New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 237270 (0.000)36 (0.880) 24/64 NT 100% noncoding (437/768 nt) IS1 repeat region
?REL606 = 666130 NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 111 total aligned reads displayed.

GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCAC  >  REL606/23692‑23758
                                   |                               
gggtaaaTCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1979802‑M1/33‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTGCGCGTA                                 >  1:4774133‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTATGCGTA                                 >  1:2711059‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:3895259‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:3702674‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:3658090‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:2419883‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:2532150‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:3466236‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:2606053‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1611726‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:261027‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 >  1:5718187‑M1/1‑36 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:588466‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1303187‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:316249‑M1/36‑1 (MQ=255)
ggCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1181976‑M1/36‑1 (MQ=255)
 tctAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:78447‑M1/35‑2 (MQ=255)
 gCTAAATCGCGCTAGCGCTGGCTGTTTTACGCGTAt                                <  1:1386363‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCGGCGCTGGCTGTTTTACGCGTAt                                <  1:1637082‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGNCTGTTTTACGCGTAt                                <  1:5161319‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTCCGCGTAt                                <  1:5896885‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:3162845‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:3315009‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:2919691‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                >  1:4061698‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:4096722‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:4223455‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:4436916‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:453842‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:4644118‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:5273721‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:5382985‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                >  1:5821223‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:740195‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:773368‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:852518‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:1105263‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                >  1:117133‑M1/1‑35 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:1706575‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:1762602‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:1983872‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:2124706‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:2564539‑M1/36‑2 (MQ=255)
 gCTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTAt                                >  1:464779‑M1/1‑35 (MQ=255)
 gCTAAACCGCGCCAGCGCTGGCTGTTTTACGCGTAt                                <  1:2723267‑M1/36‑2 (MQ=255)
  cTAAATCGCGCCAGGGCTGGCTGTTTTACGCGTAtg                               <  1:3897979‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTATGCGTAtt                               >  1:5028387‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACTCGTAtg                               >  1:651271‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtt                               >  1:2684438‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               <  1:1295328‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               <  1:5688398‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               >  1:3969159‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               >  1:5200798‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               >  1:258382‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               >  1:2613030‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               <  1:5030160‑M1/36‑3 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtg                               >  1:4914467‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGCTGTTTTACGCGAAtt                               >  1:1612272‑M1/1‑34 (MQ=255)
  cTAAATCGCGCCAGCGCTGGATGTTTTACGCGTAtg                               <  1:2094446‑M1/36‑3 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtta                              >  1:4797163‑M1/1‑33 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtta                              >  1:4781804‑M1/1‑33 (MQ=255)
   tAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAtta                              >  1:240366‑M1/1‑33 (MQ=255)
    aaaTCGCGCCAGCGCTGGCTGTTTTACGCGTAttac                             >  1:4536917‑M1/1‑32 (MQ=255)
    aaaTCGCGCCAGCGCTGGCTGTTTTACGCGTAttac                             >  1:5403394‑M1/1‑32 (MQ=255)
     aaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtgtac                            <  1:1769336‑M1/36‑6 (MQ=255)
     aaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtgtac                            <  1:3685439‑M1/36‑6 (MQ=255)
     aaTCGCGCCAGCGCTGGCTGTTTTACGCGTAtgtac                            <  1:5600947‑M1/36‑6 (MQ=255)
      aTCGCGCCAGCGCTGGCTGTTTTACGCGTAtgtact                           <  1:5230431‑M1/36‑7 (MQ=255)
       tCGCGCCAGCGCTGGCTGTTTTACGCGTAtttactt                          >  1:38402‑M1/1‑29 (MQ=255)
        cgcgCCATCGCTGGCTGTTTTACGCGTAtgtactga                         <  1:1538999‑M1/36‑9 (MQ=255)
         gcgcCAGCGCTGGCTGTTTTACGCGTAtgtactgac                        >  1:4654631‑M1/1‑27 (MQ=255)
         gcgcCAGCGCTGGCTGTTTTACGCGTAtgtactgac                        <  1:432554‑M1/36‑10 (MQ=255)
           gcCAGCGCTGGCTGTTTTACGCGTAtttactgaccc                      >  1:1141244‑M1/1‑25 (MQ=255)
             cAGCGCTGGCTGTTTTACGCGTAtgtactgacccca                    <  1:5307933‑M1/36‑14 (MQ=255)
              aGCGCTGGCTGTTTTACGCGTAtgtactgaccccaa                   <  1:1421350‑M1/36‑15 (MQ=255)
              aGCGCTGGCTGTTTTACGCGTAtgtactgaccccaa                   <  1:3531869‑M1/36‑15 (MQ=255)
               gcgcTGGCTGTTTTACGCGTTtgtactgaccccaaa                  >  1:3179497‑M1/1‑21 (MQ=255)
               gcgcTGGCTGTTTTACGCGTAtgtactgaccccaaa                  >  1:435081‑M1/1‑21 (MQ=255)
                  ctggctgTTTTACGCGTAtgtactgaccccaaaaag               <  1:4914893‑M1/36‑19 (MQ=255)
                     gctgTTTTACGCGTAtgtactgaccccaaaaagttg            >  1:2363949‑M1/1‑15 (MQ=255)
                     gctgTTTTACGCGTAtgtactgaccccaaaaagttg            >  1:1571398‑M1/1‑15 (MQ=255)
                      ctgTTTTACGCGTAtgtactgaccccaaaaagttgg           >  1:424332‑M1/1‑14 (MQ=255)
                       tgTTTTACGCGTAtgtactaaccccaaaaagttgga          >  1:1892948‑M1/1‑13 (MQ=255)
                        gTTTTACGCGTAtgtactgaccccaaaaagttggac         >  1:3972769‑M1/1‑12 (MQ=255)
                        gTTTTACGCGTAtgtactgaccccaaaaagttggac         <  1:5867629‑M1/36‑25 (MQ=255)
                        gTTTTACGCGTAtgtactgaccccaaaaagttggac         >  1:4154537‑M1/1‑12 (MQ=255)
                        gTTTTACGCGTAtgtactgaccccaaaaagttggac         >  1:1255268‑M1/1‑12 (MQ=255)
                         ttttACGCGTAtgtactgaccccaaacagttggaca        >  1:762742‑M1/1‑11 (MQ=255)
                         ttttACGCGTAtgtactgaccccaaaaagttggaca        >  1:196983‑M1/1‑11 (MQ=255)
                         ttttACGCGTAtgtactgaccccaaaaagttggaca        >  1:589968‑M1/1‑11 (MQ=255)
                         ttttACGCGTAtgtactgaccccaaaaagttggaca        >  1:5911784‑M1/1‑11 (MQ=255)
                          tttACGCGTAtgtactgaccccaaaaagttggaaag       >  1:1592056‑M1/1‑10 (MQ=255)
                           ttACGCGTAtgtactgaccccaaaaagttggacagt      <  1:5281451‑M1/36‑28 (MQ=255)
                           ttACGCGTAtgtactgaccccaaaaagttggacagt      >  1:1957861‑M1/1‑9 (MQ=255)
                            tACGCGTAtgtactgaccccaaaaagttggacagtt     <  1:504952‑M1/36‑29 (MQ=255)
                             aCGCGTAtgtactgaccccaaaaagttggacagtta    >  1:5485647‑M1/1‑7 (MQ=255)
                             aCGCGTAtgtactgaccccaaaaagttggacagtta    <  1:3467705‑M1/36‑30 (MQ=255)
                              cgcgTAtgtactgaccccaaaaagttggacagttaa   <  1:3464020‑M1/36‑31 (MQ=255)
                               gcgTAtgtactgaccccaaaaagttggacagttaaa  <  1:4686943‑M1/36‑32 (MQ=255)
                                   |                               
GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCAC  >  REL606/23692‑23758

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG