Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,045,069 | G→T | 46.7% | T312N (ACC→AAC) | yghJ ← | predicted inner membrane lipoprotein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,045,069 | 0 | G→T | 46.7% | 75.6 ‑0.2 ‑0.2 | 56 | 935 | yghJ | predicted inner membrane lipoprotein |
Reads supporting (aligned to +/- strand): new base (14/11): ref base (15/14): total (31/25) | ||||||||||
Fisher's exact test strand distribution p-value = 7.90e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.24e-01 |
CCAGTTCAAAGGTATCGATACCAAAGGAGATGGTTTCGCCCCAGCTAAAGGAAAATTCACCATTTTCC > REL606/3045037‑3045104
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ccAGTTCAAAGGTATCGATACCAAAGGAGATGGttt < 1:4913273/36‑1 (MQ=255)
cAGTTCAAAGGTATCGATACCAAAGGAGATGGTTTc < 1:3366589/36‑1 (MQ=255)
aGTTCAAAGGTATCGATACCAAAGGAGATGTTTTCg < 1:2997166/36‑1 (MQ=255)
gTTCAAAGGTATCGATACCAAAGGAGATGTTTTCGc < 1:4850598/36‑1 (MQ=255)
gTTCAAAGGTATCGATACCAAAGGAGATGGTTTCGc < 1:7055199/36‑1 (MQ=255)
gTTCAAAGGTATCGATACCAAAGGAGATGGTTTCGc > 1:3514723/1‑36 (MQ=255)
ttCAAAGGTATCGATACCACAGGAGATGGTTTctgg > 1:2512036/1‑33 (MQ=37)
ttCAAAGGTATCGATACCAAAGGAGATGTTTTTGcc > 1:6913860/1‑36 (MQ=37)
tCAAAGGTATCGATACCAAAGGAGATGGTTTCGccc < 1:2004965/36‑1 (MQ=255)
cAAAGGTATCGATACCAAAGGAGATGTTTTCGcccc < 1:5830675/36‑1 (MQ=255)
cAAAGGTATCGATACCAAAGGAGATGGTTTCGcccc > 1:432456/1‑36 (MQ=255)
aaaGGTATCGATACCAAAGGAGATGTTTTCGCCCCa > 1:154060/1‑36 (MQ=255)
aaaGGTATCGATACCAAAGGAGATGTTTTCGCCCCa < 1:7143015/36‑1 (MQ=255)
aaaGGTATCGATACCAAAGGAGATGGTTTCGCCCCa < 1:1957360/36‑1 (MQ=255)
aaaGGTATCGATACCAAAGGAGATGGTTTCGCCCCa > 1:7881462/1‑36 (MQ=255)
aaGGTATCGATACCAAAGGAGATGTTTTCGCCCCAg > 1:5823956/1‑36 (MQ=255)
aaGGTATCGATACCAAAGGAGATGGTTTCGCCCCAg > 1:5892772/1‑36 (MQ=255)
aGGTATCGATACCAAAGGAGATGTTTTCGCCCCAGc > 1:7558780/1‑36 (MQ=255)
aGGTATCGATACCAAAGGAGATGGTTTCGCCCCAGc < 1:336813/36‑1 (MQ=255)
aGGTATCGATACCAAAGGAGATGGTTTCGCCCCAGc < 1:4599470/36‑1 (MQ=255)
ggTATCGATCCCAAAGGAGATGGTTTCGCCCCAGCt < 1:2949733/36‑1 (MQ=255)
ggTATCGATACCAAAGGAGATGGTTTCGCCCCAGCt > 1:6824456/1‑36 (MQ=255)
gTATCGATACCAAAGGAGATGGTTTCGCCCCAGCTa > 1:2963881/1‑36 (MQ=255)
tATCGATACCAAAGGAGATGTTTTCGCCCCAGCTaa < 1:2821334/36‑1 (MQ=255)
aTCGATACCAAAGGAGATGTTTTTGCCCCAGCTaaa > 1:3531877/1‑36 (MQ=37)
aTCGATACCAAAGGAGATGTTTTCGCCCCAGCTaaa > 1:4579195/1‑36 (MQ=255)
aTCGATACCAAAGGAGATGGTTTCGCCCCAGCTaaa > 1:4251632/1‑36 (MQ=255)
aTCGATACCAAAGGAGATGGTTTCGCCCCAGCTaaa < 1:4221845/36‑1 (MQ=255)
aTCGATACCAAAGGAGATGGTTTCGCCCCAGCTaaa < 1:4533299/36‑1 (MQ=255)
aTCGATACCAAAGGAGATGGTTTCGCCCCAGCTaaa > 1:5561446/1‑36 (MQ=255)
aTCGATACAAAAGGAGATGTTTTCGCCCCAGCTaaa < 1:3159666/36‑1 (MQ=37)
tCGATACCAAAGGAGATGTTTTCGCCCCAGCTAAAg < 1:5368395/36‑1 (MQ=255)
gATACCAAAGGAGATGGTTTCGCCCCAGCTAAAGGa > 1:6960725/1‑36 (MQ=255)
gATACCAAAGGAGATGGTTTCGCCCCAGCTAAAGGa > 1:5420904/1‑36 (MQ=255)
aTACCAAAGGAGATGTTTTCGCCCCAGCTAAAGGaa > 1:6130641/1‑36 (MQ=255)
aTACCAAAGGAGATGTTTTCGCCCCAGCTAAAGGaa > 1:1352055/1‑36 (MQ=255)
tACCAAAGGAGATGTTTTCGCCCCAGCTAAAGGaaa < 1:7313240/36‑1 (MQ=255)
tACCAAAGGAGATGTTTTCGCCCCAGCTAAAGGaaa > 1:1087765/1‑36 (MQ=255)
tACCAAAGGAGATGGTTTCGCCCCAGCTAAAGGaaa < 1:5622201/36‑1 (MQ=255)
aCCAAAGGAGATGCTTTCGCCACAGCTAAAGGaaaa > 1:460120/1‑36 (MQ=37)
aCCAAAGGAGATGATTTCGCCCCAGCTAAAGGaaaa > 1:5884483/1‑36 (MQ=255)
ccAAAGGAGATGGTTTCGCCCCAGCTAAAGGAAAAt > 1:1414248/1‑36 (MQ=255)
ccAAAGGAGATGGTTTCGCCCCAGCTAAAGGAAAAt < 1:365115/36‑1 (MQ=255)
cAAAGGAGATGTTTTCGCCCCAGCTAAAGGAAAAtt > 1:4129377/1‑36 (MQ=255)
aaGGAGATGTTTTCGCCCCAGCTAAAGGAAAATTCa > 1:7891893/1‑36 (MQ=255)
aaGGAGATGTTTTCGCCCCAGCTAAAGGAAAATTCa > 1:7018695/1‑36 (MQ=255)
aaGGAGATGTTTTCGCCCCAGCTAAAGGAAAATTCa > 1:4662239/1‑36 (MQ=255)
aaGGAGATGGTTTCGCCCCAGCTAAAGGAAAATTCa > 1:6634368/1‑36 (MQ=255)
aGGAGATGTTTTCTCCCCAGCTAAAGGAAAATACAc > 1:185300/1‑36 (MQ=25)
aGGAGATGTTTTCGCCCCAGCTAAAGGAAAATTCAc < 1:6724225/36‑1 (MQ=255)
aGGAGATGGTTTCGCCCCAGCTAAAGGAAAATTCAc < 1:6883251/36‑1 (MQ=255)
gagaTGTTTTCGCCCCAGCTAAAGGAAAATTCACCa < 1:3956510/36‑1 (MQ=255)
agaTGTTTTCGCCCCAGCTAAAGGAAAATTCACCAt < 1:6071353/36‑1 (MQ=255)
agaTGGTTTCGCCCCAGCTAAAGGAAAATTCACCAt > 1:2302397/1‑36 (MQ=255)
gaTGGTTTCGCCCCAGCTAAAGGAAAATTCACCAtt > 1:6171162/1‑36 (MQ=255)
gaTGGTTTCGCCCCAGCTAAAGGAAAATTCACCAtt < 1:4658622/36‑1 (MQ=255)
ggTTTCGCCCCAGCTAAAGGAAAATTCACCATTTTc < 1:237747/36‑1 (MQ=255)
ggTTTCGCCCCAGCTAAAGGAAAATTCACCATTTTc < 1:4421466/36‑1 (MQ=255)
gTTTCGCCCCAGCTAAAGGAAAATTCACCATTTTcc < 1:3539430/36‑1 (MQ=255)
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CCAGTTCAAAGGTATCGATACCAAAGGAGATGGTTTCGCCCCAGCTAAAGGAAAATTCACCATTTTCC > REL606/3045037‑3045104
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 24 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
|