Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 47 [4] [2] 31 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)29 (0.530) 21/64 NT 93.5% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 2 (0.030)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  >  REL606/3901931‑3901963
                                                                      
   GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG                                 <  1:3124728/36‑1 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                >  1:6676501/1‑36 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                >  1:4333004/1‑36 (MQ=1)
        TAACTGTCCGACTTTTTGGGGTCAGTACAGGTTGCC                            <  1:2257480/36‑1 (MQ=255)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                           <  1:6885048/36‑1 (MQ=38)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                           <  1:4300724/36‑1 (MQ=38)
          ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA                          >  1:3241439/1‑36 (MQ=38)
           CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG                         <  1:1501402/36‑1 (MQ=38)
            TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG                        >  1:5260205/1‑36 (MQ=38)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                       <  1:7182572/36‑1 (MQ=38)
                 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC                   <  1:3944526/36‑1 (MQ=38)
                 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC                   >  1:2295320/1‑36 (MQ=38)
                 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGCGACC                   >  1:5208128/1‑36 (MQ=255)
                 AACTTTTTCGGGTCAGTACAGGTTGCCCAGGTGACC                   >  1:2802335/1‑36 (MQ=255)
                   CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG                 >  1:1798994/1‑36 (MQ=38)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                <  1:2402067/36‑1 (MQ=40)
                      TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC              <  1:5389028/36‑1 (MQ=255)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC           <  1:5473568/36‑1 (MQ=255)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC           <  1:5727704/36‑1 (MQ=255)
                           GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC         <  1:7057901/36‑1 (MQ=255)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC        <  1:2322056/36‑1 (MQ=255)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC        >  1:7214063/1‑36 (MQ=255)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC        <  1:1546030/36‑1 (MQ=255)
                             TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA       <  1:3049105/36‑1 (MQ=255)
                              CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA      >  1:633399/1‑36 (MQ=255)
                              CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA      <  1:5746792/36‑1 (MQ=255)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  <  1:94320/36‑1 (MQ=255)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  <  1:2415721/36‑1 (MQ=255)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  <  1:2402568/36‑1 (MQ=255)
                                                                      
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC  >  REL606/3901931‑3901963

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG