Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,495,906 | A→T | 20.4% | L127Q (CTA→CAA) | eutP ← | conserved protein with nucleoside triphosphate hydrolase domain |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,495,906 | 0 | A→T | 20.4% | 7.3 ‑3.5 0.0 | 32 | 380 | eutP | conserved protein with nucleoside triphosphate hydrolase domain |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (13/12): total (20/12) | ||||||||||
Fisher's exact test strand distribution p-value = 2.88e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCAGTTGCTGCACGCTTTGCGGGTCGTGGCTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGTCTCAAGC > REL606/2495871‑2495941
|
ccaGTTGCTGCACGCTTTGCGGGTCGTGGCTGTTTa < 1:5089411/36‑1 (MQ=255)
ccaGTTGCTGCACGCTTTGCGGGTCGTGGCTGTTTa < 1:1833502/36‑1 (MQ=255)
gTTGCTGCACGCTTTGCGGGTCGTGGCTGGTTTGCt > 1:2693898/1‑36 (MQ=38)
ttGCTGCACGCTTTGCGGGTCGTGGCTGTTTAGCTc < 1:3916639/36‑1 (MQ=255)
ctgcACGCTTTGCGGGTCGTGGCTGTTTTTCTCGaa > 1:4136267/1‑36 (MQ=37)
ctgcACGCTTTGCGGGTCGTGGCTGTTTAGCTCGaa < 1:5356613/36‑1 (MQ=255)
gcACGCTTTGCGGGTCGTGGCTGTTTTGCCCGgaaa > 1:187079/1‑36 (MQ=25)
aCGCTTTGCGGGTCGTGGCTGTTTTGTTCGAAAATc > 1:5023997/1‑36 (MQ=37)
aCGCTTTGCGGGTCGTGGCTGTTTTGATCGAAAAtt > 1:349575/1‑35 (MQ=37)
aCGCTTTGCGGGTCGTGGCTGTTTAGCCCGGAAAta > 1:5619154/1‑35 (MQ=37)
cGCTTTGCGGGTGGAGGCTGTTTTGCTTGAAAAACg > 1:1303975/1‑36 (MQ=16)
cGCTTTGCGGGTCGTGGCTGTTTTGGTCGAAAAACg > 1:5254073/1‑36 (MQ=21)
cGCTTTGCGGGTCGTGGCTGTTTAGCTCGAAAATCg > 1:5680049/1‑36 (MQ=255)
gCTTTGCGGGTCGTGGCTGTTTAGGTCGAAAATCgg > 1:2923110/1‑36 (MQ=255)
tttGCGGGTCGTGGCTGTTTAGCTCGAAAATCGGct < 1:587816/36‑1 (MQ=255)
tttGCGGGTCGTGGCTGTTTAGCTCGAAAATCGGct < 1:916367/36‑1 (MQ=255)
tGCGGGTCGTGGCTGTTTAGCTCGAAAATCGGctct > 1:1580367/1‑36 (MQ=255)
cGGGTCGTGGCTGTTTAGCTCGAAAATCGGCTCTTc < 1:2304721/36‑1 (MQ=255)
cGGGTCGTGGCTGTTTAGCTCGAAAATCGGCTCTTc < 1:323207/36‑1 (MQ=255)
ggTCGTGGCTGTTTAGCTCGAAAATCGGCTCTTCGa < 1:869997/36‑1 (MQ=255)
ggTCGTGGCTGTTTAGCTCGAAAAACGGCTCtttgg > 1:5040290/1‑33 (MQ=37)
cGTGGCTGTTTAGCTCGAAAATCGGCTCTTCGAAAc < 1:1019504/36‑1 (MQ=255)
ggCTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCg > 1:2837568/1‑36 (MQ=255)
ggCTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCg > 1:1017653/1‑36 (MQ=255)
ggCTGTTTAGCGCGAAAATCGGCTCTTCGAAACCCg > 1:5500469/1‑36 (MQ=255)
gCTGTTTAGCTCGAAAATCGGCTCTTTGAAACCCGt > 1:4784205/1‑36 (MQ=255)
gCTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGt > 1:661457/1‑36 (MQ=255)
cTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGtc > 1:3346095/1‑36 (MQ=255)
tGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGtct > 1:5890396/1‑36 (MQ=255)
tGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGtct < 1:1584093/36‑1 (MQ=255)
gTTTAGCTCGAAAATCGGCTCTTCGAAACCCGtctc < 1:3220182/36‑1 (MQ=255)
tttAGCTCGAAAATCGGCTCTTCGAAACCCGTCTCa < 1:2929261/36‑1 (MQ=255)
tttAGCTCGAAAATCGGCTCTTCGAAACCCGTCTCa < 1:2679506/36‑1 (MQ=255)
tttAGCTCGAAAATCGGCTCTTCGAAACCCGTCTCa > 1:253766/1‑36 (MQ=255)
ttaaGCTCGAAAATCGGCTCTTCGAAACCCGTCTCa < 1:3071196/33‑1 (MQ=255)
aGCTCGAAAATCGGCTCTTCGAAACCCGTCTCAAGc < 1:440480/36‑1 (MQ=255)
aGCTCGAAAATCGGCTCTTCGAAACCCGTCTCAAGc < 1:2432601/36‑1 (MQ=255)
aGCTCGAAAATCGGCTCTTCGAAACCCGTCTCAAGc < 1:1860328/36‑1 (MQ=255)
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CCAGTTGCTGCACGCTTTGCGGGTCGTGGCTGTTTAGCTCGAAAATCGGCTCTTCGAAACCCGTCTCAAGC > REL606/2495871‑2495941
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
|