Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,021,723 | C→G | 13.3% | A229G (GCA→GGA) | ycbF → | predicted periplasmic pilini chaperone |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,021,723 | 0 | C→G | 13.3% | 2.5 ‑3.8 0.0 | 42 | 686 | ycbF | predicted periplasmic pilini chaperone |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (16/19): total (23/19) | ||||||||||
Fisher's exact test strand distribution p-value = 2.26e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CTGGCGGGCGATAAATGATTACGGCGGGTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTCG > REL606/1021688‑1021758
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cTGGCGGGCGATAAATGATTACGGCGGGTTGAGTGc < 1:5027219/36‑1 (MQ=255)
cTGGCGGGCGATAAATGATTACGGCGGGTTGAGTGc < 1:1622631/36‑1 (MQ=255)
tGGCGGGCGATAAATGATTACGGCGGGTTGAGTGCa < 1:2162231/36‑1 (MQ=255)
tGGCGGGCGATAAATGATTACGGCGGGTTGAGTGCa < 1:715402/36‑1 (MQ=255)
cgggcgATAAATGATTACGGCGGGTTGAGTGCAaag < 1:1050713/36‑1 (MQ=255)
gggcgATAAATGATTACGGCGGGTTGAGTGCAaaga < 1:3187398/36‑1 (MQ=255)
gggcgATAAATGATTACGGCGGGGTGTGTGGaaaaa > 1:6420302/1‑34 (MQ=21)
gcgATAAATGATTACGGCGGGTTTTGTGTAaaaaag > 1:7756739/1‑36 (MQ=19)
gcgATAAATGATTACGGCGGGGTGGGTGGGaagaag > 1:4015709/1‑36 (MQ=19)
gATAAATGATTACGGCGGGTTGAGTGCAAAGAAGGa < 1:5740156/36‑1 (MQ=255)
aTAAATGATTACGGCGGGTTGAGTGCAAAGAAGGAg < 1:1909557/36‑1 (MQ=255)
aTAAATGATTACGGCGGGTGGATTGCAAAGAAGGAg > 1:8166237/1‑36 (MQ=25)
aTAAATGATTACGGCGGGGTTTGTGGAAAGAAGGAg > 1:3485202/1‑36 (MQ=19)
aaaTGATTACGGCGGGTTTTGTGGAAAGAAAGAgga > 1:1747977/1‑34 (MQ=16)
aaTGATTACGGCGGGGTTACTGCCTAGAAGGAGCaa > 1:7920191/1‑36 (MQ=16)
aTGATTACGGCGGGTTTAGTGCCAAGAAGGAGCaaa > 1:8070894/1‑36 (MQ=38)
aTGATTACGGCGGGTTTACTGGCTAGAAGGAGCaga > 1:424975/1‑34 (MQ=9)
tGATTACGGCGGGTTGAGTGCAAAGAAGGAGCaaaa < 1:3098220/36‑1 (MQ=255)
tGATTACGGCGGGGTGAGTGCAAAGAAGGAGGaaaa > 1:2402087/1‑36 (MQ=37)
gATTACGGCGGGGTGGGTGGAAAAAAAGAGGaaaaa > 1:4600597/1‑35 (MQ=2)
tACGGCGGGTTGAGTGCAAAGAAGGAGCAAAATCTg < 1:2596683/36‑1 (MQ=255)
aCGGCGGGTTGAGTGCAAAGAAGGAGCAAAATCTGc < 1:1349981/36‑1 (MQ=255)
cggcggGTTGAGTGCAAAGAAGGAGCAAAATCTGcc > 1:1481928/1‑36 (MQ=255)
gcggGTTGAGTGCAAAGAAGGAGCAAAATCTGCCCt < 1:6468501/36‑1 (MQ=255)
cggGTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTg > 1:1903497/1‑36 (MQ=255)
gggTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGa > 1:7530408/1‑36 (MQ=255)
gggTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGa > 1:6318364/1‑36 (MQ=255)
ggTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGaa > 1:4396008/1‑36 (MQ=255)
gTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGaaa < 1:1367880/36‑1 (MQ=255)
gTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGaaa > 1:5030876/1‑36 (MQ=255)
ttGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAAc < 1:848048/36‑1 (MQ=255)
tGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACa > 1:7950866/1‑36 (MQ=255)
tGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACa < 1:6058906/36‑1 (MQ=255)
tGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACa < 1:201046/36‑1 (MQ=255)
tGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACa < 1:2480791/36‑1 (MQ=255)
gAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACAg < 1:6197208/36‑1 (MQ=255)
aGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACAgg > 1:2444839/1‑36 (MQ=255)
ttcAAATAAGGATCAAAATATGCCCTGAAACAGGtt < 1:2446766/34‑1 (MQ=21)
tGCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGtt > 1:2319197/1‑36 (MQ=255)
tGCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGtt < 1:7742169/36‑1 (MQ=255)
tGCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGtt < 1:502268/36‑1 (MQ=255)
gCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTc < 1:6158213/36‑1 (MQ=255)
gCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTc > 1:7179603/1‑36 (MQ=255)
gCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTc > 1:8087209/1‑36 (MQ=255)
gCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTc > 1:1090703/1‑36 (MQ=255)
cAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTCg < 1:1898633/36‑1 (MQ=255)
cAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTCg < 1:237170/36‑1 (MQ=255)
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CTGGCGGGCGATAAATGATTACGGCGGGTTGAGTGCAAAGAAGGAGCAAAATCTGCCCTGAAACAGGTTCG > REL606/1021688‑1021758
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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