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breseq version 0.24 revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,724,266 | 0 | C→A | 14.1% | 12.3 ‑15.1 0.0 | 96 | 360 | srlR | DNA‑bindng transcriptional repressor |
* | REL606 | 293,942 | 0 | G→T | 16.8% | 10.7 ‑10.6 ‑0.0 | 62 | intergenic (+212/‑315) | ykgD/ykgE | predicted DNA‑binding transcriptional regulator/predicted oxidoreductase |
* | REL606 | 3,190,653 | 0 | A→G | 17.0% | 7.9 ‑18.6 0.0 | 68 | 328 | yhaO | predicted transporter |
* | REL606 | 2,735,994 | 0 | C→G | 13.2% | 5.8 ‑13.4 0.0 | 73 | 145 | ascB | cryptic 6‑phospho‑beta‑glucosidase |
* | REL606 | 2,756,588 | 0 | C→T | 11.0% | 4.8 ‑9.0 0.0 | 77 | 299 | ygbJ | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
* | REL606 | 2,864,066 | 0 | C→T | 12.8% | 4.3 ‑7.1 0.0 | 61 | intergenic (‑469/‑216) | ygdP/mutH | dinucleoside polyphosphate hydrolase/DNA mismatch repair protein |
* | REL606 | 3,398,100 | 0 | C→T | 100.0% | 3.5 | 3 | 1135 | tuf | protein chain elongation factor EF‑Tu (duplicate of tufB) |
* | REL606 | 4,211,087 | 1 | .→G | 4.0% | 2.9 ‑0.7 ‑0.1 | 50 | coding (1078/1350 nt) | lysC | aspartate kinase III |
* | REL606 | 2,768,203 | 0 | G→T | 9.5% | 2.5 ‑10.4 0.0 | 85 | intergenic (‑5/+45) | ygbE/cysC | conserved inner membrane protein/adenylylsulfate kinase |
* | REL606 | 3,781,076 | 0 | G→T | 9.6% | 1.9 ‑9.1 0.0 | 70 | 1108 | ECB_03520 | conserved hypothetical protein |
* | REL606 | 2,756,579 | 0 | T→G | 13.6% | 1.6 ‑14.7 0.0 | 98 | 290 | ygbJ | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
* | REL606 | 462,914 | 0 | T→A | 7.8% | 1.2 ‑9.1 0.0 | 54 | intergenic (‑35/‑35) | priC/ybaN | primosomal replication protein N''/conserved inner membrane protein |
* | REL606 | 3,883,217 | 1 | .→C | 5.4% | 1.2 ‑2.1 ‑0.0 | 37 | intergenic (‑411/+206) | atpI/gidB | F0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1 |
* | REL606 | 3,038,458 | 0 | G→. | 3.6% | 1.0 0.0 ‑0.9 | 55 | coding (537/2061 nt) | ECB_02838 | GspD, hypothetical type II secretion protein |
* | REL606 | 3,947,797 | 0 | A→G | 5.4% | 0.9 0.0 ‑0.2 | 55 | 10 | aslA | acrylsulfatase‑like enzyme |
* | REL606 | 1,887,465 | 0 | G→T | 5.4% | 0.8 ‑0.5 ‑0.1 | 55 | intergenic (‑121/‑38) | yobG/ECB_01797 | hypothetical protein/hypothetical protein |
* | REL606 | 2,008,867 | 1 | .→G | 4.6% | 0.8 ‑2.3 ‑0.0 | 43 | intergenic (+164/+125) | ECB_01908/yoeD | hypothetical protein/conserved hypothetical protein |
* | REL606 | 1,270,593 | 0 | T→C | 100.0% | 0.6 | 1 | intergenic (‑100/+305) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter |
* | REL606 | 1,393,595 | 1 | .→A | 5.0% | 0.6 ‑4.0 ‑0.0 | 40 | coding (697/1032 nt) | ynaI | conserved inner membrane protein |
* | REL606 | 4,341,814 | 0 | C→T | 7.5% | 0.6 ‑3.7 ‑0.0 | 60 | 216 | yjdC | predicted transcriptional regulator |
* | REL606 | 573,213 | 0 | G→T | 100.0% | 0.2 | 2 | 276 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 1,499,093 | 0 | T→G | 100.0% | 0.2 | 2 | 1010 | ECB_01413 | conserved hypothetical protein |
* | REL606 | 1,733,649 | 0 | A→C | 4.6% | 0.2 ‑1.9 ‑0.0 | 97 | 685 | pykF | pyruvate kinase |
* | REL606 | 2,585,813 | 0 | C→A | 7.7% | 0.2 ‑5.9 ‑0.0 | 57 | 752 | yfhR | predicted peptidase |
* | REL606 | 2,842,242 | 0 | C→G | 100.0% | 0.2 | 1 | noncoding (17/77 nt) | metV | tRNA‑Met |
* | REL606 | 568,958 | 0 | C→G | 100.0% | 0.1 | 2 | 979 | yhhI | predicted transposase |
* | REL606 | 931,930 | 0 | C→G | 100.0% | 0.1 | 1 | intergenic (‑366/+129) | ybjE/aqpZ | predicted transporter/aquaporin Z |
* | REL606 | 1,600,574 | 0 | T→G | 100.0% | 0.1 | 1 | intergenic (‑522/‑231) | ydfJ/ydfK | predicted transporter/predicted DNA‑binding transcriptional regulator |
* | REL606 | 1,600,579 | 0 | A→T | 100.0% | 0.1 | 1 | intergenic (‑527/‑226) | ydfJ/ydfK | predicted transporter/predicted DNA‑binding transcriptional regulator |
* | REL606 | 2,760,369 | 0 | C→A | 8.3% | 0.1 ‑8.1 0.0 | 65 | 408 | ygbN | predicted transporter |
* | REL606 | 2,774,997 | 0 | G→T | 100.0% | 0.1 | 11 | 316 | insK‑3 | IS150 putative transposase |
* | REL606 | 573,210 | 0 | C→T | 100.0% | 0.0 | 2 | 279 | ECB_00530 | conserved hypothetical protein |
* | REL606 | 1,111,290 | 0 | C→G | 100.0% | 0.0 | 3 | 86 | insF‑1 | putative transposase for IS3 |
* | REL606 | 2,650,144 | 0 | A→C | 100.0% | 0.0 | 2 | noncoding (534/2906 nt) | rrlG | 23S ribosomal RNA |
* | REL606 | 429,567 | 0 | C→A | 100.0% | ‑0.1 | 1 | intergenic (+162/+108) | clpX/insL‑2 | ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186 |
* | REL606 | 429,712 | 0 | A→G | 100.0% | ‑0.1 | 1 | 1076 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 429,992 | 0 | C→A | 100.0% | ‑0.1 | 1 | 796 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,070 | 0 | C→G | 100.0% | ‑0.1 | 2 | 718 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,135 | 0 | A→C | 100.0% | ‑0.1 | 1 | 653 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,153 | 0 | A→C | 100.0% | ‑0.1 | 1 | 635 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,434 | 0 | T→G | 100.0% | ‑0.1 | 1 | 354 | insL‑2 | putative transposase insL for insertion sequence IS186 |
* | REL606 | 430,534 | 0 | G→C | 100.0% | ‑0.1 | 1 | 254 | insL‑2 | putative transposase insL for insertion sequence IS186 |