Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,280,890 | +G | 5.3% | coding (1011/2052 nt) | yjcQ ← | predicted multidrug efflux system component |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,280,890 | 1 | .→G | 5.3% | 3.5 ‑1.8 ‑0.0 | 38 | coding (1011/2052 nt) | yjcQ | predicted multidrug efflux system component |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (14/22): total (16/22) | ||||||||||
Fisher's exact test strand distribution p-value = 1.71e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.30e-01 |
TCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGT > REL606/4280855‑4280924
|
tCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGc < 1:1935658/36‑1 (MQ=255)
tCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGc > 1:2752696/1‑36 (MQ=255)
cTGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.g > 1:3618625/1‑36 (MQ=255)
cTGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.g > 1:2254262/1‑36 (MQ=255)
cTGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.g > 1:2697224/1‑36 (MQ=255)
tGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.gg < 1:6906391/36‑1 (MQ=255)
ggATTGGTAAAAGCATCGGCGGCCATTGATGGC.GGt < 1:7147252/36‑1 (MQ=255)
ggATTGGTAAAAGCATCGGCGGCCATTGATGGC.GGt < 1:6376748/36‑1 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGC.gggt > 1:1135459/1‑34 (MQ=255)
gATTGGTAAAAGCATCGGCGGCCATTGATGGC.GGtt < 1:7218097/36‑1 (MQ=255)
aTTGGTAAAAGCATCGGCGGCCATTGCTGGC.GTttt > 1:5341785/1‑36 (MQ=37)
aTTGGTAAAAGCATCGGCGGCCATTGATGGC.GGttt < 1:4853816/36‑1 (MQ=255)
aTTGGTAAAAGCATCGGCGGCCATTGATGGC.GGttt > 1:3128552/1‑36 (MQ=255)
aTTGGTAAAAGCATCGGCGGCCATTGATGGC.GGttt > 1:96827/1‑36 (MQ=255)
ttGGTAAAAGCATCGGCGGCCATTGATGGC.GGTTTg < 1:5162893/36‑1 (MQ=255)
ggTAAAAGCATCGGCGGCCCTTGATGGC.GGttttgg > 1:2863192/1‑33 (MQ=38)
ggTAAAAGCATCGGCGGCCATTGATGGC.GGttttgg > 1:4403509/1‑33 (MQ=255)
ggTAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGc < 1:6240368/36‑1 (MQ=255)
ggTAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGc < 1:4056296/36‑1 (MQ=255)
gTAAAAGCATCGGCGGCCCTTTATGGCGGGTTTggt > 1:3737242/1‑35 (MQ=16)
gTAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGCt < 1:3074673/36‑1 (MQ=255)
atAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGCt < 1:5742347/35‑1 (MQ=255)
tAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGCTg < 1:1097278/36‑1 (MQ=255)
aaaaGCATCGGCGGCCATTGATGGC.GGTTTGGCTGc < 1:4237604/36‑1 (MQ=255)
aaaaGCATCGGCGGCCATTGATGGC.GGGTTGGCTgg > 1:6700219/1‑35 (MQ=255)
aaaGCATCGGCGGTCATTGATGGCGGGTTTGGTTgg > 1:4302239/1‑35 (MQ=16)
aaaGCATCGGCGGCCATTGATGGC.GGGTTTGCTggg > 1:1923971/1‑34 (MQ=25)
aaGCATCGGCGGCCATTGATGGC.GGTTTGGCTGCgg < 1:7432097/36‑1 (MQ=255)
aGCATCGGCGGCCATTGATGGC.GGTTTTGGTGCggg > 1:6756413/1‑36 (MQ=37)
aGCATCGGCGGCCATTGATGGC.GGTTTGGCTGCggg < 1:3039610/36‑1 (MQ=255)
gCATCGGCGGCCATTGATGGC.GGTTTGGCTGCGGGc < 1:651665/36‑1 (MQ=255)
cATCGGCGGCCATTGATGGC.GGTTTGGCTGCGGGCg < 1:538691/36‑1 (MQ=255)
aTCGGCGGCCATTGATGTC.GGTTTGGCTGCGGGCGt < 1:2209530/36‑1 (MQ=255)
cggcggCCATTGATGGC.GGTTTTGCTGGGGGCGTTg > 1:5952108/1‑36 (MQ=25)
gcggcCATTGATGGC.GGTTTTGCTGCGGGCGtttgg > 1:2047455/1‑33 (MQ=37)
ggcCATTGATGGC.GGTTTGGCTGCGGGGGTTggcgg > 1:5002300/1‑36 (MQ=255)
aTTGATGGC.GGTTTGGCTGCGGGCGTTTGGGGCGTa > 1:40446/1‑36 (MQ=37)
aTTGATGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTa < 1:3389124/36‑1 (MQ=255)
tGATGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTAtt < 1:2919174/36‑1 (MQ=255)
gATGGC.GGTTTGTCTGCGGGCGTTGGCGGCGTATTc < 1:1643044/36‑1 (MQ=255)
gATGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTc < 1:170864/36‑1 (MQ=255)
agggC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTCg < 1:3449127/34‑1 (MQ=255)
tGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTCgg < 1:3319111/36‑1 (MQ=255)
ggC.GGTTTGGCTGCGGGCGTTGGCGGCGGATTCggg > 1:3822538/1‑36 (MQ=255)
gC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTCgggg > 1:2526040/1‑35 (MQ=255)
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TCTGGATTGGTAAAAGCATCGGCGGCCATTGATGGC.GGTTTGGCTGCGGGCGTTGGCGGCGTATTCGGGT > REL606/4280855‑4280924
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|