Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 523,481 | A→G | 16.2% | T293A (ACC→GCC) | arcC → | predicted carbamate kinase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 523,481 | 0 | A→G | 16.2% | 7.2 ‑3.1 ‑0.0 | 53 | 877 | arcC | predicted carbamate kinase |
Reads supporting (aligned to +/- strand): new base (9/0): ref base (27/17): total (36/17) | ||||||||||
Fisher's exact test strand distribution p-value = 4.42e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.92e-01 |
CGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGCA > REL606/523446‑523516
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cgcgAATTGAAGAGACGCTGGCGGGCGAAGCGGGGa < 1:7632284/36‑1 (MQ=255)
gcgAATTGAAGAGACGCTGGCGGGCGAAGCGGGGAc < 1:5483248/36‑1 (MQ=255)
gAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCt < 1:3653592/36‑1 (MQ=255)
gAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCt < 1:5365619/36‑1 (MQ=255)
aTTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGt < 1:3824386/36‑1 (MQ=255)
ttGAAGAGACGCTGGCGGGGGGAGCGGGGGCCTGtg > 1:5346412/1‑35 (MQ=21)
ttGAAGAGACGCTGGCGGGCGAAGCGGGGGGCTGtg > 1:6085966/1‑35 (MQ=25)
tGAAGAGACGCTGGCGGGCGAAGCGGGGGGCTGtgg > 1:2741591/1‑34 (MQ=25)
tGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTAt < 1:7406939/36‑1 (MQ=255)
gAAGAGACGCTGGCGGGCGGAAAGGGGGGCTGTAtt > 1:2953359/1‑36 (MQ=12)
aaGAGACGCTGGCGGGCGAAACGGGGGCCTGTAttt > 1:7346812/1‑36 (MQ=37)
agagACGCTGGCGGGCGCAGCGGGGGCATGTCtttt > 1:6944666/1‑35 (MQ=16)
agagAAGCTGGCGGGAGAAGGGGGGAACTGTAtttt > 1:7395331/1‑35 (MQ=16)
gagaCGCTTGCGGGCGAAGCGGGGACCTGTATTTCg < 1:7558609/36‑1 (MQ=255)
agaCGCTGGCGGGCGAAGCGGGGACCTGTATTTCGc < 1:5584509/36‑1 (MQ=255)
gaCGCTGGCGGGCGAAGCGGGGGGCTGTATTTCGCt > 1:178563/1‑36 (MQ=37)
gaCGCTGGCGGGCGAAGCGGGGGCCTGTATTTCggt > 1:2489521/1‑34 (MQ=38)
gaCGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCt < 1:4123757/36‑1 (MQ=255)
gaCGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCt < 1:7897241/36‑1 (MQ=255)
cTGGCGTGCGAAGCGGGGACCTGTATTTCGCTGtcg > 1:3536813/1‑34 (MQ=38)
cTGGCGGGCGAAGCGGGGATCTGTATTTCGCTGttg > 1:139660/1‑34 (MQ=38)
cTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAg > 1:3697839/1‑36 (MQ=255)
cTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAg < 1:7860560/36‑1 (MQ=255)
tGGCGGGCGGAGCGGGGGACTGTTTTTTGCTTTAGt > 1:2186773/1‑36 (MQ=9)
tGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGt < 1:3875114/36‑1 (MQ=255)
tGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGt < 1:5443076/36‑1 (MQ=255)
ggcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtg < 1:4855287/36‑1 (MQ=255)
ggcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtg > 1:6633482/1‑36 (MQ=255)
gcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtga > 1:3643547/1‑36 (MQ=255)
gcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtga > 1:5392972/1‑36 (MQ=255)
cgggcgAAGCGGGGACCTGTATTTCGCTGTAGtgat > 1:1801235/1‑36 (MQ=255)
gggcgAAGCGGGGACCTGTATTTCGCTGTAGtgatg < 1:6668535/36‑1 (MQ=255)
ggcgAAGCGGGGACCTGTATTGCGCTGTAGtgatga < 1:2182395/36‑1 (MQ=255)
gcgAAGCGGGGACCTGTATTTCGCTGTAGtgatggg > 1:6385518/1‑34 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga > 1:5769312/1‑36 (MQ=255)
gAAGCGGGGACCTGTGTTTCGCTGTAGTGATGagag > 1:7203515/1‑36 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:7746257/1‑36 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:7202978/1‑36 (MQ=255)
gAAGCGGGAACCTGTATATAGCTGTAGTGATGagag > 1:6729063/1‑36 (MQ=37)
aaGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGc > 1:1984201/1‑36 (MQ=255)
aGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCa > 1:1207146/1‑36 (MQ=255)
aGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCa > 1:4960233/1‑36 (MQ=255)
gCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCAt > 1:2801336/1‑36 (MQ=255)
cGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATc < 1:2803196/36‑1 (MQ=255)
cGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATc > 1:645286/1‑36 (MQ=255)
ggggACCTGTATTTCGCTGTAGTGATGAGAGCATcc > 1:1533584/1‑36 (MQ=255)
ggggACCTGTATTTCGCTGTAGTGATGAGAGCATcc > 1:4724986/1‑36 (MQ=255)
gggACCTGTATTTCGCTGTAGTGATGAGAGCATCCg < 1:7006969/36‑1 (MQ=255)
gggACCTGTATTTCGCTGTAGTGATGAGAGCATCCg > 1:1918717/1‑36 (MQ=255)
gggACCTGTATTTCGCTGTAGTGATGAGAGCATCCg > 1:2710933/1‑36 (MQ=255)
gggACCTGTATTTCGCTGTAGTGATGAGAGCATCCg > 1:7587098/1‑36 (MQ=255)
gggACCTGTATTTATCTGGAGTGATGTGAGCATGCg > 1:5896674/1‑36 (MQ=16)
ggACCTGTATTTCGCTGTAGGGATGAGAGCATCCgg > 1:3504323/1‑36 (MQ=255)
gACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGc > 1:383983/1‑36 (MQ=255)
aCCGGTATTTCGCTGGAGTGATGAGAGCATCCGGCa > 1:6130434/1‑36 (MQ=37)
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CGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGCA > REL606/523446‑523516
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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