Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546959–547702 | 555923–555878 | 8177–8965 | 8 [7] | [0] 66 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 0 (0.000) | 41 (1.030) | 27/62 | NT | 100% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC > REL606/555889‑555959
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atcatacactaaatcagtaagttggcagcatcgccc > 1:489247‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatccccc > 1:834211‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:3298774‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:5242265‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:3632515‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:2691061‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:3808837‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:2235414‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:2173823‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:5795462‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:5898913‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:1752338‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc > 1:1307707‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc < 1:505201‑M1/1‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:3396851‑M1/2‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:3906930‑M1/2‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:2470487‑M1/2‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:249326‑M1/2‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa < 1:3058739‑M1/2‑1 (MQ=255)
tcatacactaaatcagtaagttggcagcatcaccCa > 1:262516‑M1/35‑36 (MQ=255)
tcatacactaaatcagcaagttggcagcatcaccCa < 1:5240436‑M1/2‑1 (MQ=255)
tcataaactaaatcagtaagttggcagcatcaccCa < 1:5200930‑M1/2‑1 (MQ=255)
atacactaaatcagtaagttggcagcatcaccCaaa < 1:5365345‑M1/4‑1 (MQ=255)
acactaaatcagtaagttggcagcatcaccCAAAcg < 1:5042855‑M1/6‑1 (MQ=255)
acactaaatcagtaagttggcagcatcaccCAAAcg < 1:3985948‑M1/6‑1 (MQ=255)
cactaaatcagtaagttggcagcatcaccCAAAcgc > 1:5101822‑M1/30‑36 (MQ=255)
cactaaatcagtaagttggcagcatcaccCAAAcgc > 1:5208358‑M1/30‑36 (MQ=255)
cactaaatcagtaagttggcagcatcaccCAAAcgc < 1:3139012‑M1/7‑1 (MQ=255)
actaaatcagtaagttggcagcatcaccCAAAcgcg < 1:3627279‑M1/8‑1 (MQ=255)
actaaatcagtaagatggcagcatcaccCAAAcgcg < 1:2454518‑M1/8‑1 (MQ=255)
aaatcagtaagttgtcagcatcaccCAAACGCGCAt > 1:5661330‑M1/26‑36 (MQ=255)
aatcagtaagttggcagcatcaccCAAACGCGCATc < 1:785966‑M1/12‑1 (MQ=255)
aatcagtaagttggcagcatcaccCAAACGCGCATc < 1:3994867‑M1/12‑1 (MQ=255)
cagtaagttggcagcatcaccCAAACGCGCATCAgg > 1:4570926‑M1/22‑36 (MQ=255)
cagtaagttggcagcatcaccCAAACGCGCATCAgg > 1:1115020‑M1/22‑36 (MQ=255)
agtaagtttgcagcatcaccCAAACGCGCATCAGGt > 1:5567835‑M1/21‑36 (MQ=255)
agtaagttggcagcatcaccCAAACGCGCATCAGGt < 1:852418‑M1/16‑1 (MQ=255)
aggaagttggcagcatcaccCAAACGCGCATCAGGt > 1:1028598‑M1/21‑36 (MQ=255)
taagttggcagcatctccCAAACGCGCATCAGGTGc > 1:3434064‑M1/19‑36 (MQ=255)
taagttggcagcatcaccCAAACGCGCATCAGGTGc > 1:3912990‑M1/19‑36 (MQ=255)
agttggcagcatcaccCAAACGCGCATCAGGTGCaa < 1:243389‑M1/20‑1 (MQ=255)
ttggcagcatcaccCAAACGCGCATCAGGTGCAaca < 1:4667312‑M1/22‑1 (MQ=255)
ttggcagcatcaccCAAACGCGCATCAGGTGCAaca > 1:919504‑M1/15‑36 (MQ=255)
tggcagcatcaccCAAACGCGCATCAGGTGCAacat < 1:5240058‑M1/23‑1 (MQ=255)
tggcagcatcaccCAAACGCGCATCAGGTGCAacat > 1:4839836‑M1/14‑36 (MQ=255)
ggcagcatcaccCAAACGCGCATCAGGTGCAacata < 1:1326017‑M1/24‑1 (MQ=255)
cagcatcaccCAAACGCGCATCAGGTGCAacataca > 1:3581696‑M1/11‑36 (MQ=255)
cagcatcaccCAAACGCGCATCAGGTGCAacataca > 1:817951‑M1/11‑36 (MQ=255)
gcatcaccCAAACGCGCATCAGGTGCAACATACAtt > 1:1009596‑M1/9‑36 (MQ=255)
gcatcaccCAAACGCGCATCAGGGGCAACATACAtt > 1:2921671‑M1/9‑36 (MQ=255)
catcaccCAAACGCGCATCAGGTGCAACATACATta > 1:191197‑M1/8‑36 (MQ=255)
atcaccCAAACGCGCATCAGGTGCAACATACATtaa > 1:4013049‑M1/7‑36 (MQ=255)
atcaccCAAACGCGCATCAGGTGCAACATACATtaa > 1:926487‑M1/7‑36 (MQ=255)
tcaccCAAACGCGCATCAGGTGCAACATACATtaat < 1:3058747‑M1/31‑1 (MQ=255)
tcaccCAAACGCGCATCAGGTGCAACATACATtaat < 1:2538789‑M1/31‑1 (MQ=255)
caccCAAACGCGCATCAGGTGCAACATACATtaata < 1:473315‑M1/32‑1 (MQ=255)
caccCAAACGCGCATCAGGTGCAACATACATtaata > 1:4008739‑M1/5‑36 (MQ=255)
caccCAAACGCGCATCAGGTGCAACATACATtaata > 1:813466‑M1/5‑36 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa < 1:726795‑M1/33‑1 (MQ=255)
accCAAACGCGCATCAGGTGCAACATACATtaataa < 1:3155749‑M1/33‑1 (MQ=255)
accCAAACGCGCATCAGGTGAAACATACATtaataa < 1:1385163‑M1/33‑1 (MQ=255)
ccCAAACGCGCATCAGGTGCAACATACATTAATaaa > 1:94290‑M1/3‑36 (MQ=255)
cCAAACGCGCATCAGGTGCAACATACATTAATAAAt < 1:2102470‑M1/35‑1 (MQ=255)
cCAAACGCGAATCAGGTGCAACATACATTAATAAAt > 1:1925371‑M1/2‑36 (MQ=255)
CAAACGCGCATCAGGTGCAACATACATTAATAAATc > 1:1619778‑M1/1‑36 (MQ=255)
CAAACGCGCATCAGGTGCAACATACATTAATAAATc > 1:1448183‑M1/1‑36 (MQ=255)
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GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC > REL606/555889‑555959
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 23 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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