Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,574,191 | T→C | 15.1% | intergenic (+33/+785) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,574,191 | 0 | T→C | 15.1% | 2.2 ‑1.6 ‑0.8 | 20 | intergenic (+33/+785) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (7/10): total (10/10) | ||||||||||
Fisher's exact test strand distribution p-value = 2.11e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.71e-01 |
TAAGTATTTTACAGGCAATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTT > REL606/2574156‑2574226
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tAAGTATTTTACAGTCAATAAAAAACCGCCGAAttt > 1:5498155/1‑36 (MQ=255)
gTATTTTACAGGCAATAAAAAACCGCCGAATTTGGc > 1:7888369/1‑36 (MQ=255)
gTATTTTACAGGCAATAAAAAACCGCCGAATTTGGc > 1:2554472/1‑36 (MQ=255)
tATTTTAAAGGCAAAAAAAAACCGCCGAATTTGGCg < 1:7864226/36‑1 (MQ=25)
tACAGGCAATAAAAAACCGCCGAATTTGGCGGtttt > 1:200515/1‑36 (MQ=255)
aaaGGCAATAAAAAACCGCCGAATTTGGCGGttttt > 1:3231099/3‑36 (MQ=255)
aGGCAATAAAAAACCGCCGAATTTGGCGGttttttt > 1:365500/1‑35 (MQ=255)
agCAATAAAAAACCGCCAAATTCGGCGGgtgttttt > 1:5210470/2‑34 (MQ=18)
aaaaaaaaaCCGCCGAATTTGGCGGTTTTTTATTGc < 1:1390388/33‑1 (MQ=255)
aaTAAAAAACCGCCGAATTTGGCGGTTTTTTTtttt > 1:5195756/1‑34 (MQ=17)
aaTAAAAAACCGCCAAATTCGGCGGTTTTTTTtttt > 1:2333750/1‑34 (MQ=17)
aaTAAAAAACAGCCAAATTCGGCGGTTTTTTTttat > 1:4369436/1‑34 (MQ=17)
aaaaaacCCGCCGAATTTGGCGGTTTTTTATTGCTa < 1:7322680/35‑1 (MQ=255)
aaatCCGCCGAATTTGGCGGTTTTTTATTGCTAGTc < 1:6068504/36‑1 (MQ=255)
aaacCCGCCGAATTTGGCGGTTTTTTATTGCTAGTc < 1:6477024/36‑1 (MQ=255)
aaaaCCGCCGAATTTGGCGGCGTTTTTTTTTTAGtg > 1:6110003/1‑35 (MQ=12)
cccgccgAATTTGGCGGTTTTTTATTGCTAGTTTgg < 1:1411216/35‑1 (MQ=255)
gccgAATTTGGCGGTTTTTTATTGCTAGTCTGGTTc < 1:6634153/36‑1 (MQ=255)
cgAATATGGCGGTTTTTTATTGCTAGTCTGGTTcgc < 1:7285214/36‑1 (MQ=255)
aaTTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCgg < 1:5592711/36‑1 (MQ=255)
aTTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGc < 1:7124829/36‑1 (MQ=255)
ttGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCt < 1:6616335/36‑1 (MQ=255)
tGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCtt < 1:6368869/36‑1 (MQ=255)
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TAAGTATTTTACAGGCAATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTT > REL606/2574156‑2574226
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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