Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,524,522 IS186 (+) +6 bp 22.4% coding (494‑499/549 nt) fimA → major type 1 subunit fimbrin (pilin)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 15386 =NA (NA)6 (0.110) 6/64 NT 17.6% noncoding (1/1343 nt) IS186 repeat region
?REL606 = 4524527 28 (0.490)coding (499/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? REL606 = 16728NA (NA)9 (0.170) 8/64 NT 27.3% noncoding (1343/1343 nt) IS186 repeat region
?REL606 4524522 = 24 (0.420)coding (494/549 nt) fimA major type 1 subunit fimbrin (pilin)

AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG...................................  <  REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC  <  REL606/4524527‑4524493
                                                                         
    GTAATACCACAACCCTTAAGTTAGCGCTTATGGGTT                                   <  1:6830039/36‑1 (MQ=255)
      AATACCACAACCCTTAAGTTAGCGCTTATGGGTTGC                                 <  1:1569491/36‑1 (MQ=255)
                CCCTTAAGTTAGCGCTTATGGGTTGCGGCCCCGGTT                       <  1:696160/36‑1 (MQ=1)
                     AAGTGAGCGCTTATGGGTTGCGGCCCCGGTTGCAAA                  <  1:2686897/36‑1 (MQ=0)
                       GTTAGCGCTTATGGGTTGGGGCCCCGGTTGCAAAAT                <  1:144910/36‑1 (MQ=0)
                        TTAGCGCTTATGGGTTGCGGCGCCGGTTGCAAAATA               >  1:4254583/1‑36 (MQ=0)
                                                                         
AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGG...................................  <  REL606/15423‑15386
...................................GGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAAC  <  REL606/4524527‑4524493

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG