Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,774,1240G→T 8.0% 0.3 ‑8.5 0.090848yicJpredicted transporter
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (10/0):  ref base (31/49):  total (41/49)
Fisher's exact test strand distribution p-value = 1.96e-04
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

TAGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGTTACCCACGCAATAA  >  REL606/3774089‑3774159
                                   |                                   
tAGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTg                                     >  1:1121094/1‑36 (MQ=255)
 aGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGc                                    <  1:4944602/36‑1 (MQ=255)
 aGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGc                                    <  1:6657818/36‑1 (MQ=255)
 aGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGc                                    <  1:5973503/36‑1 (MQ=255)
  gTGACTTTACATTTCCAGTCGGTCAGAGGTTTTTcc                                   >  1:2038081/1‑36 (MQ=255)
  gTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGcc                                   <  1:533542/36‑1 (MQ=255)
   tGACTTTACATTTCCAGTCGGTCAGAGGTTTTTCCa                                  >  1:6190243/1‑36 (MQ=255)
   tGACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCa                                  >  1:5069633/1‑36 (MQ=255)
   tGACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCa                                  <  1:6193039/36‑1 (MQ=255)
   tGACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCa                                  >  1:3849858/1‑36 (MQ=255)
    gACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAg                                 <  1:5943188/36‑1 (MQ=255)
    gACTTTACATGTCCAGTCGGTCAGAGGTTTTGCCAg                                 <  1:1135714/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                >  1:263644/1‑36 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                >  1:580508/1‑36 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                >  1:3625720/1‑36 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:7062396/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:1590604/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:1490676/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:7903581/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                >  1:5176405/1‑36 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:4329256/36‑1 (MQ=255)
     aCTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:502776/36‑1 (MQ=255)
     aCTTTACATCTCCAGTCGGTCAGAGGTTTTGCCAGt                                <  1:3715880/36‑1 (MQ=255)
      cTTTACATTTCCAGTCGGTCATAGGTTTTGCCAGTg                               <  1:3006343/36‑1 (MQ=255)
      cTTTACATTTCCAGTCGGTCAGAGGTTTTTCCAGTg                               >  1:5080439/1‑36 (MQ=255)
       tttACATTTCCAGTCGGTCAGAGGTTTTTCCAGTGc                              >  1:6275119/1‑36 (MQ=255)
       tttACATTTCCAGTCGGTCAGAGGTTTTGTCAGTGc                              >  1:52095/1‑36 (MQ=255)
       tttACATTTCCAGTCGGTCAGAGGTTTTGCCAGTGc                              >  1:128822/1‑36 (MQ=255)
       tttACATTTCCAGTCGGCAATAGGTTTTGCAATTGc                              >  1:4638861/1‑36 (MQ=16)
        ttACATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCg                             <  1:4362633/36‑1 (MQ=255)
        ttACATATCCAGTCGGTCAGAGGTTTTGCCAGTGCg                             <  1:6543151/36‑1 (MQ=255)
         tACATTTCCAGTCGGTCAGAGNTTTTGCCAGTGCgg                            <  1:6954435/36‑1 (MQ=255)
         tACATTTCCAGTCGGTCAGAGGTTTTTCCAGTGCgg                            >  1:795872/1‑36 (MQ=255)
         tACATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCgg                            <  1:6887475/36‑1 (MQ=255)
          aCATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGa                           <  1:4200021/36‑1 (MQ=255)
           cATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGaa                          <  1:5231770/36‑1 (MQ=255)
           cATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGaa                          <  1:6949273/36‑1 (MQ=255)
           cATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGaa                          >  1:1304579/1‑36 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTTCCAGTGCGGAAc                         >  1:1080599/1‑36 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTTCCAGTCCGGAAc                         >  1:3296902/1‑36 (MQ=37)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         >  1:917775/1‑36 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         <  1:8265612/36‑1 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         <  1:3108758/36‑1 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         <  1:4230549/36‑1 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         <  1:2194052/36‑1 (MQ=255)
            aTTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAc                         >  1:178331/1‑36 (MQ=255)
             tttCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAcc                        <  1:4657198/36‑1 (MQ=255)
             tttCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAcc                        >  1:7860979/1‑36 (MQ=255)
             tttCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAAcc                        <  1:7273649/36‑1 (MQ=255)
              ttCCAGTCGGTCAGAGGGTTTTCCAGTGGGGAACCa                       >  1:4614032/1‑36 (MQ=25)
               tCCAGTCTGTCAGAGGTTTTGCCAGTGCGGAACCaa                      <  1:4351709/36‑1 (MQ=255)
               tCCAGTCGGTCAGAGGTTTTTCCCGTGCGGGAccca                      >  1:2850447/1‑34 (MQ=25)
               tCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCaa                      >  1:2708877/1‑36 (MQ=255)
                ccAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAAt                     >  1:4627703/1‑36 (MQ=255)
                 cAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATc                    <  1:2278571/36‑1 (MQ=255)
                 cAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATc                    <  1:6142656/36‑1 (MQ=255)
                 cAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATc                    <  1:3533191/36‑1 (MQ=255)
                 cAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATc                    <  1:1430910/36‑1 (MQ=255)
                 cAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATc                    <  1:8011910/36‑1 (MQ=255)
                  aGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCa                   <  1:6783227/36‑1 (MQ=255)
                  aGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCa                   <  1:1648438/36‑1 (MQ=255)
                   gTCGGTCAGAGGTTTTTCCAGTGCGGAACCAATCAg                  >  1:5638257/1‑36 (MQ=255)
                   gTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAg                  <  1:76891/36‑1 (MQ=255)
                   gTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAg                  <  1:316580/36‑1 (MQ=255)
                    tCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAgg                 >  1:1550043/1‑36 (MQ=255)
                     cGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGt                <  1:341389/36‑1 (MQ=255)
                      ggTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGtt               <  1:335330/36‑1 (MQ=255)
                      ggTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGtt               >  1:539329/1‑36 (MQ=255)
                      ggTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGtt               <  1:3982228/36‑1 (MQ=255)
                      ggTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGtt               >  1:4250261/1‑36 (MQ=255)
                      ggTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGtt               <  1:4240992/36‑1 (MQ=255)
                          agagGTTTTGCCAGTGCGGAACCAATCAGGTTAccc           >  1:1763732/1‑36 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          >  1:7726/1‑36 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          >  1:119912/1‑36 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          >  1:4683733/1‑36 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          <  1:6265859/36‑1 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          >  1:6657158/1‑36 (MQ=255)
                           gagGTTTTGCCAGTGCGGAACCAATCAGGTTACCCa          >  1:2625268/1‑36 (MQ=255)
                            agGTTTTGCCAGTGCGGAACCAATCAGGTTACCCAc         >  1:3157142/1‑36 (MQ=255)
                            agGTTTTGCCAGTGCGGAACCAATCAGGTTACCCAc         <  1:4957112/36‑1 (MQ=255)
                             ggTTTTGCCAGTGCGGAACCAATCAGGTTACCCACg        >  1:7085632/1‑36 (MQ=255)
                              gTTTTGCCAGTGCGGAACCAATCAGGTTACCCACGc       >  1:30577/1‑36 (MQ=255)
                               ttttGCCAGTGCGGAACCAATCAGGTTACCCACGCa      >  1:6961266/1‑36 (MQ=255)
                               ttttGCCAGTGCGGAACCAATCAGGTTACCCACGCa      >  1:7121619/1‑36 (MQ=255)
                               ttttGCCAGTGCGGAACCAATCAGGTTACCCACGCa      <  1:1031336/36‑1 (MQ=255)
                                tttGCCAGTGCGGAACCAATCAGGTTACCCACGCaa     >  1:4002981/1‑36 (MQ=255)
                                tttGCCAGTGCGGAACCAATCAGGTTACCCACGCaa     >  1:1030462/1‑36 (MQ=255)
                                 ttGCCAGTGCGGAACCAATCAGGTTACCCACGCAAt    <  1:8320196/36‑1 (MQ=255)
                                  tGCCAGTGCGGAACCAATCAGGTTACCCACGCAATa   <  1:3101683/36‑1 (MQ=255)
                                  tGCCAGTGCGGAACCAATCAGGTTACCCACGCAATa   <  1:7613273/36‑1 (MQ=255)
                                  tGCCAGTGCGGAACCAATCAGGTTACCCACGCAATa   <  1:4775306/36‑1 (MQ=255)
                                   gCCAGTGCGGAACCAATCAGGTTACCCACGCAATaa  <  1:2975218/36‑1 (MQ=255)
                                   gCCAGTGCGGAACCAATCAGGTTACCCACGCAATaa  >  1:5979246/1‑36 (MQ=255)
                                   gCCAGTGCGGAACCAATCAGGTTACCCACGCAATaa  >  1:1521239/1‑36 (MQ=255)
                                   |                                   
TAGTGACTTTACATTTCCAGTCGGTCAGAGGTTTTGCCAGTGCGGAACCAATCAGGTTACCCACGCAATAA  >  REL606/3774089‑3774159

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG