New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640121 =40 (0.730)7 (0.130) 6/64 NT 16.9% intergenic (+39/+16) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 2994081 = 29 (0.480)coding (735/2136 nt) speC ornithine decarboxylase, constitutive

ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCC  >  REL606/640086‑640155
                                   |                                  
tggaagcttcacgtaacccgtttggtttcattggcg                                    <  1:5938475‑M1/1‑1 (MQ=255)
 ggaagcttcacgtaacccgtttggtttcattggcgg                                   <  1:27855‑M1/2‑1 (MQ=255)
 ggaagcttcacgtaacccgtttggtttcattggcgg                                   <  1:1541012‑M1/2‑1 (MQ=255)
 cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                                   >  1:6579285/1‑36 (MQ=255)
  gaagcttcacgtaacccgttttgtttcattggcGGt                                  >  1:5450742‑M1/34‑36 (MQ=255)
  gaagcttcacgtaacccgtttggtttcattggcGGt                                  >  1:897991‑M1/34‑36 (MQ=255)
  gaagcttcacgtaacccgtttggtttcattggcGGt                                  >  1:5283523‑M1/34‑36 (MQ=255)
  gTCATCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                  <  1:1587645/36‑1 (MQ=255)
  gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                                  <  1:224313/36‑1 (MQ=255)
  gTCAGAAAGAATTCAAAACCCGCTTAATCAGCGGGt                                  <  1:5961070/36‑1 (MQ=255)
   tCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtt                                 <  1:7268280/36‑1 (MQ=255)
    cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                                <  1:7094875/36‑1 (MQ=255)
    cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                                <  1:4695534/36‑1 (MQ=255)
     aGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt                               <  1:934190/36‑1 (MQ=255)
     aGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt                               <  1:5860037/36‑1 (MQ=255)
       ttcacgtaacccgtttggtttcattggcGGtttttt                             <  1:2266316‑M1/8‑1 (MQ=255)
       ttcacgtaacccgtttggtttcattggcGGttcttt                             <  1:1786285‑M1/8‑1 (MQ=255)
       cAAGAATTCAAAACCCGCTTAATCAGCGGGtttttt                             <  1:2760423/36‑1 (MQ=255)
        tcacgtaacccgtttggtttcattggcGGttttttt                            <  1:4012726‑M1/9‑1 (MQ=255)
         cacgtaacccgtttggtttcattggcGGgttttttt                           <  1:7165586‑M1/10‑1 (MQ=255)
         aGAATTCAAAACCCGCTTAATCAGCGGGtttttttt                           <  1:3948527/36‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGttttttttt                          <  1:3237034/36‑1 (MQ=255)
          gAATTCAAAACCCGCTTAATCAGCGGGttttttttt                          >  1:5972139/1‑36 (MQ=255)
          acgtaacccgtttggtttcattggcGGttttttttt                          <  1:1837895‑M1/11‑1 (MQ=255)
           aaTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg                         <  1:4497079/36‑1 (MQ=255)
           aaTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg                         <  1:5575409/36‑1 (MQ=255)
           aaTTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTg                         <  1:3137777/36‑1 (MQ=255)
             ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGt                       >  1:5077394/1‑36 (MQ=255)
              aacccgtttggtttcattggcGGTTTTTTTTTGGTc                      <  1:2927968‑M1/15‑1 (MQ=255)
               cAAATCCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                     <  1:2624907/36‑1 (MQ=255)
               cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                     <  1:307410/36‑1 (MQ=255)
                aaaaCCCTCTTAATCAGCGGGTTTTTTTTTGGTCtt                    <  1:5865282/36‑1 (MQ=255)
                aaaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCtt                    >  1:1362731/1‑36 (MQ=255)
                 ccgtttggtttcattggcGGTTTTTTTTTGCTCttt                   <  1:942499‑M1/18‑1 (MQ=255)
                 aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                   >  1:5702411/1‑36 (MQ=255)
                 aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                   >  1:1739439/1‑36 (MQ=255)
                 aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                   <  1:3242174/36‑1 (MQ=255)
                 aaaCCCGCTTAATCAGAGGGTTTTTTTGTGGTCttt                   >  1:3955955/1‑36 (MQ=37)
                  aaCCCGCTTAATCATCGGGTTTTTTTTTGGTCTTTa                  <  1:7612496/36‑1 (MQ=255)
                   aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAg                 <  1:5087297/36‑1 (MQ=255)
                   aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAg                 <  1:125106/36‑1 (MQ=255)
                    cccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt                <  1:889092/36‑1 (MQ=255)
                     ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg               <  1:4523582/36‑1 (MQ=255)
                     ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg               >  1:2663222/1‑36 (MQ=255)
                       gCTTAATCATCGGGTTTTTTTTTGGTCTTTAGtgtg             <  1:6662058/36‑1 (MQ=255)
                       gCTTAATCAGCGGGTTTTTTTTTTGTCTTTAGtttg             >  1:1148189/1‑36 (MQ=37)
                       gCTGAAGCAGCGGGTTTTTTTTTGGTGTGTAGtgtg             >  1:7438752/1‑36 (MQ=16)
                         ttAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTTCg           >  1:188861/1‑36 (MQ=255)
                             tCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg       <  1:5498055/36‑1 (MQ=255)
                               aGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAg     >  1:3234163/1‑36 (MQ=255)
                                 ctggTTTTTTTTTGATCTTTATTGTGCGGTTGAGGc   <  1:4478920/34‑1 (MQ=25)
                                  gggTTTTTTTTTTGTCTTTAGTGTGCGGTTGAGGcc  <  1:696169/36‑1 (MQ=255)
                                  gggTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGcc  <  1:3649469/36‑1 (MQ=255)
                                  gggTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGcc  >  1:4405240/1‑36 (MQ=255)
                                   |                                  
ACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCC  >  REL606/640086‑640155

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG