Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | 25.9% | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 15386 = | NA (NA) | 6 (0.110) | 6/64 | NT | 21.4% | noncoding (1/1343 nt) | IS186 | repeat region |
? | REL606 | = 4524527 | 22 (0.490) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
* | ? | REL606 | = 16728 | NA (NA) | 9 (0.170) | 8/64 | NT | 30.0% | noncoding (1343/1343 nt) | IS186 | repeat region |
? | REL606 | 4524522 = | 21 (0.420) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) |
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG................................... > REL606/16691‑16728
...................................GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACC > REL606/4524522‑4524556
TCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGC > 1:2834139/1‑36 (MQ=32)
AGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCG > 1:4378286/1‑36 (MQ=38)
GATGGTTCAACCCTTAAGTTAGCGCTTATGGGCCGC > 1:7238266/1‑36 (MQ=40)
TGGTTTAACCCTTAAGTTAGCGCTTATGGGCCGCAA < 1:7201532/36‑1 (MQ=255)
GTTCAACCCTTAAGTTAGCGCTTATGGGCCGCAACC < 1:7332263/36‑1 (MQ=255)
TCAACCCTTAAGTTAGCGCTTATGGGCCGCAACCCC > 1:4148069/1‑36 (MQ=255)
CCCTTAAGTTAGCGCTTATGGGCCGCAACCCCGGGT < 1:5014619/36‑1 (MQ=255)
CTTATGGGCCGCAACCCCGGGTGCTGCTAATGCGGA < 1:1372558/36‑1 (MQ=255)
ccTGGGCCGCAACCCCGGGTGCTGCTAATGCGGATG < 1:6440325/34‑1 (MQ=255)
TCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG................................... > REL606/16691‑16728
...................................GGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACC > REL606/4524522‑4524556
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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