Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,029,304 | G→T | 30.1% | intergenic (‑278/‑340) | yihA ← / → yihI | GTP‑binding protein/hypothetical protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,029,304 | 0 | G→T | 30.1% | 13.3 ‑2.1 0.0 | 38 | intergenic (‑278/‑340) | yihA/yihI | GTP‑binding protein/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (11/1): ref base (16/10): total (27/11) | ||||||||||
Fisher's exact test strand distribution p-value = 1.21e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAAATGTGCAAATACTGATGGCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCACCCATAGAGC > REL606/4029270‑4029339
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aaaaTGTGCAAATACTGATGGCGG.TTGAttttttgt > 1:7659368/1‑36 (MQ=255)
aaaaTGTGCAAATACTGATGGCGG.TTGAttgtttgt < 1:1041272/36‑1 (MQ=255)
aaaaTGTGCAAATACTGATGGCGG.TTGAttgtttgt < 1:6290414/36‑1 (MQ=255)
aaaTGTGCAAATACTGATGGCGG.TTGATtgtttgtt < 1:4361190/36‑1 (MQ=255)
aaTGTGCAAATACTGATGGCGG.TTTATTtttttttt > 1:3010249/1‑36 (MQ=21)
aTGTGCAAATACTGATGGCGG.TTGATTGTTTGTTTa < 1:6733239/36‑1 (MQ=255)
tgtgCAAATACTGATGGCGG.TTGATTGTTTGTTTaa < 1:5572480/36‑1 (MQ=255)
gtgCAAATACTGATGGCGG.TTTATTGTTTTTTTaaa > 1:7668720/1‑36 (MQ=37)
gtgCAAATACTCATGGCGT.TTGATTGTTTTTTGaac < 1:5659920/36‑2 (MQ=16)
tgCAAATACTGATGGCGG.TTTATTTTTTTTTTTAAg > 1:4304700/1‑36 (MQ=16)
tgCAAATACTGATGGCGG.TTTATTGTTTTTTTTAAg > 1:1085452/1‑36 (MQ=21)
gCAAATACTGATGGCGG.TTGATTGTTTGTTTAAAGc < 1:7352806/36‑1 (MQ=255)
gCAAATACTGATGGCGG.TTGATTGTTTGTTTAAAGc < 1:3660253/36‑1 (MQ=255)
cAAATACTGATGGCGG.TTGATTGTTTGTTTAAAGCa < 1:184349/36‑1 (MQ=255)
aaTACTGATGGCGG.TTGATTTTTTTTTTTAATCaaa > 1:2694889/1‑36 (MQ=19)
aaTACTGATGGCGG.TTGATTGTTTTTTTAAAGCaaa > 1:2548598/1‑36 (MQ=255)
aTACTGATGGCGG.TTGGTTTTTTTTTTATAGCaaaa > 1:1272745/1‑35 (MQ=16)
aTACTGATGGCGG.TTGATTGTTTTTTTTAAGCAAAg > 1:5782836/1‑36 (MQ=37)
tACTGATGGCGGTTTGTTTTTTTTTTTAAAAAAAAg > 1:3822480/1‑36 (MQ=0)
tACTGATGGCGG.TTGATTTTTTTTTTTAAGCaaaag > 1:6163921/1‑34 (MQ=21)
aCTGATGGCTG.TTGATTGTTTGTTTAAAGCAAAGGc < 1:5803415/36‑1 (MQ=255)
aCTGATGGCGG.TTTATTGTTTGTTTAAAGCAAAGGc > 1:6530605/1‑36 (MQ=255)
aCTGATGGCGG.TTGATTGTTTTTTTTAAGCAAAggg > 1:2455429/1‑35 (MQ=37)
aCTGATGGCGG.TTGATTGTTTGTTTAAAGCAAAggg > 1:910484/1‑35 (MQ=255)
aTGGCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTaa < 1:2579094/36‑1 (MQ=255)
tGGCGG.TTGATTGTTTTTTTAAAGAAAAGGCGTaaa > 1:6264189/1‑36 (MQ=37)
gCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGt < 1:7798097/36‑1 (MQ=255)
gCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGt > 1:1306976/1‑36 (MQ=255)
gCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGt > 1:2875771/1‑36 (MQ=255)
cGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTa > 1:873333/1‑36 (MQ=255)
gg.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAg > 1:1845979/1‑36 (MQ=255)
gg.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAg > 1:4303655/1‑36 (MQ=255)
g.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGc > 1:1918588/1‑36 (MQ=255)
g.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGc > 1:4880400/1‑36 (MQ=255)
g.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGc < 1:5147772/36‑1 (MQ=255)
g.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGc > 1:1060441/1‑36 (MQ=255)
g.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGc > 1:2697786/1‑36 (MQ=255)
ttGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCa > 1:7841869/1‑36 (MQ=255)
ttGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCa > 1:1867527/1‑36 (MQ=255)
tGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCAc > 1:1488081/1‑36 (MQ=255)
aTTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCAccc > 1:5367846/1‑36 (MQ=255)
aTTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCAccc < 1:832800/36‑1 (MQ=255)
aTTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCAccc > 1:2934757/1‑36 (MQ=255)
tgtttgttTAAAGCAAAGGCGTAAAGTAGCACCCAt < 1:1286377/36‑1 (MQ=255)
gtttgtttAAAGCAAAGGCGTAAAGTAGCACCCATa < 1:6743195/36‑1 (MQ=255)
gtttgtttAAAGCAAAGGCGTAAAGTAGCACCCATa < 1:6305328/36‑1 (MQ=255)
gtttgtttAAAGCAAAGGCGTAAAGTAGCACCCATa < 1:2652453/36‑1 (MQ=255)
gtttgtttAAAGCAAAGGCGTAAAGTAGCACCCATa > 1:4810127/1‑36 (MQ=255)
ttgtttAAAGCAAAGGCGTAAAGTAGCACCCATaga > 1:1237895/1‑36 (MQ=255)
ttgtttAAAGCAAAGGCGTAAAGTAGCACCCATaga < 1:3759228/36‑1 (MQ=255)
tgtttAAAGCAAAGGCGTAAAGTAGCACCCATagag > 1:7462853/1‑36 (MQ=255)
tgtttAAAGCAAAGGCGTAAAGTAGCACCCATagag > 1:1630776/1‑36 (MQ=255)
gtttAAAGCAAAGGCGTAAAGTAGCACCCATAGAGc < 1:2000064/36‑1 (MQ=255)
gtttAAAGCAAAGGCGTAAAGTAGCACCCATAGAGc < 1:5636354/36‑1 (MQ=255)
gtttAAAGCAAAGGCGTAAAGTAGCACCCATAGAGc > 1:4893897/1‑36 (MQ=255)
gtttAAAGCAAAGGCGTAAAGTAGCACCCATAGAGc > 1:1364327/1‑36 (MQ=255)
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AAAATGTGCAAATACTGATGGCGG.TTGATTGTTTGTTTAAAGCAAAGGCGTAAAGTAGCACCCATAGAGC > REL606/4029270‑4029339
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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