Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,134,189 | G→T | 14.0% | D414Y (GAT→TAT) | yegT → | predicted nucleoside transporter |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,134,189 | 0 | G→T | 14.0% | 3.5 ‑3.7 0.0 | 60 | 1240 | yegT | predicted nucleoside transporter |
Reads supporting (aligned to +/- strand): new base (11/0): ref base (31/18): total (42/18) | ||||||||||
Fisher's exact test strand distribution p-value = 2.45e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AATCCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAA > REL606/2134154‑2134224
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aaTCCGACAACGAAATTACGGCTATCAAGGTCgatg < 1:3687779/36‑1 (MQ=255)
aTCCGACAACGAAATTACGGCTATCAAGGTCgatga < 1:7630526/36‑1 (MQ=255)
aTCCGACAACGAAATTACGGCTATCAAGGTCgatga > 1:3888543/1‑36 (MQ=255)
aTCCGACAACGAAATTACGGCTATCAAGGTCgatga < 1:1460896/36‑1 (MQ=255)
aTCCGACAACGAAATTACGGCTATCAAGGTCgatga > 1:7750032/1‑36 (MQ=255)
tCCGACAACGAAATTACGGCTATCAAGGTCgattat > 1:7718618/1‑36 (MQ=255)
tCCGACAACGAAATTACGGCTATCAAGGTCgatgat < 1:5785329/36‑1 (MQ=255)
ccGACAACGAAATTACGGCTATCAAGGTCGATGATc < 1:2287067/36‑1 (MQ=255)
cGACAACGAAATTACGGCTATCAAGGTCGATGATcg < 1:3175022/36‑1 (MQ=255)
cGACAACGAAATTACGGCTATCAAAGTCGATTATcg > 1:1640089/1‑36 (MQ=38)
gACAACGAAATTACGGCTATCAAGGTCGATTATcgc > 1:5136682/1‑36 (MQ=255)
aCAACGAAATTACGGCTATCAAGGTCGATGATcgcg > 1:2172804/1‑36 (MQ=255)
aCAACGAAATTACGGCTATCAAGGTCGATGATcgcg > 1:5693259/1‑36 (MQ=255)
cAACGAAATTACGGCTATCAAGGTCGATGATCGCGa < 1:8049419/36‑1 (MQ=255)
aaagAAATTACGGCTATCAAGGTCGATGATCGCGat < 1:671538/33‑1 (MQ=255)
aaCGAAATTACGGCTAACAAGGTCGATTATAGCGat > 1:2087551/1‑36 (MQ=25)
aCGAAATTACGGCTATAAAGGTCGATGATTGCGata > 1:1320227/1‑36 (MQ=37)
aCGAAATTACGGCTAGCAAGGTCGATTATCGCGata > 1:2013941/1‑36 (MQ=38)
aCGAAATTAAGGCTATCAAGGTCGATGATCGCGata < 1:7129047/36‑1 (MQ=255)
cGAAATTACGGCTATCAAGGTCGATTATCGCGatat > 1:1390132/1‑36 (MQ=255)
gAAATTACGGCTATCAAGGTCGATGATCGCGATAtt < 1:3288031/36‑1 (MQ=255)
gAAATTACGGCTATCAAGGTCGAGGAAAGCGatagt > 1:1941230/1‑34 (MQ=21)
gAAATTACGGCTATCAAAGACGATGTNNNCGCTAtt > 1:1691984/1‑36 (MQ=255)
aaaTTACGGCTATCAAGGTCGATGATCGCGATATTg < 1:7119049/36‑1 (MQ=255)
aaTTACGGCTATCATTTTTGATGATCGGGATATTGc < 1:6763625/36‑1 (MQ=12)
aaTTACGGCTATCAAGGTCGATTATTGCGGTAtttc > 1:4697152/1‑34 (MQ=21)
aaTTACGGCTATCAAGGTCGATTATCGCGATAtttc > 1:4925467/1‑34 (MQ=38)
aTTACGGCTATCACGGACTATGTTCGCGATTTTgtg > 1:2274281/1‑34 (MQ=12)
aTTACGGCTATCAAGGTCGATTATCGCGATATTGCg > 1:836526/1‑36 (MQ=255)
ttACGGCTATCAAGGTCGATTATCGCGATATTGCGt > 1:3843934/1‑36 (MQ=255)
ttACGGCTATCAAGGTCGATTATCGCGATATTGCGt > 1:1629216/1‑36 (MQ=255)
ttACGGCTATCAAGGTCGATGATCGCGATATTGCGt > 1:2827754/1‑36 (MQ=255)
ttACGGCTATCAAGGTCGATGATCGCGATATTGCGt > 1:8208782/1‑36 (MQ=255)
atACGGCTATCAAGGTCGATGATCGCGATATTGCGt < 1:2171519/35‑1 (MQ=255)
tACGGCTATCAAGGTCGATGATCGCGATATTGCGtt < 1:1488133/36‑1 (MQ=255)
aCGGCTATCAAGGTCGATTATCGCGATATTGCGTTg > 1:8244419/1‑36 (MQ=255)
aCGGCTATCAAGGTCGATGATCGCGATATTGCGTTg < 1:3696771/36‑1 (MQ=255)
aCGGCTATCAAGGTCGATGATCGCGATATTGCGTTg > 1:591503/1‑36 (MQ=255)
cGGCTATCAAGGTCGATGATCGAGATATTGCGTTGa > 1:719234/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:7190631/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:6155533/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac < 1:3562689/36‑1 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:1194623/1‑36 (MQ=255)
ggCTATCAAGGTCGATGATCGCGATATTGCGTTGac > 1:1201628/1‑36 (MQ=255)
gCTATCAAGGTCGATGATCGCGATATTGCGTTGaca > 1:8027078/1‑36 (MQ=255)
cTATCAAGGTCGATGATCGCGATATTGCGTTGacac < 1:6847383/36‑1 (MQ=255)
tATCAAGGTCGATGATCGCGATATTGCGTTGAcaca > 1:1558738/1‑36 (MQ=255)
tATCAAGGTCGATGATCGCGATATTGCGTTGAcaca > 1:3948332/1‑36 (MQ=255)
tATCAAGGTCGATGATCGCGATATTGCGTTGAcaca < 1:131666/36‑1 (MQ=255)
aTCAAGGTCGATGATCGCGATATTGCGTTGACACaa > 1:4835350/1‑36 (MQ=255)
aTCAAGGTCGATGATCGAGATATTGCGTTGACACaa > 1:4841353/1‑36 (MQ=255)
tCAAGGTCGATGATCGCGATATTGCGTTGACACAAg > 1:7128117/1‑36 (MQ=255)
tCAAGGTCGATGATCGCGATATTGCGTTGACACAAg < 1:8389100/36‑1 (MQ=255)
tCAAGGTCGATGATCGCGATATTGCGTTGACACAAg > 1:952285/1‑36 (MQ=255)
cAAGGTCGATGATCGCGATATTGCGTTGACACAAgg > 1:6519712/1‑36 (MQ=255)
cAAGGTCGATGATCGCGATATTGCGTTGACACAAgg > 1:7549794/1‑36 (MQ=255)
cAAGGTCGATGANNGNGATANTGCGTTGACACAAgg > 1:2312983/1‑36 (MQ=39)
aaGGTCGATGATCGCGATATTGCGTTGACACAAggg > 1:3798937/1‑36 (MQ=255)
aaGGTCGATGATCGCGATATTGCGTTGACACAAggg > 1:7645486/1‑36 (MQ=255)
aGGTCGATGATCGCGATATTGCGTTGACACAAgggg < 1:5297737/36‑1 (MQ=255)
aGGTCGATGATCGCGATATTGCGTTGACACAAgggg < 1:549033/36‑1 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa < 1:2848930/36‑1 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa > 1:6917759/1‑36 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa > 1:1365492/1‑36 (MQ=255)
ggTCGATGATCGCGATATTGCGTTGACACAAGGGGa > 1:5750009/1‑36 (MQ=255)
tCGATGATCGCGATATTGCGTTGACACAAGGGGAAg > 1:7793783/1‑36 (MQ=255)
cGATGATCGCGATATTGCGTTGACACAAGGGGAAGt > 1:7300032/1‑36 (MQ=255)
gatgatCGCGATATTGCGTTGACACAAGGGGAAGtt < 1:754376/36‑1 (MQ=255)
gatgatCGCGATATTGCGTTGACACAAGGGGAAGtt > 1:3707275/1‑36 (MQ=255)
atgatCGCGATATTGCGTTGACACAAGGGGAAGTTa > 1:7903832/1‑36 (MQ=255)
atgatCGCGATATTGCGTTGACACAAGGGGAAGTTa > 1:6904558/1‑36 (MQ=255)
tgatCGCGATATTGCGTTGACACAAGGGGAAGTTaa > 1:3300373/1‑36 (MQ=255)
gatCGCGATATTGCGTTGACACAAGGGGAAGTTaaa < 1:292464/36‑1 (MQ=255)
gatCGCGATATTGCGTTGACACAAGGGGAAGTTaaa > 1:5202761/1‑36 (MQ=255)
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AATCCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAA > REL606/2134154‑2134224
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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