Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,292,259 | T→C | 25.6% | intergenic (+100/+44) | galU → / ← hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,292,259 | 0 | T→C | 25.6% | 2.4 ‑4.4 0.0 | 23 | intergenic (+100/+44) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (11/5): total (11/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.24e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATC > REL606/1292225‑1292293
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cttattAAATTGTCTTAAACCGGACAATAAAAAATc < 1:2507267/36‑1 (MQ=255)
cttattAAATTGTCTTAAACCGGACAATAAAAAATc < 1:7389379/36‑1 (MQ=255)
tattaAATTGTCTTAAACCGGACAATAAAAAATCCC > 1:5538403‑M1/1‑36 (MQ=255)
attaAATTGTCTTAAACCGGACAATAAAAAATCCCG > 1:2560117‑M1/1‑36 (MQ=255)
attaAATTGTCTTAAACCGGACAATAAAAAATCCCG < 1:5226107‑M1/36‑1 (MQ=255)
ttGTCTTAAACCGGACAATAAAAAATCCCGCCGATG > 1:4970211‑M1/1‑36 (MQ=255)
gTCTAAAACGGAAAAAAAAAAAACCCCGCCGATGGc < 1:2651701/36‑1 (MQ=2)
taaaaCCGGAAAAAAAAAAACCCCGCCGATGGCggg < 1:7278428/34‑1 (MQ=18)
aaaaCGGGAAAAAAAAAAATCCCGCCGATGGCGGGa < 1:2096515/35‑1 (MQ=25)
aaacGGACAAGAAAAAATCCCGACGATGGAGGGAtt > 1:981193/4‑36 (MQ=19)
aaCCGGACAATAAAAAATCCCGCCGATGGCGGGaag > 1:5974982/1‑34 (MQ=255)
aaCCGGACAATAAAAAATCCCGCCGATGGCGGGAtt > 1:138192/1‑36 (MQ=255)
ccGGACAATAAAAAATCCCGCCGATGGCGGGAtttt > 1:524509/1‑36 (MQ=255)
ccGGACAATAAAAAATCCCGCCGATGGCGGGAtttt > 1:6822993/1‑36 (MQ=255)
aaaaaaagTCCCGCCGATGGCGGGATTTTAAGCAAg < 1:3696373/34‑1 (MQ=38)
aTAAAAAAGCCCGCCGATGaccgatgcgcctataca < 1:6972855‑M1/36‑18 (MQ=255)
aaaaaaCCCCGCCGATGaccgatgcgcctatacacg < 1:3856905‑M1/36‑20 (MQ=255)
aaaaaCCCCGCCGATGaccgatgcgcctatacacga < 1:5951049‑M1/36‑21 (MQ=255)
aaaaaCCCCGCCGATGaccgatgcgcctatacacga < 1:3039471‑M1/36‑21 (MQ=255)
aaaTCCCGCCGATGGCGGGATTTTGAGCAAGTGCaa > 1:3886246/1‑36 (MQ=255)
aaaTCCCGCCGATGGCGGGATTTTAAGCAAGTGCaa > 1:5247529/1‑36 (MQ=255)
aaaCCCCGCCGATGGCGGGATTTTAAGCAAGTGCaa < 1:3372035/36‑1 (MQ=255)
aTCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATc > 1:5967197/1‑36 (MQ=255)
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CTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGATGGCGGGATTTTAAGCAAGTGCAATC > REL606/1292225‑1292293
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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