Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 33,798 | +G | 6.3% | coding (77/1149 nt) | carA → | carbamoyl‑phosphate synthase small subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 33,798 | 1 | .→G | 6.3% | 4.1 ‑2.6 ‑0.5 | 32 | coding (77/1149 nt) | carA | carbamoyl‑phosphate synthase small subunit |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (7/23): total (9/23) | ||||||||||
Fisher's exact test strand distribution p-value = 7.26e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.00e-01 |
TTTCACGGTCGGGCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAATACTTCAATGACCG > REL606/33764‑33833
|
tttCACGGTCGGGCCATAGGGGCAACAGGTTcggc.g < 1:5455001/36‑1 (MQ=255)
tttCACGGTCGGGCCATAGGGGCAACAGGTTcggc.g > 1:5116191/1‑36 (MQ=255)
tttCACGGTCGGGCCATAGGGGCAACAGGTTcggc.g > 1:6762067/1‑36 (MQ=255)
ttCACGGTCGGGCCATAGGGGCAACAGGTTcggc.gg > 1:7471824/1‑36 (MQ=255)
tCACGGTCGGGCCATAGGGGCAACAGGTTcggc.ggg > 1:266758/1‑35 (MQ=255)
tCACGGTCGGGCCATAGGGGCAACAGGTTCGGC.GGt < 1:5472760/36‑1 (MQ=255)
tCACGGTCGGGCCATAGGGGCAACAGGTTCGGC.GGt < 1:157270/36‑1 (MQ=255)
ggTCGGGCCATAGGGGCAACAGGTTCGGC.GGTTggg < 1:6034701/36‑1 (MQ=255)
gacGGGCCATAGGGGCAACAGGTTCGGC.GGTTgggg < 1:5882232/34‑1 (MQ=255)
gTCGGGCCATAGGGGCAACAGGTTCGGC.GGTTgggg < 1:804128/36‑1 (MQ=255)
cGGGCCATAGGGGCAACAGGTTCGGC.GGTTGGGGaa < 1:796681/36‑1 (MQ=255)
gggCCATAGGGGCAACAGGTTCGGCGGGTTgggggg > 1:3290531/1‑34 (MQ=37)
gggCCATAGGGGCAACAGGTTCGGC.GGGTggggggg > 1:4275957/1‑33 (MQ=38)
ggCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGt < 1:4413329/36‑1 (MQ=255)
ggCCATAGGGGCAACAGGTTCGGC.GGGTGGGGGAGt > 1:6239029/1‑36 (MQ=38)
gCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTc < 1:7880220/36‑1 (MQ=255)
gCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTc < 1:97140/36‑1 (MQ=255)
gCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTc < 1:4433249/36‑1 (MQ=255)
ccATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCg < 1:5545742/36‑1 (MQ=255)
ccATAGGGGCAACAGGTTCGGC.GGGTGGGGGAGGCg > 1:6685883/1‑36 (MQ=37)
cATAGGGGCAACAGGTTCGGCGGGTTGGGGAGGtgt > 1:2904965/1‑34 (MQ=25)
cATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCGt < 1:5555427/36‑1 (MQ=255)
cATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCGt < 1:5817390/36‑1 (MQ=255)
aTAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCGtt < 1:7789367/36‑1 (MQ=255)
ggggCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTc < 1:2253913/36‑1 (MQ=255)
ggggCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTc < 1:7900548/36‑1 (MQ=255)
gggCAACAGGTTCGGC.GGTTTGGGGAGGCGgttttt > 1:5585123/1‑34 (MQ=16)
ggCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTCaa < 1:5360109/36‑1 (MQ=255)
gCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAAt < 1:4613460/36‑1 (MQ=255)
gCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAAt < 1:3194976/36‑1 (MQ=255)
aaCAGGTTCGGC.GGTTTGGGGAGTCGTTTTCCATag > 1:7097183/1‑35 (MQ=25)
aaCAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAATAc < 1:6399142/36‑1 (MQ=255)
aaCAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAATAc < 1:4929549/36‑1 (MQ=255)
cAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAATACtt < 1:3583195/36‑1 (MQ=255)
ggTTCGGC.GGTTGGGGGAGGGGTTTTTTATACttta > 1:6717059/1‑34 (MQ=9)
gTTCGGC.GGTTGGGGGAGTCGTTTTTAATGCTTCaa > 1:6165037/1‑36 (MQ=25)
tCGGC.GGTTGGGGAAGTCGTTTTCAATACTTCAATg < 1:944819/36‑1 (MQ=255)
ggc.ggTTGGGGAAGTCGTTTTCAATACTTCAATTAc > 1:1765408/1‑36 (MQ=255)
ggc.ggTTGGGGAAGTCGTTTTCAATACTTCAATGAc < 1:3605062/36‑1 (MQ=255)
ggc.ggTTGGGGAAGTCGTTTTCAATACTTCAATGAc < 1:92902/36‑1 (MQ=255)
c.ggTTGGGGAAGTCGTTTTCAATACTTCAATGACCg > 1:6828871/1‑36 (MQ=255)
c.ggTTGGGGAAGTCGTTTTCAATACTTCAATGACCg < 1:3075716/36‑1 (MQ=255)
c.ggTTGGGGAAGTCGTTTTCAATACTTCAATGACCg > 1:5121958/1‑36 (MQ=255)
|
TTTCACGGTCGGGCCATAGGGGCAACAGGTTCGGC.GGTTGGGGAAGTCGTTTTCAATACTTCAATGACCG > REL606/33764‑33833
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|