Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 42,823 | C→G | 15.7% | pseudogene (154/885 nt) | caiB ← | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 42,823 | 0 | C→G | 15.7% | 5.3 ‑4.6 0.0 | 43 | pseudogene (154/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (16/20): total (23/20) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CAGGCCAGAAAAGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTCAACATCACCGTTCTGAATCA > REL606/42788‑42858
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aaGGCCAGAAAAGTAATCGGCGGTATACGGGAaggc < 1:5901433/35‑1 (MQ=255)
aGGCCAGAAAAGTAATCGGCGGTATACGGGAaggca > 1:376822/1‑36 (MQ=255)
aGGCCAGAAAAGTAATCGGCGGGATAGGGGAaggca > 1:2816458/1‑36 (MQ=37)
gCCAGAAAAGTAATCGGCGGTATACGGGAaggcagg < 1:3857520/36‑1 (MQ=255)
ccAGAAAAGTAATCGGCGGTATACGGGAagggaggg > 1:5600863/1‑35 (MQ=255)
caaGAAAAGTAATCGGCGGTATACGGGAaggcaggc < 1:3326536/34‑1 (MQ=255)
gAAAAGTAATCGGCGGTATACGGGAAGGGAGGCAtt > 1:1512948/1‑36 (MQ=255)
gAAAAGTAATCGGCGGTATACGGGAAGGCAGGCAtt < 1:263622/36‑1 (MQ=255)
gAAAAGTAATCGGCGGGATACGGGAAGGGAGGCAtt > 1:2941238/1‑36 (MQ=38)
aaaaGTAATCGGCGGTCTAAGGGGAGGCAGGGATTg > 1:4755970/1‑36 (MQ=19)
aaaaGTAATCGGCGGTATACCGGAAGGGAGGCATTg > 1:7658490/1‑36 (MQ=38)
aaaGTAATCGGCGGTATGCGGGGAGGGAGGGAtttg > 1:1747967/1‑34 (MQ=16)
aaGTAATCGGCGGTATACGGGAAGGCAGGCATTGGc < 1:5587929/36‑1 (MQ=255)
aGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCt < 1:6999242/36‑1 (MQ=255)
aGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCt < 1:3636282/36‑1 (MQ=255)
gTAATCGGCGGTATACGGGGAGGGAGGGGTTGGGTg > 1:4940165/1‑36 (MQ=255)
gTAATCGGCGGTATACGGGGAGGGAGGGATTGGGTg > 1:3448629/1‑36 (MQ=255)
gTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTg < 1:7386452/36‑1 (MQ=255)
gTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTg < 1:5338708/36‑1 (MQ=255)
gTAATCGGCGGTATAAGGGGAGGGAGGGATTGGGTg > 1:6745150/1‑36 (MQ=16)
aTCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTc < 1:5478306/36‑1 (MQ=255)
ggcggTATACGGGAAGGCAGGCATTGGCTGGTCAAc < 1:8021647/36‑1 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCCACa > 1:4401117/1‑36 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa > 1:2456415/1‑36 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa < 1:2240607/36‑1 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa > 1:4790311/1‑36 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa > 1:5125116/1‑36 (MQ=255)
gcggTATACGGGAAGGCAGGAGTTGGCTGGTCAAct > 1:5645838/1‑35 (MQ=37)
cggTATACGGGAAGGCAGGCATTGGCTGGTCAACAt < 1:4162452/36‑1 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc > 1:6659865/1‑36 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc < 1:859456/36‑1 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc < 1:864415/36‑1 (MQ=255)
gTATACGGGAAGGCAGGCATTGGCTGGTCAACATCa < 1:313303/36‑1 (MQ=255)
tataCGGGAAGGCAGGCATTGGCTGGTCAACATCAc < 1:8186756/36‑1 (MQ=255)
ataCGGGAAGGCAGGCATTGGCTGGTCAAGATCAcc > 1:3298982/1‑36 (MQ=255)
ataCGGGAAGGCAGGCATTGGCTGGTCAACATCAcc < 1:1178400/36‑1 (MQ=255)
ataCGGGAAGGCAGGCATTGGCTGGTCAACATCAcc < 1:5480697/36‑1 (MQ=255)
ataCGGGAAGGCAGGCATTGGCTGGGCAACATCAcc > 1:5794178/1‑36 (MQ=255)
taCGGGAAGGCAGGCATTGGCTGGTCAACATCACCg > 1:2993049/1‑36 (MQ=255)
taCGGGAAGGCAGGCATTGGCTGGGCAACATCACCg > 1:3019635/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACATCACCGt > 1:5092310/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACATCACCGt > 1:7333358/1‑36 (MQ=255)
cGGGACGACAGGCATGGGCTGGTCAACATCACCGtt < 1:1931930/36‑1 (MQ=21)
cGGGAAGGCAGGCATTGGCTGGTCAACATCACCGtt > 1:4293171/1‑36 (MQ=255)
cGGGAAGGCAGGCATTGGCTGGTCAACATCACCGtt < 1:1746205/36‑1 (MQ=255)
gggAAGGCAGGCATTGGCTGGTCAACATCACCGTTc < 1:7446200/36‑1 (MQ=255)
gggAAGGCAGGCATTGGCTGGTCAACATCACCGTTc < 1:4867042/36‑1 (MQ=255)
ggAAGGCAGGCATTGGCTGGTCAACATCACCGTTCt > 1:4142397/1‑36 (MQ=255)
gAAGGCAGGCATTGGCTGGTCAACATCACCGTTCTg > 1:5205229/1‑36 (MQ=255)
ggcaggcaTTGGCTGGTCAACATCACCGTTCTGAAt < 1:7165329/36‑1 (MQ=255)
ggcaggcaTTGGCTGGTCAACATCACCGTTCTGAAt > 1:8178750/1‑36 (MQ=255)
ggcaggcaTTGGCTGGACCACATCACCGTTCTGAAt > 1:4608170/1‑36 (MQ=37)
gcaggcaTTGGCTGGTGAAGATCACCGTTCTGCATc > 1:1791092/1‑36 (MQ=25)
gcaggcaTTGGCTGGTCAACATCACCGTTCTGAATc > 1:5573516/1‑36 (MQ=255)
gcaggcaTTGGCTGGTCAACATCACCGTTCTGAATc < 1:4777875/36‑1 (MQ=255)
gcaggcaTTGGCTGGTCAACATCACCGTTCTGAATc > 1:3492789/1‑36 (MQ=255)
gcaggcaTTGGCTGGTCAACATCAACGGTCTGAATc > 1:774333/1‑36 (MQ=37)
caggcaTTGGCTGGTCAACATCACCGTTCTGGATCa > 1:1821176/1‑36 (MQ=255)
caggcaTTGGCTGGTCAACATCACCGTTCTGAATCa > 1:8459279/1‑36 (MQ=255)
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CAGGCCAGAAAAGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTCAACATCACCGTTCTGAATCA > REL606/42788‑42858
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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