Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 348,392 | +G | 6.9% | coding (578/1212 nt) | mhpT → | predicted 3‑hydroxyphenylpropionic transporter |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 348,392 | 1 | .→G | 6.9% | 4.3 ‑3.0 ‑0.1 | 29 | coding (578/1212 nt) | mhpT | predicted 3‑hydroxyphenylpropionic transporter |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (5/22): total (7/22) | ||||||||||
Fisher's exact test strand distribution p-value = 5.17e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.79e-01 |
GGTGCCGCTATTAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGCGAAAAACAGTCTGCGCCACCAC > REL606/348357‑348427
|
ggTGCCGCTATTAATGCGCTGGCTGCCGGAGTcggc < 1:5109890/36‑1 (MQ=255)
ggTGCCGCTATTAATGCGCTGGCTGCCGGAGTcggc > 1:417076/1‑36 (MQ=255)
tGCCGCTATTAATGCGCTGGCTGCCGGAGTcggc.gg < 1:3003899/36‑1 (MQ=255)
gCCGCTATTAATGCGCTGGCTGCCGGAGTcggc.ggg > 1:6662604/1‑35 (MQ=255)
gCCGCTATTAATGCGCTGGCTGCCGGAGTCGGC.GGt < 1:2551425/36‑1 (MQ=255)
cacTATTAATGCGCTGGCTGCCGGAGTCGGC.GTttt < 1:3014289/34‑1 (MQ=37)
cGCTATTAATGCGCTGGCTGCCGGAGTCGGC.GGttt < 1:6704677/36‑1 (MQ=255)
cTATTAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTc < 1:6254352/36‑1 (MQ=255)
tATTAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCg < 1:2445522/36‑1 (MQ=255)
aTTAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGc < 1:4852417/36‑1 (MQ=255)
ttAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCt < 1:4745224/36‑1 (MQ=255)
ttAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCt < 1:3036774/36‑1 (MQ=255)
tAATGCGCTGGCTGCCGGCGAAGGC.GGGGTTAGCTg > 1:799742/1‑36 (MQ=9)
tAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTg < 1:4898130/36‑1 (MQ=255)
aaagcgcTGGCTGCCGGATTCGGC.GGTTTTCGCTgg < 1:7780900/33‑1 (MQ=25)
aaTGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTgg < 1:6533203/36‑1 (MQ=255)
aaTGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTgg < 1:5553458/36‑1 (MQ=255)
aTGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGc < 1:923949/36‑1 (MQ=255)
aTGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGc < 1:1001137/36‑1 (MQ=255)
tcgcTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGCGa < 1:6526515/35‑1 (MQ=255)
gcgcTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGCGa < 1:6109705/36‑1 (MQ=255)
gctggctgCCGGAGTCGGC.GGTTTTCGCTGGCGaaa < 1:1718392/36‑1 (MQ=255)
ctggctgCCGGAGTCGGC.GGTTTTTGCTGGGGgaaa > 1:6044077/1‑36 (MQ=25)
ctggctgCCGGAGTCGGC.GGGTTTTTCTTGCGgaaa > 1:3728469/1‑36 (MQ=12)
tggctgCCGGAGTCGGCGGGTTTTTGTTGGGGaaaa > 1:4388842/1‑36 (MQ=12)
tggctgCCGGAGTCGGC.GGTTTTCGCTGGCGaaaaa < 1:2590298/36‑1 (MQ=255)
ggctgCCGGAGTCGGCGGGTTTTGGTTGGGGaaaac > 1:6737800/1‑35 (MQ=12)
tctgCCGGAGTCGGC.GGTTTTCGCTGGCGAAAACCa < 1:4975707/35‑1 (MQ=255)
gctgCCGGAGTCGGC.GGTTTTTTCTGGGGGAAAACa > 1:6418592/1‑36 (MQ=16)
gctgCCGGAGTCGGC.GGATTTCGGTGGCGGAAAACa > 1:7591422/1‑36 (MQ=21)
tgCCGGAGTCGGC.GGTTTTCGCTGGCGAAAAACAGt < 1:4912282/36‑1 (MQ=255)
gCCGGAGTCGGC.GGTTTTCGCTGGCGAAAAACAGTc < 1:2579337/36‑1 (MQ=255)
ggAGTCGGC.GGTTTTCGCTGGCGAAAAACAGTCTgc < 1:5265941/36‑1 (MQ=255)
ggc.ggTTTTCGCTGGCGAAAAACAGTCTGCGccacc < 1:328293/36‑1 (MQ=255)
c.ggTTTTCGCTGGCGAAAAACAGTCTGCGCcaccac > 1:1415381/1‑36 (MQ=255)
|
GGTGCCGCTATTAATGCGCTGGCTGCCGGAGTCGGC.GGTTTTCGCTGGCGAAAAACAGTCTGCGCCACCAC > REL606/348357‑348427
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|