Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 2,693,740 C→A 27.4% intergenic (‑492/‑176) stpA ← / → ygaW DNA binding protein, nucleoid‑associated/predicted inner membrane protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,693,7400C→A27.4% 4.6 ‑4.0 0.023intergenic (‑492/‑176)stpA/ygaWDNA binding protein, nucleoid‑associated/predicted inner membrane protein
Reads supporting (aligned to +/- strand):  new base (1/6):  ref base (12/4):  total (13/10)
Fisher's exact test strand distribution p-value = 1.86e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

ATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAA  >  REL606/2693705‑2693775
                                   |                                   
ataaatCATATCGGCATGTAAAAATCCACAATGTAc                                     >  1:150855/1‑36 (MQ=255)
 taaatCATATCGGCATGTAAAAATCCACAATGTACa                                    >  1:6664607/1‑36 (MQ=255)
  aaatCATATCGGCATGTAAAAATCCACAATGTACaa                                   <  1:6582357/36‑1 (MQ=255)
   aatCATATCGGCATGTAAAAATCCACTATGTAAaaa                                  >  1:1204927/1‑36 (MQ=37)
   aatCATATCGGCATGTAAAAATCCACAATGTACaaa                                  <  1:2495082/36‑1 (MQ=255)
    atCATATCGGCATGTAAAAATCCACAATGTACaaaa                                 >  1:6301091/1‑36 (MQ=255)
     tCATATCGGCATGTAAAAATCCACAATGTACaaaaa                                <  1:1624356/36‑1 (MQ=255)
       atatCGGCATGTAAAAATCCACAATGTACAAAAAAc                              >  1:1362861/1‑36 (MQ=255)
       atatCGGCATGTAAAAATCCACAATGTACAAAAAAc                              >  1:2547456/1‑36 (MQ=255)
        tatCGGCATGTAAAAATCCACAATGTACAAAAAACg                             <  1:4466809/36‑1 (MQ=255)
         atCGGCATGTAAAAATCCACAATGTACAAAAAACGa                            >  1:4734574/1‑36 (MQ=255)
         atCGGCATGTAAAAATCCACAATGTACAAAAAACGa                            >  1:6376420/1‑36 (MQ=255)
            ggCATGTAAAAATCCACAATGTACAAAAAACGAGcc                         >  1:7884255/1‑36 (MQ=255)
              cATGTAAAAATCCACAATGTACAAAAAACGAGCCGt                       >  1:856708/1‑36 (MQ=255)
                tgaaaaaaCCAAAAATGTAAAAAAAACGAGCCGTTa                     <  1:2500244/33‑1 (MQ=16)
                tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTa                     >  1:5433211/1‑36 (MQ=255)
                 gTAAAAATCCACAATGTACAAAAAACGAGCCGTTAc                    >  1:2952181/1‑36 (MQ=255)
                   aaaaaCCCAAAATGTAAAAAAAACGAGCCGTTACgg                  <  1:3245953/36‑1 (MQ=25)
                    aaaaTCAAAAATTTAAAAAAAACGAGCCGTTACGGa                 <  1:4672325/36‑1 (MQ=19)
                      aaTCCACAATGTACAAAAAACGAGCCGTTACGGAat               >  1:7552336/1‑36 (MQ=255)
                       aTCCACAATGTACAAAAAACGAGCCGTTACGGAata              >  1:5399545/1‑36 (MQ=255)
                            aaaTGAAAAAAAAACGAGCCGTTACGGAATATTTTa         <  1:3505840/35‑1 (MQ=37)
                             aaTGTAAAAAAAACGAGCCGTTACGGAATATTTTAt        <  1:1660572/36‑1 (MQ=255)
                               tGTAAAAAAAACGAGCCGTTACGGAATATTTTATCt      <  1:7796493/36‑1 (MQ=255)
                                   cAAAAAACGAGCCGTTACGGAATATTTTATCTACaa  >  1:1653484/1‑36 (MQ=255)
                                   |                                   
ATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAA  >  REL606/2693705‑2693775

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG