Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,820,005 | 0 | G→T | 8.8% | 0.3 ‑10.1 0.0 | 71 | 112 | xni | exonuclease IX |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (9/0): ref base (17/45): total (26/45) | ||||||||||
Fisher's exact test strand distribution p-value = 4.20e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCC > REL606/2819971‑2820040
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tAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGt < 1:5018069/36‑1 (MQ=255)
aaGGGGGTTATCGTGGCTGTTCATTTTCTTATTTTc > 1:7454605/1‑36 (MQ=37)
aGGGGGTTATCGTGGCTGTTCATTTTCTTATTTTCg > 1:5809521/1‑36 (MQ=37)
aGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCg < 1:2547422/36‑1 (MQ=255)
aGGGGGTTATCGTGGCTGGTCATTTGCTTTTTTTCg > 1:2373467/1‑36 (MQ=25)
gggggTTATCGTGGCTGTTTATTTTCTTATTTTCGa > 1:2227026/1‑36 (MQ=25)
gggggTTATCGTGGCTGTTCATTTTCTTATTTTCGa > 1:5109467/1‑36 (MQ=37)
gggggTTATCGTGGCTGTTCATTTGCTTATTGTCGa < 1:3200776/36‑1 (MQ=255)
gggggTTATCGTGGCTGTTCATTTGCTTATTGTCGa < 1:7042485/36‑1 (MQ=255)
gggggTTATCGTGGCTGTTCATTTGCTTATTGTCGa < 1:3890510/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:693113/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:6203791/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:3050047/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:2492966/36‑1 (MQ=255)
gggTTATCGTGGCTGTTCATTTTCTTTTTTTCTATg > 1:3819801/1‑36 (MQ=16)
ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGc < 1:2340031/36‑1 (MQ=255)
ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGc < 1:986799/36‑1 (MQ=255)
ttATCGTGGCTGTTCCTTTTCTTATTGTCTATGCAc > 1:2676757/1‑36 (MQ=25)
ttATCGTGGCTGTTCATTTGCTTATTTTCGATGCAc > 1:6954818/1‑36 (MQ=255)
ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc < 1:4876149/36‑1 (MQ=255)
ttATCGTGGCTGTACATTTGCTTATTGTCGATGCAc < 1:5752922/36‑1 (MQ=255)
tATCGTGGCTGTTGATTTGCTTATTGTCGATGCACt < 1:1182130/36‑1 (MQ=255)
tATCGTGGCTGTTCATTTGCTTATTGTCGATGCACt < 1:486129/36‑1 (MQ=255)
cGTGGCTGTTCATTTGCTTATTGTCGATGCACTGaa < 1:7186077/36‑1 (MQ=255)
cGTGGCTGTTCATTTGCTTATTGTCGATGCACTGaa < 1:5290463/36‑1 (MQ=255)
gTGGCTGTTCATTTGCTTATTGTCGATGCACTGAAt < 1:2419563/36‑1 (MQ=255)
ttgCTGTTCATTTGCTTATTGTCGATGCACTGAATc < 1:5360055/34‑1 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc > 1:6119075/1‑36 (MQ=255)
tGGCTGTT.ATTTGCTTATTTTCGATGCACTGAAttt > 1:3544009/1‑34 (MQ=25)
gCTGTTCATTTGCTTATTTTCGATGCACTGAATCtt > 1:1783204/1‑36 (MQ=255)
gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt > 1:5112134/1‑36 (MQ=255)
cTGTTCATTTGCTTATTGTCGATGCACTGAATCTTa < 1:5930513/36‑1 (MQ=255)
tGTTCATTTGCTTATTGTCGATGCACTGAATCTTAt > 1:7485378/1‑36 (MQ=255)
tGTTCATTTGCTTATTGTCGATGCACTGAATCTTAt > 1:7496774/1‑36 (MQ=255)
tGTTCATTTGCTTATTGTCGATGCACTGAATCTTAt > 1:2519378/1‑36 (MQ=255)
tGTTCATTTGCTTATTGTCGATGCACTGAATCTTAt < 1:5494208/36‑1 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt < 1:3070555/36‑1 (MQ=255)
ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc > 1:6177967/1‑36 (MQ=255)
tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg > 1:7111843/1‑36 (MQ=255)
tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg > 1:5144738/1‑36 (MQ=255)
cATTTGCTTATTGTCGATGCACTGAATCTTATtcgt > 1:6104340/1‑36 (MQ=255)
cATTTGCTTATTGTCGATGCACTGAATCTTATtcgt > 1:4997538/1‑36 (MQ=255)
cATTTGCTTATTGTCGATGCACTGAATCTTATtcgt > 1:6965929/1‑36 (MQ=255)
cATTTGCTTATTGTCGATGCACTGAATCTTATtcgt < 1:3117863/36‑1 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc < 1:4962846/36‑1 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc < 1:170507/36‑1 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc < 1:7086423/36‑1 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc > 1:7455184/1‑36 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg < 1:1590627/36‑1 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc < 1:3559815/36‑1 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc < 1:4302050/36‑1 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc < 1:1853419/36‑1 (MQ=255)
gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt < 1:622845/36‑1 (MQ=255)
gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt < 1:4423535/36‑1 (MQ=255)
cTTATTGTCGATGCACTGAATCTTATTCGTCGCAtt < 1:7495999/36‑1 (MQ=255)
cTTATTGTCGATGCACTGAATCTTATTCGTCGCAtt > 1:6746951/1‑36 (MQ=255)
cTTATTGTCGATGCACTGAATCTTATTCGTCGCAtt < 1:6987242/36‑1 (MQ=255)
ttATTGTCGATGCACTGAATCTTATTCGTCGCATTc < 1:6547328/36‑1 (MQ=255)
ttATTGTCGATGCACTGAATCTTATTCGTCGCATTc < 1:1634214/36‑1 (MQ=255)
ttATTGTCGATGCACTGAATCTTATTCGTCGCATTc < 1:790700/36‑1 (MQ=255)
ttATTGTCGATGCACTGAATCTTATTCGTCGCATTc < 1:3982757/36‑1 (MQ=255)
ttATTGTCGATGCACTGAATCTTATTCGTCGCATTc < 1:3435253/36‑1 (MQ=255)
tATTGTCGATGCACTGAATCTTATTCGTCGCATTCa < 1:2533932/36‑1 (MQ=255)
tATTGTCGATGCACTGAATCTTATTCGTCGCATTCa < 1:1153520/36‑1 (MQ=255)
tATTGTCGATGCACTGAATCTTATTCGTCGCATTCa > 1:3389327/1‑36 (MQ=255)
aTTGTCGATGTTCTGAATCTTATTCGTCGCATTCAt < 1:4050406/36‑1 (MQ=37)
aTTGTCGATGCACTGAATCTTATTCGTCGCATTCAt > 1:1051239/1‑36 (MQ=255)
ttGTCGATGCACTGAATCTTATTCGTCGCATTCATg > 1:3369093/1‑36 (MQ=255)
ttGTCGATGCACTGAATCTTATTCGTCGCATTCATg < 1:1234438/36‑1 (MQ=255)
tGTCGATGCACTGAATCTTATTCGTCGCATTCATGc < 1:6393353/36‑1 (MQ=255)
tGTCGATGCACTGAATCTTATTCGTCGCATTCATGc < 1:999028/36‑1 (MQ=255)
gTCGATGCACTGAATCTTATTCGTCGCATTCATGcc > 1:7167725/1‑36 (MQ=255)
gTCGATGCACTGAATCTTATTCGTCGCATTCATGcc < 1:859790/36‑1 (MQ=255)
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TAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCC > REL606/2819971‑2820040
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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