Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,733,647 | IS150 (–) +3 bp | 18.4% | coding (683‑685/1413 nt) | pykF → | pyruvate kinase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 588495 = | NA (NA) | 9 (0.180) | 9/62 | NT | 20.9% | noncoding (1/1977 nt) | IS150 | repeat region |
? | REL606 | 1733647 = | 34 (0.590) | coding (683/1413 nt) | pykF | pyruvate kinase | |||||
* | ? | REL606 | = 666130 | NA (NA) | 7 (0.130) | 7/68 | NT | 15.9% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 1733649 | 37 (0.640) | coding (685/1413 nt) | pykF | pyruvate kinase |
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAC.................................. < REL606/588531‑588495
...................................CAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCA > REL606/1733647‑1733682
CATTTCATCGTCCAACAAAATGGGTGCAGTACAACA < 1:1508495/36‑1 (MQ=255)
ACAAAATGGGTGCAGTACAACAACTTCGACGAAATC < 1:7311324/36‑1 (MQ=255)
AAAATGGGTGCAGTACAACAACTTAGACGAAATCCT > 1:4768149/1‑36 (MQ=255)
TGGGTGCAGTACAACAACTTCGACGAAATCCTCGAA < 1:3901353/36‑1 (MQ=1)
TGGGTGCAGTACAACAACTTCGACGAAATCCTCGAA > 1:4258695/1‑36 (MQ=1)
GGTGCAGTACAACAACTTCGACGAAATCCTCGAAGC > 1:4314115/1‑36 (MQ=1)
GCAGTACAACAACTTCGACGAAATCCTCGAAGCCTC > 1:3549145/1‑36 (MQ=1)
GCAGTACAACAACTTCGACGAAATCCTCGAAGCCTC < 1:5504536/36‑1 (MQ=1)
GTACAACAACTTCGACGAAATCCTCGAAGCCTCTGA > 1:5748832/1‑36 (MQ=1)
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAAC.................................. < REL606/588531‑588495
...................................CAACAACTTCGACGAAATCCTCGAAGCCTCTGACGGCA > REL606/1733647‑1733682
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|