Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,735,984 | 1 | .→A | 1.9% | 2.6 ‑2.5 ‑0.1 | 103 | coding (135/1425 nt) | ascB | cryptic 6‑phospho‑beta‑glucosidase |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (2/0): ref base (28/73): total (30/73) | ||||||||||
Fisher's exact test strand distribution p-value = 8.28e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.57e-01 |
Only 100 of 112 total aligned reads displayed.
GATATGATCCCACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGA > REL606/2735949‑2736019
|
gATATGATCCCACATGGCGAGCATCGAATGGCGG.Tg > 1:3828834/1‑36 (MQ=255)
atatGATCCCACATGGCGAGCATCGAATGGCGG.GG.a > 1:1488747/1‑36 (MQ=255)
atGATCCCACATGTCGAGCATCTAATGGCGG.TG.aaa < 1:7459171/36‑1 (MQ=38)
atGATCCCACATGGCGAGCATCGAATGGCGG.TG.aaa < 1:7529662/36‑1 (MQ=255)
atGATCCCACATGGCGAGCATCGAATGGCGG.TG.aaa < 1:4342085/36‑1 (MQ=255)
tgctCCCACATGGCGAGCATCGAATGGCGG.TG.AAAc < 1:5170235/33‑1 (MQ=255)
tGATCCCACATGGCTAGCATCGAATGGCGG.TG.AAAc < 1:6677890/36‑1 (MQ=255)
tGATCCCACATGGCGATCATCGAATGGCGG.TG.AAAc < 1:1939918/36‑1 (MQ=255)
tGATCCCACATGGCGAGCATCGAATGGCGG.TG.AAAc < 1:704360/36‑1 (MQ=255)
tGATCCCACATGGCGAGCATCGAATGGCGG.TG.AAAc < 1:5545467/36‑1 (MQ=255)
gATCCCACATGGCGAGCATCGAATGGCGG.TG.AAACt < 1:499236/36‑1 (MQ=255)
gATCCCACATGGCGAGCATCGAATGGCGG.TG.AAACt < 1:2085895/36‑1 (MQ=255)
gATCCCACATGGCGAGCATCGAATGGCGG.TG.AAACt < 1:6232648/36‑1 (MQ=255)
aTCCCACATGGCGAGCATCGAATGGCGG.TG.AAACTg < 1:1465236/36‑1 (MQ=255)
tCCCACATGGCGAGCATCGAATGGCGG.TG.AAACTgg < 1:5736623/36‑1 (MQ=255)
cccACATGGCGAGCATCGAATGGCGG.TG.AAACTggg < 1:1712621/36‑1 (MQ=255)
ccACATGGCGAGCATCGAATGGCGG.TG.GAACAgggg > 1:1990958/1‑36 (MQ=37)
ccACATGGCGAGCATCGAATGGCGG.TG.AAACTgggg < 1:6618079/36‑1 (MQ=255)
ccACATGGCGAGCATCGAATGGCGG.TG.AAACTgggg < 1:8385067/36‑1 (MQ=255)
ccACATGGCGAGCATCGAATGGCGG.TG.AAACTgggg < 1:8060378/36‑1 (MQ=255)
ccACATGGCGAGCATCGAATGGCGG.TG.AAACTgggg < 1:475378/36‑1 (MQ=255)
ccACATGGCGAGCATCGAATGGCGG.GG.GAACTgggg > 1:1301547/1‑36 (MQ=37)
cacaTGGCGAGCATCGAATGGCGG.TG.GAACTggggg > 1:5406390/1‑35 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGTGGc < 1:7435561/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:3234420/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:5256865/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGc < 1:5561494/36‑1 (MQ=255)
cacaTGGCGAGCATCGAATGGCGG.TG.AAAATggggg > 1:7551594/1‑35 (MQ=255)
acaTGGCGAGCATCGAATGGCGG.TG.GAACTgggggt > 1:4494146/1‑34 (MQ=37)
acaTGGCGAGCATCGAATGGCGG.TG.GAACTTGGGCt > 1:7490456/1‑36 (MQ=37)
acaTGGCGAGCATCGAATGGCGG.TG.GAAATgggggg > 1:4243182/1‑34 (MQ=37)
acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt < 1:526716/36‑1 (MQ=255)
acaTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCt < 1:7478468/36‑1 (MQ=255)
caTGGCGAGCATCGAATGGCGG.TG.GAAATggggggg > 1:8230259/1‑33 (MQ=25)
caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg < 1:7632797/36‑1 (MQ=255)
caTGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTg < 1:1036269/36‑1 (MQ=255)
caTGGCGAGCATAGAATGGCGG.TG.AAACGgggggtt > 1:4286928/1‑33 (MQ=25)
aTGGCGAGCATCGAATGGCGG.TG.AAACTTGGGCttg > 1:2519649/1‑34 (MQ=38)
aTGGCGAGCATCGAATGGCGG.GG.AAACTGGGGCTgg > 1:7066191/1‑36 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTTGGGGTggg > 1:6340740/1‑35 (MQ=37)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGGTggg > 1:4970005/1‑35 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:5992981/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:2830970/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:4351067/36‑1 (MQ=255)
tGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGa < 1:1200523/36‑1 (MQ=255)
ggCGAGCATCGAATTGCGG.TG.AAACTGGGGCTGGaa < 1:626235/36‑1 (MQ=255)
ggCGAGCATCGAATGGCGG.TG.GAAATTGGGCGggga > 1:3231131/1‑34 (MQ=16)
ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:4264318/36‑1 (MQ=255)
ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:5836506/36‑1 (MQ=255)
ggCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:5148352/36‑1 (MQ=255)
ggCGAACATCGAATGGCGG.TG.AAACTGGGGCTGGaa < 1:5216009/36‑1 (MQ=255)
gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa < 1:231613/36‑1 (MQ=255)
gCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaa < 1:5538425/36‑1 (MQ=255)
cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa < 1:7531947/36‑1 (MQ=255)
cGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaa < 1:1893677/36‑1 (MQ=255)
gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa < 1:2389999/36‑1 (MQ=255)
gAGCATCGAATGGCGG.TG.AAACTGGGGCTGGaaaaa < 1:803035/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:5795395/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:6482206/36‑1 (MQ=255)
aGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAAc < 1:3737854/36‑1 (MQ=255)
aGCATCGAATGGCGG.GG.AAACTGGGGCTGGGAAAAc > 1:5875267/1‑36 (MQ=37)
aGCATCGAATGGCGG.CG.GAACTGGGGGTGGaacaaa > 1:924790/1‑35 (MQ=16)
gCATCGAATGGCGGCGG.AAATTAGGGGTGGgaaaaa > 1:5120213/1‑35 (MQ=0)
gCATCGAATGGCGG.TG.AAACTGGGGGTGGgaaaaag > 1:2459014/1‑34 (MQ=25)
gCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACg < 1:4903341/36‑1 (MQ=255)
gCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACg < 1:4555302/36‑1 (MQ=255)
cATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGt < 1:4749623/36‑1 (MQ=255)
tctaaTGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:6748780/33‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGTCTGGAAAAACGttt < 1:1075479/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:2534714/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:3120013/36‑1 (MQ=255)
tCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGttt < 1:1243439/36‑1 (MQ=255)
cGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGtttt < 1:8334566/36‑1 (MQ=255)
gAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTc < 1:7097397/36‑1 (MQ=255)
aTGGCGG.TGAAAAATGGGGTGGGAAAAAATtttttg > 1:3807395/1‑34 (MQ=2)
aTGGCGG.TG.GAACTGGGGCTGGAAAAACGTTTTCAg < 1:3362099/36‑1 (MQ=255)
aTGGCGG.TG.AAACAGGGGGTGGGAAAAAGTTTTTAg > 1:20032/1‑36 (MQ=16)
tGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGt < 1:2343083/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:1882446/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg > 1:1351041/1‑36 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:4251907/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg > 1:4657050/1‑36 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:1228703/36‑1 (MQ=255)
gCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTg < 1:3902403/36‑1 (MQ=255)
cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc < 1:4339652/36‑1 (MQ=255)
cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc < 1:3238496/36‑1 (MQ=255)
cGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgc < 1:6061069/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:8451297/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg > 1:610725/1‑36 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:4470762/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:4100827/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg < 1:2227285/36‑1 (MQ=255)
gg.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcg > 1:1025065/1‑36 (MQ=255)
g.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcgc < 1:2813153/36‑1 (MQ=255)
g.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTgcgc > 1:2712371/1‑36 (MQ=255)
tG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGcgcg < 1:965159/36‑1 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa < 1:7127807/36‑1 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa > 1:4340649/1‑36 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa > 1:2897027/1‑36 (MQ=255)
g.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGa > 1:2281042/1‑36 (MQ=255)
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GATATGATCCCACATGGCGAGCATCGAATGGCGG.TG.AAACTGGGGCTGGAAAAACGTTTTCAGTTGCGCGA > REL606/2735949‑2736019
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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