Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,733,647 IS150 (–) +3 bp 98.1% coding (683‑685/1413 nt) pykF → pyruvate kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 588495 =NA (NA)40 (0.750) 32/62 NT 97.6% noncoding (1/1977 nt) IS150 repeat region
?REL606 1733647 = 1 (0.020)coding (683/1413 nt) pykF pyruvate kinase
* ? REL606 = 666130NA (NA)63 (1.080) 33/68 NT 98.4% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1733649 1 (0.020)coding (685/1413 nt) pykF pyruvate kinase

Only 100 of 107 total aligned reads displayed.

CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC  >  REL606/666096‑666165
                                  |                                   
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAt                                    <  1:3796057‑M1/36‑2 (MQ=255)
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAt                                    <  1:5958491‑M1/36‑2 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAtt                                   <  1:4293766/36‑1 (MQ=35)
 gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAtg                                   <  1:5175378‑M1/36‑3 (MQ=255)
   gtTTAACTGTCCACCTTTTTGGGGTCAGTACAtgtt                                 <  1:1195056‑M1/36‑5 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAtgtt                                 >  1:3099488‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAtgtt                                 >  1:5722040‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAtgtt                                 >  1:2237493‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAtgtt                                 >  1:912950‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt                                 >  1:4811070‑M1/1‑32 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt                                 <  1:4863894‑M1/36‑5 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACAggtt                                 <  1:2534997‑M1/36‑5 (MQ=255)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACATTTc                                 >  1:6714185/1‑36 (MQ=40)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACATTTc                                 >  1:1378210/1‑36 (MQ=40)
   gtTTAACTGTCCAACTATATGGGGTCAGTACATTTc                                 <  1:1772936/36‑1 (MQ=14)
   gtTTAACTGTCCAACCTTTTGGGGTCAGTACAtgtt                                 <  1:7415064‑M1/36‑5 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACAtgttga                               >  1:4499705‑M1/1‑30 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACAtgttga                               >  1:6819818‑M1/1‑30 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACAtgttga                               <  1:1397773‑M1/36‑7 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACAggttgc                               <  1:2563011‑M1/36‑7 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACATTTCAg                               <  1:1875767/36‑1 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACATTTCAg                               >  1:7840968/1‑36 (MQ=255)
     ttAACTGTCCAACTTTTTGGGGTCAGTACATTTCAg                               <  1:5915307/36‑1 (MQ=255)
      tAACTGTCCAACTTTTTGGGGTCAGTACAtgttgag                              <  1:1024346‑M1/36‑8 (MQ=255)
      tAACTGTCCAACTTTTTGGGGTCAGTACAtgttgag                              <  1:1498665‑M1/36‑8 (MQ=255)
      tAACTGTCCAACTTTTTGGGGTCAGTACATTTCAgg                              >  1:6096866/1‑36 (MQ=255)
       aaCTGTCCAACTTTTTGGGGTCAGTACAtgttgagg                             >  1:5863688‑M1/1‑28 (MQ=255)
       aaCTGTCCAACTTTTTGGGGTCAGTACATTTCAggg                             <  1:266551/36‑1 (MQ=255)
        aCTGTCCAACTTTTTGGGGTCAGTACAtgttgaggc                            >  1:4369694‑M1/1‑27 (MQ=255)
        aCTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGc                            >  1:5943039/1‑36 (MQ=255)
         cTGTCCAACTTTTTGGGGTCAGTACAtgttgaggcc                           >  1:5595487‑M1/1‑26 (MQ=255)
         cTGTCCAACTTTTTGGGGTCAGTACAtgttgaggcc                           <  1:618903‑M1/36‑11 (MQ=255)
         cTGTCCAACTTTTTGGGGTCAGTACAtgttgaggcc                           <  1:7355592‑M1/36‑11 (MQ=255)
          tGTCCAACTTTTTGGGGTCAGTACAtgttgaggcct                          <  1:5791549‑M1/36‑12 (MQ=255)
          tGTCCAACTTTTTGGGGTCAGTACAtgttgaggcct                          >  1:6160010‑M1/1‑25 (MQ=255)
          tGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCtt                          <  1:7567691/36‑1 (MQ=255)
           gTCCAACTTTTTGGGGTCAGTACAtgttgaggcctt                         <  1:7013053‑M1/36‑13 (MQ=255)
           gTCCAACTTTTTGGGGTCAGTACAtgttgaggcctt                         <  1:363499‑M1/36‑13 (MQ=255)
           gTCCAACTTTTTGGGGTCAGTACATTTCAGGGCttt                         >  1:914518/1‑36 (MQ=255)
           gTCCAACTTTTTGGGGTCAGTACATTTCAGGGCttt                         <  1:145919/36‑1 (MQ=255)
            tCCAACTTTTTGGGGTCAGTACATTTCAGGGCtttt                        <  1:4285039/36‑1 (MQ=255)
             ccAACTTTTTGGGGTCAGTACAtgttgaggccttcc                       <  1:5638919‑M1/36‑15 (MQ=255)
             ccAACTTTTTGGGGTCAGTACAtgttgaggccttcc                       <  1:1767742‑M1/36‑15 (MQ=255)
             ccAACTTTTTGGGGTCAGTACATTTCAGGGCttttt                       <  1:2453644/36‑1 (MQ=255)
              cAACTTTTTGGGGTCAGTACAtgttgaggccttcct                      <  1:1740802‑M1/36‑16 (MQ=255)
              cAACTTTTTGGGGTCAGTACAtgttgaggccttcct                      <  1:676429‑M1/36‑16 (MQ=255)
               aaCTTTTTGGGGTCAGTACAtgttgaggccttcctg                     <  1:124213‑M1/36‑17 (MQ=255)
               aaCTTTTTGGGGTCAGTACAtgttgaggccttcctg                     <  1:2208025‑M1/36‑17 (MQ=255)
               aaCTTTTTGGGGTCAGTACAtgttgaggccttcctg                     >  1:3793884‑M1/1‑20 (MQ=255)
               aaCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCa                     <  1:7609668/36‑1 (MQ=255)
               aaCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCa                     >  1:3002597/1‑36 (MQ=255)
                aCTTTTTGGGGTCAGTACAtgttgaggccttcctgg                    >  1:3465141‑M1/1‑19 (MQ=255)
                aCTTTTTGGGGTCAGTACAtgttgaggccttcctgg                    >  1:5067228‑M1/1‑19 (MQ=255)
                aCTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCAc                    <  1:677544/36‑1 (MQ=255)
                 cTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACg                   <  1:5913542/36‑1 (MQ=255)
                  tttttGGTGTCGGTACATTTCAGGGCTTTTTCACGa                  <  1:1879291/36‑1 (MQ=37)
                  tttttGGGGTCAGTACAtgttgaggccttcctggtt                  <  1:377793‑M1/36‑20 (MQ=255)
                   ttttGGGGTCAGTACAtgttgaggccttcctggttt                 >  1:5081604‑M1/1‑16 (MQ=255)
                   ttttGGGGTCAGTACAtgttgaggccttcctggttt                 >  1:3335562‑M1/1‑16 (MQ=255)
                    tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAGc                >  1:6568935/1‑36 (MQ=255)
                    tttGGGGTCAGTACATTTCAGGGCTTTTTCACGAGc                >  1:3507300/1‑36 (MQ=255)
                     ttGGGGTCAGTGCAtgttgaggccttcctggttttc               <  1:1149210‑M1/36‑23 (MQ=255)
                     ttGGGGTCAGTACAtgttgaggccttcctggttttc               <  1:5025707‑M1/36‑23 (MQ=255)
                     ttGGGGTCAGTACAtgttgaggccttcctggttttc               >  1:6836706‑M1/1‑14 (MQ=255)
                     ttGGGGTCAGTACAtgttgaggccttcctggttttc               >  1:4310454‑M1/1‑14 (MQ=255)
                      tGGGGTCAGTACAtgttgaggccttcctggttttcg              <  1:7154245‑M1/36‑24 (MQ=255)
                      tGGGGTCAGTACAtgttgaggccttcctggttttcg              <  1:1713749‑M1/36‑24 (MQ=255)
                      tGGGGTCAGTACAtgttgaggccttcctggttttcg              <  1:1480102‑M1/36‑24 (MQ=255)
                      tGGGGTCAGTACAtgttgaggccttcctggttttcg              <  1:7462026‑M1/36‑24 (MQ=255)
                       ggggTCAGTACAtgttgaggccttcctggttttcga             >  1:4552755‑M1/1‑12 (MQ=255)
                       ggggTCAGTACATTTCAGGGCTTTTTCACGAGCCgg             >  1:3575614/1‑36 (MQ=255)
                       ggggTCAGTACATTTCAGGGCTTTTTCACGAGCCgg             <  1:6334882/36‑1 (MQ=255)
                       ggggTCAGTACATTTAAGGGCTTTTTCCCGAGCCgg             >  1:2569030/1‑36 (MQ=37)
                        gggTCAGTACAtgttgaggccttcctggttttcgat            >  1:598156‑M1/1‑11 (MQ=255)
                        gggTCAGTACAtgttgaggccttcctggttttcgat            >  1:848609‑M1/1‑11 (MQ=255)
                        gggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgc            <  1:6816247/36‑1 (MQ=255)
                        gggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgc            <  1:3113027/36‑1 (MQ=255)
                         ggTCAGTACATTTCAGGGCTTTTTCACGCGCCGgcg           >  1:6842087/1‑36 (MQ=255)
                         ggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcg           >  1:769036/1‑36 (MQ=255)
                         ggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcg           <  1:3698138/36‑1 (MQ=255)
                         ggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcg           <  1:564643/36‑1 (MQ=255)
                         ggTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcg           >  1:3030547/1‑36 (MQ=255)
                          gTCAGTACAtgttgaggccttcctggttttcgattt          <  1:886220‑M1/36‑28 (MQ=255)
                          gTCAGTACATTTCAGGGCTTTTTCACGAGCCGgcgc          <  1:110630/36‑1 (MQ=255)
                           tCAGTACAtgttgaggccttcctggttttcgatttt         <  1:214213‑M1/36‑29 (MQ=255)
                            cAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCtt        <  1:4202942/36‑1 (MQ=255)
                             aGTACAtgttgaggccttcctggttttcgattttgg       <  1:7081885‑M1/36‑31 (MQ=255)
                              gTACAtgttgaggccttcctggttttcgattttgga      <  1:2111451‑M1/36‑32 (MQ=255)
                              gTACAtgttgaggccttcctggttttcgattttgga      <  1:7767779‑M1/36‑32 (MQ=255)
                              gTACAtgttgaggccttcctggttttcgattttgga      >  1:4231114‑M1/1‑5 (MQ=255)
                              gTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTa      >  1:7816842/1‑36 (MQ=255)
                               tACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTAt     >  1:7622672/1‑36 (MQ=255)
                                aCAtgttgaggccttcctggttttcgattttggaga    >  1:7193711‑M1/1‑3 (MQ=255)
                                aCAtgttgaggccttcctggttttcgattttggaga    >  1:1442553‑M1/1‑3 (MQ=255)
                                aCAtgttgaggccttcctggttttcgattttggaga    <  1:2265101‑M1/36‑34 (MQ=255)
                                aCAtgttgaggccttcctggttttcgattttggaga    >  1:4958776‑M1/1‑3 (MQ=255)
                                aCAtgttgaggccttcctggttttcgattttggaga    >  1:3962631‑M1/1‑3 (MQ=255)
                                 cATTGCAGGGCTTTTTCACGAGCCGGCGCTTTATcg   <  1:2914152/36‑1 (MQ=255)
                                  atgttgaggccttcctggttttcgattttggagatg  >  1:6862688‑M1/1‑1 (MQ=255)
                                  atgttgaggccttcctggttttcgattttggagatg  >  1:2248579‑M1/1‑1 (MQ=255)
                                  |                                   
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGC  >  REL606/666096‑666165

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG