Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,226,149 | G→C | 6.8% | G145A (GGC→GCC) | malK → | fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,226,149 | 0 | G→C | 6.8% | 3.2 0.0 ‑0.2 | 44 | 434 | malK | fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
Reads supporting (aligned to +/- strand): new base (2/1): ref base (20/21): total (22/22) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.70e-01 |
CTCTCCGGTGGTCAGCGTCAGCGTGTGGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCGTATTTTTGC > REL606/4226115‑4226184
|
ctctCCGGTGGTCAGCGTCAGCGTGTGGCGATTGGc < 1:3095428/36‑1 (MQ=255)
ctctCCGGTGGTCAGCGTCAGCGAGTGGCGATTGGc > 1:66462/1‑36 (MQ=255)
tctcGGGTGGTCAGCGTGAGCGTGTGGCGATTGGcc < 1:1796862/36‑1 (MQ=21)
tctcCGGTGGTCAGCGTCAGCGTGTGGCGATTGGcc < 1:6951326/36‑1 (MQ=255)
ccGGTGGTCAGCGTCAGCGTGTGGCGATTGGCCGTa < 1:123734/36‑1 (MQ=255)
cGGTGGTCAGCGTCAGCGTGTGTCGATTGGCCGTAc < 1:3211204/36‑1 (MQ=255)
ggtggtCAGCGTCAGCGTGTGGCGATTGGCCGTACg < 1:7193019/36‑1 (MQ=255)
ggtggtCAGCGTCAGCGTGTGGCGATTGGCCGTACg > 1:5032789/1‑36 (MQ=255)
ggtggtCAGCGTCAGCGTGTGGCGATTGGCCGTACg > 1:3743314/1‑36 (MQ=255)
ggtggtCAGCGTCAGCGTGTGGCGATTGGCCGTACg > 1:2934319/1‑36 (MQ=255)
tggtCAGCGTCAGCGTGTGGCGATTGGCCGTACGCt < 1:4925107/36‑1 (MQ=255)
tggtCAGCGTCAGCGTGTGGCGATTGGCCGTACGCt > 1:6734359/1‑36 (MQ=255)
ggtCAGCGTCAGCGTGTGGCGATTGGCCGTACGCtg < 1:4740630/36‑1 (MQ=255)
ggtCAGCGTCAGCGTGTGGCGATTGGCCGTACGCtg > 1:3290519/1‑36 (MQ=255)
gtcagcgtcagcGTGTGGCGATTGGCCGTACGCtgg > 1:7251430/1‑36 (MQ=255)
gggagcggcagcgtGTGGCGATTGCCCGTGCGCtgg < 1:2045627/33‑1 (MQ=11)
gcgtcagcgtGTGGCGATTGGCCGTACGCTGGTGGc > 1:2445099/1‑36 (MQ=255)
ggtcagcgtGTGGCGATTGGCCTTACGCTGGTGGcc < 1:793289/35‑1 (MQ=255)
cgtcagcgtGTGGCGATTGGCCGTACGCTGGTGGcc < 1:5444508/36‑1 (MQ=255)
cgccagcgtGTGGCGATTGGCCGTACGCTGGTGGcc < 1:863526/33‑1 (MQ=255)
gtcagcgtGTGGCGATTGGCCGTACGCTGGTGGCCg > 1:4467497/1‑36 (MQ=255)
gtcagcgtGTGGCGATTGGCCGTACGCTGGTGGCCg > 1:5609819/1‑36 (MQ=255)
tcagcgtGTGGCGATTTGCCGTACGCTGGTGGCCGa > 1:2889450/1‑36 (MQ=255)
agcgtGTGGCGATTGGCCGTACGCTGGTGGCCGAGc > 1:6911240/1‑36 (MQ=255)
agcgtGTGGCGATTGGCCGTACGCTGGTGGCCGAGc > 1:4370113/1‑36 (MQ=255)
agcgtGTGGCGATTGCCCGCGCGCTGGCGGGGGAGc > 1:3204512/1‑36 (MQ=14)
agcgtGTGGCGATTGCCCGCGCGCTGGCGGGGGAGc > 1:5324786/1‑36 (MQ=14)
gcgtGTTGCGATTGGCCGTACGCTGGTGGCCGAGcc < 1:188816/36‑1 (MQ=255)
gcgtGTGGCGATTGGCCGTACGCTGGTGGCCGAGcc < 1:385031/36‑1 (MQ=255)
cgtGTGGCGATTGGCCGTACGCTGGTGGCCGAGCCa > 1:3107908/1‑36 (MQ=255)
gtgtGGCGATTGGCCGTACGCTGGTGGCCGAGCCaa < 1:3611878/36‑1 (MQ=255)
gtgtGGCGATTGGCCGTACGCTGGTGGCCGAGCCaa < 1:525163/36‑1 (MQ=255)
tgtgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAg < 1:4657598/36‑1 (MQ=255)
tgtgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAg < 1:2899731/36‑1 (MQ=255)
gtgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGc > 1:4951802/1‑36 (MQ=255)
gtgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGc < 1:3641336/36‑1 (MQ=255)
gtgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGc < 1:3020009/36‑1 (MQ=255)
tgGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCg > 1:3622845/1‑36 (MQ=255)
ggCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCGt > 1:1646689/1‑36 (MQ=255)
ggCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCGt > 1:2941886/1‑36 (MQ=255)
ggCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCGt < 1:839260/36‑1 (MQ=255)
gATTGGCCGTACGCTGGTGGCCGAGCCAAGCGTAtt > 1:1857072/1‑36 (MQ=255)
gATTGGCCGTACGCTGGTGGCCGAGCCAAGCGTAtt > 1:356711/1‑36 (MQ=255)
atgggCCGTACGCTGGTGGCCGAGCCAAGCGTAttt < 1:2351009/33‑1 (MQ=255)
ttGGCCGTACGCTGGTGGCCGAGCCAAGCGTAtttt < 1:897828/36‑1 (MQ=255)
gCCGTACGCTGGTGGCCGAGCCAAGCGTATTTTTGc > 1:4800731/1‑36 (MQ=255)
gCCGTACGCTGGTGGCCGAGCCAAGCGTATTTTTGc < 1:1579517/36‑1 (MQ=255)
|
CTCTCCGGTGGTCAGCGTCAGCGTGTGGCGATTGGCCGTACGCTGGTGGCCGAGCCAAGCGTATTTTTGC > REL606/4226115‑4226184
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|