New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 161952944 (0.830)7 (0.130) 4/60 NT 15.6% intergenic (‑138/+79) rem/hokD predicted protein/small toxic polypeptide
?REL606 = 3069838 32 (0.520)coding (621/1500 nt) pitB phosphate transporter

GCAGCGGAAACAATCAGCGCAATACGCGTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTGCGAT  >  REL606/3069803‑3069872
                                   |                                   
gCAGCGGAAACAATCAGCGCAATACGCGTCCAGAAt                                     <  1:4763872/36‑1 (MQ=255)
gCAGCGGAAACAATCAGCGCAATACGCGTCCAGAAt                                     >  1:3395911/1‑36 (MQ=255)
gCAGCGGAAACAATCAGCGCAATACGCGTCCAGAAt                                     >  1:6067693/1‑36 (MQ=255)
gCAGCGGAAACAATCAGCGCAATACGCGTCCAGAAt                                     <  1:19456/36‑1 (MQ=255)
 cAGCGGAAACAATCAGCGCCATACCCGTCCAGAATg                                    >  1:7955426/1‑36 (MQ=18)
 cAGCGGAAACAATCAGCGCAATACGCGTCCAGAATg                                    <  1:6789154‑M2/36‑2 (MQ=255)
 cAGCGGAAACAATCAGCGCAATACGCGTCCAGAATg                                    <  1:6704288‑M2/36‑2 (MQ=255)
  aGCGGAAACAATCAGCGCAATACGCGTCCAGAATgg                                   <  1:586983‑M2/36‑3 (MQ=255)
  aGCGGAAACAATCAGCGCAATACGCGTCCAGAATgg                                   >  1:2853257‑M2/1‑34 (MQ=255)
  aGCGGAAACAATCAGCGCAATACGCGTCCAGAATgg                                   <  1:1660667‑M2/36‑3 (MQ=255)
  aGCGGAAACAATCAGCGCAATACGCGTCCAGAATgg                                   >  1:7807635‑M2/1‑34 (MQ=255)
  aGCGGAAACAATCAGCGCAATACGAGTCCAGAATgg                                   <  1:6647223‑M2/36‑3 (MQ=255)
  aGCGGAAAAAAGCACCGCAATACGCGTCCAGAATgg                                   >  1:1080512/1‑36 (MQ=17)
   gCGGAAACAATCAGCGCAATACGCGTCCAGAATggc                                  <  1:6659336‑M2/36‑4 (MQ=255)
   gCGGAAACAATCAGCGCAATACGCGTCCAGAATggc                                  <  1:7697021‑M2/36‑4 (MQ=255)
   gCGGAAACAATCAGCGCAATACGCGTCCAGAATggc                                  <  1:7350568‑M2/36‑4 (MQ=255)
   gCGGAAACAATCAGCGCAATACGCGTCCAGAATggc                                  <  1:4226982‑M2/36‑4 (MQ=255)
   gCGGAAACAATCAGCGCAATACGCGTCCAGAATgga                                  <  1:3664558‑M2/36‑4 (MQ=255)
     ggAAACAATCAGCGCAATACGCGTCCAGAATggcgg                                <  1:8091771‑M2/36‑6 (MQ=255)
      gAAACAATCAGCGCAATACGCGTCCAGAATGGC.GGt                              <  1:2011150/36‑1 (MQ=255)
       aaaCAATCAGCGCAATACGCGTCCAGAATggcgggt                              <  1:1158211‑M2/36‑8 (MQ=255)
       aaaCAATCAGCGCAATACGCGTCCAGAATggcgggt                              <  1:3890729‑M2/36‑8 (MQ=255)
       aaaCAATCAGCGCAATACGCGTCCAGAATggcgggg                              <  1:1830343‑M2/36‑8 (MQ=255)
       aaaCAATCAGCGCAATACGCGTCCAGAATGGC.GGtt                             <  1:694804/36‑1 (MQ=255)
       aaaCAATCAGCGCAATACGCGTCCAGAATGGC.GGtt                             <  1:5777351/36‑1 (MQ=255)
        aaCAATCAGCGCAATACGCGTCCAGAATGGC.GGttt                            <  1:3721186/36‑1 (MQ=255)
         aCAGTCAGCGCAATACGCGTCCAGAATGGC.GGTTTa                           <  1:6598889/36‑1 (MQ=255)
          cAATCAGCGCAATACGCGTCCAGAATggcgggtttt                           <  1:5574862‑M2/36‑11 (MQ=255)
          cAATCAGCGCAATACGCGTCCAGAATGGC.GGTTTAc                          <  1:8353025/36‑1 (MQ=255)
            aTCAGCGCGATACGCGTCCAGAATggcgggtttttt                         <  1:3039577‑M2/36‑13 (MQ=255)
            aTCAGCGCAATACGCGTCCAGAATGGC.GGTTTACGt                        <  1:4073826/36‑1 (MQ=255)
              gaGCGCAGTACGCGTCCAGAATTGC.GGTTTACGttt                      <  1:2901188/35‑1 (MQ=25)
              cAGCGCAATACGCGTCCAGAATGGC.GGTTTACGttt                      <  1:4664024/36‑1 (MQ=255)
              cAGCGCAATACGCGTCCAGAATGGC.GGCTTTGGttt                      >  1:2830678/1‑36 (MQ=11)
              cAGCGCAATACGCGTCCAGAATCGC.GGTTTACGttt                      <  1:3075546/36‑1 (MQ=255)
                gcgcAATACGCGTCCAGAATggcgggtttctgtttt                     <  1:7699295‑M2/36‑17 (MQ=255)
                gcgcAATACGCGTCCAGAATGGC.GGTTTACGTTTGc                    <  1:4056249/36‑1 (MQ=255)
                 cgcAATACGCGTCCAGAATggcgggttttttttttt                    <  1:1119054‑M2/36‑18 (MQ=255)
                 cgcAATACGCGTCCAGAATGGC.GGGTTTTGtttttt                   >  1:5571984/1‑33 (MQ=2)
                   cAATACGCGTCCAGAATGGC.GGTTTACGTTTGCCtt                 <  1:8151684/36‑1 (MQ=255)
                     aTACGCGTCCAGAATGGC.GGGTTTCGTTTTTCtttt               >  1:758081/1‑36 (MQ=9)
                      tACGCGTCCAGAATGGC.GGTTTACGTTTGCCttttt              <  1:4497703/36‑1 (MQ=255)
                        cgcgTCCAGAATGGCGGGTTTTGGTTTTCTtttttt             >  1:1299029/1‑36 (MQ=2)
                          cgTCCAGAATGGC.GGTTTTTTTTTTTCTTTTTTTtt          >  1:392248/1‑36 (MQ=0)
                          cgTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCtt          <  1:7746893/36‑1 (MQ=255)
                          cgTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCtt          <  1:370036/36‑1 (MQ=255)
                          cgTCCAGAATGGC.GGGTTTTGTTTTTGTTTTTTTtt          >  1:2503956/1‑36 (MQ=2)
                           gTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCttt         <  1:675289/36‑1 (MQ=255)
                           gTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCttt         <  1:415909/36‑1 (MQ=255)
                             ccAGAATGGC.GGTTTACGTTTGCCTTTTTTCttttt       <  1:1490614/36‑1 (MQ=255)
                              cAGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTg      <  1:3275140/36‑1 (MQ=255)
                              cAGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTg      <  1:2496850/36‑1 (MQ=255)
                              cAGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTg      <  1:1121222/36‑1 (MQ=255)
                               aGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTGc     <  1:1355506/36‑1 (MQ=255)
                                  aTGGC.GGTTTACGTTTGCCTTTTTTCTTTTTGCTAt  <  1:2180873/36‑1 (MQ=255)
                                  aTGGC.GGTTTACGTTTGCCTTTTTTCTTTTTGCGAt  <  1:982607/36‑1 (MQ=255)
                                   |                                   
GCAGCGGAAACAATCAGCGCAATACGCGTCCAGAATGGC.GGTTTACGTTTGCCTTTTTTCTTTTTGCGAT  >  REL606/3069803‑3069872

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG