New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1525665 =73 (1.250)11 (0.190) 11/66 NT 13.8% coding (178/654 nt) fdnI formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible
?REL606 = 1536792 65 (1.050)coding (223/582 nt) ddpX D‑ala‑D‑ala dipeptidase, Zn‑dependent

CGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTT  >  REL606/1536757‑1536827
                                   |                                   
cGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGc                                     <  1:6924533/36‑1 (MQ=255)
 gggTCTGGGCAGGCTTGCCCCAACATCGCCTGTGCt                                    <  1:5726058‑M2/36‑2 (MQ=255)
 aggTCTGGGCAGCCTTGCCACAGCATCGCCTGTGCt                                    <  1:7398017/35‑1 (MQ=37)
  ggTCTGGGCAGGCTTGCCACAACATCGCCTGTGCtt                                   >  1:8254122‑M2/1‑34 (MQ=255)
  ggTCTGGGCAGGCTTGCCACAACATCGCCTGTGCtt                                   >  1:4342307‑M2/1‑34 (MQ=255)
  gatCTGGGCGGGCTTGCCACAACATCGCCTGTGCtt                                   <  1:6592226/34‑1 (MQ=37)
   gTCTGGGCAGGCTTGCCACAACATCGCCTGTGCttg                                  <  1:3698716/36‑1 (MQ=255)
   gTCTGGGCAGGCTTGCCACAACATCGCCTGTGCttg                                  <  1:3851337/36‑1 (MQ=255)
   gTCTGGGCAGGCTTGCCACAACATCGCCTGTGCttg                                  <  1:2167927/36‑1 (MQ=255)
    tCTGGTCAGGCTTGCCACAACATCGCCTGTGCttgt                                 <  1:2954669/36‑1 (MQ=255)
    tCTGGGCAGGCTTGCCACAACATCGCCTTTGGtttt                                 >  1:2296734/1‑34 (MQ=37)
    tCTGGGCAGGCTTGCCACAACATCGACTGTGCtttt                                 >  1:7456454/1‑34 (MQ=38)
    tCTGGCCAGGCTTTCCACAACATCGCCTGTGCttcg                                 <  1:2250657/36‑3 (MQ=37)
     cTGGGCAGGCTTGCCCCAACATCGCCTGTGCttgtt                                >  1:4823247/1‑36 (MQ=255)
     cTGGGCAGGCTTGCCACAACATCGCCTGTGCttgtt                                >  1:5684300/1‑36 (MQ=255)
     cTGGGCAGGCTTGCCACAACATCGCCTGTGCttgtt                                <  1:7992880/36‑1 (MQ=255)
     cTGGGCAGGCTTGCCACAACATCGCCTGTGCttgtt                                <  1:2290990/36‑1 (MQ=255)
     cTGGGCAGGCTTGCCACAACATCGCCTGTGCttgtt                                <  1:2095139/36‑1 (MQ=255)
      tGGGCAGGCTTGCCACAACATCGCCTGTGCttgttg                               <  1:566103/36‑1 (MQ=255)
      tGGGCAGGCTTGCCACAACATCGCCTGTGCttgttg                               <  1:5421442/36‑1 (MQ=255)
      tGGGCAGGCTTGCCACAACATCGCCTGTGCttgttg                               >  1:3237394/1‑36 (MQ=255)
      tGGGCAGGCTTGCCACAACATCGCCTGTGCttgttg                               <  1:7130054/36‑1 (MQ=255)
      tGGGCAGGCTTGCCACAACATCGCCTGTGCttgttg                               <  1:7289606/36‑1 (MQ=255)
       gggCAGGCTTGCCCCAACATCGCCTGTGCTtgttgt                              <  1:2374967/36‑1 (MQ=255)
       gggCAGGCTTGCCACAACATCGCCTGTGCTtgttgt                              <  1:3890845/36‑1 (MQ=255)
       gggCAGGCTTGCCACAACATCGCCTGTGCTtgttgt                              <  1:5946635/36‑1 (MQ=255)
       gggCAGGCTTGCCACAACATCGCCTGTGCTtgttgt                              <  1:7249712/36‑1 (MQ=255)
        ggCAGGCTTTCCACAACATCGCCTGTGCTTGTtgtg                             <  1:3421746/36‑1 (MQ=255)
           aGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGc                          <  1:697614/36‑1 (MQ=255)
            ggCTTGCCACAACATCGCCTGTGCTTGTTTTGGGCg                         >  1:8181580/1‑36 (MQ=255)
             gCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGa                        <  1:5320585/36‑1 (MQ=255)
             gCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGa                        <  1:5924724/36‑1 (MQ=255)
              cTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGAt                       >  1:6698640/1‑36 (MQ=255)
              cTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGAt                       <  1:6830632/36‑1 (MQ=255)
              cTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGAt                       >  1:2161394/1‑36 (MQ=255)
               ttGCCACAACATCGCCTGTGCTTGTTGTGGGCGATa                      >  1:3991332/1‑36 (MQ=255)
                tGCCACAACATCGCGTGTGCTTGTTGTGGGCGATAc                     <  1:8317992/36‑1 (MQ=255)
                tGCCACAACATCGCCTGTGCTTGTTGTGGGCGATAc                     >  1:6259404/1‑36 (MQ=255)
                 gCCACAACATCGCCTGTGCttcggcattgcgatttt                    <  1:7519344‑M2/36‑18 (MQ=255)
                 gCCACAACATCGCCTGTGCTTGTTGTGGGCGATACg                    >  1:4955433/1‑36 (MQ=255)
                 gCCACAACATCGCCTGTGCTTGTTGTGGGCGATACg                    >  1:1100927/1‑36 (MQ=255)
                  ccACAACATCGCCTGTGCttcggcattgcgattttc                   >  1:3482395‑M2/1‑18 (MQ=255)
                  ccACAACATCGCCTGTGCTTGTTGTGGGCGATACGc                   <  1:2337548/36‑1 (MQ=255)
                    acaacaTCGCCTGTGCTTTTTGTGGGCGATACgaca                 >  1:3406374/1‑33 (MQ=37)
                    acaacaTCGCCTGTGCTTGTTGTGGGCGATACGCAt                 >  1:1918043/1‑36 (MQ=255)
                    acaacaTCGCCTGTGCTTGTTGTGGGCGATACGCAt                 >  1:3371660/1‑36 (MQ=255)
                    acaacaTCGCCTGTGCTTGTTGTGGGCGATACGCAt                 >  1:3552015/1‑36 (MQ=255)
                    acaacaTCGCCTGTGATTGTTTTGGGCGATGCGTAt                 >  1:3551610/1‑36 (MQ=19)
                     caacaTCGCCTGTGCttcggcattgcgattttcgtc                <  1:5559957‑M2/36‑22 (MQ=255)
                     caacaTCGCCTGTGCTTGTTGTGGGCGATACGCATc                >  1:973066/1‑36 (MQ=255)
                     caacaTCGCCTGTGCTTGTTGTGGGCGATACGCATc                <  1:2377305/36‑1 (MQ=255)
                     caacaTCGCCTGTGCTTGTTGTGGGCGATACGCATc                <  1:606984/36‑1 (MQ=255)
                      aacaTCGCCTGTGCTTGTTGTGTGCGATACGCATCg               >  1:2609721/1‑36 (MQ=255)
                       acaTCGCCTGTGCttcggcattgcgattttcgtcgc              >  1:4133823‑M2/1‑13 (MQ=255)
                       acaTCGCCTGTGCttcggcattgcgattttcgtcgc              <  1:7340171‑M2/36‑24 (MQ=255)
                       acaTCGCCTGTGCTTGTTGTGGGCGATACGCATCGt              >  1:1572683/1‑36 (MQ=255)
                       acaTCGCCTGTGCTTGTTGTGGGCGATACGCATCGt              >  1:6557788/1‑36 (MQ=255)
                        caTCGCCTGTGCTTGTTGTGGGCGATACGCATCGTa             >  1:3354268/1‑36 (MQ=255)
                         aTCGCCTGTGCTTGTTGTGGGGGATACGCATCGTaa            <  1:4873127/36‑1 (MQ=255)
                         aTCGCCTGTGCTTGTTGTGGGCGATACGCATCGTaa            >  1:5447008/1‑36 (MQ=255)
                         aTCGCCTGTGATTGTTGTGGGCGATAAGCATCGTaa            >  1:4489297/1‑36 (MQ=37)
                           cGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAAt          <  1:5616124/36‑1 (MQ=255)
                           cGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAAt          >  1:5997974/1‑36 (MQ=255)
                           cGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAAt          >  1:7207554/1‑36 (MQ=255)
                            gCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATc         >  1:3452155/1‑36 (MQ=255)
                            gCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATc         <  1:6065484/36‑1 (MQ=255)
                            gCCTGTGCTTGTTGTGGGCGATACACATCGTAAATc         <  1:4487107/36‑1 (MQ=255)
                             ccTGTGCTTGTTGTGGGCGATACGCATCGTAAATCa        >  1:4561330/1‑36 (MQ=255)
                             ccTGTGCTTGTTGTGGGCGATACGCATCGTAAATCa        >  1:3187889/1‑36 (MQ=255)
                              cTGTGCttcggcattgcgattttcgtcgcactgatg       >  1:5711922‑M2/1‑6 (MQ=255)
                              cTGTGCTTGTTGTGGGCGATACGCATCGTAAATCAc       >  1:1144873/1‑36 (MQ=255)
                               tgtgCttcggcattgcgattttcgtcgcactgatgt      >  1:2346645‑M2/1‑5 (MQ=255)
                               tgtgCTTGTTGTGGGCGATACGCATCGTAAATCAcc      <  1:8024757/36‑1 (MQ=255)
                                gtgCttcggcattgcgattttcgtcgcactgatgtt     >  1:165299‑M2/1‑4 (MQ=255)
                                gtgCTTGTTGTGGGCGATACGCATCGTAAATCACCa     <  1:3004647/36‑1 (MQ=255)
                                gtgCTTGTTGTGGGCGATACGCATCGTAAATCACCa     <  1:4888075/36‑1 (MQ=255)
                                 tgCttcggcattgcgattttcgtcgcactgatgttt    >  1:2530875‑M2/1‑3 (MQ=255)
                                  gCttcggcattgcgattttcgtcgcactgatgttta   >  1:470719‑M2/1‑2 (MQ=255)
                                  gCTTGTTGTGGGCGATACGCATCGTAAATCACCAGt   >  1:3732125/1‑36 (MQ=255)
                                   cttcggcattgcgattttcgtcgcactgatgtttat  <  1:1620907‑M2/36‑36 (MQ=255)
                                   cTTGTTGTGGGCGATACGCATCGTAAATCACCAGtt  <  1:2615218/36‑1 (MQ=255)
                                   cTTGTTGTGGGCGATACGCATCGTAAATCACCAGtt  >  1:6880815/1‑36 (MQ=255)
                                   cTTGTTGTGGGCGATACGCATCGTAAATCACCAGtt  <  1:6240782/36‑1 (MQ=255)
                                   cTTGTTGTGGGCGATACGCATCGTAAATCACCAGtt  <  1:6045915/36‑1 (MQ=255)
                                   |                                   
CGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTT  >  REL606/1536757‑1536827

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG