Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,764,698 IS1 (–) +9 bp 52.5% intergenic (‑318/‑7) ppsA ← / → ydiA phosphoenolpyruvate synthase/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241257 =NA (NA)18 (0.310) 18/66 NT 48.6% noncoding (1/768 nt) IS1 repeat region
?REL606 1764698 = 19 (0.440)intergenic (‑318/‑15) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
* ? REL606 = 176470619 (0.470)24 (0.420) 22/66 NT 55.8% intergenic (‑326/‑7) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
?REL606 = 1974039 NA (NA)noncoding (768/768 nt) IS1 repeat region

ATTATTACATTTCATGCCATTTTTAATATAGATTGGGTGATGCTGCCAACTTACTGATTTAGTGT  >  REL606/241222‑241286
                                   |                             
cgatcaacagcattatccattttgttcttcccgtgg                               <  1:5046047‑M1/1‑1 (MQ=255)
attattACATTTCATGCCATTTTTAATATAGATTgg                               >  1:241455/1‑36 (MQ=255)
 ttattaCATTTCCTGCCATTTTTAATATAGATTggg                              <  1:5693582/36‑1 (MQ=255)
 ttattaCATTTCATGCCATTTTTAATATAGATTggt                              >  1:5771139/1‑35 (MQ=255)
 ttattaCATTTCATGCCATTTTTAATATAGATTggg                              >  1:2343056/1‑36 (MQ=255)
  tattaCATTTCATGCCATTTTTAATATAGATTGGGt                             >  1:6342618/1‑36 (MQ=255)
  atcaacagcattatccattttgttcttcccgtgGGt                             <  1:7325812‑M1/3‑1 (MQ=255)
    ttaCATTTCATGCCATTTTTAATATAGATTGGGTGa                           <  1:2582316/36‑1 (MQ=255)
    ttaCATTTCATGCCATTTTTAATATAGATTGGGTGa                           >  1:2107767/1‑36 (MQ=255)
    ttaCATATCATGCCATTTTTAATATAGATTGGGTGa                           >  1:7670589/1‑36 (MQ=255)
     aacagcattatccattttgttcttcccgtgGGTGAt                          <  1:2073157‑M1/6‑1 (MQ=255)
      acagcatcatccattttgttcttcccgtgGGTGAtg                         <  1:7012737‑M1/7‑1 (MQ=255)
      aCATTTCATGCCATTTTTAATATAGATTGGGTGAtg                         >  1:3265027/1‑36 (MQ=255)
      aCATTTCATGCCATTTTTAATATAGATTGGGTGAtg                         >  1:2059412/1‑36 (MQ=255)
       cagcattatccattttgttcttcccgtgGGTGAtgc                        >  1:6176105‑M1/29‑36 (MQ=255)
       cagcattatccattttgttcttcccgtgGGTGAtgc                        <  1:949364‑M1/8‑1 (MQ=255)
       cATTTCATGCCATTTTTAATATAGGTTGGGTGAtgc                        <  1:3408629/36‑1 (MQ=255)
       cATTTCATGCCATTTTTAATATAGATTGGGTGAtgc                        <  1:164976/36‑1 (MQ=255)
       cATTTCATGCCATTTTTAATATAGATTGGGTGAtgc                        >  1:4624390/1‑36 (MQ=255)
        agcattatccattttgttcttcccgtgGGTGAtgct                       >  1:7169104‑M1/28‑36 (MQ=255)
        aTTTCATGCCATTTTTAATATAGATTGGGTGAtgct                       <  1:3251552/36‑1 (MQ=255)
         tttCATGCCATTTTTAATATAGATTGGGTGAtgctg                      <  1:6917158/36‑1 (MQ=255)
         tttCATGCCATTTTTAATATAGATTGGGTGAtgctg                      >  1:5041409/1‑36 (MQ=255)
         tttCATGCCATTTTTAATATAGATTGGGTGAtgctg                      >  1:3468921/1‑36 (MQ=255)
         tctCATGCCATTTTTAATATAGATTGGGTGAtgctg                      >  1:7452785/3‑36 (MQ=255)
          ttCATGCCATTTTTAATATAGATTGGGTGAtgctgc                     >  1:3129212/1‑36 (MQ=255)
          cattatccattttgttcttcccgtgGGTGAtgctgc                     >  1:6900385‑M1/26‑36 (MQ=255)
           attatccattttgttcttcacgtgGGTGATGCTGcc                    <  1:1920264‑M1/12‑1 (MQ=255)
              atccattttgttcttcccgtgGGTGATGCTGCCAAc                 >  1:4523025‑M1/22‑36 (MQ=255)
                ccattttgttcttcccgtgGGTGATGCTGCCAACtt               <  1:3474185‑M1/17‑1 (MQ=255)
                ccATTTTTAATATAGATTGGGTGATGCTGCCAACtt               >  1:2992660/1‑36 (MQ=255)
                 cATTTTTAATATAGATTGGGTGATGCTGCCAACTTa              <  1:7520284/36‑1 (MQ=255)
                 cATTTTTAATATAGATTGGGTGATGCTGCCAACTTa              >  1:5216204/1‑36 (MQ=255)
                  aTTTTTAATATAGATTGGGTGATGCTGCCAACTTAc             <  1:7645810/36‑1 (MQ=255)
                  aTTTTTAATATAGATTGGGTGATGCTGCCAACTTAc             <  1:5501513/36‑1 (MQ=255)
                   tttttAATATAGATTGGGTGATGCTGCCAACTTACt            >  1:265190/1‑36 (MQ=255)
                   tttttAATATAGATTGGGTGATGCTGCCAACTTACt            >  1:123378/1‑36 (MQ=255)
                   tttttAATATAGATTGGGTGATGCTGCCAACTTACt            <  1:7865782/36‑1 (MQ=255)
                    ttttAATATAGATTGGGTGATGCTGCCAACTTACTg           >  1:186539/1‑36 (MQ=255)
                    ttttAATATAGATTGGGTGATGCTGCCAACTTACTg           <  1:5947962/36‑1 (MQ=255)
                    tttgttcttcccgtgGGTGATGCTGCCAACTTACTg           <  1:7909033‑M1/21‑1 (MQ=255)
                     ttgttcttcccgtgGGTGATGCTGCCAACTTACTGa          <  1:2978246‑M1/22‑1 (MQ=255)
                      ttAATATAGATTGGTTGATGCTGCCAACTTACTGAt         <  1:1362896/36‑1 (MQ=255)
                      ttAATATAGATTGGGTGATGCTGCCAACTTACTgct         >  1:186284/1‑34 (MQ=255)
                      ttAATATAGATTGGGTGATGCTGCCAACTTACTGAt         <  1:3410928/36‑1 (MQ=255)
                      ttAATATAGATTGGGTGATGCTGCCAACTTACTGAt         >  1:1862988/1‑36 (MQ=255)
                       tAATATAGATTGGGTGATGCTGCCAACTTACTGAtt        >  1:1164778/1‑36 (MQ=255)
                        aaTATAGATTGGGTGATGCTGCCAACTTACTGAttt       <  1:5481903/36‑1 (MQ=255)
                         tcttcccgtgGGTGATGCTGCCAACTTACTGATTTa      <  1:4218586‑M1/26‑1 (MQ=255)
                         atatAGATTGGGTGATGCTGCCAACTTACTGATTTa      >  1:6855652/1‑36 (MQ=255)
                         atatAGATTGGGTGATGCTGCCAACTTACTGATTTa      >  1:5155949/1‑36 (MQ=255)
                          tataGATTGGGTGATGCTGCCAACTTACTGATTTAg     >  1:475364/1‑36 (MQ=255)
                          tataGATTGGGTGATGCTGCCAACTTACTGATTTAg     <  1:3471798/36‑1 (MQ=255)
                          tataGATTGGGTGATGCTGCCAACTTACTGATTTAg     >  1:7902857/1‑36 (MQ=255)
                          cttcccgtgGGTGATGCTGCCAACTTACTGATTTAg     <  1:790364‑M1/27‑1 (MQ=255)
                          cttcccgtgGGTGATGCTGCCAACTTACTGATTTAg     >  1:640076‑M1/10‑36 (MQ=255)
                           ttcccgtgGGTGATGCTGCCAACTTACTGATTTAgt    <  1:4784487‑M1/28‑1 (MQ=255)
                           ataGATTGGGTGATGCTGCCAACTTACTGATTTAgt    <  1:6860459/36‑1 (MQ=255)
                           ataGATTGGGTGATGCTGCCAACTTACTGATTTAgt    >  1:7725373/1‑36 (MQ=255)
                           ataGATTGGGTGATGCTGCCAACTTACTGATTTAgt    >  1:2458399/1‑36 (MQ=255)
                            tcccgtgGGTGATGCTGCCAACTTACTGATTTAgtg   >  1:6112959‑M1/8‑36 (MQ=255)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAttg   <  1:1097389/36‑1 (MQ=255)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAgtg   >  1:6338461/1‑36 (MQ=40)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAgtg   <  1:7760102/36‑1 (MQ=40)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAgtg   >  1:1483966/1‑36 (MQ=40)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAgtg   <  1:1402581/36‑1 (MQ=40)
                            taGATTGGGTGATGCTGCCAACTTACTGATTTAgtg   >  1:794411/1‑36 (MQ=40)
                             aGATTGGGTGATGCTGCCAACTTACTGATTTAgtgt  <  1:4154226/36‑1 (MQ=38)
                                   |                             
ATTATTACATTTCATGCCATTTTTAATATAGATTGGGTGATGCTGCCAACTTACTGATTTAGTGT  >  REL606/241222‑241286

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG