Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,170,490 | T→A | 20.9% | F127L (TTT→TTA) | ygjR → | predicted NAD(P)‑binding dehydrogenase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,170,490 | 0 | T→A | 20.9% | 3.9 ‑4.5 0.0 | 34 | 381 | ygjR | predicted NAD(P)‑binding dehydrogenase |
Reads supporting (aligned to +/- strand): new base (0/8): ref base (14/12): total (14/20) | ||||||||||
Fisher's exact test strand distribution p-value = 1.09e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCGCGGGAAAATCAGGTGGTGCTGTTTGAGGCATTTAAAACCGCCTGCCTGCCGAACTTTCATTTGCTGCG > REL606/3170455‑3170525
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gcgcGGGAAAATCAGGTGGTGCTGTTTGAGGCAttt > 1:5147909/1‑36 (MQ=255)
gcgGGAAAATCAGGTGGTGCTGTTTGAGGCATTTaa > 1:4238163/1‑36 (MQ=255)
cgGGAAAATCAGGTGGTGCTGTTTGAGGCATTTaaa < 1:7771577/36‑1 (MQ=255)
cgGGAAAATCAGGTGGTGCTGTTTGAGGCATTTaaa < 1:7233674/36‑1 (MQ=255)
cgGGAAAATCAGGTGGTGCTGTTTGAGGCATTTaaa > 1:7630986/1‑36 (MQ=255)
gggAAAATCAGGTGGTGCTGTTTGAGGCATTTaaaa < 1:6240391/36‑1 (MQ=255)
gggAAAATCAGGTGGTGCTGTTTGAGGCATTTaaaa > 1:6727521/1‑36 (MQ=255)
gggAAAATCAGGTGGTGCTGTTTGAGGCATTTaaaa < 1:4151640/36‑1 (MQ=255)
ggAAAATCAGGTGGTGCTGTTTGAGGCATTTAAAAc > 1:5987960/1‑36 (MQ=255)
gAAAATCAGGTGGTGCTGTTTGAGGCATTTTAAAcc > 1:2006242/1‑36 (MQ=255)
gAAAATCAGGTGGTGCTGTTTGAGGCATTTAAAAcc < 1:7439082/36‑1 (MQ=255)
gAAAATCAGGTGGTGCTGTTTGAGGCATTTAAAAcc < 1:379564/36‑1 (MQ=255)
aTCAGGTGGTGCTGTTTGAGGCATTTAAAACCgcct < 1:2139146/36‑1 (MQ=255)
tCAGGTGGTGCTGTTTGAGGCATTTAAAACCgcctg > 1:4267816/1‑36 (MQ=255)
cAGGTGGTGCTGTTTGAGGCATTTAAAACCgcctgc > 1:3457992/1‑36 (MQ=255)
cAGGTGGTGCTGTTTGAGGCATTTAAAACCgcctgc > 1:7794141/1‑36 (MQ=255)
ggtggtGCTGTTTGAGGCATTTAAAACCgcctgcct > 1:4193738/1‑36 (MQ=255)
ggtggtGCTGTTTGAGGCATTTAAAACCgcctgcct > 1:5223581/1‑36 (MQ=255)
gtggtgCTGTTTGAGGCATTTAAAACCGcctgcctg < 1:5933204/36‑1 (MQ=255)
tggtgCTGTTTGAGGCATTTAAACCCGCctgcctgc < 1:3262325/36‑1 (MQ=255)
tggtgCTGTTTGAGGCATTTAAAACCGCctgcctgc > 1:1869776/1‑36 (MQ=255)
tggtgCTGTTTGAGGAATTAAAAACCGCctgcctgc < 1:1527450/36‑1 (MQ=37)
ggtgCTGTTTGAGGCATTTAAAACCGCCtgcctgcc < 1:7293320/36‑1 (MQ=255)
ggtgCTGTTTGAGGCATTTAAAACCGCCtgcctgcc < 1:1148860/36‑1 (MQ=255)
tttAAGGCTTATAAAACCGCCTTCCTGCCGAACttt < 1:754465/36‑1 (MQ=19)
ttGAGGCATTTAAAACCGCCTGCCTGCCGAACTTTc > 1:5081958/1‑36 (MQ=255)
tGAGGAATTAAAAACCGCCTGCCTGCCGAACTTTCa < 1:7689621/36‑1 (MQ=37)
gAGGCATTTAAAACCGCCTGCCTGCCGAACTTTCAt > 1:4617102/1‑36 (MQ=255)
agccATTAAAAACCGCCTGCCTGCCGAACTTTCAtt < 1:1206923/33‑1 (MQ=37)
aGGCATTAAAACCCGCCTGCCTGCCGAACTTTCAtt < 1:436644/36‑1 (MQ=38)
ggaaTTAAAACCCGCCTGCCTGCCGAACTTTCAttt < 1:5375251/33‑1 (MQ=37)
gCATTTAAAACCGCCTGCCTGCCGAACTTTCATTtg > 1:2640863/1‑36 (MQ=255)
aTTAAAACCCGCCTGCCTGCCGAACTTTCATTtgct < 1:3801180/36‑1 (MQ=38)
aTTAAAACCCGCCTGCCTGCCGAACTTTCATTtgct < 1:3404893/36‑1 (MQ=38)
aTTAAAAACCGCCTGCCTGCCGAACTTTCATTtgct < 1:597013/36‑1 (MQ=255)
tAAACCCGCCTGCCTGCCGAACTTTCATTTGCTgcg < 1:5108601/36‑1 (MQ=255)
tAAAACCGCCTGCCTGCCGAACTTTCATTTGCTgcg > 1:5995971/1‑36 (MQ=255)
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GCGCGGGAAAATCAGGTGGTGCTGTTTGAGGCATTTAAAACCGCCTGCCTGCCGAACTTTCATTTGCTGCG > REL606/3170455‑3170525
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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