Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,121,304 | Δ1 bp | 10.0% | intergenic (+86/‑30) | ECB_02011 → / → ECB_02012 | protein similar to bacteriophage P2 C protein/integrase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,121,304 | 0 | A→. | 10.0% | 5.1 ‑1.3 ‑0.0 | 30 | intergenic (+86/‑30) | ECB_02011/ECB_02012 | protein similar to bacteriophage P2 C protein/integrase |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (16/11): total (19/11) | ||||||||||
Fisher's exact test strand distribution p-value = 2.79e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.93e-01 |
TTTCAGCCACCACGAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCACTCGGAGGGTTTTCTGATGGCA > REL606/2121269‑2121339
|
tttCAGCCACCACGAAAAAAGCGATTAGTAGTAGCa < 1:2744602/36‑1 (MQ=255)
ttCAGCCACCACGAAAAAAGCGATTAGTAGTAGCaa < 1:5502886/36‑1 (MQ=255)
ttCAGCCACCACGAAAAAAGCGATTAGTAGTAGCaa < 1:4934106/36‑1 (MQ=255)
tCATCCACCACGAAAAAAGCGATTAGTAGTAGCaaa < 1:6599405/36‑1 (MQ=255)
tCAGCCACCACGAAAAAAGCGATTAGTAGTAGCaaa < 1:4515800/36‑1 (MQ=255)
cAGCCACCACGAAAAAAGCGATTAGTAGTAGCaaaa > 1:78624/1‑36 (MQ=255)
aGCCAACACGAAAACATCGCTTAGTAGTAGCaaaaa < 1:6620687/36‑1 (MQ=19)
gCCACCACGAAAAAAGCGATTAGTAGTAGCaaaaaa > 1:8263665/1‑36 (MQ=255)
gCCACCACGAAAAAAGCGATTAGTAGTAGCaaaaaa > 1:4888747/1‑36 (MQ=255)
ccaccaCGAAAAAAGCGATTAGTAGTAGCaaaaaaa < 1:133444/36‑1 (MQ=255)
ccacaaCGAAAAAAGCGATTAGTAGTAGCaaaaaaa < 1:2192238/36‑1 (MQ=255)
caccacGAAAAAAGCGATTAGTAGTAGCaaaaaaaa > 1:7214972/1‑36 (MQ=255)
caccacGAAAAAAGCGATTAGTAGTAGCaaaaaaaa > 1:6009264/1‑36 (MQ=255)
caccacGAAAAAAGCGATTAGTAGTAGCaaaaaaaa > 1:1710750/1‑36 (MQ=255)
caccacGAAAAAAGCGATTAGTAGTAGCaaaaaaaa < 1:2142965/36‑1 (MQ=255)
acGAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTAc > 1:1923155/1‑36 (MQ=255)
gAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCa > 1:3064698/1‑36 (MQ=255)
gAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCa > 1:7478234/1‑36 (MQ=255)
gAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCa > 1:6147477/1‑36 (MQ=255)
gAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCa < 1:1984208/36‑1 (MQ=255)
aaaaaGCGATTAGTAGTAGCAAAAAAAAGTACCACt < 1:7409724/36‑1 (MQ=255)
aaaaaGCGATTAGTAGTAGCAAAAAAAAGTACCACt > 1:5945594/1‑36 (MQ=255)
aaaaGCGATTAGTAGTAGCAAAAAAAAGTACCACTc < 1:6976891/36‑1 (MQ=255)
aaaaGCGATTAGCAGAAGCAAAAAAAAGTACCACTc > 1:4846399/1‑36 (MQ=37)
anGCGATTAGTAGTANCAAANAAAAGTACCACTCgg < 1:2461462/36‑1 (MQ=255)
gCGATTAGTAGTAGCAAAAAAACGTACCACTCGGAg < 1:7475376/36‑1 (MQ=255)
gCGATTAGGAGGAGCAAAAAAAAGAACCACTCggtg > 1:7848593/1‑34 (MQ=21)
gATTAGTAGTAGCAAAAAAAAGTACCACTCGGAggg > 1:4590037/1‑36 (MQ=255)
gATTAGTAGTAGCAAAAAAAAGTACCACTCGGAggg > 1:6746602/1‑36 (MQ=255)
ttAGTAGTAGCAAAAAAAAGTACCACTCGGAGGGtt < 1:8245748/36‑1 (MQ=255)
tagtagtagCAAAAAAAAGTACCACTCGGAGGGttt < 1:6289995/36‑1 (MQ=255)
tagtagtagCAAAAAAAAGTACCACTCGGAGGGttt > 1:6610414/1‑36 (MQ=255)
tagtagtagC.AAAAAAAGTACCACTCGGAGGGtttt > 1:8214720/1‑36 (MQ=38)
agtagtagCAAAAAAAAGTACCACTCGGAGGGtttt < 1:3633843/36‑1 (MQ=255)
agtagtagC.AAAAAAAGTACCACTCGGAGGGTTTTc > 1:2175140/1‑36 (MQ=38)
gtagtagCAAAAAAAAGTACCACTCGGAGGGTTTTc > 1:6926124/1‑36 (MQ=255)
tagtagCAAAAAAAAGTACCACTCGGAGGGTTTTCt > 1:1810523/1‑36 (MQ=255)
tagtagC.AAAAAAAGTACCACTCGGAGGGTTTTCTg > 1:1972455/1‑36 (MQ=38)
agtagCAAAAAAAAGTACCACTCGGAGGGTTTTCTg > 1:7069410/1‑36 (MQ=255)
agtagCAAAAAAAAGTACCACTCGGAGGGTTTTCTg < 1:6625940/36‑1 (MQ=255)
gtagCAAAAAAAAGTACCACTCGGAGGGTTTTCTGa < 1:6518267/36‑1 (MQ=255)
gtagCAAAAAAAAGTACCACTCGGAGGGTTTTCTGa > 1:8315675/1‑36 (MQ=255)
tagCAAAAAAAAGTACCACTCGGAGGGTTTTCTGAt > 1:4285790/1‑36 (MQ=255)
tagCAAAAAAAAGTACCACTCGGAGGGTTTTCTGAt < 1:1413441/36‑1 (MQ=255)
gCAAAAAAAAGTACCACTCGGAGGGTTTTCTGATgg > 1:8431587/1‑36 (MQ=255)
aaaaaaaaGTACCACTCGGAGGGTTTTCTGATGGCa > 1:413967/1‑36 (MQ=255)
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TTTCAGCCACCACGAAAAAAGCGATTAGTAGTAGCAAAAAAAAGTACCACTCGGAGGGTTTTCTGATGGCA > REL606/2121269‑2121339
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 26 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|