New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2822187 =NA (NA)32 (0.570) 26/64 NT 56.1% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997504 25 (0.400)coding (172/903 nt) ECB_02798 conserved hypothetical protein

AAATCTGAACATCACACTTTCAGATTTTGAACTTGAACAAATAATTTCTGGTATGCGTCTGAAGGCCCTG  >  REL606/2997470‑2997539
                                  |                                   
aaaTCTGAACATCACACTTTCAGATTttgaacttga                                    >  1:4251625/1‑36 (MQ=255)
aaaTCTGAACATCACACTTTCAGATTTTGAACTTGg                                    <  1:2969424‑M2/36‑2 (MQ=255)
 aaTCTGAACATCACACTTTCAGATTttgaacttgaa                                   >  1:3543502/1‑36 (MQ=255)
 aaTCTGAACATCACACTTTCAGATTTTGAACTTGgg                                   >  1:3340618‑M2/1‑34 (MQ=255)
  aTCTGAACATCACACTTTCAGATTttgaacttgaac                                  <  1:2973613/36‑1 (MQ=255)
  aTCTGAACATCACACTTTCAGATTTTGAACTTGggt                                  <  1:256421‑M2/36‑4 (MQ=255)
  aTCTGAACATCACACTTTAAGATTTTGAACTTGggt                                  <  1:7574490‑M2/36‑4 (MQ=255)
    cTGAACATCACACTTTCAGATTTTGAACTTGAACaa                                <  1:5630998/36‑1 (MQ=255)
      gAACATCACACTTTCAGATTTTGAACTTGAACAaat                              >  1:357980/1‑36 (MQ=255)
       aaCATCACCCTTTCAGATTTTGAACTTGAACAaata                             >  1:4932611/1‑36 (MQ=255)
        aCATCACACTTTCAGATTTTGAACTTGggtaatgac                            >  1:3221975‑M2/1‑27 (MQ=255)
        aCATCACACTTTCAGATTTTGAACTTGggtaatgac                            >  1:3960175‑M2/1‑27 (MQ=255)
        aCATCACACTTTCAGATTTTGAACTTGAACAaataa                            >  1:4069091/1‑36 (MQ=255)
         cATCACACTTTCAGATTTTGAACTTGAACAaataat                           >  1:5329810/1‑36 (MQ=255)
          aTCACACTTTCAGATTTTGAACTTGggtaatgactc                          >  1:428704‑M2/1‑25 (MQ=255)
          aTCACACTTTCAGATTTTGAACTTGggtaatgactc                          <  1:2000017‑M2/36‑12 (MQ=255)
          aTCACACTTTCAGATTTTGAACTTGggtaatgactc                          >  1:2806725‑M2/1‑25 (MQ=255)
           tCACACTTTCAGATTTTGAACTTGAACAAATAAttt                         <  1:335348/36‑1 (MQ=255)
             acatTTTCAGATTTTGAACTTGggtaatgactccaa                       <  1:5455090‑M2/36‑15 (MQ=255)
             acacTTTCAGATTTTGAACTTGAACAAATAATTTCt                       <  1:7581725/36‑1 (MQ=255)
             acacTTTCAGATTTTGAACTTGAACAAATAATTTCt                       <  1:7579947/36‑1 (MQ=255)
              cacTTTCAGATTTTGAACTTGggtaatgactccaac                      <  1:7541977‑M2/36‑16 (MQ=255)
              cacTTTCAGATTTTGAACTTGggtaatgactccaac                      >  1:5260727‑M2/1‑21 (MQ=255)
              cacTTTCAGATTTTGAACTTGggtaatgactccaac                      <  1:6689261‑M2/36‑16 (MQ=255)
              cacTTTCAGATTTTGAACTTGAACAAATAATTTCTg                      >  1:8461547/1‑36 (MQ=255)
               acTTTCAGATTTTGAACTTGggtaatgactccaact                     >  1:7915755‑M2/1‑20 (MQ=255)
               acTTTCAGATTTTGAACTTGggtaatgactccaact                     <  1:429141‑M2/36‑17 (MQ=255)
               acTTTCAGATTTTGAACTTGAACAAATAATTTCTgg                     >  1:3465825/1‑36 (MQ=255)
               acTTTCAGATTTTGAACTTGAACAAATAATTTCTgg                     >  1:4754376/1‑36 (MQ=255)
               acTTTCAGATTTTGAACTTGAACAAATAATTTCTgg                     >  1:422939/1‑36 (MQ=255)
                cTTTCAGATTTTGAACTTGAACAAATAATTTCTGGt                    >  1:3942997/1‑36 (MQ=255)
                 tttCAGATTTTGAACTTGggtaatgactccaactta                   <  1:6943406‑M2/36‑19 (MQ=255)
                 tttCAGATTTTGAACTTGAACAAATAATTTCTGGTa                   <  1:7126284/36‑1 (MQ=255)
                  ttCAGATTTTGAACTTGggtaatgactccaacttat                  <  1:7195800‑M2/36‑20 (MQ=255)
                  ttCAGATTTTGAACTTGAACAAATAATTTCTGGTAt                  >  1:304736/1‑36 (MQ=255)
                  ttCAGATTTTGAACTTGAACAAATAATTTCTGGTAt                  <  1:1853028/36‑1 (MQ=255)
                    cAGATTTTGAACTTGggtaatgactccaacttattg                <  1:1722427‑M2/36‑22 (MQ=255)
                    cAGATTTTGAACTTGggtaatgactccaacttattg                >  1:7791918‑M2/1‑15 (MQ=255)
                    cAGATTTTGAACTTGggtaatgactccaacttattg                <  1:7557228‑M2/36‑22 (MQ=255)
                    cAGATTTTGAACTTGggtaatgactccaacttattg                <  1:2483108‑M2/36‑22 (MQ=255)
                     aGATTTTGAACTTGggtaatgactccaacttattga               <  1:4073744‑M2/36‑23 (MQ=255)
                     aGATTTTGAACTTGggtaatgactccaactcattga               >  1:5580535‑M2/1‑14 (MQ=255)
                     aGATTTTGAACTTGAACAAATAATTTCTGGTATGCg               >  1:4323796/1‑36 (MQ=255)
                       aTTTTGAACTTGggtaatgactccaacttattgata             <  1:3803804‑M2/36‑25 (MQ=255)
                       aTTTTGAACTTGggtaatgactccaacttattgata             >  1:1372074‑M2/1‑12 (MQ=255)
                        ttttGAACTTGggtaatgactccaacttattgatag            >  1:3076877‑M2/1‑11 (MQ=255)
                         tttGAACTTGggtaatgactccaacttattgatagt           <  1:4080983‑M2/36‑27 (MQ=255)
                         tttGAACTTGggtaatgactccaacttattgatagt           >  1:5443078‑M2/1‑10 (MQ=255)
                          ttgaacttgaacAAATAATTTCTGGTATGCGTCTGa          >  1:4858772/1‑36 (MQ=255)
                          ttGAACTTGggtaatgactccaacttattgatagtg          >  1:6144544‑M2/1‑9 (MQ=255)
                          ttGAACTTGggtaatgactccaacttattgatagtg          <  1:5664996‑M2/36‑28 (MQ=255)
                           tgaacttgaacAAATAATTTCTGGTATGCGTCTGaa         <  1:7365618/36‑1 (MQ=255)
                           tgaacttgaacAAATAATTTCTGATATGCGTCTGaa         <  1:1122042/36‑1 (MQ=255)
                             aacttgaacAAATAATTTCTGGTATGCGTCTGAAgg       >  1:4535953/1‑36 (MQ=255)
                              acttgaacAAATAATTTCTGGTATGCGTCTGAAGGc      <  1:8271148/36‑1 (MQ=255)
                              aCTTGggtaatgactccaacttattgatagtgtttt      <  1:7729887‑M2/36‑32 (MQ=255)
                               cTTGggtaatgactccaacttattgatagtgtttta     >  1:3816368‑M2/1‑4 (MQ=255)
                                ttGggtaatgactccaacttattgatagtgttttat    <  1:7712867‑M2/36‑34 (MQ=255)
                                ttGggtaatgactccaacttattgatagtgttttat    <  1:960804‑M2/36‑34 (MQ=255)
                                ttGggtaatgactccaacttattgatagtgttttat    >  1:4335303‑M2/1‑3 (MQ=255)
                                 tgaacAAATAATTTCTGGTATGCGTCTGAAGGCCCt   <  1:93676/36‑1 (MQ=255)
                                 tgaacAAATAATTTCTGGTATGCGTCTGAAGGCCCt   >  1:879626/1‑36 (MQ=255)
                                 tGggtaatgactccaacttattgatagtgttttatt   <  1:7140227‑M2/36‑35 (MQ=255)
                                 tGggtaatgactccaacttattgatagtgttttatg   >  1:4554451‑M2/1‑2 (MQ=255)
                                 tGggtaatgactccaacttattgatagtgttttatg   <  1:4180347‑M2/36‑35 (MQ=255)
                                 tGggtaatgactccaacttattgatagtgttttatg   >  1:7698271‑M2/1‑2 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:1084969‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:1152670‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:1152912‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:7919439‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:1405704‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:7813997‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:2287307‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:2622962‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:2884247‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:3056043‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:3894618‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:5003498‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:5032085‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:7083989‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:5193927‑M2/36‑36 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:6825533‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  >  1:6809339‑M2/1‑1 (MQ=255)
                                  gggtaatgactccaacttattgatagtgttttatgt  <  1:6234943‑M2/36‑36 (MQ=255)
                                  gaacAAATAATTTCTGGTATGCGTCTGAAGGCCCTg  <  1:2759769/36‑1 (MQ=255)
                                  |                                   
AAATCTGAACATCACACTTTCAGATTTTGAACTTGAACAAATAATTTCTGGTATGCGTCTGAAGGCCCTG  >  REL606/2997470‑2997539

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG