Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,171,682 | 0 | G→T | 8.7% | 1.7 ‑9.5 ‑0.0 | 81 | 286 | ygjT | predicted inner membrane protein, part of terminus |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (8/0): ref base (19/53): total (28/53) | ||||||||||
Fisher's exact test strand distribution p-value = 7.66e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 |
GATTGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCGTTCCG > REL606/3171648‑3171717
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gATTGAGAAATCGCTGGCGGTCGATAACGTCTTTGt < 1:2862130/36‑1 (MQ=255)
aTTGAGAAATCGCTGGCGGTCGATAACGTCTTTTTc > 1:5886275/1‑36 (MQ=255)
aTTGAGAAATCGCTGGCGGTCGATAACGTCTTTTTc > 1:7098802/1‑36 (MQ=255)
aTTGAGAAATCGCTGGCGGTCGATAACGTCTTTGTc < 1:6638348/36‑1 (MQ=255)
aTTGAGAAATCGCTGGCGGTCGATAACGTCTTTGTc > 1:7335253/1‑36 (MQ=255)
ttaagaAATCGTTGGCGTTCGATAACGTCTTTGTCt < 1:2693031/33‑1 (MQ=25)
ttGAGAAATCGCTGGCGGTCGATAACGTCTTTTTCt > 1:6443764/1‑36 (MQ=255)
ttGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCt < 1:607011/36‑1 (MQ=255)
ttGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCt < 1:7191652/36‑1 (MQ=255)
ttGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCt < 1:914529/36‑1 (MQ=255)
tGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCTg < 1:583314/36‑1 (MQ=255)
tGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCTg < 1:1494042/36‑1 (MQ=255)
tGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCTg < 1:5961970/36‑1 (MQ=255)
gagaAATCGCTGGCGGTCGATAACGTCTTTTTCttg > 1:5578080/1‑34 (MQ=37)
gagaAATCGCTGGCGGTCGATAACGTCTTTGTCTgg < 1:7396135/36‑1 (MQ=255)
agaAATCGCTGGCGGTCGATAACGTCTTTTTCTGGc > 1:4900338/1‑36 (MQ=255)
gaAATCGCTGGCGGTCGATAACGTCTTTGTCTGGCt < 1:6222508/36‑1 (MQ=255)
aaaTCGCTGGCGGTCGATAACGTCTTTGTCTGGCTg < 1:4895774/36‑1 (MQ=255)
aaTCGCTGGCGGTCGATAAGGTTTTTCTTTGGCTGa > 1:6623139/1‑36 (MQ=19)
aaTCGCTGGCGGTCGATAACGTCTTTTTCTGGTTgt > 1:3016060/1‑35 (MQ=37)
aaTCGCTGGCGGTCGATAACGTCTTTGTCTGGCTGa < 1:408832/36‑1 (MQ=255)
aaTCGCTGGCGGTCCCTAAAGTCTTTTTCTGGCttg > 1:6301310/1‑34 (MQ=12)
aTCGCTGGCGGTCGATAACGTCTTTGTCTGGCTGAt < 1:5399490/36‑1 (MQ=255)
tCGCTGGCGGTCGATAACGTCTTTGTCTGGCTGAtg < 1:499139/36‑1 (MQ=255)
tCGCTGGCGGGCGATAACGTCTTTGTCTGGCTGAtg > 1:726232/1‑36 (MQ=255)
gCTGGCGGTCGATAACGTCTTTGTCTGGCTGAtgtt < 1:3739953/36‑1 (MQ=255)
gCTGGCGGTCGATAACGTCTTTGTCTGGCTGAtgtt < 1:168334/36‑1 (MQ=255)
cTGGCGGTCGATAACGTCTTTGTCTGGCTGAtgttg < 1:5373620/36‑1 (MQ=255)
cTGGCGGTCGATAACGTCTTTGTCTGGCTGAtgttg < 1:6318746/36‑1 (MQ=255)
tGGCGGTCGATAACGTCTTTTTCTGGCTGAtgtttt > 1:1399122/1‑34 (MQ=37)
tGGCGGTCGATAACGTCTTTGTCTGGCTGAtgttgt < 1:4657177/36‑1 (MQ=255)
tGGCGGTCGATAACGTCTTTGTCTGGCNNAttttgt > 1:7832761/1‑36 (MQ=38)
tGGCGGTCGATAACGTATTTGTATGGCTGAtgttgt > 1:132539/1‑36 (MQ=37)
gggCGGTCGATAACGTCTTTGTCTGGCTGAtgttgt < 1:3173321/35‑1 (MQ=255)
ggCGGTCGATAACGTCTTTGTCTGGCTGATgttgtt < 1:5735996/36‑1 (MQ=255)
ggCGGTCGATAACGTCTTTGTCTGGCTGATgttgtt < 1:674014/36‑1 (MQ=255)
ggCGGTAGATAACGTCTTTGTCTGGCTGATgttgtt < 1:6456541/36‑1 (MQ=255)
gCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTc < 1:3198418/36‑1 (MQ=255)
gCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTc < 1:5918382/36‑1 (MQ=255)
gCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTc < 1:24151/36‑1 (MQ=255)
gCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTc < 1:1532957/36‑1 (MQ=255)
cGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTCa < 1:3934686/36‑1 (MQ=255)
cGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTCa < 1:2506245/36‑1 (MQ=255)
cGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTCa > 1:432658/1‑36 (MQ=255)
ggTCGATAACGTCTTTGTCTGGCTGATGTTGTTCAg > 1:1002712/1‑36 (MQ=255)
gTCGATAACGTCTTTGTCTGGCTGATGTTGTTCAGc < 1:6981052/36‑1 (MQ=255)
gTCGATAACGTCTTTGTCTGGCTGATGTTGTTCAGc > 1:2399865/1‑36 (MQ=255)
tCGATAACGTCTTTGTCTGGCTGATGTTGTTCAGCt < 1:7732077/36‑1 (MQ=255)
cGATAACGTCTTTGTCTGGCTGATGTTGTTCAGCTa < 1:3529280/36‑1 (MQ=255)
cGATAACGTCTTTGTCTGGCTGATGTTGTTAAgttt > 1:5213716/1‑33 (MQ=25)
gATAACGTCTTTGTCTGGCTGATGTTGTTCAGCTAt > 1:326702/1‑36 (MQ=255)
aTAACGTCTTTGTCTGGCTGATGTTGTTCAGCTAtt < 1:5726889/36‑1 (MQ=255)
aTAACGTCTTTGTCTGGCTGATGTTGTTCAGCTAtt < 1:4151960/36‑1 (MQ=255)
aaCGTCTTTGTCTGGCTGATGTTGTTCAGTTATTtc > 1:5655119/1‑36 (MQ=255)
aaCGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtc < 1:6800871/36‑1 (MQ=255)
aaCGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtc < 1:93770/36‑1 (MQ=255)
aaCGTCTTTGTCTGGCTGATGTTGTTAAGCTATTtc > 1:2932442/1‑36 (MQ=255)
aCGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtct > 1:1907519/1‑36 (MQ=255)
aCGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtct < 1:3652211/36‑1 (MQ=255)
cGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtctc < 1:3694286/36‑1 (MQ=255)
cGTCTTTGTCTGGCTGATGTTGTTCAGCTATTtctc < 1:5663715/36‑1 (MQ=255)
gTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTcc > 1:1075075/1‑36 (MQ=255)
gTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTcc < 1:6078454/36‑1 (MQ=255)
gTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTcc < 1:6965694/36‑1 (MQ=255)
gTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTcc < 1:684710/36‑1 (MQ=255)
gTCTTTGTCTGGCTGATATTGTTCAGCTATTTCTcc > 1:2334321/1‑36 (MQ=255)
tCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTcct > 1:5038460/1‑35 (MQ=255)
tCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCg > 1:3065999/1‑36 (MQ=255)
tCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCg > 1:4958295/1‑36 (MQ=255)
tCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCg < 1:2426909/36‑1 (MQ=255)
cTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCGt < 1:295178/36‑1 (MQ=255)
cTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCGt < 1:5891503/36‑1 (MQ=255)
tttGTCTGGCTGATGTTGTTCAGCTATTTCTCCGtt < 1:6628425/36‑1 (MQ=255)
tttGTCTGGCTGATGTTGTTCAGCTATTTCTCCGtt < 1:3177095/36‑1 (MQ=255)
tttGTCTGGCTGATGTTGTTCAGCTATTTCTCCGtt > 1:2102960/1‑36 (MQ=255)
tttGTCTGGCTGATGTTGTTCAGCTATTTCTCCGtt > 1:4706488/1‑36 (MQ=255)
tttGTCTGGCTGATGTTGTTCAGCTATTTCTCCGtt < 1:5249017/36‑1 (MQ=255)
ttGTCTGGCTGATGTTGTTCATCTATTTCTCCGTTc < 1:4184673/36‑1 (MQ=255)
ttGTCTGGCTGATGTAGTTCAGCTATTTCTCCGTTc < 1:2483667/36‑1 (MQ=255)
tGTCTGGCTGATGTTGTTCAGCTATTTCTCCGTTcc < 1:289156/36‑1 (MQ=255)
tGTCTGGCTGATGTTGTTCAGCTATTTCTCCGTTcc < 1:1697298/36‑1 (MQ=255)
gTCTGGCTGATGTTGTTCAGCTATTTCTCCGTTCcg < 1:5298655/36‑1 (MQ=255)
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GATTGAGAAATCGCTGGCGGTCGATAACGTCTTTGTCTGGCTGATGTTGTTCAGCTATTTCTCCGTTCCG > REL606/3171648‑3171717
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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