New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1290519 =16 (0.450)5 (0.140) 3/56 NT 29.4% coding (484/1014 nt) hnr response regulator of RpoS
?REL606 = 1977651 8 (0.180)coding (175/1005 nt) yedY hypothetical protein

TAGCTGGTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGC  >  REL606/1977617‑1977685
                                  |                                  
tcgCTTGTTTAAAGGTAACGATCGCCCAcccgcccc                                   <  1:5464153/34‑1 (MQ=25)
 aGCTGGTTTAAAGGGAACGATCGCCCACCCGCCCCC                                  <  1:2315641‑M1/36‑1 (MQ=255)
 aGCTGGTTTAAAGGGAACGATCGCCCACCCGCCCCC                                  <  1:3679527‑M1/36‑1 (MQ=255)
 aGCTGGTTTAAAGGGAACGATCGCCCACCCGCCCCC                                  <  1:5341293‑M1/36‑1 (MQ=255)
    tGGTTTAAAGGGAACGATCGCCCACCCGCCCCCGCC                               >  1:1364449‑M1/1‑36 (MQ=255)
    tGGTTTAAAGGGAACGATCGCCCACCCGCCCCCGCC                               <  1:412885‑M1/36‑1 (MQ=255)
           aaGGGAACGATCGCCCACCCGCCCCCGCCGGAAAAc                        <  1:3798791/36‑1 (MQ=255)
           aaGGGAACGATCGCCCACACGCCCACGACGGaaaaa                        >  1:5717829/1‑35 (MQ=21)
            aGGGAACGATTGCCCACCTGTCCTCGCCGGaaatgc                       >  1:2779341/1‑33 (MQ=16)
             gggAACGATCGCCCACCCGCCCCCGCCGGAAAACCg                      >  1:2256092/1‑36 (MQ=255)
              ggAACGATCGCCCACCCGCCCCCCCCCGAAAAcccc                     >  1:4453452/1‑34 (MQ=37)
                   gATCGCCCACCCGCCCCCGCAGGAACACCGCGggcg                >  1:4121015/1‑34 (MQ=21)
                         ccACCCCCCCccgccggttcagcaggtgatttccca          >  1:1666277‑M2/1‑10 (MQ=255)
                         ccAACCGCCCCCGCCGGttacatcgcctttgtcgat          <  1:1515258‑M1/36‑20 (MQ=255)
                          cACCCGCCCCCGCCGGttacatcgcctttgtcgatc         <  1:5062073‑M1/36‑21 (MQ=255)
                           ccccccccccgccggttcagcaggtgatttcccatt        >  1:639033‑M2/2‑8 (MQ=255)
                           agccgcccccgccggttacatcgcctttgtcgatcg        <  1:2482730‑M1/34‑22 (MQ=255)
                           aCCCGCCCccgccggttcagcaggtgatttcccatt        >  1:5918961‑M2/1‑8 (MQ=255)
                           aCCCCCCCccgccggttcagcaggtgatttcccatt        >  1:616866‑M2/1‑8 (MQ=255)
                            cccgcccccgccGGttacatcgcctttgtcgatcgt       <  1:635301‑M1/36‑23 (MQ=255)
                            cccccccccgccggttcagcaggtgatttcccattg       >  1:5566752‑M2/1‑7 (MQ=255)
                                 ccccgccGTttacatcgcctttgtcgatcgtcatcc  <  1:1254740‑M1/36‑28 (MQ=255)
                                 ccccgccGGttacatcgcctttgtcgaccgtcatcc  <  1:2509846‑M1/36‑28 (MQ=255)
                                 ccccgccGGAAAGCCGCTGGAGTTCAGCAAGCCTgc  <  1:4423328/36‑1 (MQ=255)
                                  |                                  
TAGCTGGTTTAAAGGGAACGATCGCCCACCCGCCCCCGCCGGAAAACCGCTGGAGTTCAGCAAGCCTGC  >  REL606/1977617‑1977685

Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 12 ≤  ATCG  < 25 ≤  ATCG  < 37 ≤  ATCG