Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,508,110 | C→A | 35.4% | intergenic (‑108/‑65) | yddH ← / → nhoA | hypothetical protein/N‑hydroxyarylamine O‑acetyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,508,110 | 0 | C→A | 35.4% | 6.0 ‑4.0 0.0 | 21 | intergenic (‑108/‑65) | yddH/nhoA | hypothetical protein/N‑hydroxyarylamine O‑acetyltransferase |
Reads supporting (aligned to +/- strand): new base (0/8): ref base (7/6): total (7/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.80e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCGATTTGCAAACGTGATGCATGTCCGCGATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGTT > REL606/1508075‑1508141
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gCGATTTGCAAACGTGATGCATGTCCGCGATCGcac > 1:2064919/1‑36 (MQ=255)
ttGCAAACGTGATGCATGTCCGCGATCGCACAAAAt > 1:4732999/1‑36 (MQ=255)
gCAAACGTGATGCATGTCCGCGATCGCACAAAATAg < 1:650490/36‑1 (MQ=255)
cAAACGTGATGCATGTCCGCGATCGCACAAAATAGc > 1:4859446/1‑36 (MQ=255)
cAAACGTGATGCATGTCCGCGATCGCACAAAATAGc < 1:4413907/36‑1 (MQ=255)
aaaaCGTGATGCATGTCCGCGATCGCACAAAATAGc < 1:3478000/35‑1 (MQ=255)
aTGCATGTCCGCGATCGCACAAAATAGCCGGTgcgg > 1:3884623/1‑36 (MQ=255)
cgtGTCCGCGATCGCAAAGAATAGCCGGTGCGGCGt < 1:5337323/34‑1 (MQ=21)
ttGTCCGCAATCGATCAAAATAGCCGGTTCGGCGTc < 1:4656850/35‑1 (MQ=16)
gTCCGCGATCGCAAAAAATAGCCGGTGCGGCGTCTa < 1:523002/36‑1 (MQ=255)
tCCGCGATCGCAAAAAATAGCCGGTGCGGCGTCTAt < 1:1753670/36‑1 (MQ=255)
cgagATCGAACAAACTAGCCGGTTCGGCGTCTATTc < 1:5598067/33‑1 (MQ=19)
gagATCGCAAAAAATAGCCGGTGCGGCGTCTATTcc < 1:1257911/34‑1 (MQ=37)
cgATCGCACAAAATAGCCGGTGCGGCGTCTATTCCa > 1:2813479/1‑36 (MQ=255)
cgATCGCAAAAAATAGCCGGTGCGGCGTCTATTCCa < 1:5630427/36‑1 (MQ=255)
gATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAg < 1:586186/36‑1 (MQ=255)
gATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAg > 1:5344847/1‑36 (MQ=255)
aTCGCACAAAATAGCCGGTGCGGCGTCTATTCCAgg > 1:2977258/1‑36 (MQ=255)
aTCGCAAAAAATAGCCGGTGCGGCGTCTATTCCAgg < 1:2549830/36‑1 (MQ=255)
cGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGtt > 1:1058414/1‑36 (MQ=255)
cGCAAAAAATAGCCGGTGCGGCGTCTATTCCAGGtt < 1:1939770/36‑1 (MQ=255)
cGCAAAAAATAGCCGGTGCGGCGTCTATTCCAGGtt < 1:686353/36‑1 (MQ=255)
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GCGATTTGCAAACGTGATGCATGTCCGCGATCGCACAAAATAGCCGGTGCGGCGTCTATTCCAGGTT > REL606/1508075‑1508141
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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