Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,764,698 IS1 (–) +9 bp 52.5% intergenic (‑318/‑7) ppsA ← / → ydiA phosphoenolpyruvate synthase/hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241257 =NA (NA)18 (0.310) 18/66 NT 48.6% noncoding (1/768 nt) IS1 repeat region
?REL606 1764698 = 19 (0.440)intergenic (‑318/‑15) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
* ? REL606 = 176470619 (0.470)24 (0.420) 22/66 NT 55.8% intergenic (‑326/‑7) ppsA/ydiA phosphoenolpyruvate synthase/hypothetical protein
?REL606 = 1974039 NA (NA)noncoding (768/768 nt) IS1 repeat region

TTATGCTTTCATAGAATTATGTCTGCATCACGGGAAG...................................  >  REL606/1764670‑1764706
...................................AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  REL606/1974039‑1974005
                                                                        
  ATGCTTTCATAGAATTATGTCTGCATCACGGGAAGG                                    >  1:4073314/1‑36 (MQ=1)
   TGCTTTCATAGAATTATGTCTGCATCACGGGAAGGG                                   >  1:3623005/1‑36 (MQ=1)
      TTTCATAGAATTATGTCTGCATCACGGGAAGGGTAA                                >  1:2119132/1‑36 (MQ=1)
          ATAGAATTATGTCTGCATCACGGGAAGGGTAATGAC                            <  1:5498435/36‑1 (MQ=1)
          ATAGAATTATGTCTGCATCACGGGAAGGGTAATGAC                            >  1:3094612/1‑36 (MQ=1)
           TAGAATTATGTCTGCATCACGGGAAGGGTAATGACT                           >  1:3385321/1‑36 (MQ=1)
            AGAATTATGTCTGCATCACGGGAAGGGTAATGACTC                          <  1:1618273/36‑1 (MQ=1)
                TTATGTCTGCATCACGGGAAGGGTAATGACTCCAAC                      >  1:2580310/1‑36 (MQ=1)
                  ATGTCTGCATCACGGGAAGGGTAATGACTCCAACTT                    >  1:2230274/1‑36 (MQ=1)
                  ATGTCTGCATCACGGGAAGGGTAATGACTCCAACTT                    <  1:7172494/36‑1 (MQ=1)
                   TGTCTGCATCACGGGAAGGGTAATGACTCCAACTTA                   <  1:2267589/36‑1 (MQ=1)
                    GTCTGCATCACGGGAAGGGTAATGACTCCAACTTAT                  >  1:5833057/1‑36 (MQ=32)
                     TCTGCATCACGGGAAGGGTAATGACTCCAACTTATT                 <  1:6777160/36‑1 (MQ=35)
                     TCTGCATCACGGGAAGGGTAATGACTCCAACTTATT                 <  1:1276842/36‑1 (MQ=35)
                       TGCATCACGGGAAGGGTAATGACTCCAACTTATTGA               <  1:7906835/36‑1 (MQ=38)
                       TGCATCACGGGAAGGGTAATGACTCCAACTTATTGA               <  1:2099107/36‑1 (MQ=38)
                        GCATCACGGGAAGGGTAATGACTCCAACTTATTGAT              >  1:5501470/1‑36 (MQ=38)
                         CATCACGTGAAGGGTAATGACTCCAACTTATTGATA             <  1:2342855/36‑1 (MQ=255)
                         CATCACGGGAAGGGTAATGACTCCAACTTATTGATA             >  1:5297406/1‑36 (MQ=38)
                           TCACGGGAAGGGTAATGACTCCAACTTATTGATAGT           >  1:4043803/1‑36 (MQ=38)
                           TCACGGGAAGGGTAATGACTCCAACTTATTGATAGT           <  1:1975244/36‑1 (MQ=38)
                             ACGGGAAGGGTAATGACTCCAACTTATTGATAGTGT         >  1:3577214/1‑36 (MQ=38)
                               GGGAAGGGTAATGACTCCAACTTATTGATAGTGTTT       >  1:86446/1‑36 (MQ=38)
                                GGAAGGGTAATGACTCCAACTGATTGATAGTGTTTT      <  1:2382221/36‑1 (MQ=255)
                                                                        
TTATGCTTTCATAGAATTATGTCTGCATCACGGGAAG...................................  >  REL606/1764670‑1764706
...................................AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT  <  REL606/1974039‑1974005

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG