breseq  version 0.24  revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,768,2030G→T13.4% 13.7 ‑13.7 ‑0.0104intergenic (‑5/+45)ygbE/cysCconserved inner membrane protein/adenylylsulfate kinase
*REL6062,735,7190C→G13.7% 9.8 ‑23.4 0.01261336ascFfused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component
*REL6062,735,5000A→G13.9% 8.5 ‑15.6 0.0971117ascFfused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component
*REL6063,893,5501.→G 4.8% 7.4 0.0 ‑0.162intergenic (+5/‑51)kup/insJ‑5potassium transporter/IS150 hypothetical protein
*REL6062,732,6700C→A11.7% 6.1 ‑17.2 0.0141296hydNformate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit
*REL6062,729,2240G→T13.0% 5.6 ‑13.9 0.095453ygbDnitric oxide reductase
*REL6062,735,9850A→G10.7% 4.8 ‑14.8 0.0107136ascBcryptic 6‑phospho‑beta‑glucosidase
*REL6062,760,9130A→G10.5% 4.7 ‑15.7 0.097952ygbNpredicted transporter
*REL606179,9451.→G 4.8% 3.9 ‑1.4 0.063coding (522/624 nt)yadSconserved inner membrane protein
*REL6062,735,9940C→G 6.6% 3.2 ‑9.6 0.0105145ascBcryptic 6‑phospho‑beta‑glucosidase
*REL6062,730,1880G→A10.2% 3.1 ‑10.6 0.0972098hypFcarbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases
*REL6062,728,6480C→A 6.1% 2.7 ‑6.6 0.01051313norVanaerobic nitric oxide reductase flavorubredoxin
*REL6062,735,9841.→A 1.9% 2.6 ‑2.5 ‑0.1103coding (135/1425 nt)ascBcryptic 6‑phospho‑beta‑glucosidase
*REL6062,745,0800A→T 7.7% 1.9 ‑10.4 0.091216hycAregulator of the transcriptional regulator FhlA
*REL60615,3890A→C 5.3% 1.3 ‑6.6 0.0131intergenic (+93/‑54)dnaJ/insL‑1chaperone Hsp40, co‑chaperone with DnaK/IS186 hypothetical protein
*REL6062,735,1171.→G 2.5% 1.2 ‑2.1 ‑0.081coding (734/1458 nt)ascFfused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component
*REL6062,774,9970G→T100.0% 0.4 7316insK‑3IS150 putative transposase
*REL6062,735,4291.→G 2.8% 0.3 ‑2.1 ‑0.071coding (1046/1458 nt)ascFfused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component
*REL6062,763,3580A→G 6.7% 0.3 ‑11.2 0.0139257nlpDpredicted outer membrane lipoprotein
*REL6063,554,9810A→G100.0% 0.3 1intergenic (+161/‑85)yrhC/yhhIb4552; predicted protein fragment/predicted transposase
*REL6063,774,1240G→T 8.0% 0.3 ‑8.5 0.090848yicJpredicted transporter
*REL6061,499,1000A→G100.0% 0.2 31017ECB_01413conserved hypothetical protein
*REL6062,758,1371.→C 2.6% 0.2 ‑1.7 0.076coding (943/1263 nt)ygbKhypothetical protein
*REL6061,607,7740T→G100.0% 0.1 2159ECB_01510putative tail component of prophage
*REL6061,607,7750A→T100.0% 0.1 2158ECB_01510putative tail component of prophage
*REL6061,607,7860C→A100.0% 0.1 2147ECB_01510putative tail component of prophage
*REL6062,729,2280G→T 9.5% 0.1 ‑11.1 0.098457ygbDnitric oxide reductase
*REL6062,774,9980C→T100.0% 0.1 7315insK‑3IS150 putative transposase
*REL6062,775,4740G→T100.0% 0.1 5357insJ‑3IS150 hypothetical protein
*REL6064,156,1890T→C100.0% 0.1 1635tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL6064,156,2000G→A100.0% 0.1 1646tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL6064,156,2010A→C100.0% 0.1 1647tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL6064,156,2060G→A100.0% 0.1 1652tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL6061,499,0970A→C100.0% ‑0.0 31014ECB_01413conserved hypothetical protein
*REL6061,607,7790A→C100.0% ‑0.0 2154ECB_01510putative tail component of prophage
*REL6061,607,7800G→A100.0% ‑0.0 2153ECB_01510putative tail component of prophage
*REL6061,607,7850G→A100.0% 0.0 2148ECB_01510putative tail component of prophage
*REL6064,156,1920T→C100.0% 0.0 1638tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL6064,156,2080A→C100.0% 0.0 1654tufprotein chain elongation factor EF‑Tu (duplicate of tufA)
*REL606429,8800T→G100.0% ‑0.1 1908insL‑2putative transposase insL for insertion sequence IS186
*REL606430,3280C→T100.0% ‑0.1 1460insL‑2putative transposase insL for insertion sequence IS186
*REL606430,4730A→C100.0% ‑0.1 1315insL‑2putative transposase insL for insertion sequence IS186