New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 108121733 (0.550)7 (0.120) 6/70 NT 16.9% coding (892/1260 nt) yccE hypothetical protein
?REL606 = 3014302 36 (0.600)coding (883/1137 nt) ECB_02815 Capsule polysaccharide export inner‑membrane protein kpsE

GTCCCATGTCATGGAGCTTTCTTTTTTTTAAAAAACAATTCATTGATAGTTGCTTGAATAAAGAAAAATGT  >  REL606/1081182‑1081252
                                   |                                   
gTCCCATGTCATGGAGCTTTCTTTTTTTTAAAAAAc                                     <  1:1527122/36‑1 (MQ=255)
gTCCCATGTCATGGAGCTTTCTTTTTTTTAAAAAAc                                     <  1:4220975/36‑1 (MQ=255)
 tCCCATGTCATGGAGCTTTCTTTTTTTTAAAAAACa                                    <  1:1397699/36‑1 (MQ=255)
  cccATGTCATGGAGCTTTCTTTTTTTTAAAAAACaa                                   <  1:5490777/36‑1 (MQ=255)
  cccATGTCATGGAGCTTTCTTTTTTTTAAAAAACaa                                   <  1:3031712/36‑1 (MQ=255)
       gTCATGGAGCTTTCTTTTTTTTAAAAAACAATTCAt                              >  1:4299956/1‑36 (MQ=255)
        tCATGGAGCTTTCTTTTTTTTAAAAAACAATTCAtt                             <  1:6940059/36‑1 (MQ=255)
         cATGGAGCTTTCTTTTTTTTAAAAAACAATTCATTg                            >  1:3519171/1‑36 (MQ=255)
         cATGGAGCTTTCTTTTTTTTAAAAAACAATTCATTg                            <  1:3364199/36‑1 (MQ=255)
          aTGGAGCTTTCTTTTTTTTAAAAAACAATTCATTGa                           <  1:4086292/36‑1 (MQ=255)
              aGCTTTCTTTTTTTTAAAAAACAATTCATTGATAGt                       <  1:808452/36‑1 (MQ=255)
                ctttctttTTTTTAAAAAACAATTCATTGATAGTTg                     <  1:5013066/36‑1 (MQ=255)
                 tttctttTTTTTAAAAAACAATTCATTGATAGTTGc                    >  1:5488021/1‑36 (MQ=255)
                  ttctttTTTTTAAAAAACAATTCATTGATAGTTGCt                   <  1:77859/36‑1 (MQ=255)
                  ttctttTTTTTAAAAAACAATTCATTGATAGTTGCt                   <  1:7013337/36‑1 (MQ=255)
                     ttttttttAAAAAACccaccgccatacggtttagct                <  1:2919884‑M1/36‑22 (MQ=255)
                     ttttttttAAAAAACAATTCATTGATAGTTGCTTGa                >  1:4077451/1‑36 (MQ=255)
                     ttttttctAAAAAACccaccgccatacggtttagct                <  1:4791600‑M1/36‑22 (MQ=255)
                       ttttttAAAAAACccaccgccatacggtttagcttg              <  1:3803923‑M1/36‑24 (MQ=255)
                       ttttttAAAAAACAATTCATTGATAGTTGCTTGAAt              <  1:1828073/36‑1 (MQ=255)
                       ttttttAAAAAACAATTCATTGATAGTTGCTTGAAt              <  1:5210579/36‑1 (MQ=255)
                        tttttAAAAAACAATTCATTGATAGTTGCTTGAATa             >  1:7058431/1‑36 (MQ=255)
                        tttttAAAAAACAATTCATTGATAGTTGCTTGAATa             <  1:6815886/36‑1 (MQ=255)
                         ttttAAAAAACAATTCATTGATAGTTGCTTGAATaa            >  1:1624581/1‑36 (MQ=255)
                          tttAAAAAATccaccgccatacggtttagcttgtca           <  1:7451590‑M1/36‑27 (MQ=255)
                          tttAAAAAACAATTCATTGATAGTTGCTTGAATaaa           >  1:6409591/1‑36 (MQ=255)
                           ttAAAAAACAATTCATTGATAGTTGCTTGAATAAAg          <  1:7065653/36‑1 (MQ=255)
                           ttAAAAAACAATTCATTGATAGTTGCTTGAATAAAg          <  1:6590957/36‑1 (MQ=255)
                           ttAAAAAACAATTCATTGATAGTTGCTTGAATAAAg          <  1:6144760/36‑1 (MQ=255)
                           ttAAAAAACAATTCATTGATAGTTGCTTGAATAAAg          >  1:1467914/1‑36 (MQ=255)
                           ttAAAAAACAATTCATTGATAGTTGCTTGAATAAAg          >  1:2019315/1‑36 (MQ=255)
                            tAAAAAACAATTCATTGATAGTTGCTTGAATAAAGa         <  1:2027153/36‑1 (MQ=255)
                              aaaaaCAATTCATTGATAGTTGCTTGAATAAAGaaa       >  1:4278788/1‑36 (MQ=255)
                               aaaaCcccccgccatacggtttagcttgtcaccctg      <  1:2292326‑M1/36‑32 (MQ=255)
                               aaaaCAATTCATTGATAGTTGCTTGAATAAAGaaaa      <  1:2339023/36‑1 (MQ=255)
                                aaaCAATTCATTGATAGTTGCTTGAATAAAGaaaaa     <  1:6977005/36‑1 (MQ=255)
                                 aaCcccccgccatacggtttagcttgtcaccctgcg    <  1:3754823‑M1/36‑34 (MQ=255)
                                 aaCAATTCATTGATAGTTGCTTGAATAAAGAAAAAt    >  1:4779892/1‑36 (MQ=255)
                                 aaCAATTCATTGATAGTTGCTTGAATAAAGAAAAAt    >  1:223699/1‑36 (MQ=255)
                                   ccccccgccatacggtttagcttgtcaccctgcggc  <  1:7112206‑M1/36‑36 (MQ=255)
                                   cAATTCATTGATAGTTGCTTGAATAAAGAAAAATGt  >  1:3849880/1‑36 (MQ=255)
                                   cAATTCATTGATAGTTGCTTGAATAAAGAAAAATGt  <  1:7340451/36‑1 (MQ=255)
                                   |                                   
GTCCCATGTCATGGAGCTTTCTTTTTTTTAAAAAACAATTCATTGATAGTTGCTTGAATAAAGAAAAATGT  >  REL606/1081182‑1081252

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG