New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 287442124 (0.450)9 (0.170) 4/60 NT 21.7% coding (780/936 nt) lysR DNA‑binding transcriptional dual regulator
?REL606 3419921 = 41 (0.660)coding (282/573 nt) ppiA peptidyl‑prolyl cis‑trans isomerase A (rotamase A)

CGCAGGCCGTTATCGGCTTCATTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCGGTGAAACC  >  REL606/3419886‑3419956
                                   |                                   
tagattatgcggcaagcggtttagtggtgcggcggg                                     >  1:6786511‑M2/36‑36 (MQ=255)
tagattatgcggcaagcggtttagtggtgcggcggg                                     >  1:816826‑M2/36‑36 (MQ=255)
 gcAGGCCGTTGTCGGCTTCATTTTTGATTGGCGggt                                    <  1:1844714/36‑1 (MQ=255)
  gattatgcggcaagcggtttagtggtgcggcggggt                                   >  1:2219883‑M2/34‑34 (MQ=255)
   aGGCCGTTATCGGCTTCATTTTTGATTGGCGgggtt                                  >  1:1437123/1‑36 (MQ=255)
    ttatgcggcaagcggtttagtggtgcggcgggtttg                                 >  1:5245034‑M2/32‑36 (MQ=255)
    ttatgcggcaagcggtttagtggtgcggcgggtggg                                 >  1:2067990‑M2/32‑33 (MQ=255)
    ggCCGTTATCGGCTTCATTTTTGATTGGCGgggttt                                 >  1:3000235/1‑35 (MQ=255)
     tatgcggcaagcggtttagtggtgcggcgggtttgt                                >  1:7528231‑M2/31‑35 (MQ=255)
      ccGTTATCGGCTTCATTTTTGATTGGCGggtttggt                               <  1:1083506/36‑1 (MQ=255)
      atgcggcaagcggtttagtggtgcggcgggtttgtg                               >  1:2960693‑M2/30‑34 (MQ=255)
       tgcggcaagcggtttagtggtgcggcgggtttggtt                              >  1:897566‑M2/29‑36 (MQ=255)
       cGTTATCGGCTTCATTTTTGATTGGCGggtttggtt                              <  1:1843654/36‑1 (MQ=255)
       cGTTATCGGCTTCATTTTTGATTGGCGggtttggtt                              <  1:5695022/36‑1 (MQ=255)
       cGTTATCGGCTTCATTTTTGATTGGCGggtttggtt                              <  1:3114034/36‑1 (MQ=255)
        gTTATCGGCTTCATTTTTGATTGGCGggtttggttt                             <  1:6738048/36‑1 (MQ=255)
         ttATCGGCTTCATTTTTGATTGGCGGGTTTGGtttt                            <  1:423850/36‑1 (MQ=255)
         cggcaagcggtttagtggtgcggcggGTTTGGtttt                            >  1:3865290‑M2/27‑36 (MQ=255)
          tATCGGCTTCATTTTTGATTGGCGGGTTTGGttttt                           <  1:1623189/36‑1 (MQ=255)
          tATCGGCTTCATTTTTGATTGGCGGGGTTTTttttt                           >  1:3749586/1‑36 (MQ=25)
           aTCGGCTTCATTTTTGATTGGCGGGTTTGGtttttt                          <  1:4751621/36‑1 (MQ=255)
           aTCGGCTTCATTTTTGATTGGCGGGTTTGGtttttt                          <  1:6219804/36‑1 (MQ=255)
             cGGCTTCATTTTTGATTGGCGGGGTTTTtttttttt                        >  1:5169137/1‑34 (MQ=21)
              ggCTTCATTTTTGATTGGCGGGTTTTGttttttttt                       >  1:7937565/1‑33 (MQ=38)
              ggCTTCATTTTTGATTGGCGGGTTTTGttttttttt                       >  1:35736/1‑33 (MQ=38)
              ggCTTCATTTTTGATTGGCGGGGTTTGttttttttt                       >  1:6245006/1‑33 (MQ=25)
               gCTTCATTTTTGATTGGCGGGTTTGGTTTTTTctgc                      <  1:131910/36‑1 (MQ=255)
               gCTTCATTTTTGATTGGCGGGTTTGGTTTTTTctgc                      <  1:5712921/36‑1 (MQ=255)
                cTTCATTTTTGATTGGCGGGTTTGGTTTTTTctgct                     <  1:3985106/36‑1 (MQ=255)
                cTTCATTTTTGATTGGCGGGTTTGGTTTTTTctgct                     <  1:3286073/36‑1 (MQ=255)
                 ttCATTTTTGATTGGCGGGTTTGGTTTTTTctgctg                    <  1:3613063/36‑1 (MQ=255)
                   cATTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCa                  <  1:2238809/36‑1 (MQ=255)
                   cATTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCa                  <  1:6053067/36‑1 (MQ=255)
                    aTTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCAt                 <  1:4038485/36‑1 (MQ=255)
                    aTTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCAt                 <  1:7580341/36‑1 (MQ=255)
                     tttttGATTGGCGGGTTTGGTTTTTTCTGCTGCATc                <  1:8021327/36‑1 (MQ=255)
                      ttttGATTGTCGTGTTTGGTTTTTTCTGCTGCATCt               <  1:6045993/36‑1 (MQ=37)
                      ttttGATTGGCGGGTTTGGTTTTTTCTGCTGCATCt               <  1:5365604/36‑1 (MQ=255)
                      ttttGATTGGCGGGTTGTGTTTTTTTTTCTGGAtat               >  1:6444560/1‑34 (MQ=9)
                       tttGATTGGCGGGTTTGGTTTTTTCTGCTGCATCTg              <  1:5856324/36‑1 (MQ=255)
                         tGATTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCt            <  1:95891/36‑1 (MQ=255)
                         tGATTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCt            <  1:4542891/36‑1 (MQ=255)
                          gATTGGCGGGTTTTGTTTTTTTTTGTTCATCTGTTc           >  1:7273890/1‑36 (MQ=9)
                          gATTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTc           <  1:1198281/36‑1 (MQ=255)
                           aTTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCg          <  1:4986288/36‑1 (MQ=255)
                           aTTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCg          <  1:2144785/36‑1 (MQ=255)
                            ttGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTctt         >  1:4073323/1‑34 (MQ=255)
                            ttGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCgg         <  1:1304049/36‑1 (MQ=255)
                             tGGCGGGTTTGGTTTTTTCTTCTTCATCTGCTCGGt        >  1:7558127/1‑36 (MQ=37)
                             tGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCGGt        <  1:6496209/36‑1 (MQ=255)
                               gcggGTTTGGTTTTTTCTGCTGCATCTGCTCGGTGa      >  1:6163135‑M2/5‑36 (MQ=255)
                                  gGTTTGGTTTTTTCTGCTGCATCTGCTCGGTGAAAc   <  1:5540143‑M2/35‑1 (MQ=255)
                                   gtttggtttTTTCTGCTGCATCTGCTCGGTGAAAcc  <  1:1017036/36‑1 (MQ=255)
                                   |                                   
CGCAGGCCGTTATCGGCTTCATTTTTGATTGGCGGGTTTGGTTTTTTCTGCTGCATCTGCTCGGTGAAACC  >  REL606/3419886‑3419956

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG