Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,259,415 | A→C | 17.5% | W11G (TGG→GGG) | alkB ← | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,259,415 | 0 | A→C | 17.5% | 3.9 ‑3.3 ‑0.0 | 42 | 31 | alkB | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (20/14): total (28/14) | ||||||||||
Fisher's exact test strand distribution p-value = 3.68e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 |
AAATTACCGCTCCAGCCGCCAGTGGCTCTTGCCACGGTTCACCATCGGCAAACAGATCCAACATTACCT > REL606/2259382‑2259450
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aaaTTACCGCTCCAGCCGCCAGTGGCTCTTGCCACg < 1:1016818/36‑1 (MQ=255)
aaaTTACCGCTCCAGCCGCCAGTGGCTCTTGCCACg > 1:2716187/1‑36 (MQ=255)
aaTTCCCTCTCAAGCCGCCAGTGGCTCTTGCCACgg < 1:7132790/36‑1 (MQ=25)
aaTTACCGCTCCAGCCGCCAGTGGCTCTTTCCCCgg > 1:5812974/1‑36 (MQ=37)
ttcccGCCCCAGCCGCCAGTGGCTCTTGCCACGGtt < 1:4685562/33‑1 (MQ=37)
ttACCGCTCCAGCCGCCAGTGGCTCTTTCCACGGtt > 1:7486460/1‑36 (MQ=255)
tACCGCTCCAGCCGCCAGTGGCTCTTTCCCCGGTTc > 1:2535325/1‑36 (MQ=37)
cccGCTCCAGCCGCCAGTGGCTCTTGCCACGGTTCa < 1:5077996/35‑1 (MQ=255)
cGCTCCAGCCGCCAGTGGCTCTTGCCACGGTTCAcc > 1:4011981/1‑36 (MQ=255)
gCTCCAGCCGCCAGTGGCTCTTTCCCCGGTTTACCa > 1:5914554/1‑36 (MQ=21)
gCTCCAGCCGCCAGTGGCTCTTTCCCCGGGTCACCa > 1:6934258/1‑36 (MQ=21)
gCTCCAGCCGCCAGTGGCTCTTGCCACGGTTCACCa > 1:4635231/1‑36 (MQ=255)
gCTCCAGCCGCCAGTGGCTCCTGCCCCGGTTCCccc > 1:3360645/1‑35 (MQ=21)
ccccAGCCGCCAGTGGCTCTTGCCACGGTTCACCAt < 1:3880925/34‑1 (MQ=255)
cTCCAGCCGCCAGTGGCTCCTTCCACGGTTCACCAt > 1:7121401/1‑36 (MQ=37)
tCCAGCCGCCAGTGGCTCTTGCCCCGGTTCCCCATc > 1:2466581/1‑36 (MQ=37)
cccAGCCGCCAGTGGCTCTTGCCACGGTTCACCATc < 1:4954000/35‑1 (MQ=255)
cccAGCCGCCAGTGGCTCTTGCCACGGTTCACCATc < 1:4779583/35‑1 (MQ=255)
ccAGCCGCCAGTGGCTCTTGCCACGGTTCACCATCg < 1:4666278/36‑1 (MQ=255)
ccAGCCGCCAGTGGCTCTTACCACGGTTCACCATCg > 1:2183084/1‑36 (MQ=255)
gccgccAGTGGCTCTTGCCCCGGTTCACCATCGGCa > 1:647863/1‑36 (MQ=255)
ccgccAGTGGCTCCTGCCACCGTTCACCATCGGCaa > 1:1460853/1‑36 (MQ=25)
cgccAGTGGCTCTTTCCACGGTTCACCATCGGCaaa > 1:3394238/1‑36 (MQ=255)
ccAGTGGCTCTTGCCCCCGTTCACCATCGGCAAACa > 1:2481950/1‑36 (MQ=37)
ccAGTGGCTCTTGCCACGGTTCACCATCGGCAAACa < 1:7339692/36‑1 (MQ=255)
ccAGTGGCTCTTGCCACGGTTCACCATCGGCAAACa < 1:1367337/36‑1 (MQ=255)
cAGTGGCTCTTGCCACGGTTCACCATCGGCAAACAg < 1:1295934/36‑1 (MQ=255)
tGGCTCTTGCCACGGTTCACCATCGGCAAACAGATc < 1:5503876/36‑1 (MQ=255)
gCTCTTGCCACGGTTCACCATCGGCAAACAGATCCa > 1:3899254/1‑36 (MQ=255)
gCTCTTGCCACGGTTCACCATCGCCAAATAGATCCa > 1:51155/1‑36 (MQ=25)
ctctTGCCACGGTTCACCATCGGCAAACAGATCCaa > 1:4094248/1‑36 (MQ=255)
ctctTGCCACGGTTCACCATCGGCAAACAGATCCaa > 1:1728344/1‑36 (MQ=255)
tctTGCCACGGTTCACCATCGGCAAACAGATCCAAc > 1:5550403/1‑36 (MQ=255)
ctTGCCACGGTTCACCATCGGCAAACAGATCCAACa > 1:6024878/1‑36 (MQ=255)
ttGCCACGGTTCACCATCGGCAAACAGATCCAACAt > 1:5448529/1‑36 (MQ=255)
ttGCCACGGTTCACCATCGGCAAACAGATCCAACAt < 1:7163880/36‑1 (MQ=255)
gCCACGGTTCACCATCGGCAAACAGATCCAACATTa < 1:5692384/36‑1 (MQ=255)
gCCACGGTTCACCATCGGCAAACAGATCCAACATTa > 1:5362466/1‑36 (MQ=255)
gCCACGGTTCACCATCGGCAAACAGATCCAACATTa > 1:1078245/1‑36 (MQ=255)
ccACGGTTCACCATCGGCAAACAGATCCAACATTAc > 1:6200315/1‑36 (MQ=255)
cACGGTTCACCATCGGCAAACAGATCCAACATTAcc > 1:3852159/1‑36 (MQ=255)
cACGGTTCACCATCGGCAAACAGATCCAACATTAcc > 1:4579317/1‑36 (MQ=255)
aCGGTTCACCATCGGCAAACAGATCCAACATTACct > 1:1334309/1‑36 (MQ=255)
aCGGTTCACCATCGGCAAACAGATCCAACATTACct < 1:90172/36‑1 (MQ=255)
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AAATTACCGCTCCAGCCGCCAGTGGCTCTTGCCACGGTTCACCATCGGCAAACAGATCCAACATTACCT > REL606/2259382‑2259450
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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