New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1462251 =23 (0.490)6 (0.130) 6/54 NT 12.5% intergenic (‑13/‑328) mokB/trg regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor
?REL606 = 3413922 61 (1.000)intergenic (‑199/‑103) yhfA/crp hypothetical protein/DNA‑binding transcriptional dual regulator

AAGATCTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCT  >  REL606/1462216‑1462286
                                   |                                   
tgtatgcaaaggacgtcacattaccgtgcagtacag                                     <  1:2990216‑M1/1‑1 (MQ=255)
tgtatgcaaaggacgtcacattaccgtgcagtacag                                     <  1:1261078‑M1/1‑1 (MQ=255)
tgtatgcaaaggacgtcacattaccgtgcagtacag                                     <  1:406893‑M1/1‑1 (MQ=255)
aaGATCTGAATTGCTAGGTTCATTCGTTGGCCTCgg                                     >  1:6545737/1‑36 (MQ=255)
 gtatgcaaagaacgtcacattaccgtgcagtacaGt                                    >  1:6787242‑M1/35‑36 (MQ=255)
 gtatgaaaaggacgtcacattaccgtgcagtacaGt                                    >  1:5145902‑M1/35‑36 (MQ=255)
 aGATCTGAATTGCTAGGTTCATTCGTTGGCCTCGGt                                    >  1:4323549/1‑36 (MQ=255)
 aGATCTGAATTGCTAGGTTCATTCGTTGGCCTCGGt                                    >  1:2141799/1‑36 (MQ=255)
  tatgcaaaggacgtcacattaccgtgcagtacaGtt                                   <  1:2993974‑M1/3‑1 (MQ=255)
  tatgcaaaggacgtcacattaccgtgcagtacaGtt                                   >  1:7561292‑M1/34‑36 (MQ=255)
  tatgcaaaggacgtcacattaccgtgcagtacaGtt                                   >  1:7560250‑M1/34‑36 (MQ=255)
  tatgcaaaggacgtcacattaccgtgcagtacaGtt                                   <  1:5697581‑M1/3‑1 (MQ=255)
  tatgcaaaggacgtcacattaccgtgcagtacaGtt                                   <  1:2117504‑M1/3‑1 (MQ=255)
  gATCTGAATTGCTAGGTTCATTCGTTGGCCTCGGtt                                   >  1:6569350/1‑36 (MQ=255)
   atgcaaaggacgtcacattaccgtgcagtacaGTTg                                  >  1:787965‑M1/33‑36 (MQ=255)
   aTCTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTg                                  <  1:1018456/36‑1 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 <  1:5265776‑M1/5‑1 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 >  1:6179844‑M1/32‑36 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 >  1:6904806‑M1/32‑36 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 <  1:3873236‑M1/5‑1 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 <  1:865735‑M1/5‑1 (MQ=255)
    tgcaaaggacgtcacattaccgtgcagtacaGTTGa                                 <  1:2406417‑M1/5‑1 (MQ=255)
     gcaaaggacgtcacattaccgtgcagtacaGTTGAt                                <  1:1377552‑M1/6‑1 (MQ=255)
     gcaaaggacgtcacattaccgtgcagtacaGTTGAt                                <  1:1388365‑M1/6‑1 (MQ=255)
     cTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGAt                                <  1:6385499/36‑1 (MQ=255)
     cTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGAt                                <  1:3589556/36‑1 (MQ=255)
      tGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATa                               <  1:2982407/36‑1 (MQ=255)
      tGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATa                               <  1:6581355/36‑1 (MQ=255)
      caaaggacgtcacattaccgtgcagtacaGTTGATa                               <  1:2118056‑M1/7‑1 (MQ=255)
       gAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAg                              <  1:2445091/36‑1 (MQ=255)
       gAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAg                              >  1:2334036/1‑36 (MQ=255)
       gAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAg                              >  1:5169589/1‑36 (MQ=255)
       aaagtacgtcacattaccgtgcagtacaGTTGATAg                              >  1:1875404‑M1/29‑36 (MQ=255)
       aaaggacgtcacattaccgtgcagtacaGTTGATAg                              >  1:2428069‑M1/29‑36 (MQ=255)
        aaTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGa                             <  1:265663/36‑1 (MQ=255)
          ttGCTAGGTTCATTCGTTGGCCTCGGTTGATAGaaa                           <  1:5371756/36‑1 (MQ=255)
            gCTGGGTTAATTCGTTGGCCTCGGTTGATAGAAata                         <  1:6918315/36‑1 (MQ=37)
            gCTAGGTTCATTCGTTGGCCTAGGTTGATAGAAata                         >  1:4066383/1‑36 (MQ=255)
              tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATAtc                       <  1:1835519/36‑1 (MQ=255)
               aGGTTCATTCGTTGGCCTCGGTTGATAGAAATAtcg                      <  1:641235/36‑1 (MQ=255)
                  ttCATTCGTTGGCCTCGGTTGATAGAAATAtcggtc                   >  1:7058235/1‑36 (MQ=255)
                   tCATTCGTTGGCCTCGGTTGATAGAAATAtcggtcg                  <  1:5298738/36‑1 (MQ=255)
                    cATTCGTTGGCCTCGGTTGATAGAAATAtcggtcgg                 >  1:5788151/1‑36 (MQ=255)
                     aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                <  1:5450465/36‑1 (MQ=255)
                     aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCggg                >  1:1671153/1‑36 (MQ=255)
                      ttCGTTGGCCTCGGTTGATAGAAATATCGGTCgggg               <  1:1090780/36‑1 (MQ=255)
                       tCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGc              >  1:3785877/1‑36 (MQ=255)
                         gtgcagtacaGTTGATAGAAATATCGGTCGGGGCCt            <  1:6812794‑M1/26‑1 (MQ=255)
                         gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCt            >  1:6020551/1‑36 (MQ=255)
                          tgcagtacaGTTGATAGAAATATCGGTCGGGGCCtt           >  1:1833950‑M1/10‑36 (MQ=255)
                           tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTc          >  1:134735/1‑36 (MQ=255)
                            ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg         >  1:7517277/1‑36 (MQ=255)
                            ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCg         <  1:4301434/36‑1 (MQ=255)
                            ggCCTCGGTTGATAGAAATATCAGTCGGGGCCTTCg         >  1:776346/1‑36 (MQ=255)
                            cagtacaGTTGATAGAAATATCGGTCGGGGCCTTCg         <  1:4894178‑M1/29‑1 (MQ=255)
                            cagtacaGTTGATAGAAATATCGGTCGGGGCCTTCg         >  1:2363815‑M1/8‑36 (MQ=255)
                             gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt        <  1:6622059/36‑1 (MQ=255)
                             gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGt        <  1:4487034/36‑1 (MQ=255)
                              ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc       >  1:1811996/1‑36 (MQ=255)
                              ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTc       <  1:6174334/36‑1 (MQ=255)
                               tacaGTTGATAGAAATATCGGTCGGGGCCTTCGTCt      >  1:5900701‑M1/5‑36 (MQ=255)
                                  ggTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTc   >  1:7670439/1‑36 (MQ=255)
                                  aGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTc   <  1:1508845‑M1/35‑1 (MQ=255)
                                   GTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCt  <  1:177199‑M1/36‑1 (MQ=255)
                                   |                                   
AAGATCTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCT  >  REL606/1462216‑1462286

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG