New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 161952938 (0.720)7 (0.130) 4/60 NT 17.1% intergenic (‑138/+79) rem/hokD predicted protein/small toxic polypeptide
?REL606 = 3069838 30 (0.490)coding (621/1500 nt) pitB phosphate transporter

TTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGGATGCCT  >  REL606/1619495‑1619564
                                  |                                   
ttCAAACGCGTTGAAAATAAAAACAAAAACccgccg                                    >  1:8471211/1‑36 (MQ=255)
ttCAAACGCGTTGAAAATAAAAACAAAAACccgccg                                    >  1:4892031/1‑36 (MQ=255)
ttCAAACGCGTTGAAAATAAAAACAAAAACccgccg                                    >  1:6938667/1‑36 (MQ=255)
  cAAACGCGTTGAAAATAAAAACAAAAACCCGCCGaa                                  >  1:7139976/1‑36 (MQ=255)
   aaaCGCGTTGAAAATAAAAACAAAAACCCGCCGAAg                                 >  1:8253459/1‑36 (MQ=255)
   aaaCGCGTTGAAAATAAAAACAAAAACCCGCCGAAg                                 >  1:1494717/1‑36 (MQ=255)
    aaCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGc                                >  1:6232255/1‑36 (MQ=255)
     aCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCg                               <  1:7547565/36‑1 (MQ=255)
      cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCgg                              >  1:4561638/1‑36 (MQ=255)
       gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                             <  1:7548544/36‑1 (MQ=255)
       gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                             >  1:5030127/1‑36 (MQ=255)
       gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                             >  1:1096881/1‑36 (MQ=255)
       gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                             <  1:6859339/36‑1 (MQ=255)
        cgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                            >  1:2622034/1‑36 (MQ=255)
        cgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                            >  1:7302027/1‑36 (MQ=255)
        cgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                            <  1:7065049/36‑1 (MQ=255)
            gAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAag                        >  1:7853880/1‑36 (MQ=255)
            gAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAag                        <  1:1137798/36‑1 (MQ=255)
             aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt                       >  1:7583944/1‑36 (MQ=255)
             aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt                       <  1:3628946/36‑1 (MQ=255)
              aaaTAAAAACAAAAACCCGCCAAAGCGGGTTAagtg                      >  1:513111/1‑36 (MQ=255)
               aaTAAAAACAAAAACCCGCCGAAGCGGGTTAagtgc                     >  1:1073318/1‑36 (MQ=255)
                 tAAAAACAAAAACCCGCCGAAGCGGGTTAagtgcga                   <  1:6854597/36‑1 (MQ=255)
                 tAAAAACAAAAACCCGCCGAAGCGGGTTAagcgcga                   >  1:1366456/1‑36 (MQ=255)
                  aaaaaaaaaaacCCGCCattctggacgcgtattgcg                  <  1:1119054‑M1/36‑20 (MQ=255)
                   aaaacagaaacCCGCCattctggacgcgtattgcgc                 <  1:7699295‑M1/36‑21 (MQ=255)
                      acaaaaacCCGCCGAAGCGGGTTAagtgcgagtgcg              >  1:7485663/1‑36 (MQ=255)
                       caaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt             >  1:3774196/1‑36 (MQ=255)
                       caaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt             >  1:3523057/1‑36 (MQ=255)
                       caaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt             >  1:7475421/1‑36 (MQ=255)
                       caaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGt             >  1:2495327/1‑36 (MQ=255)
                       aaaaaaccCGCCattctggacgcgtatcgcgctgat             <  1:3039577‑M1/35‑25 (MQ=255)
                        aaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGtt            >  1:7251987/1‑36 (MQ=255)
                         aaaacCCGCCattctggacgcgtattgcgctgattg           <  1:5574862‑M1/36‑27 (MQ=255)
                         aaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg           <  1:1035861/36‑1 (MQ=255)
                         aaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg           >  1:3049260/1‑36 (MQ=255)
                         aaaacCCGCCGAAGCGGGCTAAGTGCGAGTGCGTTg           >  1:6634727/1‑36 (MQ=255)
                          aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa          >  1:6892723/1‑36 (MQ=255)
                          aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa          >  1:3219218/1‑36 (MQ=255)
                          aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa          >  1:2908006/1‑36 (MQ=255)
                           aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg         >  1:8267822/1‑36 (MQ=255)
                           aacCCGCCGAAGCGGGGTAAGTGCGAGTGCGTTGAg         >  1:5784544/1‑36 (MQ=255)
                            ccccgCCattctggacgcgtattgcgctgattgttt        <  1:1830343‑M1/35‑30 (MQ=255)
                            acCCGCCattctggacgcgtattgcgctgattgttt        <  1:1158211‑M1/36‑30 (MQ=255)
                            acCCGCCattctggacgcgtattgcgctgattgttt        <  1:3890729‑M1/36‑30 (MQ=255)
                             cccGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGGa       >  1:4204536/1‑36 (MQ=255)
                              ccgccgAAGCGGGTTAAGTGCGAGTGCGTTGCGGAt      >  1:5851676/1‑36 (MQ=255)
                              ccgccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAt      >  1:1733549/1‑36 (MQ=255)
                              ccGCCattctggacgcgtattgcgctgattgtttcc      <  1:8091771‑M1/36‑32 (MQ=255)
                                tccattctggacgcgtattgcgctgattgtttccgc    <  1:3664558‑M1/35‑34 (MQ=255)
                                gccgAAGCGGGCTATGTGCGTGTGCGTTGAGGAtgc    >  1:2123239/1‑36 (MQ=25)
                                gCCattctggacgcgtattgcgctgattgtttccgc    <  1:7697021‑M1/36‑34 (MQ=255)
                                gCCattctggacgcgtattgcgctgattgtttccgc    <  1:7350568‑M1/36‑34 (MQ=255)
                                gCCattctggacgcgtattgcgctgattgtttccgc    <  1:4226982‑M1/36‑34 (MQ=255)
                                gCCattctggacgcgtattgcgctgattgtttccgc    <  1:6659336‑M1/36‑34 (MQ=255)
                                 ccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAtgcc   <  1:2823720/36‑1 (MQ=255)
                                 ccgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAtgcc   <  1:8089069/36‑1 (MQ=255)
                                 ccattctggactcgtattgcgctgattgtttccgct   <  1:6647223‑M1/36‑35 (MQ=255)
                                 ccattctggacgcgtattgcgctgattgtttccgct   >  1:2853257‑M1/1‑2 (MQ=255)
                                 ccattctggacgcgtattgcgctgattgtttccgct   >  1:7807635‑M1/1‑2 (MQ=255)
                                 ccattctggacgcgtattgcgctgattgtttccgct   <  1:1660667‑M1/36‑35 (MQ=255)
                                 ccattctggacgcgtattgcgctgattgtttccgct   <  1:586983‑M1/36‑35 (MQ=255)
                                  cgAAGCGGGTTAAGTGCGAGTGCGTTGAGGAtgcct  <  1:3978697/36‑1 (MQ=255)
                                  cattctggacgcgtattgcgctgattgtttccgctg  <  1:6789154‑M1/36‑36 (MQ=255)
                                  cattctggacgcgtattgcgctgattgtttccgctg  <  1:6704288‑M1/36‑36 (MQ=255)
                                  |                                   
TTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGGATGCCT  >  REL606/1619495‑1619564

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG