Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,266,652 | T→A | 7.7% | intergenic (‑348/‑45) | acs ← / → nrfA | acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,266,652 | 0 | T→A | 7.7% | 2.4 ‑3.7 ‑0.0 | 39 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑coenzyme A synthetase/nitrite reductase, formate‑dependent, cytochrome |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (27/9): total (27/12) | ||||||||||
Fisher's exact test strand distribution p-value = 2.41e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.62e-01 |
GACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGAT > REL606/4266617‑4266687
|
gACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAAt > 1:4766895/1‑36 (MQ=255)
aCAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATa < 1:936185/36‑1 (MQ=255)
aCAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATa > 1:1092498/1‑36 (MQ=255)
cAGTGTAGGTGCGGTTACTTTCGTGAAAAACAATaa < 1:3511098/36‑1 (MQ=255)
cAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaa < 1:4485273/36‑1 (MQ=255)
cAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaa < 1:3836543/36‑1 (MQ=255)
aGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa > 1:3516446/1‑36 (MQ=255)
aGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa > 1:1514912/1‑36 (MQ=255)
aGTGTAGGTGCGGTTACTGTCGTGAAAAACAATaaa < 1:150647/36‑1 (MQ=255)
gtgtAGGTGCGGTTACTGTCGTGAAAAACAATacac > 1:1031598/1‑33 (MQ=255)
gtgtAGGTGCGGTTACTGTCGTGAAAAACAATaaaa < 1:2082630/36‑1 (MQ=255)
gtgtAGGGGCGGTTACTGTCGTGAAAAACAATaaaa > 1:3300189/1‑36 (MQ=255)
gtAGGTGCGGTTACTGTCGTTAAAAACAATAAAAAc < 1:1351959/36‑1 (MQ=255)
tAGGTGCGGTTACTGTCGTGAAAAACAATAAAAAcc < 1:4924012/36‑1 (MQ=255)
tAGGTGCGGTTACTGTCGTGAAAAACAATAAAAAcc < 1:4514062/36‑1 (MQ=255)
aGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCg > 1:1387587/1‑36 (MQ=255)
aGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCg > 1:802081/1‑36 (MQ=255)
gTGCGGTTACTGTCGTGAAAAACAATAAAAACCGcc > 1:1230607/1‑36 (MQ=255)
tGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCa > 1:5237752/1‑36 (MQ=255)
gTTACTGTCGTGAAAAACAATAAAAACCGCCATTGc > 1:499179/1‑36 (MQ=255)
aCTGTCGTGAAAAACAATAAAAACCGCCATTGcaac > 1:5565534/1‑36 (MQ=255)
tGTCGTGAAAAACAATAAAAACCGCCATTGcaacaa > 1:1708651/1‑36 (MQ=255)
tCGTGAAAAACAATAAAAACCGCCATTGCAACAATg > 1:2144126/1‑36 (MQ=255)
cGTGAAAAACAATAAAAACCGCCATTGCAACAATgg > 1:1368058/1‑36 (MQ=255)
gTGAAAAACAATAAAAACCGCCATTGCAACAATGgc > 1:1085601/1‑36 (MQ=255)
aaaaaaaaAAAAAAAACCCGCCATTGCAACAATGgc < 1:4577481/33‑1 (MQ=16)
gAAAAACAATAAAAACCGCCATGGCAACAATGgcgc > 1:3607579/1‑36 (MQ=255)
aaaaaCAATAAAAACCGCCATTGCAACAATGGCGCa > 1:15115/1‑36 (MQ=255)
aaaaaCAATAAAAACCGCCATTGCAACAATGGCGCa > 1:2846415/1‑36 (MQ=255)
aaaaaAAAAAAAAACCGCCATTGCAACAATGGCGCa < 1:243449/36‑1 (MQ=37)
aaaaCAATAAAAACCGCCATTGCAACAATGGCGCaa > 1:3685319/1‑36 (MQ=255)
aaaaAAAAAAAAACCGCCATTGCAACAATGGCGCaa < 1:1115865/36‑1 (MQ=37)
aaCAATAAAAACCGCCATTGCAACAATGGCGCAAtt > 1:4731755/1‑36 (MQ=255)
aaCAATAAAAACCGCCATTGCAACAATGGCGCAAtt > 1:2460680/1‑36 (MQ=255)
aCAATAAAAACCGCCATTGCAACAATGGCGCAATTc > 1:4654501/1‑36 (MQ=255)
aCAATAAAAACCGCCATTGCAACAATGGCGCAATTc > 1:4370186/1‑36 (MQ=255)
cAATAAAAACCGCCATCGCAACAATGGCGCAATTCg > 1:2218423/1‑36 (MQ=255)
aaTAAAAACCGCCATTGCAACAATGGCGCAATTCgg > 1:2692569/1‑36 (MQ=255)
aTAAAAACCGCCATTGCAACAATGGCGCAATTCGGa > 1:1452443/1‑36 (MQ=255)
aTAAAAACCGCCATTGCAACAAGGGCGCAATACggt > 1:802492/1‑35 (MQ=37)
tAAAAACCGCCATTGCAACAATGGCGCAATTCGGAt > 1:4733469/1‑36 (MQ=255)
tAAAAACCGCCATTGCAACAATGGCGCAATTCGGAt > 1:4968207/1‑36 (MQ=255)
tAAAAACCGCCATTGCAACAATGGCGCAACTCGGAt > 1:1292099/1‑36 (MQ=255)
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GACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGAT > REL606/4266617‑4266687
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|