Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,735,429 | 1 | .→G | 2.8% | 0.3 ‑2.1 ‑0.0 | 71 | coding (1046/1458 nt) | ascF | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (23/46): total (25/46) | ||||||||||
Fisher's exact test strand distribution p-value = 1.21e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
TAACCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCAGACG > REL606/2735394‑2735463
|
tacccTGTCGCTGGGCGGTTCATCACTGGCGGT.GGc < 1:4016504/33‑1 (MQ=255)
tAACCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGc < 1:7565284/36‑1 (MQ=255)
tAACCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGc < 1:2476536/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCCCTGGCGGT.GGC.Gt < 1:2269319/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGG.Gt > 1:5959016/1‑36 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.Gt < 1:7078047/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.Gt < 1:6640695/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.Gt < 1:6307208/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.Gt < 1:6224989/36‑1 (MQ=255)
aCCTGTCGCTGGGCGGTGCATCGCTGGCGTT.GGC.Gt < 1:7745481/36‑1 (MQ=21)
tGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGa < 1:1448922/36‑1 (MQ=255)
gTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaa < 1:6194967/36‑1 (MQ=255)
gTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaa < 1:5665751/36‑1 (MQ=255)
gTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaa < 1:5226542/36‑1 (MQ=255)
gcGCTGGTGGGTTCATCACTGGCGGT.GGC.GTGGaaa < 1:4638952/35‑1 (MQ=25)
cGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaaaa < 1:1040080/36‑1 (MQ=255)
cGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaaaa < 1:1205784/36‑1 (MQ=255)
cGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGaaaa < 1:149341/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGTGGGG.GTGGaaac > 1:5199332/1‑35 (MQ=21)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:2195952/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:90594/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:2971022/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:3049433/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:6056211/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:3646695/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAAc < 1:3491215/36‑1 (MQ=255)
gCTGGGCGGTTCATCACTGGCGGG.GGC.GGGGgaaaa > 1:6059195/1‑35 (MQ=21)
cTGGGCGGTTCATCACTGGCGGT.GGG.GTGGgaaaag > 1:5485528/1‑34 (MQ=25)
cTGGGCGGTTCATCACTGGCGGT.GGG.GGGGGAAACg > 1:895604/1‑36 (MQ=25)
tGGGCGGTTCATCACTGGCGGT.GGG.GGGGGAAAcac > 1:404958/1‑34 (MQ=21)
gggCGGTTCATCACTGGCGGT.GGCGGTGGaaaagaa > 1:8442230/1‑33 (MQ=25)
cGGTTCATCACTGGCGGT.GGG.GTGGGAAAAGaaaaa > 1:7134169/1‑36 (MQ=25)
ggTTCATCACTGGCGGT.GGG.GTGGTGAAAGaaaaaa > 1:4611389/1‑35 (MQ=16)
ggTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAc < 1:3410048/36‑1 (MQ=255)
ggTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAc < 1:444645/36‑1 (MQ=255)
ggTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAc < 1:1346977/36‑1 (MQ=255)
ggTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAc < 1:3364981/36‑1 (MQ=255)
ggTTCATCACTGGCGGG.GGCGGGGGAAAACAaaaaa > 1:3085585/1‑36 (MQ=12)
gTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAcc < 1:981825/36‑1 (MQ=255)
gTTCATCACTGGCGGC.GGG.GTGGGGAAAGAAAAAcc > 1:6935813/1‑36 (MQ=12)
ttCATCACTGGCGGT.GGC.GTTGAAAACGAAAAAccc < 1:1799523/36‑1 (MQ=255)
ttCATCACTGGCGGT.GGC.GTGGAAAACGAAAAAccc < 1:7109726/36‑1 (MQ=255)
tcatcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCg < 1:7131570/36‑1 (MQ=255)
tcatcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCg < 1:6539361/36‑1 (MQ=255)
tcatcaCTGGCGGT.GGC.GGGGGTAACGAAAAACCCg > 1:1225679/1‑36 (MQ=25)
catcaCTGGCGGT.GGG.GGGGGAAACGAAAAAaccag > 1:6029049/1‑34 (MQ=16)
catcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCgg < 1:7473732/36‑1 (MQ=255)
atcaCTGGCGGT.GGG.GGGGGAAACGAAAAAACCggg > 1:3299536/1‑35 (MQ=16)
atcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGa < 1:2583282/36‑1 (MQ=255)
atcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGa < 1:3094306/36‑1 (MQ=255)
atcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGa < 1:4618046/36‑1 (MQ=255)
atcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGa < 1:77701/36‑1 (MQ=255)
atcaCTGGCGGT.GGC.GGGGTAAAAGAAAAAGCCGGa > 1:1237295/1‑36 (MQ=19)
tcaCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGaa < 1:2828155/36‑1 (MQ=255)
caCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAAc < 1:185852/36‑1 (MQ=255)
caCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAAc < 1:5128380/36‑1 (MQ=255)
caCTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAAc < 1:541153/36‑1 (MQ=255)
cTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTg > 1:7134056/1‑36 (MQ=255)
cTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTg > 1:1212540/1‑36 (MQ=255)
ggCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTgcg > 1:1359553/1‑36 (MQ=255)
ggCGGG.GTC.GTGGACAACGAAAAACCCGGAACTgcg < 1:1391968/36‑1 (MQ=25)
gCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTgcgc > 1:613485/1‑36 (MQ=255)
gCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTgcgc > 1:5388334/1‑36 (MQ=255)
ggT.GGG.GTGGAAAACGAAAAACCCGGAACTGCGCCa < 1:8218082/36‑1 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa < 1:6790896/36‑1 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa > 1:1263024/1‑36 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa > 1:2732406/1‑36 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa < 1:1652415/36‑1 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa < 1:4265219/36‑1 (MQ=255)
ggT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCa > 1:3877753/1‑36 (MQ=255)
gT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCAg > 1:5796464/1‑36 (MQ=255)
gT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCAg < 1:7726371/36‑1 (MQ=255)
ggC.GTGGAAAACGAAAAACCCGGAACTGCGCCAGAc > 1:3495864/1‑36 (MQ=255)
gC.GTGGAAAACGAAAAACCCGGAACTGCGCCAGACg < 1:5452132/36‑1 (MQ=255)
|
TAACCTGTCGCTGGGCGGTTCATCACTGGCGGT.GGC.GTGGAAAACGAAAAACCCGGAACTGCGCCAGACG > REL606/2735394‑2735463
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|