Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 209,697 | C→G | 18.7% | A577G (GCG→GGG) | dnaE → | DNA polymerase III subunit alpha |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 209,697 | 0 | C→G | 18.7% | 2.4 ‑3.1 0.0 | 25 | 1730 | dnaE | DNA polymerase III subunit alpha |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (9/11): total (14/11) | ||||||||||
Fisher's exact test strand distribution p-value = 4.64e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAACTGGGCGCTGGAGATGATCAACAAGCGGCGGGCGAAGAATGGCGAGCCGCCGCTGGATATCGCCGC > REL606/209662‑209730
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caACTGGGCGCTGGAGATGATCAACAAGCggcgggc < 1:2551172/36‑1 (MQ=255)
aaCTGGGCGCTGGAGATGATCAACAAGCggcgggcg > 1:6252228/1‑36 (MQ=255)
cTGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaa < 1:2413108/36‑1 (MQ=255)
cTGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaa < 1:2478146/36‑1 (MQ=255)
cTGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaa < 1:7224356/36‑1 (MQ=255)
tGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaag < 1:7476327/36‑1 (MQ=255)
tGGGCGCTGGAGATGATCAACAAGCGGCGGGCgaag < 1:485455/36‑1 (MQ=255)
gcgcTGGAGATGATCAACAAGCGGCGGGGgaagaaa > 1:1023894/1‑35 (MQ=255)
gcgcTGGAGATGATCAACAAGCGGCGGGCGAAGAAt < 1:7410989/36‑1 (MQ=255)
gcgcTGGAGATGATCAACAAGCGGCGGGCGAAGAAt < 1:5632856/36‑1 (MQ=255)
gcgcTGGAGATGATCAACAAGCGGCGGGCGAAGAAt < 1:4347422/36‑1 (MQ=255)
gcTGGAGATGATCAACAAGCGGCGGGGGGAGAAAgg > 1:2846702/1‑36 (MQ=25)
ggAGATGATCAACAAGCGGCGGGGGGAGAATTGCgg > 1:6760756/1‑35 (MQ=21)
ggAGATGATCAACAAGCGGCGGGCGGAGGATGGCGa > 1:7775417/1‑36 (MQ=38)
gagaTGATCAACAAGCGGCGGGCGAAGAATGGCGAg < 1:6269156/36‑1 (MQ=255)
gagaTGATCAACAAGCGGCGGGCGAAGAATGGCGAg > 1:530865/1‑36 (MQ=255)
gagaTGATCAACAAGCGGCGGGCGAAGAATGGCGAg < 1:7060626/36‑1 (MQ=255)
gagaTGATCAACAAGCGCCGGGCGCAGAAAGGCGAg > 1:1109725/1‑36 (MQ=21)
agaTGATCAACAAGCGGCGGGCGGAGAATGGCGAgc > 1:4247431/1‑36 (MQ=255)
gatgatCAACAAGCGGCGGGCGGAGAATGGGGAggc > 1:4740122/1‑34 (MQ=25)
atgatCAACAAGCGGCGGGGGCGGAAAGGCGGgccg > 1:5363834/1‑36 (MQ=16)
gatCAACAAGCGGCGGGCGGAGAATGGCGAggcgcc > 1:3669306/1‑36 (MQ=37)
gatCAACAAGCGGCGGGCGAAGAATGGCGAggcgcc > 1:1016095/1‑36 (MQ=255)
gatCAACAAGCGGCGGGCGAAGAATGGCGAgccgcc < 1:8190446/36‑1 (MQ=255)
atCAACAAGCGGCGGGGGAAGAATGGCGAGgcgccg > 1:2858405/1‑36 (MQ=37)
tCAACAAGCGGCGGGCGAAGAATGGCGAGCcgccgc > 1:6615196/1‑36 (MQ=255)
aacaaGCGGCGGGCGAAGAAAGGGGGGCcgccgccg > 1:3162757/1‑34 (MQ=21)
ggcgggcgAAGAATGGCGAGCCGCCGCTGGATATcg < 1:4125722/36‑1 (MQ=255)
ggcgggcgAAGAATGGCGAGCCGCCGCTGGATATcg > 1:8354637/1‑36 (MQ=255)
ggcgggcgAAGAATGGCGAGCCGCCGCCGGATATcg > 1:6508381/1‑36 (MQ=255)
gcgggagAAGAATGGCGAGCCGCCGCTGGATATcgc < 1:7025265/36‑1 (MQ=255)
cgggcgAAGAATGGCGAGCCGCCGCTGGATATcgcc > 1:6346460/1‑36 (MQ=255)
gggcgAAGAATGGCGAGCCGCCGCTGGATATcgccg > 1:3577259/1‑36 (MQ=255)
ggcgAAGAATGGCGAGCCGCCGCTGGATATcgccgc > 1:4536242/1‑36 (MQ=255)
ggcgAAGAATGCCGCCCCCCCGCGGGATATcgccgc < 1:6611687/36‑1 (MQ=16)
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CAACTGGGCGCTGGAGATGATCAACAAGCGGCGGGCGAAGAATGGCGAGCCGCCGCTGGATATCGCCGC > REL606/209662‑209730
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 4 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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