New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3367495 =31 (0.590)4 (0.080) 4/60 NT 10.8% intergenic (‑81/+26) yhdN/rplQ hypothetical protein/50S ribosomal protein L17
?REL606 3725714 = 35 (0.570)coding (68/432 nt) yibN predicted rhodanese‑related sulfurtransferase

AGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGA  >  REL606/3725679‑3725749
                                   |                                   
aGGTCAGGCTCTTAAACGTAGTCACAAGAACCGcca                                     >  1:5439367/1‑36 (MQ=255)
  tacAGGCTCTTAATAGCAGAAAAAAGACCCGccacc                                   <  1:944052/34‑1 (MQ=2)
  gTCAGGCTCTTAAACGTAGTCACAAGAACCGccacc                                   >  1:453398/1‑36 (MQ=255)
    cAGGCTCTTAAACGTAGTAAAAAGAACCGCCACCAg                                 <  1:820209/36‑1 (MQ=37)
    cAGACTCTAAAACGTAGTCACAAGAACCGCCACCAg                                 <  1:728616/36‑1 (MQ=38)
     aGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGt                                >  1:5267628/1‑36 (MQ=255)
      ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTa                               >  1:1624187/1‑36 (MQ=255)
      ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTa                               >  1:2046800/1‑36 (MQ=255)
      ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTa                               >  1:2460470/1‑36 (MQ=255)
       gCTCTAAAACATAGTAAGAAGAACCGCCACCAGTaa                              <  1:4938541/36‑1 (MQ=19)
        ctctTAAACGTAGTCACAAGAACCGCCACCAGTAAc                             >  1:2933661/1‑36 (MQ=255)
         tctAAAACGTAGTAAAAAAAACCGCCACCAGTAAcg                            <  1:3181488/36‑1 (MQ=16)
          ctaaaaCGTAGACAAAAGAACCGCCACCAGTAAcgc                           <  1:1776176/33‑1 (MQ=21)
          ctTAAACGTAGTCACAAGAACCGCCACCAGTAAcgc                           >  1:823090/1‑36 (MQ=255)
          ctTAAACGTAGTCACAAGAAACGCCACCAGTAAcgc                           >  1:1639042/1‑36 (MQ=255)
           aaaaaCGTAGAAAAAAGAACCGCCACCAGTAAcgcg                          <  1:2580714/34‑1 (MQ=21)
             aaaCGTAGTCACAAGAACCGCCACCAGTAACGCGAt                        >  1:4579035/1‑36 (MQ=255)
              aaCGTAGTCACAAGAACCGCCACCAGTAACGCGATc                       >  1:831976/1‑36 (MQ=255)
              aaCGTAGTCACAAGAACCGCCACCAGTAACGCGATc                       >  1:1498558/1‑36 (MQ=255)
              aaCGTAGTCACAAGAACCGCCACCAGTAACGCGATc                       >  1:3501345/1‑36 (MQ=255)
              aaCGTAGTCACAAGAACCGCCACCAGTAACGCGATc                       >  1:5617890/1‑36 (MQ=255)
              aaCGTAGTCACAAGAACCGCCACCAGTAACGCGATc                       >  1:6391555/1‑36 (MQ=255)
               aCGTAGTCACAAGAACCGCCACCAGTAACGCGAttc                      >  1:3036704/1‑34 (MQ=255)
               aCGTAGTCACAAGAACCGCCACCAGTAACGCGATcc                      >  1:7993516/1‑36 (MQ=255)
                cGTAGTCACAAGAACCGCCACCAGTAACGCGATCCa                     >  1:3598712/1‑36 (MQ=255)
                 ggaGTAACAAAACCCGCCACCAGTAACGCGATCCAg                    <  1:8057080/34‑1 (MQ=18)
                  tAGTCACAAGAACCGCCACCAGTAACGCGATCCAgg                   >  1:5424811/1‑36 (MQ=255)
                  tAGCCACAAGAACCGACACCAGTAACGCGATCCAgg                   >  1:3342299/1‑36 (MQ=37)
                    gtaaaaaaacccgccACCAGTAACGCGATCCAGGCg                 <  1:8470611‑M2/21‑1 (MQ=255)
                    gTCACAAGAACCGCCACCAGTAACGCGATCCAGGCg                 >  1:2200328/1‑36 (MQ=255)
                    atCAAAAAAACCGCCACCAGTAACGCGATCCAGGCg                 <  1:1048136/35‑1 (MQ=37)
                     tCACAAGAACCGCCACCAGTAACGCGATCCAGGCGa                >  1:7553542/1‑36 (MQ=255)
                      aaaaaaacccgccACCAGTAACGCGATCCAGGCGAt               <  1:4581517‑M2/23‑1 (MQ=255)
                       aaaagacccgccACCAGTAACGCGATCCAGGCGATa              <  1:6864921‑M2/24‑1 (MQ=255)
                        caAGAACCGCCACCAGTAACGCGATCCAGGCGATAc             >  1:8311565/1‑36 (MQ=255)
                          aGAACCGCCACCAGTAACGCGATCCAGGCGATACTc           >  1:2180606/1‑36 (MQ=255)
                            acccgccACCAGTAACGCGATCCAGGCGATACTCAg         <  1:3255767‑M2/29‑1 (MQ=255)
                            aaCCGCCACCAGTAACGCGATCCAGGCGATACTCAg         >  1:5946362/1‑36 (MQ=255)
                            aaCCGCCACCAGTAACGCGATCCAGGCGATACTCAg         <  1:3686867/36‑1 (MQ=255)
                             aCCGCCACCAGTAACGCGATCCAGGCGATACTCAGt        <  1:1830745/36‑1 (MQ=255)
                               cgccACCAGTAACGCGATCCAGGCGATACTCAGTAt      >  1:1037231‑M2/5‑36 (MQ=255)
                               cgccACCAGTAACGCGATCCAGGCGATACTCAGTAt      <  1:5524367‑M2/32‑1 (MQ=255)
                               cgccACCAGTAACGCGATCCAGGCGATACTCAGTAt      <  1:424769‑M2/32‑1 (MQ=255)
                               cgccACCAGTAACGCGATCCAGGCGATACTCAGTAt      <  1:6481352‑M2/32‑1 (MQ=255)
                               cgccACCAGTAACGCGATCCAGGCGATACTCAGTAt      <  1:3373305‑M2/32‑1 (MQ=255)
                                gccACCAGTAACGCGATCCAGGCGATACTCAGTATg     <  1:3596840‑M2/33‑1 (MQ=255)
                                gccACCAGTAACGCGATCCAGGCGATACTCAGTATg     <  1:4635656‑M2/33‑1 (MQ=255)
                                 ccACCAGTAACGCGATCCAGGCGATACTCAGTATgg    <  1:2324755‑M2/34‑1 (MQ=255)
                                 ccACCAGTAACGCGATCCAGGCGATACTCAGTATgg    <  1:7462574‑M2/34‑1 (MQ=255)
                                 ccACCAGTAACGCGATCCAGGCGATACTCAGTATgg    >  1:1040412‑M2/3‑36 (MQ=255)
                                   accaGTAACTCGATCCAGGCGATACTCAGTATGGGa  <  1:8209832/36‑1 (MQ=255)
                                   accaGTAACGCGATCCAGGCGATACTCAGTATGGGa  <  1:7870536/36‑1 (MQ=255)
                                   accaGTAACGCGATCCAGGCGATACTCAGTATGGGa  <  1:7381522/36‑1 (MQ=255)
                                   accaGTAACGCGATCCAGGCGATACTCAGTATGGGa  >  1:835230/1‑36 (MQ=255)
                                   |                                   
AGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGA  >  REL606/3725679‑3725749

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG