Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,224 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546959–547702 555923–555878 8177–8965 8 [7] [0] 66 [insB‑6]–[ECB_00513] [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 555924 =0 (0.000)41 (1.030) 27/62 NT 100% coding (1209/2346 nt) ECB_00513 conserved hypothetical protein
?REL606 = 2035093 NA (NA)noncoding (1/768 nt) IS1 repeat region

GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959
                                   |                                   
atcatacactaaatcagtaagttggcagcatcgccc                                     >  1:489247‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatccccc                                     >  1:834211‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:3298774‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:5242265‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3632515‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:2691061‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:3808837‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:2235414‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:2173823‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:5795462‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:5898913‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:1752338‑M1/1‑1 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     >  1:1307707‑M1/36‑36 (MQ=255)
atcatacactaaatcagtaagttggcagcatcaccc                                     <  1:505201‑M1/1‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:3396851‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:3906930‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:2470487‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:249326‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    <  1:3058739‑M1/2‑1 (MQ=255)
 tcatacactaaatcagtaagttggcagcatcaccCa                                    >  1:262516‑M1/35‑36 (MQ=255)
 tcatacactaaatcagcaagttggcagcatcaccCa                                    <  1:5240436‑M1/2‑1 (MQ=255)
 tcataaactaaatcagtaagttggcagcatcaccCa                                    <  1:5200930‑M1/2‑1 (MQ=255)
   atacactaaatcagtaagttggcagcatcaccCaaa                                  <  1:5365345‑M1/4‑1 (MQ=255)
     acactaaatcagtaagttggcagcatcaccCAAAcg                                <  1:5042855‑M1/6‑1 (MQ=255)
     acactaaatcagtaagttggcagcatcaccCAAAcg                                <  1:3985948‑M1/6‑1 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               >  1:5101822‑M1/30‑36 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               >  1:5208358‑M1/30‑36 (MQ=255)
      cactaaatcagtaagttggcagcatcaccCAAAcgc                               <  1:3139012‑M1/7‑1 (MQ=255)
       actaaatcagtaagttggcagcatcaccCAAAcgcg                              <  1:3627279‑M1/8‑1 (MQ=255)
       actaaatcagtaagatggcagcatcaccCAAAcgcg                              <  1:2454518‑M1/8‑1 (MQ=255)
          aaatcagtaagttgtcagcatcaccCAAACGCGCAt                           >  1:5661330‑M1/26‑36 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          <  1:785966‑M1/12‑1 (MQ=255)
           aatcagtaagttggcagcatcaccCAAACGCGCATc                          <  1:3994867‑M1/12‑1 (MQ=255)
              cagtaagttggcagcatcaccCAAACGCGCATCAgg                       >  1:4570926‑M1/22‑36 (MQ=255)
              cagtaagttggcagcatcaccCAAACGCGCATCAgg                       >  1:1115020‑M1/22‑36 (MQ=255)
               agtaagtttgcagcatcaccCAAACGCGCATCAGGt                      >  1:5567835‑M1/21‑36 (MQ=255)
               agtaagttggcagcatcaccCAAACGCGCATCAGGt                      <  1:852418‑M1/16‑1 (MQ=255)
               aggaagttggcagcatcaccCAAACGCGCATCAGGt                      >  1:1028598‑M1/21‑36 (MQ=255)
                 taagttggcagcatctccCAAACGCGCATCAGGTGc                    >  1:3434064‑M1/19‑36 (MQ=255)
                 taagttggcagcatcaccCAAACGCGCATCAGGTGc                    >  1:3912990‑M1/19‑36 (MQ=255)
                   agttggcagcatcaccCAAACGCGCATCAGGTGCaa                  <  1:243389‑M1/20‑1 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGCAaca                <  1:4667312‑M1/22‑1 (MQ=255)
                     ttggcagcatcaccCAAACGCGCATCAGGTGCAaca                >  1:919504‑M1/15‑36 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               <  1:5240058‑M1/23‑1 (MQ=255)
                      tggcagcatcaccCAAACGCGCATCAGGTGCAacat               >  1:4839836‑M1/14‑36 (MQ=255)
                       ggcagcatcaccCAAACGCGCATCAGGTGCAacata              <  1:1326017‑M1/24‑1 (MQ=255)
                         cagcatcaccCAAACGCGCATCAGGTGCAacataca            >  1:3581696‑M1/11‑36 (MQ=255)
                         cagcatcaccCAAACGCGCATCAGGTGCAacataca            >  1:817951‑M1/11‑36 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGTGCAACATACAtt          >  1:1009596‑M1/9‑36 (MQ=255)
                           gcatcaccCAAACGCGCATCAGGGGCAACATACAtt          >  1:2921671‑M1/9‑36 (MQ=255)
                            catcaccCAAACGCGCATCAGGTGCAACATACATta         >  1:191197‑M1/8‑36 (MQ=255)
                             atcaccCAAACGCGCATCAGGTGCAACATACATtaa        >  1:4013049‑M1/7‑36 (MQ=255)
                             atcaccCAAACGCGCATCAGGTGCAACATACATtaa        >  1:926487‑M1/7‑36 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       <  1:3058747‑M1/31‑1 (MQ=255)
                              tcaccCAAACGCGCATCAGGTGCAACATACATtaat       <  1:2538789‑M1/31‑1 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      <  1:473315‑M1/32‑1 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:4008739‑M1/5‑36 (MQ=255)
                               caccCAAACGCGCATCAGGTGCAACATACATtaata      >  1:813466‑M1/5‑36 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     <  1:726795‑M1/33‑1 (MQ=255)
                                accCAAACGCGCATCAGGTGCAACATACATtaataa     <  1:3155749‑M1/33‑1 (MQ=255)
                                accCAAACGCGCATCAGGTGAAACATACATtaataa     <  1:1385163‑M1/33‑1 (MQ=255)
                                 ccCAAACGCGCATCAGGTGCAACATACATTAATaaa    >  1:94290‑M1/3‑36 (MQ=255)
                                  cCAAACGCGCATCAGGTGCAACATACATTAATAAAt   <  1:2102470‑M1/35‑1 (MQ=255)
                                  cCAAACGCGAATCAGGTGCAACATACATTAATAAAt   >  1:1925371‑M1/2‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:1619778‑M1/1‑36 (MQ=255)
                                   CAAACGCGCATCAGGTGCAACATACATTAATAAATc  >  1:1448183‑M1/1‑36 (MQ=255)
                                   |                                   
GTTATTAAAATGCCATCCGATAAGGTTGTTAGCTTCAAACGCGCATCAGGTGCAACATACATTAATAAATC  >  REL606/555889‑555959

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG