2/1‑19 (MQ=255)
gTAAGTTGGCAGCATCACCcaaacgcgcatcaggtg < 1:5728958‑M2/36‑18 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc < 1:7714341‑M2/36‑19 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc > 1:1862891‑M2/1‑18 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc < 1:550628‑M2/36‑19 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc > 1:5730491‑M2/1‑18 (MQ=255)
tAAGTTGGCAGCATCACCcaaacgcgcatcaggtgc > 1:3738787‑M2/1‑18 (MQ=255)
aGTTGGCAGCATCACCcaaacgcgcatcaggtgcaa < 1:8413599‑M2/36‑21 (MQ=255)
gTTGTCAGCATCACCCAAATATCCTTGTGATAatat < 1:1325767/36‑1 (MQ=255)
gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac < 1:4652621‑M2/36‑22 (MQ=255)
gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac < 1:7264574‑M2/36‑22 (MQ=255)
gTTGGCAGCATCACCcaaacgcgcatcaggtgcaac < 1:5720617‑M2/36‑22 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca < 1:6695932‑M2/36‑23 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgcaaca > 1:3673814‑M2/1‑14 (MQ=255)
ttGGCAGCATCACCcaaacgcgcatcaggtgaaaca < 1:885786‑M2/36‑23 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat < 1:5399559‑M2/36‑24 (MQ=255)
tGGCAGCATCACCcaaacgcgcatcaggtgcaacat > 1:4757901‑M2/1‑13 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:2457432‑M2/36‑25 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:5038146‑M2/36‑25 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:4620746‑M2/36‑25 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata > 1:7213344‑M2/1‑12 (MQ=255)
ggCAGCATCACCcaaacgcgcatcaggtgcaacata < 1:1016159‑M2/36‑25 (MQ=255)
gcagcaTCACCcaaacgcgcatcaggtgcaacatac > 1:8434819‑M2/1‑11 (MQ=255)
agcaTCACCcaaacgcgcatcaggtgcaacatacat < 1:6463915‑M2/36‑28 (MQ=255)
agcaTCACCcaaacgcgcatcaggtgcaacatacat < 1:6894830‑M2/36‑28 (MQ=255)
agcaTCACCcaaacgcgcatcaggtgcaacatacat < 1:2174424‑M2/36‑28 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt > 1:4238016‑M2/1‑8 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt > 1:495220‑M2/1‑8 (MQ=255)
gcaTCACCcaaacgcgcatcaggtgcaacatacatt < 1:5970938‑M2/36‑29 (MQ=255)
caTCACCcaaacgcgcatcaggtgcaacatacatta < 1:6197517‑M2/36‑30 (MQ=255)
aTCACCcaaacgcgcatcaggtgcaacatacattaa < 1:7735116‑M2/36‑31 (MQ=255)
aTCACCcaaacgcgcatcaggtgcaacatacattaa > 1:2106613‑M2/1‑6 (MQ=255)
cACCcaaacgcgcatcaggtgcaacatacattaata < 1:1543643‑M2/36‑33 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:2646675‑M2/1‑3 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:1124218‑M2/1‑3 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:2050442‑M2/1‑3 (MQ=255)
aCCcaaacgcgcatcaggtgcaacatacattaataa > 1:5905836‑M2/1‑3 (MQ=255)
cccaaacgcgcatcaggtgcaacatacattaataaa < 1:5744156‑M2/36‑35 (MQ=255)
ccaaacgcgcatcaggtgcaacatacattactaaat > 1:1763430‑M2/1‑1 (MQ=255)
ccaaacgcgcatcaggtgcaacatacattaataaat > 1:4345663‑M2/1‑1 (MQ=255)
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ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAATATCCTTGTGATAATATTTATTATAAAGTCT > REL606/2035059‑2035128
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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