Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,205,690 | A→T | 19.7% | K978* (AAA→TAA) | metH → | B12‑dependent methionine synthase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,205,690 | 0 | A→T | 19.7% | 4.5 ‑4.0 0.0 | 44 | 2932 | metH | B12‑dependent methionine synthase |
Reads supporting (aligned to +/- strand): new base (10/0): ref base (20/14): total (30/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.83e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GAAGTGGTGGGCGTTGAGGCGCAGCGGCTGTTTAAAGACGCCAACGACATGCTGGATAAATTAAGCGCC > REL606/4205657‑4205725
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gAAGTGGTGGGCGTTGAGGCGCAGCGGCTGGTTtaa > 1:4450455/1‑36 (MQ=37)
aaGTGGTGGGCGTTGAGGCGCAGCGGCTGTTTTAAg > 1:3839472/1‑36 (MQ=255)
aaGTGGTGGGCGCTGAGGCGCAGCGGCTGTTTTAAg > 1:2470299/1‑36 (MQ=37)
aGTGGTGGGCGTTGAGGCGCAGCGGCTGTTTTAAGa > 1:6637204/1‑36 (MQ=255)
aGTGGTGGGCGTTGAGGCGCAGCGGCTGTTTAAAGa < 1:2822434/36‑1 (MQ=255)
gtggtgGGCGTTGAGGCGCAGCGGCTGTTTAAAGAc < 1:6491202/36‑1 (MQ=255)
tggtggGCGTTGAGGCGCAGCGGCTGGTTTAAGACg > 1:5451045/1‑36 (MQ=37)
gtggGCGTTGAGGCGCAGCGGCTGTTTTAAGACGcc > 1:3039258/1‑36 (MQ=255)
tggGCGTTGAGGCGCAGCGGCTGGTTAAAGACGCCa > 1:5707693/1‑36 (MQ=255)
gggCGTTGAGGCGCAGCGGCTGTTTTAAGACGccca > 1:6843613/1‑34 (MQ=38)
gTTGAGGCGCAGCGGCTGTTTTAAGACGCCAACGAc > 1:772314/1‑36 (MQ=255)
gTTGAGGCGCAGCGGCTGTTTAAAGACGCCAACGAc > 1:7814829/1‑36 (MQ=255)
gTTGAGGCGCAGCGGCTGTTTAAAGACGCCAACGAc < 1:4567650/36‑1 (MQ=255)
ttGAGGCGCAGCGGCTGTTTAAAAACGCCACAGACa > 1:2506952/1‑36 (MQ=25)
tGAGGCGCAGCGGCTGTTTTAAGACGCCAACGACaa > 1:5773873/1‑35 (MQ=255)
tGAGGCGCAGCGGCTGTTTAAAGACGCCAACGACAt < 1:7174368/36‑1 (MQ=255)
gAGGCGCAGCGGCTGTTTTAAGACGCCAACGACATg > 1:4065445/1‑36 (MQ=255)
ggCGCAGCGGCTGTTTAAAGACGCCAACGACATGCt < 1:3581156/36‑1 (MQ=255)
gcgcAGCGGCTGTTTAAAGACGCCAACGAAATGCTg > 1:7205354/1‑36 (MQ=255)
cAGCGGCTGTTTAAAGACGCCAACGACATGCTGGAt < 1:1290354/36‑1 (MQ=255)
aGCGGCTGGTTTAAGACGCCAACGACAAGCTGGGTa > 1:7101608/1‑36 (MQ=19)
cGGCTGTTTAAAGACGCCAACGACATGCTGGATaaa > 1:4209781/1‑36 (MQ=255)
ggCTGTTTAAAGACGCCAACGACATGCTGGATAAAt > 1:3777719/1‑36 (MQ=255)
ggCTGTATAAACACGCCAACGACATGCTGGATAAAt < 1:3342469/36‑1 (MQ=37)
gCTGTTTAAAGACGCCATCGACATGCTGGATAAAtt < 1:2781516/36‑1 (MQ=255)
gCTGTTTAAAGACGCCAACGACATGCTGGATAAAtt < 1:7016546/36‑1 (MQ=255)
gCTGTTTAAAGACGCCAACGACATGCTGGATAAAtt > 1:4611501/1‑36 (MQ=255)
gCTGTTTAAAGACGCCAACGACATGCTGGATAAAtt > 1:2584636/1‑36 (MQ=255)
taattAAAGACACCAGCGACATGCTGGATAAATTaa < 1:6110316/33‑1 (MQ=21)
tGTTTAAAGACGCCAACGACATGCTGGATAAATTaa > 1:4041013/1‑36 (MQ=255)
tGTTTAAAGACGCCAACGACATGCTGGATAAATTaa > 1:1957987/1‑36 (MQ=255)
tGTTTAAAGACGCCAACGACATGCTGGATAAATTaa < 1:5705613/36‑1 (MQ=255)
tGTTTAAAGACGACAACGACAGGCTGGATAAATTaa > 1:1240813/1‑36 (MQ=38)
gTTTAAAGACGCCAACGACATGCTGGATAAATTAAg > 1:2610120/1‑36 (MQ=255)
gTTTAAAGACGCCAACGACATGCTGGATAAATTAAg > 1:7662062/1‑36 (MQ=255)
tttAAAGACGCCAACGACATGCTGGATAAATTAAgc < 1:6161229/36‑1 (MQ=255)
tttAAAGACGCCAACGACATGCTGGATAAATTAAgc > 1:559952/1‑36 (MQ=255)
tttAAAGACGCCAACGACATGCTGGATAAATTAAgc < 1:4847964/36‑1 (MQ=255)
tttAAAGACGCCAACGACATGCTGGATAAATTAAgc < 1:3278088/36‑1 (MQ=255)
tttAAAGACGCCAACGAAATGCTGGATAAATTAAgc > 1:4303989/1‑36 (MQ=255)
ttAAAGACGCCAACGACATGCTGGATAAATTAAgcg > 1:6428434/1‑36 (MQ=255)
ttAAAGACGCCAAAGACATGCTGGATAAATTAAgcg > 1:6912601/1‑36 (MQ=255)
tAAAGACGCCAACGACATGCTGGATAAATTAAgcgc > 1:2844932/1‑36 (MQ=255)
tAAAGACGCCAACGACATGCTGGATAAATTAAgcgc > 1:7456140/1‑36 (MQ=255)
tAAAGACGCCAACGACATGCTGGATAAATTAAgcgc > 1:1501407/1‑36 (MQ=255)
aaaGACGCCAACGACATGCTGGATAAGTTAAGCGcc > 1:999438/1‑36 (MQ=255)
aaaGACGCCAACGACATGCTGGATAAATTAAGCGcc < 1:7819854/36‑1 (MQ=255)
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GAAGTGGTGGGCGTTGAGGCGCAGCGGCTGTTTAAAGACGCCAACGACATGCTGGATAAATTAAGCGCC > REL606/4205657‑4205725
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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