New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 208645149 (0.950)6 (0.120) 4/60 NT 10.8% intergenic (‑872/‑673) yegL/yegM hypothetical protein/multidrug efflux system, subunit A
?REL606 2752961 = 50 (0.830)coding (1009/2562 nt) mutS DNA mismatch repair protein

TTTCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTATGACT  >  REL606/2086416‑2086485
                                   |                                  
tttCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCC                                    >  1:1786917‑M1/1‑36 (MQ=255)
tttCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCC                                    >  1:405556‑M1/1‑36 (MQ=255)
tttCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCC                                    <  1:6411408‑M1/36‑1 (MQ=255)
 ttCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGccc                                   >  1:2410485/1‑36 (MQ=38)
 ttCAGGAGTGAGGGTTGAGCATGGTTTCCCCCGccc                                   <  1:6251001/36‑1 (MQ=14)
  tCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCt                                  >  1:3205037/1‑36 (MQ=38)
   cAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTg                                 <  1:7541512/36‑1 (MQ=38)
   cAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTg                                 <  1:1957599/36‑1 (MQ=38)
   cAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTg                                 <  1:6007540/36‑1 (MQ=38)
    aGGAGTGAGGGTTGACCGGGGTTTCCCCCGCCCTgg                                >  1:1816808/1‑36 (MQ=255)
     ggAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGt                               <  1:666642/36‑1 (MQ=38)
     agAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGt                               <  1:970346/35‑1 (MQ=38)
      gAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTa                              <  1:5067780/36‑1 (MQ=38)
      gAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTa                              <  1:6819964/36‑1 (MQ=38)
      gAGTGAGGGTTGAGCGGGGTTTCCCCCGCACTGGTa                              >  1:838034/1‑36 (MQ=255)
       aGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTAg                             <  1:2892683/36‑1 (MQ=38)
       aGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTAg                             <  1:3914921/36‑1 (MQ=38)
        gTGAGTGTTGAGCGGGGTTTCCCCCGCCCTGGTAGt                            <  1:971831/36‑1 (MQ=255)
         ttaGGGTTGCGCGGGTTTTCCCCCGCCCTGGTAGTc                           <  1:3734063/34‑1 (MQ=14)
           aGGGTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCtt                         >  1:6113049/1‑36 (MQ=38)
            gggTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTa                        <  1:6570086/36‑1 (MQ=38)
            gggTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTa                        <  1:5427645/36‑1 (MQ=38)
             ggTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAg                       <  1:6504076/36‑1 (MQ=38)
              gTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGt                      <  1:5444727/36‑1 (MQ=38)
              gTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGt                      <  1:1663957/36‑1 (MQ=38)
              gTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGt                      <  1:3231317/36‑1 (MQ=38)
               ttGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTa                     <  1:5506920/36‑1 (MQ=35)
               ttGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTa                     >  1:485473/1‑36 (MQ=35)
                tGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTaa                    <  1:1789871/36‑1 (MQ=32)
                   gCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGcc                 <  1:6632152/36‑1 (MQ=32)
                   gCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGcc                 <  1:6390777/36‑1 (MQ=32)
                    cGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCg                <  1:7696869/36‑1 (MQ=35)
                    cGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCg                <  1:4841685/36‑1 (MQ=35)
                    cGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCg                <  1:3847364/36‑1 (MQ=35)
                     ggggTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCgg               >  1:918081/1‑36 (MQ=38)
                     ggggTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCgg               >  1:40865/1‑36 (MQ=38)
                     caggttTCCCCCGCCgggctacagccggtactgcgt               <  1:4121813‑M1/34‑22 (MQ=255)
                      gggTTTCCCCCGCCgggctacagccggtactgcgtc              <  1:5730296‑M1/36‑23 (MQ=255)
                      gggTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCggg              <  1:427528/36‑1 (MQ=38)
                      gggTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCggg              >  1:2317678/1‑36 (MQ=38)
                       ggTTTCCCCCGCCgggctacagccggtactgcgtca             <  1:7071798‑M1/36‑24 (MQ=255)
                          ttCCCCCGCCgggctccagccggtactgcgtcaggt          <  1:6039310‑M1/36‑27 (MQ=255)
                          ttCCCCCGCCCTGGTAGTCTTAGTAAGCCGGGAAGc          >  1:1815219/1‑36 (MQ=38)
                           tCCCCCGCCCTGGTAGTCTTAGTAAGCCGGGAAGCt         <  1:83056/36‑1 (MQ=38)
                            cccccGCCCTGGTAGTCTTAGTACGCCGTGAAGCtt        <  1:5362677/36‑1 (MQ=14)
                            cccccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCtt        <  1:3868266/36‑1 (MQ=38)
                            cccccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCtt        <  1:662215/36‑1 (MQ=38)
                            cccccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCtt        <  1:3951342/36‑1 (MQ=38)
                            cccccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCtt        >  1:4766135/1‑36 (MQ=38)
                             ccccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTa       <  1:6405253/36‑1 (MQ=38)
                              cccGCCgggctccagccggtactgcgtcaggtcggc      <  1:623969‑M1/36‑31 (MQ=255)
                              cccGCCgggcaacagccggtactgcgtcaggtcggc      <  1:1774682‑M1/36‑31 (MQ=255)
                              cccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTAt      <  1:7724507/36‑1 (MQ=38)
                              cccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTAt      <  1:2767681/36‑1 (MQ=38)
                              cccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTAt      <  1:4955753/36‑1 (MQ=38)
                               ccGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTATg     <  1:6662234/36‑1 (MQ=38)
                               ccGCACTGGTAGTCTTAGTAAGCCGGGAAGCTTATg     <  1:4351990/36‑1 (MQ=255)
                                cgcggggctacagccggtactgcgtcaggtcggcga    <  1:5317573‑M1/36‑33 (MQ=255)
                                cgccgggctacagccggtactgcgtcaggtcggcga    <  1:6351364‑M1/36‑33 (MQ=255)
                                cgccgggctacagccggtactgcgtcaggccggcga    >  1:6341761‑M1/1‑4 (MQ=255)
                                cGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTATGa    >  1:4769757/1‑36 (MQ=38)
                                 gccgggctacagccggtactgcgtcaggtcggcgac   >  1:2171012‑M1/1‑3 (MQ=255)
                                  ccgggctacagccggtactgcgtcaggtcggcgacc  >  1:3300918‑M1/1‑2 (MQ=255)
                                   |                                  
TTTCAGGAGTGAGGGTTGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTAAGCCGGGAAGCTTATGACT  >  REL606/2086416‑2086485

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG