Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,485,893 | 0 | G→T | 9.9% | 2.6 ‑9.5 0.0 | 78 | 787 | rtcB | hypothetical protein |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (9/0): ref base (21/48): total (30/48) | ||||||||||
Fisher's exact test strand distribution p-value = 7.85e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTCCA > REL606/3485858‑3485928
|
cATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTg < 1:4720394/36‑1 (MQ=255)
cATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTg < 1:3074282/36‑1 (MQ=255)
aTCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGc < 1:4517962/36‑1 (MQ=255)
tCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCg < 1:497388/36‑1 (MQ=255)
tCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCg < 1:6604081/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTTCgc > 1:4476701/1‑35 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGt < 1:1350235/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGt < 1:2218448/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGGCTGTCCGTTTTTTGTGt > 1:7222408/1‑36 (MQ=9)
gCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTa < 1:6671735/36‑1 (MQ=255)
gCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTa < 1:7762456/36‑1 (MQ=255)
ccAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTaa < 1:3052814/36‑1 (MQ=255)
aGCGTTTGTGGCTGTCTTGCCGTTTTTTTTGTAAtc > 1:4324457/1‑35 (MQ=12)
gCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGc < 1:7277385/36‑1 (MQ=255)
gCGTTTGTGGCTGGCTGTCCGTTTTCTTCGTAATgt > 1:4686068/1‑35 (MQ=18)
cGTTTGTGGCTGTTTTACCGTTTTCTTCGTTATGct > 1:946815/1‑36 (MQ=19)
cGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGct < 1:7175212/36‑1 (MQ=255)
gTTTGTGGCTGTCTTACCGTTTTTTTCGTAATGctt > 1:6073154/1‑35 (MQ=25)
gTTTGTGGCTGTCTGACCGTTTTCTTCGTAATTctt > 1:4013969/1‑35 (MQ=37)
gTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGctc < 1:754178/36‑1 (MQ=255)
tttGTGGCTGTCTGACCGTTTTTTTCGTAATGctct > 1:1630881/1‑36 (MQ=37)
tttGTGGCTGTCTGACCGTTTTCTGCGTAATGctct < 1:3750011/36‑1 (MQ=255)
tttGTGGCTGTCTGACCGTTTTCTGCGTAATGctct < 1:6471695/36‑1 (MQ=255)
ttGTGGCTGTCTGACCGTTTTTTTCGTTATTctttt > 1:5690625/1‑33 (MQ=12)
ttGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTg < 1:1958322/36‑1 (MQ=255)
ttGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTg < 1:6192724/36‑1 (MQ=255)
tgtgGCTGTCTGACCGTTTTTTTCGTAATTctcttc > 1:7602962/1‑34 (MQ=21)
tgtgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGc < 1:5842972/36‑1 (MQ=255)
gtgTCTGTCTGCCCGTTTTCTGCGTAATGCTCTGCa < 1:706937/36‑1 (MQ=37)
gtgGCTGTCTGACCGTTTTTTGCGTAATGCTCTGCa > 1:1848686/1‑36 (MQ=255)
gtgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCa < 1:5363104/36‑1 (MQ=255)
ttgCTGTCTGACCGTTTTCTGCGTAATGCTCTGCaa < 1:3372904/34‑1 (MQ=255)
tgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCaa < 1:719587/36‑1 (MQ=255)
tgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCaa > 1:2665072/1‑36 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt < 1:6053273/36‑1 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt < 1:971776/36‑1 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt < 1:2537304/36‑1 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt > 1:3452403/1‑36 (MQ=255)
gCTGTCTGACCGTTTTCTGCGTAATGCTCTTCAATg > 1:6238076/1‑36 (MQ=255)
gCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATg < 1:5464195/36‑1 (MQ=255)
gCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATg > 1:907555/1‑36 (MQ=255)
cTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGc < 1:1765254/36‑1 (MQ=255)
cTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGc < 1:1999494/36‑1 (MQ=255)
cTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGc > 1:575327/1‑36 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc < 1:2159979/36‑1 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc > 1:629078/1‑36 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc < 1:3284010/36‑1 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc < 1:4944220/36‑1 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc < 1:4192954/36‑1 (MQ=255)
gTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCg < 1:3233484/36‑1 (MQ=255)
tCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGt > 1:5444072/1‑36 (MQ=255)
cTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGtt < 1:1821618/36‑1 (MQ=255)
cTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGtt < 1:7018022/36‑1 (MQ=255)
cTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGtt > 1:7224733/1‑36 (MQ=255)
tGACCGTTTTCCGCGTAATGCTCTGCAATGCCGTTa > 1:6022008/1‑36 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc > 1:910407/1‑36 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc > 1:1772090/1‑36 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc > 1:5502921/1‑36 (MQ=255)
aCCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAcc > 1:1830794/1‑36 (MQ=255)
aCCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAcc < 1:5432951/36‑1 (MQ=255)
aCCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAcc > 1:7789920/1‑36 (MQ=255)
ccGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCa < 1:7832776/36‑1 (MQ=255)
cGTTTTCTGCGTAATGCTCTGCGATGCCGTTACCAc < 1:918843/36‑1 (MQ=255)
cGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCAc < 1:1757250/36‑1 (MQ=255)
cGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCAc < 1:1446754/36‑1 (MQ=255)
gTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACg < 1:6366744/36‑1 (MQ=255)
gTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACg > 1:6960801/1‑36 (MQ=255)
ttttCTGCGTAATGCTCTGCAATGCCGTTACCACGt > 1:6743663/1‑36 (MQ=255)
tttCTGCGTAATGCTCTGCAATGCCGTTACCACGtt > 1:931578/1‑36 (MQ=255)
tttCTGCGTAATGCTCTGCAATGCCGTTACCACGtt > 1:2200549/1‑36 (MQ=255)
tttCTGCGTAATGCTCTGCAATGCCGTTACCACGtt > 1:112941/1‑36 (MQ=255)
ttCTGCGTAATGCTCTGCAATGCCGTTACCACGttt < 1:3732630/36‑1 (MQ=255)
ttCTGCGTAATGCTCTGCAATGCCGTTACCACGttt < 1:3580853/36‑1 (MQ=255)
tCTGCGTAATGCTCTGCAATGCCGTTACCACGtttt < 1:664852/36‑1 (MQ=255)
cTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTc < 1:4598820/36‑1 (MQ=255)
cTGCATAATGCTCTGCAATGCCGTTACCACGTTTTc < 1:5671852/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc < 1:5743312/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc < 1:2878430/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc < 1:1445827/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc < 1:982168/36‑1 (MQ=255)
gCGTAATGCTCTGCAATGCCGTTACCACGTTTTCca < 1:3218567/36‑1 (MQ=255)
gCGTAATGCTCTGCAATGCCGTTACCACGTTTTCca < 1:2583479/36‑1 (MQ=255)
|
CATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTCCA > REL606/3485858‑3485928
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|