New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 353057743 (0.800)11 (0.200) 5/62 NT 22.0% intergenic (‑234/+37) livJ/rpoH leucine/isoleucine/valine transporter subunit/RNA polymerase sigma factor
?REL606 4043869 = 35 (0.580)coding (155/1404 nt) yihO predited transporter

AATTGATTATTGTAGAGGCCCAAAAAACAAAAACCCCG...................................  >  REL606/3530540‑3530577
..................................CCCGCCATAGTAAGCTGGCATCCCTAATTCATCGGTATA  >  REL606/4043869‑4043903
                                                                         
                     AAAAAAAAAAAACCCCGCCATAGTAAGCTGGCATCC                  <  1:3197822/36‑1 (MQ=12)
                      AAAAAAAAAAACCCCGCCATAGTAAGCTGGCATCCC                 <  1:3327086/36‑1 (MQ=0)
                        AAAAAAAAACCCCGCCATAGTAAGCTGGCATCCCTA               <  1:261386/36‑1 (MQ=0)
                          aagAAAACCCCGCCATAGTAAGCTGGCATCCCTAAT             <  1:5406954/33‑1 (MQ=0)
                          aaAAAAACCCCGCCATAGTAAGCTGGCATCCCTAAT             <  1:4004751/34‑1 (MQ=17)
                           agAAAACCCCGCCATAGTAAGCTGGCATCCCTAATT            <  1:21589/34‑1 (MQ=1)
                           aAAAAACCCCGCCATAGTAAGCTGGCATCCCTAATT            <  1:7506033/35‑1 (MQ=32)
                            aatAACCCCGCCATAGTAAGCTGGCATCCCTAATTC           <  1:7573847/33‑1 (MQ=0)
                                ACCCCGCCATAGTAAGCTGGCATCCCTAATTCATCG       <  1:3960744/36‑1 (MQ=1)
                                 CCCCGCCATAGTAAGCTGGCATCCCTAATTCATCGG      <  1:1093881/36‑1 (MQ=1)
                                 CCCCGCCATAGTAAGCTGGCATCCCTAATTCATCGG      <  1:1815221/36‑1 (MQ=1)
                                                                         
AATTGATTATTGTAGAGGCCCAAAAAACAAAAACCCCG...................................  >  REL606/3530540‑3530577
..................................CCCGCCATAGTAAGCTGGCATCCCTAATTCATCGGTATA  >  REL606/4043869‑4043903

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 27 ≤  ATCG  < 35 ≤  ATCG  < 37 ≤  ATCG