Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,856,083 | G→T | 29.7% | intergenic (+114/+153) | yeaP → / ← yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,856,083 | 0 | G→T | 29.7% | 4.2 ‑0.5 ‑0.0 | 20 | intergenic (+114/+153) | yeaP/yeaQ | predicted diguanylate cyclase/conserved inner membrane protein |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (9/5): total (14/6) | ||||||||||
Fisher's exact test strand distribution p-value = 6.13e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.58e-01 |
TCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGA > REL606/1856048‑1856118
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tCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TAtg < 1:4969433/36‑1 (MQ=255)
gTATTTTTAGCATGGTTTTTTATTGGCGGC.TAtgct < 1:3991805/36‑1 (MQ=255)
aTTTTTAGCATGGTTTTTTATTGGCGGC.TAtgctgc < 1:911565/36‑1 (MQ=255)
ttttAGCATGGTTTTTTATTGGCGGG.TATTCTTccc > 1:1722787/1‑36 (MQ=25)
gCATGGTTTTTTATTGTCGGC.TATGCTGCCCCGGGa < 1:7613440/36‑1 (MQ=255)
cATGGTTTTTTATTGGCGGC.TATTTTTCCCCggggg > 1:944223/1‑34 (MQ=21)
cATGGTTTTTTATTGAGGGC.TATTCTGCCCCGGGAg < 1:44918/36‑1 (MQ=25)
aTGGTTTTTTATTGGCGGG.TATTTTGCCCCgggggg > 1:6935900/1‑33 (MQ=16)
aTGGTTTTTTATTGGCGGC.TTTTCTTCCCCcggggg > 1:5806240/1‑33 (MQ=16)
tGGTTTTTTATTGGCGGCTTTTGTTGCCCCGGGGGc > 1:406998/1‑36 (MQ=16)
tGGTTTTTTATTGGCGGC.TATTCTTCCCCGGGGGcc > 1:192826/1‑35 (MQ=25)
tttttATTGGCGGC.TATGCTGCCCCGGGAGCATaaa < 1:2273180/36‑1 (MQ=255)
ttttATTGGCGGC.TATGCTGCCCCGGGAGCATAAAg < 1:69512/36‑1 (MQ=255)
tGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGaaa > 1:7851585/1‑36 (MQ=255)
tGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGaaa > 1:1098277/1‑36 (MQ=255)
ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa > 1:398361/1‑36 (MQ=255)
ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa < 1:6916277/36‑1 (MQ=255)
ggcggc.TATGCTGCCCCGGGAGCATAAAGATGaaaa > 1:2726620/1‑36 (MQ=255)
ggc.TATGCTGCCCCGGGAGCATAAAGATGaaaaaaa > 1:314873/1‑36 (MQ=255)
gc.TATGCTGCCCCGGGAGCATAAAGATGAAAAAaac < 1:4422011/36‑1 (MQ=255)
gc.TATGCTGCCCCGGGAGCATAAAGATGAAAAAaac > 1:6733799/1‑36 (MQ=255)
tATGCTGCCCCGGGAGCATAAAGATGAAAAAaacaa > 1:1942961/1‑36 (MQ=255)
tATGCTGCCCCGGGAGCATAAAGATGAAAAAaacaa > 1:1494457/1‑36 (MQ=255)
gctgcCCCGGGAGCATAAAGATGAAAAAAACAACGa > 1:2487621/1‑36 (MQ=255)
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TCGTATTTTTAGCATGGTTTTTTATTGGCGGC.TATGCTGCCCCGGGAGCATAAAGATGAAAAAAACAACGA > REL606/1856048‑1856118
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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