Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 27 [3] | [0] 25 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 24 (0.580) | 18/64 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901897‑3901966
|
gtgtttaactgtccaactttttggggtcagtacagg < 1:5879808‑M2/2‑1 (MQ=255)
gtgtttaactgtccaactttttggggtcagtacagg < 1:4794483‑M2/2‑1 (MQ=255)
gtgtttaactgtccaaatttttggggtcagtacagg > 1:799298‑M2/35‑36 (MQ=255)
tgtttaactgtccaactttttggggtcagtacaGGt > 1:1301283‑M2/34‑36 (MQ=255)
tgtttaactgtccaactttttggggtcagtacaGGt < 1:4719054‑M2/3‑1 (MQ=255)
aactgtccaactttttggggtcagtacaGGTTGccc < 1:5749452‑M2/8‑1 (MQ=255)
actgtccaactttttggggtcagtacaGGTTGCCCa < 1:2740182‑M2/9‑1 (MQ=255)
actatccaactttttggggtcagtacaGGTTGCCCa < 1:1225791‑M2/9‑1 (MQ=255)
gtccaactttttggggtcagtacaGGTTGCCCACGt > 1:1018221‑M2/25‑36 (MQ=255)
tccaactttttggggtcagtacaGGTTGCCCAGGTg < 1:3653140‑M2/13‑1 (MQ=255)
caactttttggggtcagtacaGGTTGCCCAGGTGAc < 1:291042‑M2/15‑1 (MQ=255)
aactttttggggtcagtacaGGTTGCCCAGGTGAcc > 1:4248546‑M2/21‑36 (MQ=255)
actttttggggtcagtacaGGTTGCCCAGGTGACCa < 1:3644452‑M2/17‑1 (MQ=255)
ctttggggtcagtacaGGTTGCCCAGGTGACCAGCa < 1:1341685‑M2/20‑1 (MQ=255)
tttggggtcagtacaGGTTGCCCAGGTGACCAGCAc < 1:217109‑M2/21‑1 (MQ=255)
tttggggtcagtacaGGTTGCCCAGGTGACCAGCAc < 1:5647713‑M2/21‑1 (MQ=255)
tttggggtcagtacaGGTTGCCCAGGTGACCAGCAc < 1:5813060‑M2/21‑1 (MQ=255)
ggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc < 1:3281647‑M2/24‑1 (MQ=255)
ggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc < 1:132874‑M2/24‑1 (MQ=255)
tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa < 1:4898020‑M2/28‑1 (MQ=255)
cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa < 1:3281474‑M2/29‑1 (MQ=255)
agtacaGGTTGCCCAGGCGACCAGCACGCCGCCAAg > 1:4823841‑M2/7‑36 (MQ=255)
gtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa < 1:5573964‑M2/31‑1 (MQ=255)
acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGCAc < 1:3020632‑M2/33‑1 (MQ=255)
GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg > 1:1955095‑M2/1‑36 (MQ=255)
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CTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901897‑3901966
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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