Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 305,640 | G→T | 18.6% | L207F (TTG→TTT) | yahA → | predicted DNA‑binding transcriptional regulator |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 305,640 | 0 | G→T | 18.6% | 4.8 ‑3.2 0.0 | 24 | 621 | yahA | predicted DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (8/11): total (13/11) | ||||||||||
Fisher's exact test strand distribution p-value = 4.11e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CATATTGGCATCAACGTCTCGGCGGGTTGTTTTTTGGCAGCGGGATTTGAAAAAGAGTGTCTGAACCTGGT > REL606/305605‑305675
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cATATTGGCATCAACGTCTCGGCGGGTTGTTTTTTg < 1:1302881/36‑1 (MQ=255)
atcttGGCATCAACGTCTCGGCGGGTTGTTTTTTgg < 1:3208969/33‑1 (MQ=255)
atatTGGCATCAACGGCTCGGCGGGTTGTTTTTTgt > 1:1030526/1‑35 (MQ=255)
tGGCATCAACGTCTCGGCGGGTTGTTTTTTGGCAGc < 1:3097441/36‑1 (MQ=255)
tGGCATCAACGTCTCGGCGGGTTGTTTTTTGGCAGc < 1:4760583/36‑1 (MQ=255)
cATCAACGTCTCGGCGGGTTGTTTTTTGGCAGCggg < 1:5582976/36‑1 (MQ=255)
aTCAACGTCTCGGCGGGTTGTTTTTTTGGAGGgggg > 1:2712913/1‑35 (MQ=25)
aTCAACGTCTCGGCGGGTTGTTTTTTTGGAGCgggg > 1:4940801/1‑35 (MQ=37)
cAACGTCTCGGCGGGTTGTTTTTTGGCAGCGGGAtt < 1:3171435/36‑1 (MQ=255)
aaCGTCTCGGCGGGTTGTTTTTTGGCAGCGGGAttt < 1:5697694/36‑1 (MQ=255)
aaCGTCTCGGCGGGGTGTTTTTTTGGAGCGGGTttt > 1:4056265/1‑36 (MQ=19)
ggctcGGCGGGTTGTTTTCTGGCAGCGTGATTTGaa < 1:5446196/34‑1 (MQ=25)
gTCTCGGCGGGTTTTTTTTTTGCAGGGGGGttttta > 1:3856804/1‑33 (MQ=12)
tctcGGCGGGTTGTTTTTTGGCAGCGGGATTTGaaa < 1:244180/36‑1 (MQ=255)
tctcGGCGGGTTGTTTTTTGGCAGCGGGATTTGaaa < 1:3144024/36‑1 (MQ=255)
tctcGGCGGGTTGGTTTTTTGCAGCGGGATTTGaaa > 1:105054/1‑36 (MQ=37)
cggGTTGTTTTTTGGCAGCGGGATTTGAAAAAGAgt < 1:4126488/36‑1 (MQ=255)
cggGTTGTTTTTTGGCAGCGGGATTTGAAAAAGAgt > 1:3904038/1‑36 (MQ=255)
gggTTGTTTTTTGGCAGCGGGATTTGAAAAagagcg > 1:57222/1‑34 (MQ=255)
gggTTGTTTTTTGGCAGCGGGATTTGAAAAAGAgtg > 1:4276297/1‑36 (MQ=255)
gggTTGTTTTTTGGCAGCGGGATTTGAAAAAGAgtg > 1:5477640/1‑36 (MQ=255)
tgttTTTTGGCAGCGGGATTTGAAAAAGAGTGTCTg < 1:4204898/36‑1 (MQ=255)
ttttttGGCAGCGGGATTTGAAAAAGAGTGTCTGaa > 1:1829072/1‑36 (MQ=255)
ttttGGCAGCGGGATTTGAAAAAGAGTGTCTGAAcc < 1:851016/36‑1 (MQ=255)
ttGGCAGCGGGATTTGAAAAAGAGTGTCTGAACCTg > 1:815479/1‑36 (MQ=255)
ttGGCAGCGGGATTTGAAAAAGAGTGTCTGAACCTg > 1:984729/1‑36 (MQ=255)
tGGCAGCGGGATTTGAAAAAGAGTGTCTGAACCTgg > 1:4013770/1‑36 (MQ=255)
ggCAGCGGGATTTGAAAAAGAGTGTCTGAACCTGGt < 1:4992471/36‑1 (MQ=255)
ggCAGCGGGATTTGAAAAAGAGTGTCTGAACCTGGt > 1:5052943/1‑36 (MQ=255)
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CATATTGGCATCAACGTCTCGGCGGGTTGTTTTTTGGCAGCGGGATTTGAAAAAGAGTGTCTGAACCTGGT > REL606/305605‑305675
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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