Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 139,942 | G→T | 18.7% | L19F (TTG→TTT) | cueO → | multicopper oxidase (laccase) |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 139,942 | 0 | G→T | 18.7% | 2.2 ‑4.1 0.0 | 42 | 57 | cueO | multicopper oxidase (laccase) |
Reads supporting (aligned to +/- strand): new base (10/0): ref base (18/13): total (28/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.72e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAATATTCCGTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAACG > REL606/139907‑139977
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aaaTATTCCGTCGCGCTGGGTGTGGCTTCGGCTTTg < 1:5306207/36‑1 (MQ=255)
atatTCCGTCGCGCTGGGTGTGGCTTCGGCTTTGcc < 1:987685/36‑1 (MQ=255)
tatTCCGTCGCGCTGGGTGTGGCTTCGGCTTTTCCg > 1:4653657/1‑36 (MQ=255)
atTCCGTCGCGCTGGGTGTGGCTTCGGCTTTGCCGc < 1:3020137/36‑1 (MQ=255)
tCCGTCGCGCTGGGTGTGGCTTCGGCTTTTCCGCtg > 1:7209102/1‑36 (MQ=255)
tCCGTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCtg < 1:4487120/36‑1 (MQ=255)
tCCGTCGCGCTGGGTGCGGCTTCGGCTTTGCCCCtg > 1:3392797/1‑36 (MQ=37)
cGTCGCGCTGGGTGTGGCTTCGGCTTTTCCGCtgtg > 1:3858459/1‑36 (MQ=255)
cGTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCtgtg < 1:4264724/36‑1 (MQ=255)
gTCGCGCTGGGTGTGGCTTTGGGTTTGCCGCTGTgg > 1:328439/1‑36 (MQ=37)
gTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCTGTgg < 1:6818598/36‑1 (MQ=255)
gTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCTGTgg > 1:4721374/1‑36 (MQ=255)
gTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCTGTgg < 1:1384577/36‑1 (MQ=255)
gTCGCGCTGGGTGTCGCTTCCGGTTTTCTCCTGTgg > 1:592865/1‑36 (MQ=2)
gTCGCGCTGGGTGAGGCTTCGGCTTTTCCGCTGTgg > 1:2381619/1‑36 (MQ=37)
cgcgCTGGGTGTGGCTTCGGCTTTTCCGCTGTTGaa > 1:335681/1‑36 (MQ=37)
cgcgCTGGGTGTGGCTTCGGCTTTGCCGCTTTGGaa < 1:455546/36‑1 (MQ=255)
gcgcTGGGTGTGGCTTCGGCTTTTCCGCTGTGGAAc > 1:1348943/1‑36 (MQ=255)
gcgcTGGGTGTGGCTTCGGCTTTTCCCCTGTgggaa > 1:4642754/1‑33 (MQ=25)
gcgcTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAAc < 1:4541675/36‑1 (MQ=255)
gcgcTGGGTGTGGCTTCGGCTTTGCACCTGTgggcc > 1:4967269/1‑33 (MQ=25)
cgcTGGGTGTGGCTTCGGCTTTGCCGCTGTTGAAcc > 1:1457271/1‑36 (MQ=255)
cgcTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAAcc > 1:4093817/1‑36 (MQ=255)
cgcTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAAcc < 1:1854177/36‑1 (MQ=255)
cgcTGGGTGTGGCTTCGGCTTTACCGCTGTGGAAcc < 1:3214257/36‑1 (MQ=255)
gcTGGGTGTGGCTTCGGCTTTTCCGCTGTGGAACcg > 1:4799730/1‑36 (MQ=255)
gcTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAAccc > 1:3464644/1‑35 (MQ=255)
gggTGTGGCTTCGGCTTTGCCGCTGTGGAACCgcgc < 1:3915137/36‑1 (MQ=255)
ggTGTGGCTTCGGCTTTGCCGCTGTGGAACCGCGCa > 1:6074858/1‑36 (MQ=255)
tgtgGCTTCGGCTTTTCCGCTTTGGAACCGCGCCGt > 1:5376462/1‑36 (MQ=25)
gtgGCTTCGGCTTTGCCGATGTGGAACCGCGGAGTa > 1:6638453/1‑36 (MQ=37)
ggCTTCGGCTTTGCCGCTGTGGAACCGCGCAGTAtt > 1:6866822/1‑36 (MQ=255)
gCTTCGGCTTTGCCGCTGTGGAACCGCGCAGTAttt > 1:4887585/1‑36 (MQ=255)
gCTTCGGCTTTGCCGCTGTGAAGCCGCGCAATAttt < 1:1708787/36‑1 (MQ=21)
gCTTCGGCTTTGCAGCTGTGGAACCGCGCAGTAttt > 1:3231158/1‑36 (MQ=255)
ttCGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGc > 1:5452111/1‑36 (MQ=255)
ttCGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGc > 1:7491439/1‑36 (MQ=255)
cGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGCgg > 1:7052446/1‑36 (MQ=255)
cGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGCgg > 1:7277048/1‑36 (MQ=255)
cGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGCgg > 1:822030/1‑36 (MQ=255)
gCTTTGCCGCTGTGGAACCGCGCAGTATTTGCGGCa < 1:4913357/36‑1 (MQ=255)
tGCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAAc < 1:2439373/36‑1 (MQ=255)
tGCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAAc > 1:2744957/1‑36 (MQ=255)
gCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAACg < 1:3304442/36‑1 (MQ=255)
gCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAACg > 1:3155776/1‑36 (MQ=255)
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AAATATTCCGTCGCGCTGGGTGTGGCTTCGGCTTTGCCGCTGTGGAACCGCGCAGTATTTGCGGCAGAACG > REL606/139907‑139977
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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