Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,819,998 | 0 | G→T | 9.6% | 1.7 ‑8.7 ‑0.0 | 73 | 105 | xni | exonuclease IX |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (8/0): ref base (19/46): total (27/46) | ||||||||||
Fisher's exact test strand distribution p-value = 1.65e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.87e-01 |
GATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCAT > REL606/2819965‑2820033
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gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt < 1:3108818/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt < 1:1206936/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt < 1:248703/36‑1 (MQ=255)
gATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCt < 1:5726012/36‑1 (MQ=255)
aTCTTTAAGGGGGTTATCGTGGCTGTTTATTTTCtt > 1:7636629/1‑36 (MQ=37)
aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTTCtt > 1:4157030/1‑36 (MQ=255)
aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt < 1:5645043/36‑1 (MQ=255)
aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt < 1:445467/36‑1 (MQ=255)
aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCtt < 1:145333/36‑1 (MQ=255)
tCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTa < 1:6980673/36‑1 (MQ=255)
tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt < 1:1117049/36‑1 (MQ=255)
tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt < 1:1432929/36‑1 (MQ=255)
tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt < 1:5651194/36‑1 (MQ=255)
tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt < 1:1619345/36‑1 (MQ=255)
tttAAGGGGGTTATCGTGGCTGTTCATTTGCTTAtt < 1:6375876/36‑1 (MQ=255)
ttAAGGGGGTTATCGTGGCTGTTCTTTTGCTTTttt > 1:4271874/1‑35 (MQ=37)
ttAAGGGGGTTATCGTGGCTGTTCATTTTCTTTttt > 1:2195671/1‑35 (MQ=37)
ttAAGGGGGTTATCGTGGCTGTTCATTTTCTTTttt > 1:4535836/1‑35 (MQ=37)
tAAGGGGGTTATCGTGGCTGTTCATTTTGTTAtttt > 1:6502798/1‑34 (MQ=37)
tAAGGGGGTTATCGTGGCTGTTCATTTTCTTTtttt > 1:1548002/1‑34 (MQ=25)
tAAGGGGGTTATCGTGGCTGTTCATTTGCTTAttat < 1:6550171/36‑3 (MQ=255)
tAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGt < 1:7866573/36‑1 (MQ=255)
aGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCg < 1:2595375/36‑1 (MQ=255)
gggggTTATCGTGGCTGTTCATTTGCTTATTGTCGa < 1:6833828/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:4329975/36‑1 (MQ=255)
ggggTTATCGTGGCTGTTCATTTGCTTATTGTCGAt < 1:1896023/36‑1 (MQ=255)
gggTTATCGTGGCTGTTTGTTTTCTTATTTTCGAtt > 1:3288516/1‑35 (MQ=19)
gggTTATCGTGGCTGTTCATTTGCTTATTGTCGATg < 1:3876413/36‑1 (MQ=255)
gggTTATCGTGGCTGTTCATTTGCTTATTGTCGATg < 1:6995129/36‑1 (MQ=255)
ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGc < 1:4104480/36‑1 (MQ=255)
ttATCGTGGCTGTTCATTTTCTTATTTTCTATTCAc > 1:7522419/1‑36 (MQ=19)
ttATCGTGGCTGTTCATTTGCTTATTTTCGATGCAc > 1:4615800/1‑36 (MQ=255)
ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc < 1:3850497/36‑1 (MQ=255)
ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc < 1:6085579/36‑1 (MQ=255)
ttATCGTGGCTGTTCATTTGCTTATTGTCGATGCAc < 1:7667819/36‑1 (MQ=255)
aTCGTGGCTGTTCATTTGCTTATTTTCGATGCACTg > 1:5639821/1‑36 (MQ=255)
aTCGTGGCTGTTCATTTGCTTATTGTCGATGCACTg > 1:7718682/1‑36 (MQ=255)
aTCGTGGCTGTTCATTTGCTTATTGTCGATGCACTg < 1:7766316/36‑1 (MQ=255)
cGTGGCTGTTCATTTGCTTATTGTCGATGCACTGaa < 1:3460508/36‑1 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCTATGCACTGAATc > 1:2644386/1‑36 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc > 1:6036280/1‑36 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc > 1:7544834/1‑36 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc > 1:1097703/1‑36 (MQ=255)
tGGCTGTTCATTTGCTTATTGTCGATGCACTGAATc < 1:4768689/36‑1 (MQ=255)
ggCTGTTCATTTGCTTATTGTCGATGCACTGAATCt < 1:5808266/36‑1 (MQ=255)
ggCTGTTCATTTGCTTATTGTCGATGCACTGAATCt > 1:1776584/1‑36 (MQ=255)
gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt > 1:5089160/1‑36 (MQ=255)
gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt > 1:7349813/1‑36 (MQ=255)
gCTGTTCATTTGCTTATTGTCGATGCACTGAATCtt < 1:3260885/36‑1 (MQ=255)
cTGTTCATTTGCTTATTGTCGATGCACTGAATCTTa < 1:2902515/36‑1 (MQ=255)
cTGTTCATTTGCTTATTGTCGATGCACTGAATCTTa > 1:3398432/1‑36 (MQ=255)
tgctCATTTGCTTATTGTCGATGCACTGAATCTTAt > 1:7901360/4‑36 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt < 1:219258/36‑1 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt < 1:3013870/36‑1 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt > 1:1444594/1‑36 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt < 1:7745500/36‑1 (MQ=255)
gTTCATTTGCTTATTGTCGATGCACTGAATCTTAtt < 1:5403161/36‑1 (MQ=255)
ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc < 1:3762642/36‑1 (MQ=255)
ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc < 1:7600472/36‑1 (MQ=255)
ttCATTTGCTTATTGTCGATGCACTGAATCTTATtc < 1:7893277/36‑1 (MQ=255)
tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg < 1:3483512/36‑1 (MQ=255)
tCATTTGCTTATTGTCGATGCACTGAATCTTATtcg > 1:1113248/1‑36 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc < 1:2318558/36‑1 (MQ=255)
aTTTGCTTATTGTCGATGCACTGAATCTTATtcgtc < 1:4942979/36‑1 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg < 1:6686389/36‑1 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg < 1:1796957/36‑1 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg < 1:656499/36‑1 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg > 1:6268306/1‑36 (MQ=255)
tttGCTTATTGTCGATGCACTGAATCTTATtcgtcg > 1:1321529/1‑36 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc > 1:2115139/1‑36 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc < 1:3356197/36‑1 (MQ=255)
ttGCTTATTGTCGATGCACTGAATCTTATTCGTCGc < 1:5253203/36‑1 (MQ=255)
tGCTTATTGTCGATGCACTGAATCTTATTCGTCGCa > 1:5115917/1‑36 (MQ=255)
gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt > 1:4364221/1‑36 (MQ=255)
gCTTATTGTCGATGCACTGAATCTTATTCGTCGCAt < 1:4488820/36‑1 (MQ=255)
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GATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCAT > REL606/2819965‑2820033
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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