Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546959–547702 555923–555878 8177–8965 8 [7] [0] 66 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)41 (1.030) 27/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

CCTGATTTATTAATGTATGTTGCACCTGATGCGCGTTTG...................................  <  REL606/555962‑555924
...................................TTTGGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  REL606/2035093‑2035059
                                                                          
    ATTTATTAATGTATGTTGCACCTGATTCGCGTTTGG                                    >  1:1925371/1‑36 (MQ=0)
    ATTTATTAATGTATGTTGCACCTGATGCGCGTTTGG                                    <  1:2102470/36‑1 (MQ=1)
     TTTATTAATGTATGTTGCACCTGATGCGCGTTTGGG                                   >  1:94290/1‑36 (MQ=1)
      TTATTAATGTATGTTTCACCTGATGCGCGTTTGGGT                                  <  1:1385163/36‑1 (MQ=0)
      TTATTAATGTATGTTGCACCTGATGCGCGTTTGGGT                                  <  1:726795/36‑1 (MQ=1)
      TTATTAATGTATGTTGCACCTGATGCGCGTTTGGGT                                  <  1:3155749/36‑1 (MQ=1)
       TATTAATGTATGTTGCACCTGATGCGCGTTTGGGTG                                 >  1:813466/1‑36 (MQ=1)
       TATTAATGTATGTTGCACCTGATGCGCGTTTGGGTG                                 <  1:473315/36‑1 (MQ=1)
       TATTAATGTATGTTGCACCTGATGCGCGTTTGGGTG                                 >  1:4008739/1‑36 (MQ=1)
        ATTAATGTATGTTGCACCTGATGCGCGTTTGGGTGA                                <  1:2538789/36‑1 (MQ=1)
        ATTAATGTATGTTGCACCTGATGCGCGTTTGGGTGA                                <  1:3058747/36‑1 (MQ=1)
         TTAATGTATGTTGCACCTGATGCGCGTTTGGGTGAT                               >  1:926487/1‑36 (MQ=1)
         TTAATGTATGTTGCACCTGATGCGCGTTTGGGTGAT                               >  1:4013049/1‑36 (MQ=1)
          TAATGTATGTTGCACCTGATGCGCGTTTGGGTGATG                              >  1:191197/1‑36 (MQ=1)
           AATGTATGTTGCCCCTGATGCGCGTTTGGGTGATGC                             >  1:2921671/1‑36 (MQ=0)
           AATGTATGTTGCACCTGATGCGCGTTTGGGTGATGC                             >  1:1009596/1‑36 (MQ=1)
             TGTATGTTGCACCTGATGCGCGTTTGGGTGATGCTG                           >  1:3581696/1‑36 (MQ=1)
             TGTATGTTGCACCTGATGCGCGTTTGGGTGATGCTG                           >  1:817951/1‑36 (MQ=1)
               TATGTTGCACCTGATGCGCGTTTGGGTGATGCTGCC                         <  1:1326017/36‑1 (MQ=1)
                ATGTTGCACCTGATGCGCGTTTGGGTGATGCTGCCA                        <  1:5240058/36‑1 (MQ=1)
                ATGTTGCACCTGATGCGCGTTTGGGTGATGCTGCCA                        >  1:4839836/1‑36 (MQ=1)
                 TGTTGCACCTGATGCGCGTTTGGGTGATGCTGCCAA                       >  1:919504/1‑36 (MQ=1)
                 TGTTGCACCTGATGCGCGTTTGGGTGATGCTGCCAA                       <  1:4667312/36‑1 (MQ=1)
                   TTGCACCTGATGCGCGTTTGGGTGATGCTGCCAACT                     <  1:243389/36‑1 (MQ=1)
                     GCACCTGATGCGCGTTTGGGTGATGCTGCCAACTTA                   >  1:3912990/1‑36 (MQ=1)
                     GCACCTGATGCGCGTTTGGGAGATGCTGCCAACTTA                   >  1:3434064/1‑36 (MQ=0)
                       ACCTGATGCGCGTTTGGGTGATGCTGCCAACTTCCT                 >  1:1028598/1‑36 (MQ=0)
                       ACCTGATGCGCGTTTGGGTGATGCTGCCAACTTACT                 <  1:852418/36‑1 (MQ=1)
                       ACCTGATGCGCGTTTGGGTGATGCTGCAAACTTACT                 >  1:5567835/1‑36 (MQ=0)
                        CCTGATGCGCGTTTGGGTGATGCTGCCAACTTACTG                >  1:4570926/1‑36 (MQ=1)
                        CCTGATGCGCGTTTGGGTGATGCTGCCAACTTACTG                >  1:1115020/1‑36 (MQ=1)
                           GATGCGCGTTTGGGTGATGCTGCCAACTTACTGATT             <  1:3994867/36‑1 (MQ=1)
                           GATGCGCGTTTGGGTGATGCTGCCAACTTACTGATT             <  1:785966/36‑1 (MQ=1)
                            ATGCGCGTTTGGGTGATGCTGACAACTTACTGATTT            >  1:5661330/1‑36 (MQ=0)
                               CGCGTTTGGGTGATGCTGCCATCTTACTGATTTAGT         <  1:2454518/36‑1 (MQ=0)
                               CGCGTTTGGGTGATGCTGCCAACTTACTGATTTAGT         <  1:3627279/36‑1 (MQ=1)
                                GCGTTTGGGTGATGCTGCCAACTTACTGATTTAGTG        >  1:5101822/1‑36 (MQ=1)
                                GCGTTTGGGTGATGCTGCCAACTTACTGATTTAGTG        >  1:5208358/1‑36 (MQ=1)
                                GCGTTTGGGTGATGCTGCCAACTTACTGATTTAGTG        <  1:3139012/36‑1 (MQ=1)
                                 CGTTTGGGTGATGCTGCCAACTTACTGATTTAGTGT       <  1:5042855/36‑1 (MQ=1)
                                 CGTTTGGGTGATGCTGCCAACTTACTGATTTAGTGT       <  1:3985948/36‑1 (MQ=1)
                                                                          
CCTGATTTATTAATGTATGTTGCACCTGATGCGCGTTTG...................................  <  REL606/555962‑555924
...................................TTTGGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT  <  REL606/2035093‑2035059

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG