Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,282,469 | A→G | 24.7% | E819G (GAA→GGA) | narG → | nitrate reductase 1, alpha subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,282,469 | 0 | A→G | 24.7% | 5.6 ‑3.5 0.0 | 32 | 2456 | narG | nitrate reductase 1, alpha subunit |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (13/10): total (22/10) | ||||||||||
Fisher's exact test strand distribution p-value = 3.17e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ACCCGCTGTCTGCGGCGGTCGATCCGGCCTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGCCAT > REL606/1282436‑1282502
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aCCCGCTGTCTGCGGCGGTTGCTCCGGCATGGGGAg > 1:6608270/1‑36 (MQ=12)
cGCTGTCTGCGGCGGGCGATCCGGCCTGGGGAGCgg > 1:6817858/1‑35 (MQ=18)
gCTGTCTGCGGCGGTTGCGGCCGCCTGGGAAGCgga > 1:4484601/1‑34 (MQ=9)
gCTGTCTGCGGCGGTCGATCCGGCCTTGGGAGCgga > 1:4060084/1‑34 (MQ=18)
gCTGTCTGCGGCGGTCCCTCCCGACTGGGGAGTGaa > 1:6167495/1‑36 (MQ=9)
cTGTCTGCGGCGGTTGATCCCGCCTTGGGAGCGaaa > 1:3693892/1‑36 (MQ=19)
tGTCTGCGGCGGTCCATCCGGCCTTGGGAGCGgaaa > 1:1529600/1‑36 (MQ=16)
tGTCTGCGGCGGCCGCTCCGGCCTTGGGAGCCaaaa > 1:6748336/1‑36 (MQ=16)
gTCTGCGGCGGTCGATCCGGCCTGGGAAGCGAAAAg < 1:6427203/36‑1 (MQ=255)
tCTGCGGCGGTCGGTCCCGCCTTGGGAGCGgaaaag > 1:5704422/1‑34 (MQ=12)
gcggcgGTCGATCCGGCCTGGGAAGCGAAAAGCGAc < 1:1208333/36‑1 (MQ=255)
cggcggTCGATCCGGCCTGGGAAGCGAAAAGCGACt < 1:2274064/36‑1 (MQ=255)
ggcggTCGATCCGGCCTGGGTAGCGAAAAGCGATTg > 1:5040115/1‑36 (MQ=25)
ggcggTCGATCCGGCCTGGGAAGCGAAAAGCGACTg > 1:1219829/1‑36 (MQ=255)
gcggTCGATCCGGCCTGGGAAGCGAAAAGCGACTgg > 1:5684605/1‑36 (MQ=255)
cggTCGATCCGGCCTGGGAAGCGAAAAGCGACTggg < 1:6817461/36‑1 (MQ=255)
gTCGATCCGGCCTGGGAAGCGAAAAGCGACTGGGaa > 1:5766660/1‑36 (MQ=255)
gATCCGGCATGGGAAGCGAAAAGCGACTGGGAAATc < 1:2942200/36‑1 (MQ=255)
aTCCGGCCTGGGAAGCGAAAAGCGACTGGGAAATCt > 1:1467823/1‑36 (MQ=255)
tCCGGCCTGGTAAGCGAAAAGCGACTGGGAAATCTa < 1:7185987/36‑1 (MQ=255)
cGGCCTGGGAAGCGAAAAGCGACTGGGAAATCTACa > 1:2553940/1‑36 (MQ=255)
ggCCTGGGAAGCGAAAAGCGACTGGGAAATCTACaa > 1:2441156/1‑36 (MQ=255)
ggCCTGGGAAGCGAAAAGCGACTGGGAAATCTACaa < 1:119716/36‑1 (MQ=255)
cTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGc > 1:7208024/1‑36 (MQ=255)
cTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGc < 1:5505508/36‑1 (MQ=255)
cTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGc < 1:4089112/36‑1 (MQ=255)
cTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGc > 1:4024677/1‑36 (MQ=255)
cTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGc > 1:1456510/1‑36 (MQ=255)
tGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGcc > 1:5705495/1‑36 (MQ=255)
tGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGcc > 1:4967283/1‑36 (MQ=255)
tGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGcc > 1:4649146/1‑36 (MQ=255)
ggAAGCGAAAAGCGACTGGGAAATCTACAAAGCCAt < 1:271707/36‑1 (MQ=255)
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ACCCGCTGTCTGCGGCGGTCGATCCGGCCTGGGAAGCGAAAAGCGACTGGGAAATCTACAAAGCCAT > REL606/1282436‑1282502
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 4 ≤
ATCG
< 12 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|