Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,760,3690C→A 8.3% 0.1 ‑8.1 0.065408ygbNpredicted transporter
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/8):  ref base (39/18):  total (39/26)
Fisher's exact test strand distribution p-value = 3.10e-04
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCG  >  REL606/2760334‑2760403
                                    |                                  
cTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.cc                                    <  1:5644998/36‑1 (MQ=255)
 ttGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCa                                   >  1:4444362/1‑36 (MQ=255)
 ttGCGCCAATCATTGACGGTTTTGCCAAGGTTG.CCa                                   >  1:1856299/1‑36 (MQ=255)
  tGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCaa                                  >  1:3148104/1‑36 (MQ=255)
  tGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCaa                                  >  1:352732/1‑36 (MQ=255)
   gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa                                 <  1:3386348/36‑1 (MQ=255)
   gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa                                 >  1:5023908/1‑36 (MQ=255)
   gcgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaa                                 <  1:3528522/36‑1 (MQ=255)
    cgcCAATCATTTACGGTTTTGCCAAGGTTG.CCaaaa                                >  1:4797658/1‑36 (MQ=255)
     gcCAATCATTTACGGTTTTGCCAAGCTTGACCaaaa                                >  1:4707770/1‑36 (MQ=25)
     gcCAATCATTTACGGCTTTGCCAAGGTTG.CCAAAat                               >  1:2628994/1‑36 (MQ=255)
     gcCAACCATTTACGGCTTTGCAAAGGTTG.CCAAAat                               >  1:5441068/1‑36 (MQ=25)
      ccAATCATTTACGGTTTTGCCAAGGTTG.CCAAAata                              <  1:4194059/36‑1 (MQ=255)
      ccAATCATTTACGGTTTTGCCAAGGTTG.CCAAAata                              >  1:5361296/1‑36 (MQ=255)
       cAATCATTTACGGTTTTGCCAAGGTTG.CCAAAatat                             <  1:4397247/36‑1 (MQ=255)
        aaacATTTACGGTTTTGCCAAGGTTG.CCAAAATATc                            <  1:4584262/33‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAatagc                            >  1:4781130/1‑34 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATc                            <  1:4823638/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATc                            >  1:1267833/1‑36 (MQ=255)
        aaTCATTTACGGTTTTGCCAAGGTTG.ACAAAATATc                            >  1:2915339/1‑36 (MQ=255)
        aaTCATTTACGGTTTTGACAAGGTTG.CCAAAATATc                            <  1:2907031/36‑1 (MQ=255)
        aaTCATTTACGGTTTTGACAAGGTTG.CCAAAATATc                            <  1:3425021/36‑1 (MQ=255)
         aacATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg                           <  1:1664830/34‑1 (MQ=255)
         aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg                           >  1:5763347/1‑36 (MQ=255)
         aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg                           >  1:879649/1‑36 (MQ=255)
         aTCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCg                           >  1:1182369/1‑36 (MQ=255)
          tCATTTACGGTTTTGCCAATTTTG.CCAAAATATCGc                          <  1:5149256/36‑1 (MQ=37)
            aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa                        >  1:5412523/1‑36 (MQ=255)
            aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa                        >  1:2303222/1‑36 (MQ=255)
            aTTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCa                        >  1:1778646/1‑36 (MQ=255)
             tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc                       >  1:584638/1‑36 (MQ=255)
             tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc                       <  1:5645219/36‑1 (MQ=255)
             tttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCAc                       >  1:1053957/1‑36 (MQ=255)
              ttACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACt                      >  1:4205648/1‑36 (MQ=255)
               tACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTc                     >  1:3393442/1‑36 (MQ=255)
                aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa                    <  1:1007494/36‑1 (MQ=255)
                aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa                    <  1:5878853/36‑1 (MQ=255)
                aCGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCa                    >  1:4368548/1‑36 (MQ=255)
                 cGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaa                   <  1:1241025/36‑1 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCcaa                  >  1:5292184/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa                  >  1:5700151/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa                  >  1:5444406/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa                  >  1:1804728/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa                  >  1:4397655/1‑36 (MQ=255)
                  ggTTTTGCCAAGGTTG.CCAAAATATCGCCACTCaaa                  >  1:3931239/1‑36 (MQ=255)
                  ggTTTTGCAAAGGTTG.CAAAAATATCGCCACTCaaa                  <  1:4130191/36‑1 (MQ=37)
                    ttttGCCAAGGTTC.CAAAAATATCGCCACTCAAAtt                <  1:1950196/36‑1 (MQ=37)
                    ttttGCAAAGGTTG.CCAAAATATCGCCACTCAAAtt                <  1:1075279/36‑1 (MQ=255)
                    ttttGCAAAGATTG.CAAAAATATCGCCACTCAAAtt                <  1:1384631/36‑1 (MQ=25)
                     tttGCCAAGGTTG.CCAAAATATCGCCACTCAAAttt               >  1:1784166/1‑36 (MQ=255)
                     tttGCCAAGGTTG.CCAAAATATCGCCACTCAAAttt               <  1:2500303/36‑1 (MQ=255)
                      ttGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTg              >  1:3963842/1‑36 (MQ=255)
                      ttGCCAAGGTTG.CCAAAATATCGCCACTCAAATCTg              >  1:1051151/1‑36 (MQ=255)
                       tGCCAAGGTTG.CCAAAATATCGCCACTCAGAGTTgg             >  1:1361881/1‑36 (MQ=37)
                        gcaaaGGTTG.CAAAAATATCGCCACTCAAATTTGgc            <  1:2723017/33‑1 (MQ=37)
                        gCCAAGGTTG.CAAAAATATCGCCACTCAAATTTGgc            <  1:252107/36‑1 (MQ=255)
                          cAAGGTTG.CCAAAATATCGCCACTCAAATTTGgcct          >  1:1735819/1‑36 (MQ=255)
                          cAAGGTGG.CCAAAATATCGCCACTCAAATTTGgcct          >  1:3662529/1‑36 (MQ=255)
                            aGGTTG.CCAAAATATCGCCACTCAAATTTGgcctgc        <  1:329521/36‑1 (MQ=255)
                            aGGTTG.CCAAAATATCGCCACTCAAATTTGgcctgc        <  1:4234540/36‑1 (MQ=255)
                             ggTTG.CCAAAATATCGCCACTCAAATTTGgcctgcc       >  1:662913/1‑36 (MQ=255)
                             ggTTG.CAAAACTATCGCCACTCAAATTTGgcctgcc       <  1:1373756/36‑1 (MQ=37)
                             ggTTG.CAAAAATATCGCCACTCAAATTTGgcctgcc       <  1:2121318/36‑1 (MQ=255)
                              gTTG.CCAAAATATCGCCACTCAAATTTGgcctgcct      >  1:3040445/1‑36 (MQ=255)
                              gTTG.CAAAAATATCGCCACTCAAATTTGgcctgcct      <  1:1636597/36‑1 (MQ=255)
                                tG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGt    >  1:2880608/1‑36 (MQ=255)
                                   ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg  <  1:5079533/36‑1 (MQ=255)
                                   ccAAAATATCGCCACTCAAATTTGGCCTGCCTGTCg  >  1:1794236/1‑36 (MQ=255)
                                   ccAAAATATCGCCACTCAAATCTGGCCTGGCTGtgg  >  1:3842235/1‑34 (MQ=25)
                                    |                                  
CTTGCGCCAATCATTTACGGTTTTGCCAAGGTTG.CCAAAATATCGCCACTCAAATTTGGCCTGCCTGTCG  >  REL606/2760334‑2760403

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG