New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1286707 =35 (0.670)6 (0.120) 3/60 NT 16.0% intergenic (+31/‑152) narI/ECB_01206 nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
?REL606 = 3571661 28 (0.460)coding (110/1470 nt) yhiP predicted transporter

ACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG  >  REL606/1286672‑1286741
                                   |                                  
tgattggatcatcgtgtataggcgcatcggtcaTcg                                    >  1:2606013‑M1/34‑36 (MQ=255)
 gattggatcatcgtgtataggcgcatcggtcaTcgg                                   >  1:6031488‑M1/33‑36 (MQ=255)
 gattggatcatcgtgtataggcgcatcggtcaTcgg                                   <  1:6413178‑M1/4‑1 (MQ=255)
 cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   >  1:4128114/1‑36 (MQ=255)
 cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   <  1:2838600/36‑1 (MQ=255)
 cTAAGCGAATTTTAGTTCACATAGACCCTGCTTcgg                                   <  1:2764021/36‑1 (MQ=255)
 agcgattcggctactacggcgtgcagggcgtactgg                                   <  1:5971273‑M1/2‑1 (MQ=255)
 agcgattcggctactacggcgtgcagggcgtactgg                                   <  1:6138851‑M1/2‑1 (MQ=255)
 agcgattcggctactacggcgtgcagggcgtactgg                                   <  1:2295332‑M1/2‑1 (MQ=255)
 agcgattcggctactacggcgtgcagggcgtactgg                                   <  1:2070640‑M1/2‑1 (MQ=255)
  tAAGCGAATTTTAGTTCACATATACCCTGCTTcggc                                  >  1:342636/1‑36 (MQ=255)
  tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  <  1:3651555/36‑1 (MQ=255)
  tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  <  1:5663851/36‑1 (MQ=255)
  tAAGCGAATTTTAGTTCACATAGACCCTGCTTcggc                                  >  1:1021550/1‑36 (MQ=255)
  gcgattcggctactgcggcgtgcagggcgtactGGc                                  >  1:2648474‑M1/34‑36 (MQ=255)
  gcgattcggctactacggcgtgcagggcgtactGGc                                  >  1:2656143‑M1/34‑36 (MQ=255)
  gcgattcggctactacggcgtgcagggcgtaatGGc                                  <  1:846079‑M1/3‑1 (MQ=255)
  attggatcatcgtgtataggcgcatcggtcaTcggc                                  <  1:6471980‑M1/5‑1 (MQ=255)
  attggatcatcgtgtataggcgcatcggtcaTcggc                                  >  1:5020251‑M1/32‑36 (MQ=255)
   ttggatcatcgtgtataggcgcatcggtcaTcggcg                                 >  1:7397349‑M1/31‑36 (MQ=255)
   ttggatcatcgtgtataggcgcaacggtcaTcggcg                                 >  1:1503097‑M1/31‑36 (MQ=255)
   cgattcggctactacggcgtgcagggcgtactGGCg                                 <  1:1268154‑M1/4‑1 (MQ=255)
   aaGCGAATTTTAGTTCACATAGACCCTGCTTcggcg                                 <  1:2363399/36‑1 (MQ=255)
    tggatcatcgtgtataggcgcatcggtcaTcggcgg                                >  1:1036909‑M1/30‑36 (MQ=255)
    tggatcatcgtgtataggcgcatcggtcaTcggcgg                                >  1:2681083‑M1/30‑36 (MQ=255)
    gattcggctactacggcgtgcagggcgtactGGCgg                                <  1:2309910‑M1/5‑1 (MQ=255)
    gattcggctactacggcgtgcagggcgtactGGCgg                                >  1:5452231‑M1/32‑36 (MQ=255)
    gattcggctactacggcgtgcagggcgtactGGCgg                                >  1:4719901‑M1/32‑36 (MQ=255)
    aGCGAATTTTAGTTCACATAGACCCTGCTTcggcgg                                <  1:505332/36‑1 (MQ=255)
    aGCGAATTTTAGTTCACATAGACCCTGCTTcggcgg                                <  1:1721029/36‑1 (MQ=255)
     gCGAATTTTAGTTCACATAGACCCTGCTTCGGCggg                               >  1:2259079/1‑36 (MQ=255)
       gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                             <  1:513641/36‑1 (MQ=255)
       gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGt                             <  1:4500607/36‑1 (MQ=255)
       atcatcgtgtataggcgcatcggtcaTCGGCGGGGt                             <  1:6465988‑M1/10‑1 (MQ=255)
        tcatcgtgtataggcgcatcggtcaTCggcgggtcg                            <  1:1486520‑M1/11‑4 (MQ=255)
        aaTTTTAGTTCACATAGACCCTGCTTCGGCGGGGtt                            <  1:6381/36‑1 (MQ=255)
         ggctactacggcgtgcagggcgtactGGCGGGTttt                           <  1:2254335‑M1/10‑1 (MQ=255)
         ggctactacggcgtgcagggcgtactGGCGGGGttt                           <  1:2927501‑M1/10‑1 (MQ=255)
         catcgtgtataggcgcatcggtcaTCggcgggggtt                           <  1:1730600‑M1/12‑4 (MQ=255)
         aTTTTAGTTCACATAGACCCTGCTTCGGCGGGGttt                           >  1:6554411/1‑36 (MQ=255)
          ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                          <  1:906469/36‑1 (MQ=255)
          ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                          <  1:1444225/36‑1 (MQ=255)
          ttttAGTTCACATAGACCCTGCTTCGGCGGGGtttt                          <  1:3335547/36‑1 (MQ=255)
          atcgtgtataggcgcatcggtcaTCGGCGGGGtttt                          <  1:6312677‑M1/13‑1 (MQ=255)
            ttAGTTCACATAGACCCTGCTTCGGCGGGGtttttt                        <  1:6459129/36‑1 (MQ=255)
            tactacggcgtgcagggcgtactGGCGGGGtttttt                        <  1:6188374‑M1/13‑1 (MQ=255)
             tAGTTCACATAGACCCTGCTTCGGCGGGGttttttt                       <  1:737095/36‑1 (MQ=255)
             gtgtataggcgcatcggtcaTCGGCGGGTttttttt                       <  1:1867240‑M1/16‑1 (MQ=255)
             actacggcgtgcagggcgtactGGCGGGGttttttt                       <  1:4072029‑M1/14‑1 (MQ=255)
              tgtataggcgcatcggtcaTCGGCGGGGTTTTTTTa                      <  1:1555632‑M1/17‑1 (MQ=255)
              ctacggcgtgcagggcgtactGGCGGGttttttttt                      <  1:2116651‑M1/15‑2 (MQ=255)
              aGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTa                      >  1:391974/1‑36 (MQ=255)
               tacggcgtgcagggcgtactGGCGGggttttttttt                     <  1:1880153‑M1/16‑3 (MQ=255)
               gtataggcgcatcggtcaTCGGCGGggtttttttta                     <  1:3361626‑M1/18‑3 (MQ=255)
               gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTAt                     <  1:2698648/36‑1 (MQ=255)
                ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTATg                    >  1:5534391/1‑36 (MQ=255)
                  cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATggg                  <  1:2524904/36‑1 (MQ=255)
                   acaTAGACCCTGCTTCGGCGGGGTTTTTTTATTGGc                 >  1:3909075/1‑36 (MQ=255)
                   acaTAAACCCTGCTTCGGCGGGGTTTTTTTATGGGc                 <  1:4179417/36‑1 (MQ=255)
                    caTAGACCCTGCTTCGGCGGGGTTTTTTTATTGGCa                >  1:1114353/1‑36 (MQ=255)
                      tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACg              <  1:6117866/36‑1 (MQ=255)
                        gACCCTGCTTCGGCGGGGTTTTTTTATTTGAACGGt            >  1:3450966/1‑36 (MQ=18)
                        gACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGt            <  1:5074226/36‑1 (MQ=255)
                         aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTg           <  1:2838258/36‑1 (MQ=255)
                           ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCg         <  1:69169/36‑1 (MQ=255)
                               cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGt     <  1:4651226/36‑1 (MQ=255)
                                ttCGGCGGGGTTTTTTTATTGGCACGGTGCGGGGTg    >  1:3940385/1‑36 (MQ=255)
                                 tCGGCGGGGTTTTTTTATTTGCACGGTGCGGGGTGa   >  1:4882404/1‑36 (MQ=37)
                                  CGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAg  >  1:7087354‑M1/1‑36 (MQ=255)
                                   |                                  
ACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAG  >  REL606/1286672‑1286741

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG