New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1299694 =27 (0.590)11 (0.240) 5/52 NT 31.4% coding (919/1632 nt) oppA oligopeptide transporter subunit
?REL606 = 2574502 21 (0.340)intergenic (+344/+474) sseA/sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate

AAACATGTAAATTCACTTTCCTTTAAAAAACAAAAAACCGCCAAAATCAGGCGGTTTTTTGTTGCTGGT  >  REL606/2574469‑2574537
                                 |                                   
aaaCATGTAAATTCACTTTCCTTTAAAAAACAAAaa                                   <  1:7656191‑M2/36‑3 (MQ=255)
 aaCATGTAAATTCACTTTCCTTTAAAAAACAAAaaa                                  <  1:3205902‑M2/36‑4 (MQ=255)
 aaCATGTAAATTCACTTTCCTTTAAAAAACAAAaaa                                  <  1:7657773‑M2/36‑4 (MQ=255)
 aaCATGTAAATTCACTTTCCTTTAAAAAACAAAaaa                                  >  1:2573126‑M2/1‑33 (MQ=255)
  aCATGTAAATTCACTTTCCTTTAAAAAACAAAaaac                                 <  1:4406065‑M2/36‑5 (MQ=255)
    aTGTAAATTCACTTTCCTTTAAAAAACAAAaaaccg                               <  1:5464243‑M2/36‑7 (MQ=255)
     tGTAAATTCACTTTCCTTTAAAAAACAAAaaaccgc                              <  1:1279457‑M2/36‑8 (MQ=255)
      gTAAATTCACTTTCCTTTAAAAAACAAAaaaccgcc                             <  1:4479403‑M2/36‑9 (MQ=255)
       tAAATTCACTTTCCTTTAAAAAACAAAaaaccgcca                            <  1:3641118‑M2/36‑10 (MQ=255)
        aaaTTCACTTTCATTAAAAAAAAAAAAAACCGCCaa                           <  1:2056995/36‑1 (MQ=25)
          aTTCACTTTCCTTTAAAAAACAAAAAACCGCCaaaa                         >  1:1247007/1‑36 (MQ=255)
               cTTTCCTTTAAAAAACAAAAAACCGCCAAAATCAgg                    >  1:813171/1‑36 (MQ=255)
                tttCCTTTAAAAAACAAAAAACCGCCAAAATCAGGc                   >  1:715051/1‑36 (MQ=255)
                tttCCTTTAAAAAACAAAAAACCGCCAAAATCAGGc                   >  1:2059516/1‑36 (MQ=255)
                tttCCTTTAAAAAACAAAAAACCGCCAAAATCAGGc                   >  1:3844853/1‑36 (MQ=255)
                 ttCCTTTAAAAAACAAAAAACCGCCAAAATCAGGCg                  >  1:7527996/1‑36 (MQ=255)
                    aaataaaAAACAAAaaaccgccattcaacgatgtgc               >  1:4593995‑M2/4‑14 (MQ=255)
                     aaaaaaaaacaaaaaaccgccattcaacgatgtgcg              >  1:3267140‑M2/4‑13 (MQ=255)
                      aaaaaaaaaaaaaaacCGCCAAAATCAGGCGGtttt             <  1:1926217/34‑1 (MQ=25)
                        agaaaaaaaaaaacCGCC.GAATTTGGCGGtttttta          <  1:1454297/34‑2 (MQ=17)
                        aaacaacaaaaaaccgccattcaacgatgtgcgtgt           >  1:3058301‑M2/1‑10 (MQ=255)
                        aaaaaacaaaaaaccgccattcaacgatgtgcgtgt           >  1:6298793‑M2/1‑10 (MQ=255)
                        aaaaaaaaaaaaaccgcctgtcacaaagtaaattca           >  1:3252829‑M2/1‑11 (MQ=255)
                        aaaaaaaaaaaaacCGCCAAATTC.GGCGGtttttta          <  1:4168538/36‑2 (MQ=17)
                        aaaaaaaaaaaaacCGCCAAAATCAGGCGGtttttt           <  1:915082/36‑1 (MQ=255)
                         aaaaacaaaaaaccgccattcaacgatgtgcgtgtg          >  1:8372387‑M2/1‑9 (MQ=255)
                          aaaaaaaaaaaccgcctgtcacaaagtaaattcaga         >  1:1455998‑M2/1‑9 (MQ=255)
                          aaaaaaaaaaaccgcctgtcacaaagtaaattcaga         >  1:4724606‑M2/1‑9 (MQ=255)
                          aaaaaaaaaaacCGCCAAAATCAGGCGGTTTTttgt         <  1:94583/36‑1 (MQ=255)
                           aaaaaaaaaacCGCCAAAATCAGGCGGTTTTttgtt        <  1:1494628/36‑1 (MQ=255)
                            aacaagaaaccgccattcaacgatgtgcgtgtgcgt       >  1:7575555‑M2/1‑6 (MQ=255)
                            aacaaaaaaccgccattcaacgatgtgcgtgtgcgt       >  1:3885427‑M2/1‑6 (MQ=255)
                            aaaaaaaaacCGCCAAAATCAGGCGGTTTTttgttg       <  1:6957349/33‑1 (MQ=255)
                            aaaaaaaaacCGCCAAAATCAGGCGGTTTTttgttg       <  1:1202871/33‑1 (MQ=255)
                             aaaaaaaacCGCCAAAATCAGGCGGTTTTTTGTTGc      <  1:5115937/34‑1 (MQ=255)
                              caaaaaacCGCCAAAATCAGGCGGGTTTTTGTTTCt     >  1:4017061/1‑36 (MQ=25)
                               aaaaaacCGCCAAATTCGGCGGGTTTTTTTTTTCtt    >  1:3197719/1‑35 (MQ=17)
                                aaaaaccgcctgtcacaaagtaaattcagatgccag   >  1:6445006‑M2/1‑3 (MQ=255)
                                aaaaaccgccattcaacgatgtgcgtgtgcgtaccg   >  1:4807118‑M2/1‑2 (MQ=255)
                                aaaaaccgccattcaacgatgtgcgtgtgcgtaccg   >  1:479846‑M2/1‑2 (MQ=255)
                                aaaaacCGCCAAAATCAGGCGGTTTTTTTTTGCTgg   >  1:2700602/1‑36 (MQ=255)
                                 aaacccgcctgtcacaaagtaaattcagatgccagg  >  1:2486346‑M2/1‑2 (MQ=255)
                                 aaacccgccattcaacgatgtgcgtgtgcgtaccgc  >  1:6288633‑M2/1‑1 (MQ=255)
                                 aaaaccgcctgtcacaaagtaaattcagatgccagg  >  1:3425720‑M2/1‑2 (MQ=255)
                                 aaaaccgccattcaacgatgtgcgtgtgcgtaccgc  >  1:764896‑M2/1‑1 (MQ=255)
                                 aaaacCGCCAAAATCAGGCGGTTTTTTGTTGCTGGt  <  1:2526855/36‑1 (MQ=255)
                                 aaaacCGCCAAAATCAGGCGGTTTTTTGTTGCTGGt  <  1:1577395/36‑1 (MQ=255)
                                 |                                   
AAACATGTAAATTCACTTTCCTTTAAAAAACAAAAAACCGCCAAAATCAGGCGGTTTTTTGTTGCTGGT  >  REL606/2574469‑2574537

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG