Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,666,286 | T→C | 18.8% | D284D (GAT→GAC) | xylR → | DNA‑binding transcriptional activator, xylose‑binding |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,666,286 | 0 | T→C | 18.8% | 3.4 ‑4.4 ‑0.0 | 35 | 852 | xylR | DNA‑binding transcriptional activator, xylose‑binding |
Reads supporting (aligned to +/- strand): new base (1/6): ref base (19/8): total (21/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.18e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.85e-01 |
GAACGGCGCTCAACAGATTATCGCTCGCTGACCGATCCCGCCGTTATTCAGGCCATGCATTACATTCGT > REL606/3666251‑3666319
|
gAACGGCGCTCAACAGATTATCGCTCGCTGGCCGAt > 1:3758424/1‑36 (MQ=255)
gAACGGCGCTCAACAGATTATCGCTCGCTGAACGAt > 1:1505694/1‑36 (MQ=255)
aaCGGCGCTCAACAGATTATCGCTCGCTGACCGATc > 1:348873/1‑36 (MQ=255)
aCGGCGCTCAACAGATTATCGCTCGCTGACCGATcc < 1:1386488/36‑1 (MQ=255)
cgcTCAACAGATTATCGCTCGCTGACCGATCccgcc < 1:779934/36‑1 (MQ=255)
cgcTCAACAGATTATCGCTCGCTGACCGATCccgcc > 1:4975724/1‑36 (MQ=255)
cgcTCAACAGATTATCGCTCGCTGACCGATCccgcc < 1:2185780/36‑1 (MQ=255)
gcTCAACAGATTATCGCTCGCTTATCGATCccgccg > 1:2976073/1‑36 (MQ=37)
gcTCAACAGATTATCGCTCGCTGACCGATCccgccg < 1:2106368/36‑1 (MQ=255)
gcTCAACAGATTATCGCTCGCTCAACGACTccgccg > 1:4274957/1‑36 (MQ=16)
caaaaCAAATTACCGCTCGCTGCCCGATCCCGCCGt < 1:2130010/33‑1 (MQ=16)
tCAACAGATTATCGCTCGCTGACCGATCCCGCCGtt > 1:2858217/1‑36 (MQ=255)
tCAACAGATTATCGCTCGCTGACCGATCCCGCCGtt > 1:2867781/1‑36 (MQ=255)
tCAACAGATTATCGCTCACTGACCGATCccgccgat > 1:5071427/1‑34 (MQ=38)
aaCAGATTATCGCTCGCTGACCGATCCCGCCGTTAt > 1:2403074/1‑36 (MQ=255)
aaCAGATTATCGCTCGCTGACCGATCCCGCCGTTAt > 1:3447255/1‑36 (MQ=255)
aaCAAATTATCCCTCGTTGCCCCTTCCCGCCGTTAt < 1:928879/36‑1 (MQ=2)
aaaGATTCCCGCTCGCTGACCACTCCCGCCGTTAtt < 1:2921684/34‑1 (MQ=16)
aCAGATTATCGCTCGCGGACCGAGCTCTCCGCTAtg > 1:2982188/1‑35 (MQ=12)
cAGATTATCGCTCGCTGACCGATCCCGCCGTTATTc > 1:1066100/1‑36 (MQ=255)
aGATTATCGCTCGCTGACCGATCCCGCCGTTATTCa > 1:5501304/1‑36 (MQ=255)
gATTATCGCTCGCTGACCGATCCCGCCGTTATTCAg > 1:2430352/1‑36 (MQ=255)
taccgctccctGACCGACCCCGCCGTTATTCAGGcc < 1:257247/33‑1 (MQ=25)
ccgctcgctAACCCACCCCGCCGTTATTCAGGCCAt < 1:1332713/35‑1 (MQ=21)
gctcgctGACCGATCCCGCCGTTATTCAGGCCATGc > 1:3296975/1‑36 (MQ=255)
ccgctGACAGACCCCGCCGTTATTCAGGCCATGCAt < 1:5838486/35‑1 (MQ=37)
gctGCCCGACCCCGCCGTTATTCAGGCCATGCATTa < 1:2732214/36‑1 (MQ=37)
gctGACCGATCCCGCCGTTATTCAGGCCATGCCTTa > 1:416489/1‑36 (MQ=255)
gctGACCGATCCCGCCGTTATTCAGGCCATGCATTa > 1:3280467/1‑36 (MQ=255)
gctGACCGATCCCGCCGTTATTCAGGCCATGCATTa > 1:4951628/1‑36 (MQ=255)
gctGACCGATCCCGCCGTTATTCAGGCCATGCATTa < 1:531196/36‑1 (MQ=255)
gctGACCGATCCCGCCCTTATTCAGGCCATGCATTa > 1:949689/1‑36 (MQ=255)
gctGACCGATACAGCCGTTGTTTAGGCCATGCAGTa > 1:2053510/1‑36 (MQ=16)
tGACCGATCCCGCCGTTATTCAGGCCATGCATTACa > 1:5530380/1‑36 (MQ=255)
cccccGACCCCGCCGTTATTCAGGCCATGCATTACa < 1:1903796/33‑1 (MQ=37)
gACCGACCCCGCCGTTATTCAGGCCATGCATTACAt < 1:2903746/36‑1 (MQ=255)
gATCCCGCCGTTATTCAGGCCATGCATTACATTCGt > 1:5652170/1‑36 (MQ=255)
|
GAACGGCGCTCAACAGATTATCGCTCGCTGACCGATCCCGCCGTTATTCAGGCCATGCATTACATTCGT > REL606/3666251‑3666319
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 5 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 37 ≤
ATCG
|