Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 518,720 | G→T | 12.9% | intergenic (‑191/‑126) | allD ← / → fdrA | ureidoglycolate dehydrogenase/membrane protein FdrA |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 518,720 | 0 | G→T | 12.9% | 3.8 ‑3.4 ‑0.0 | 31 | intergenic (‑191/‑126) | allD/fdrA | ureidoglycolate dehydrogenase/membrane protein FdrA |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (10/17): total (14/17) | ||||||||||
Fisher's exact test strand distribution p-value = 3.18e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.62e-01 |
TTAAAAAATAACACGTAATAGCATGGCGGTTATTTGAATTCTTTTGTTAATAATCCCTGTGTGATATTCAT > REL606/518685‑518755
|
ttaAAAAATAACACGTAATAGCATGGCGGTTATTTg < 1:6509004/36‑1 (MQ=255)
taAAAAATAACACGTAATAGCATGGCGGTTATTTGa < 1:6494888/36‑1 (MQ=255)
aaaaTAACACGTAATAGCATGGCGGTTATTTGAAtt < 1:4279747/36‑1 (MQ=255)
aaaaTAACACGTAATAGCATGGCGGTTATTTGAAtt < 1:6129296/36‑1 (MQ=255)
aaTAACACGTAATAGCATGGCGGTTATTTGAATTCt < 1:5887832/36‑1 (MQ=255)
tAACACGTAATAGCATGGCGGTTATTTGAATTCttt < 1:4036641/36‑1 (MQ=255)
tAACACGTAATAGCATGGCGGTTATTTGAATTCttt < 1:3155466/36‑1 (MQ=255)
acacGTAATAGCATGGCGGGTTTTTTTATTTttttt > 1:3561197/1‑35 (MQ=12)
cacGTAATAGCATGGCGGGTGTTTTTATTTtttttt > 1:4918897/1‑34 (MQ=12)
acGTAATAGCATGGCGGTTATTTGAATTCTTTTGtt < 1:205326/36‑1 (MQ=255)
gTAATAGCATGGCGGTTTTTTTTATTTTTTTTtttt > 1:1558833/1‑34 (MQ=9)
tAATAGCATGGCGGTTATTTGAATTCTTTTGTtaat < 1:5564436/36‑1 (MQ=255)
gCATGGCGGTTATTTTTAGTATTTTTTTtataatta > 1:4874622/1‑34 (MQ=2)
gCATGGCGGTTATTTGAATTCTTTTGTTAATAATcc < 1:1853005/36‑1 (MQ=255)
gCATGGCGGTTATTTGAATTCTTTTGTTAATAATcc < 1:502485/36‑1 (MQ=255)
gCGGTTATTTGAATTCTTTTTTTAATAATCCCtgtg > 1:1714730/1‑36 (MQ=255)
gCGGTTATTTGAATTCTTTTGTTAATAATCCCtgtg < 1:6880788/36‑1 (MQ=255)
ggTTATTTGAATTCTTTTGTTAATAATCCCtgtgtg < 1:6019557/36‑1 (MQ=255)
ggTTATTTGAATTCTTTTGTTAATAATCCCtgtgtg > 1:1631288/1‑36 (MQ=255)
gTTATTTGAATTCTTTTGTTAATAATCCCTGTGTGa > 1:3399173/1‑36 (MQ=255)
gTTATTTGAATTCTTTTGTTAATAATCCCTGTGTGa < 1:110884/36‑1 (MQ=255)
tATTTGAATTCTTTTTTTAATAATCCCTTTTTGata > 1:519509/1‑36 (MQ=25)
tATTTGAATTCTTTTGTTAATAATCCCTGTGTGata > 1:2519651/1‑36 (MQ=255)
aTTTGAATTCTTTTGTTAATAAGCCCTGTGTGatat < 1:4283188/36‑1 (MQ=255)
tttGAATTCTTTTGTTAATAATCCCTGTGTGATAtt < 1:3722065/36‑1 (MQ=255)
tttGAATTCTTTTGTTAATAATCCCTGTGTGATAtt > 1:2953548/1‑36 (MQ=255)
tttGAATTCTTTTGTTAATAATCCCTGTGTGATAtt < 1:632457/36‑1 (MQ=255)
tttGAATTCTTTTGTTAATAATCCCTGTGTGATAtt > 1:1516381/1‑36 (MQ=255)
ttGAATTCTTTTGTTAATAATCCCTGTGTGATATtc < 1:2931152/36‑1 (MQ=255)
ttGAATTCTTTTGTTAATAATCCCTGTGTGATATtc > 1:1792793/1‑36 (MQ=255)
tGAATTCTTTTGTTAATAATCCCTGTGTTATAttaa > 1:385109/1‑34 (MQ=38)
tGAATTCTTTTGTTAATAATCCCTGTGTGATATtca > 1:3505367/1‑36 (MQ=255)
gAATTCTTTTGTTAATAATCCCTGTGTGATATtcat < 1:2121610/36‑1 (MQ=255)
|
TTAAAAAATAACACGTAATAGCATGGCGGTTATTTGAATTCTTTTGTTAATAATCCCTGTGTGATATTCAT > REL606/518685‑518755
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 26 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
|