Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,168,138 | A→G | 25.8% | R90R (CGA→CGG) ‡ | pabC → | 4‑amino‑4‑deoxychorismate lyase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,168,138 | 0 | A→G | 25.8% | 3.8 ‑2.5 0.0 | 27 | 270 | pabC | 4‑amino‑4‑deoxychorismate lyase |
Reads supporting (aligned to +/- strand): new base (6/1): ref base (8/11): total (15/12) | ||||||||||
Fisher's exact test strand distribution p-value = 8.09e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAGTCGTGATCAGTCGCGGTAGTGGCGGGCGAGGGTACAGCACATTGAACAGCGGACCAGCAACGCG > REL606/1168107‑1168173
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aaGTCGTGATCAGTCGCGGTAGTGGCGGGGGGgggg > 1:1954491/1‑35 (MQ=37)
aaGTCGTGATCAGTCGCGGTAGTGGCGGGCGGgggg > 1:1789389/1‑35 (MQ=255)
aaGTCGTGATCAGTCGCGGTAGTGGCGGGCGAGGGt < 1:33180/36‑1 (MQ=255)
aGTCGTGATCAGTCGCGGTAGTGGCGGGGGGggggg > 1:3499161/1‑34 (MQ=25)
aGTCGTGATCAGTCGCGGTAGTGGCGGGGGGggggg > 1:189200/1‑34 (MQ=25)
aGTCGTGATCAGTCGCGGTAGTGGCGGGCGAGGGTa < 1:5016397/36‑1 (MQ=255)
aTCAGTCGCGGTAGTGGCGGGCGAGGGTACAGcaca < 1:2215117/36‑1 (MQ=255)
tCAGTCGCGGTAGTGGCGGGCGAGGGTACAGcactt < 1:2727851/36‑3 (MQ=255)
cgcgGTAGTGGCGGGCTGGTGTACAGCACATTGAAc < 1:667143/36‑1 (MQ=25)
cgcgGTAGTGGCGGGCGAGGGTACAGCACATTGAAc < 1:5130302/36‑1 (MQ=255)
cgcgGTAGTGGCGGGCGAGGGTACAGCACATTGAAc < 1:1737914/36‑1 (MQ=255)
gcgGTAGTGGCGGGGGGGGGGGGAGCACAATGaaaa > 1:3816148/1‑34 (MQ=9)
cgGTAGTGGCGGGCGGGGGGACAGGACAATGAAAAg > 1:261073/1‑36 (MQ=16)
aGTGGCGGGCGAGGGTACAGCACATTGAACAGCGGa < 1:477321/36‑1 (MQ=255)
gTGGCGGGCGTGGGTACAGCCCATTGAACAGCGGAc > 1:1161171/1‑36 (MQ=37)
tGGCGGGCGAGGGTACAGCACATTGATCAGCGGAcc < 1:3865600/36‑1 (MQ=255)
tGGCGGGCGAGGGTACAGCACATTGAACAGCGGAcc > 1:5363078/1‑36 (MQ=255)
tGGCGGGCGAGGGTACAGCACATGGAACAGCGGAcc > 1:4334752/1‑36 (MQ=255)
gcgggcgAGGGTACAGCACATTGAACAGCGGACCAg < 1:4865052/36‑1 (MQ=255)
gcgggcgAGGGTACAGCACATTGAACAGCGGAACAg > 1:2175603/1‑36 (MQ=255)
gggcgAGGGTACAGCACATTGAACAGCGGCCCAGcc < 1:3714672/36‑2 (MQ=255)
gggcgAGGGTACAACACATTGAACAGCGGACCAGCa > 1:3108442/1‑36 (MQ=255)
gcgAGGGTACAGCACATTGAACAGCGGACCAGCAAc > 1:549268/1‑36 (MQ=255)
gcgAGGGTACAGCACATTGAACAGCGGACCAGCAAc > 1:5791935/1‑36 (MQ=255)
cgAGGGTACAGCACATTGAACAGCGGACCAGCAAcg > 1:5844205/1‑36 (MQ=255)
gAGGGTACAGCACATTGAACAGCGGACCAGCAAcgc > 1:1397868/1‑36 (MQ=255)
gAGGGTACAGCACATTGAACAGCGGACCAGCAAcgc < 1:5929570/36‑1 (MQ=255)
aGGGTACAGCACATTGAACAGCGGACCAGCAAcgcg > 1:4676462/1‑36 (MQ=255)
aGGGTACAGCACATTGAACAGCGGACCAGCAAcgcg > 1:3314733/1‑36 (MQ=255)
aGGGTACAGCACATTGAACAGCGGACCAGCAAcgcg > 1:3253904/1‑36 (MQ=255)
aGGGTACAGCACATTGAACAGCGGACCAGCAAcgcg < 1:5248322/36‑1 (MQ=255)
aGGGTACAGCACATTGAACAGCGGACCAGCAAcgcg < 1:1852567/36‑1 (MQ=255)
aGGGTACAGAACATTGAATAGCGGACCAGCAAcggg > 1:1657213/1‑34 (MQ=37)
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AAGTCGTGATCAGTCGCGGTAGTGGCGGGCGAGGGTACAGCACATTGAACAGCGGACCAGCAACGCG > REL606/1168107‑1168173
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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