Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 976,493 | C→T | 11.9% | S197F (TCT→TTT) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 976,493 | 0 | C→T | 11.9% | 2.1 ‑1.9 ‑0.0 | 42 | 590 | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (22/13): total (28/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.52e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.35e-01 |
AGATACGGTGATTCGTATTAAAGGCGATCT.GGTTTCTAAACCTTATATCGACATCACACTCAATCTGAT > REL606/976458‑976526
|
aGATACGGTGATTCGTATTAAAGGCGATCT.GGTTTc > 1:4423515/1‑36 (MQ=255)
gATACGGTGATTCGTATTAAAGGCGATCT.GGTTTCt > 1:5697228/1‑36 (MQ=255)
aTACGGCGATTCGTATTAAAGGCGATCT.GGTTTCTa > 1:2697156/1‑36 (MQ=255)
aCGGTGATTCGTATTAAAGGCGATCT.GGTTTCTaaa < 1:1344915/36‑1 (MQ=255)
ggTGATTCGTATTAAAGGCGATTTGGGTTTTTaaat > 1:121593/1‑35 (MQ=16)
ggTGATTCGTATTAAAGGCGATCT.TGTTTCTAAAcc > 1:4949228/1‑36 (MQ=255)
ggTGATTCGTATTAAAGGCGATCT.GGTTTCTAAAcc > 1:165185/1‑36 (MQ=255)
ggTGATTCGTATTAAAGGCGATCT.GGTTTCTAAAcc > 1:569765/1‑36 (MQ=255)
gTGATTCGTATTAAAGGCGATCT.GGTTTCTAAACCt > 1:3668661/1‑36 (MQ=255)
tGATTCGTATTAAAGGCGATCT.GGTTTTTAAACCtt > 1:2521342/1‑36 (MQ=255)
gATTCGTATTAAAGGCGATTT.GTTTTCTAAACCTta < 1:1295666/36‑1 (MQ=37)
aTTCGTATTAAAGGCGATCT.GGTTTTTAAACCTtat > 1:3508699/1‑36 (MQ=255)
ttCGTATTAAAGGCGATCT.GGTTTTTAAACCTtata > 1:4675299/1‑36 (MQ=255)
ttCGTATTAAAGGCGATCG.GGTTTTTAAACCTtata > 1:2666004/1‑36 (MQ=38)
tCGTATTAAAGGCGATCT.GGTTTCTAAACCTTatat > 1:1795862/1‑36 (MQ=255)
cGTATTAAAGGCGATCT.GGTTTCTAACCCTTATATc < 1:5399746/36‑1 (MQ=255)
cGTATTAAAGGCGATCT.GGTTTCTAAACCTTATATc > 1:5837720/1‑36 (MQ=255)
cGTATTAAAGGCGATCT.GGTTTCTAAACCTTATATc > 1:2608094/1‑36 (MQ=255)
cGTATTAAAGGCGATCT.GGTTTCTAAACCTTATATc > 1:1541802/1‑36 (MQ=255)
gTATTAAAGGCGATCT.GGTTTCTAAACCTTATATCg > 1:892943/1‑36 (MQ=255)
gTATTAAAGGCGATCT.GGTTTCTAAACCTTATATCg > 1:2108669/1‑36 (MQ=255)
aTTAAAGGCGATCT.GGTTTCTAAACCTTATATCGAc < 1:1313065/36‑1 (MQ=255)
aTTAAAGGCGATCT.GGGTTCTAAACCTTATATCGAc > 1:3787909/1‑36 (MQ=255)
ttAAAGGCGATCT.GGTTTTTAAACCTTATATCGACa > 1:4664333/1‑36 (MQ=255)
ttAAAGGCGATCT.GGTTTCTAAACCTTATATCGACa < 1:3947202/36‑1 (MQ=255)
tAAAGGCGATCT.GGTTTCTAAACCTTATATCGACAt > 1:3523843/1‑36 (MQ=255)
aaaGGTGATCT.GGTTTCTAAACCTTATATCGACATc < 1:5668228/36‑1 (MQ=255)
aaaGGCGATCT.GGTTTCTAAACCTTATATCGACATc > 1:225476/1‑36 (MQ=255)
aaGGCGATCT.GGTTTCTAAACCTTATATCGACATca < 1:4126055/36‑1 (MQ=255)
aGGCGATCT.GGTTTCTAAACCTTATATCGCCATcac < 1:5662726/36‑1 (MQ=255)
aGGCGATCT.GGTTTCTAAACCTTATATCGACATcac > 1:2315588/1‑36 (MQ=255)
aGGCGATCC.GGTTTCTAAACCTTATATCGACATcac > 1:4239461/1‑36 (MQ=255)
ggCGGTCN.NNTTTGTTAGCCTGATATCGACATcaca < 1:2028189/36‑1 (MQ=9)
gCGATCT.GGTTTCTAAACCTTATATCGACATCacac > 1:3795334/1‑36 (MQ=255)
gATCT.GGTTTCTAAACCTTATATCGACATCACACTc < 1:5445613/36‑1 (MQ=255)
gATCT.GGTTTCTAAACCTTATATCGACATCACACTc > 1:291881/1‑36 (MQ=255)
aTCT.GGTTTCTAAACCTTATATCGACATCACACTCa < 1:5144641/36‑1 (MQ=255)
cT.GGTTTCTAAACCTTATATCGACATCACACTCAAt < 1:2563348/36‑1 (MQ=255)
t.GGTTTCTAAACCTTATATCGACATCACACTCAATc < 1:4751803/36‑1 (MQ=255)
t.GGTTTCTAAACCTTATATCGACATCACACTCAATc > 1:563709/1‑36 (MQ=255)
ggTTTCTAAACCTTATATCGACATCACACTCAATCt < 1:5610882/36‑1 (MQ=255)
tttCTAAACCTTATATCGACATCACACTCAATCtga > 1:3765355/1‑36 (MQ=255)
ttCTAAACCTTATATCGAAATCACACTCAATCtgat > 1:2470848/1‑36 (MQ=255)
|
AGATACGGTGATTCGTATTAAAGGCGATCT.GGTTTCTAAACCTTATATCGACATCACACTCAATCTGAT > REL606/976458‑976526
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|