New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1109621 =29 (0.500)7 (0.120) 5/70 NT 17.9% coding (461/1359 nt) ycdT predicted diguanylate cyclase
?REL606 = 3061117 35 (0.610)coding (752/1173 nt) ECB_02854 conserved hypothetical protein

ACAAAAAACAAAC...................................  <  REL606/1109633‑1109621
.............CCGCCAATCGAGGCCAGACTTTTACTGAAGGTGCC  <  REL606/3061117‑3061083
                                                
ACAAAAAACAAACCCGCCAATCGAGGCCAGACTTTT              <  1:5650929/36‑1 (MQ=255)
        aAAAGCCGCCAATCGAGGCCAGACTTTTACTGAAGG      <  1:4756890/35‑1 (MQ=255)
         AAACCCGCCAATCCAGGCCAGACTTTTACTGAAGGT     <  1:1683437/36‑1 (MQ=255)
          AACCCGCCAATCGAGGCCAGACTTTTACTGAAGGTG    <  1:4906535/36‑1 (MQ=255)
           ACCCGCCAATCGAGGCCAGACTTTTACTGAAGGTGC   <  1:1275845/36‑1 (MQ=255)
            CCCTCCAATCGAGGCCAGACTTTTACTGAAGGTGCC  <  1:5045887/36‑1 (MQ=255)
            CCCGCCAATCGAGGCCAGACTTTTACTGAAGGTGCC  <  1:3643962/36‑1 (MQ=255)
                                                
ACAAAAAACAAAC...................................  <  REL606/1109633‑1109621
.............CCGCCAATCGAGGCCAGACTTTTACTGAAGGTGCC  <  REL606/3061117‑3061083

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 11 ≤  ATCG  < 26 ≤  ATCG  < 37 ≤  ATCG