Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,398,6110G→T100.0% 0.1 4624tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (3/0):  ref base (1/0):  total (4/0)

AATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCAC  >  REL606/3398579‑3398621
                                |          
aaTACGTCTTCGATCGGCAGCAGGAACGGCTTTTcc         >  1:969831/1‑35 (MQ=0)
  tACGTCTTCGATCGGCAGCAGGAACGGCTTTTTAAt       >  1:5346268/1‑36 (MQ=1)
  tACGTCTTCGATCGGCAGCAGGAAAGGCTTTTccag       >  1:4099228/1‑33 (MQ=1)
       cTTCGATCGGCAGCAGGAACGGCTTGTCAAGCCCAc  >  1:2393911/1‑36 (MQ=1)
                                |          
AATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCAC  >  REL606/3398579‑3398621

Base quality scores:  ATCG  < 3 ≤  ATCG  < 4 ≤  ATCG  < 7 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG