New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2333536NA (NA)45 (0.740) 30/70 NT 52.9% noncoding (1441/1441 nt) ISRSO11 repeat region
?REL606 4415710 = 40 (0.660)coding (848/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

ATATAAACCGTCCAACATTATGGGGTCAGTTCA...................................  >  REL606/2333504‑2333536
.................................TTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCT  >  REL606/4415710‑4415744
                                                                    
ATATAAACCGTCCAACATTATGGGGTCAGTTCATTG                                  >  1:747583/1‑36 (MQ=38)
 TATAAACCGTCCAACATTATGGGGTCAGTTCATTGT                                 <  1:1513527/36‑1 (MQ=38)
  ATAAACCGTCCAACATTATGGGGTCAGTTCATTGTT                                <  1:7566017/36‑1 (MQ=38)
  ATAAACCGTCCAACATTATGGGGTCAGTTCATTGTT                                >  1:10284/1‑36 (MQ=38)
  ATAAACCGTCCAACATTATGGGGTCAGTTCATTGTT                                >  1:5155005/1‑36 (MQ=38)
  ATAAACCGTCCAACATTATGGGGTCAGTTCATTGTT                                <  1:5513434/36‑1 (MQ=38)
  ATAAACCGTCCAACATTATGGGGTCAGTTCATTGTT                                >  1:3668716/1‑36 (MQ=38)
    AAACCGTCCAACATTATGGGGTCAGTTCATTGTTGA                              <  1:6435919/36‑1 (MQ=38)
    AAACCGTCCAACATTATGGGGTCAGTTCATTGTTGA                              <  1:6583454/36‑1 (MQ=38)
    AAACCGTCCAACATTATGGGGTCAGTTCATTGTTGA                              >  1:7324920/1‑36 (MQ=38)
    AAACCGTCCAACATTATGGGGTCAGTTCATTGTTGA                              <  1:2187432/36‑1 (MQ=38)
     AACCGTCCAACATTATGGGGTCAGTTCATTGTTGAA                             >  1:3262614/1‑36 (MQ=38)
     AACCGTCCAACATTATGGGGTCAGTTCATTGTTGAA                             >  1:1503796/1‑36 (MQ=38)
     AACCGTCCAACATTATGGGGTCAGTTCATTGTTGAA                             <  1:1955429/36‑1 (MQ=38)
      ACCGTCCAACATTATGGGGTCAGTTCATTGTTGAAC                            >  1:3017148/1‑36 (MQ=38)
        CGTCCAACATTATGGGGTCAGTTCATTGTTGAACTG                          >  1:5221065/1‑36 (MQ=38)
          TCCAACATTATGGGGTCAGTTCATTGTTGAACTGTT                        <  1:2725900/36‑1 (MQ=38)
           CCAACATTATGGGGTCAGTTCATTGTTGAATTGTTC                       >  1:7378758/1‑36 (MQ=255)
           CCAACATTATGGGGTCAGTTCATTGTTGAACTGTTC                       >  1:3639146/1‑36 (MQ=38)
           CCAACATTATGGGGTCAGTTCATTGTTGAACTGTTC                       >  1:2133263/1‑36 (MQ=38)
            CAACATTATGGTGTCAGTTCATTGTTGAACTGTTCG                      <  1:4216836/36‑1 (MQ=255)
             AACATTATGGGGTCAGTTCATTGTTGAACTGTTCGT                     <  1:3489465/36‑1 (MQ=40)
             AACATTATGGGGTCAGTTCATTGTTGAACTGTTCGT                     >  1:4991975/1‑36 (MQ=40)
              ACATTATGGGGTCAGTTCATTGTTGAACTGTTCGTG                    <  1:3390569/36‑1 (MQ=255)
              ACATTATGGGGTCAGTTCATTGTTGAACTGTTCGTG                    <  1:1797768/36‑1 (MQ=255)
                ATTATGGGGTCAGTTCATTGTTGAACTGTTCGTGTT                  >  1:6555366/1‑36 (MQ=255)
                ATTATGGGGTCAGTTCATTGTTGAACTGTTCGTGTT                  <  1:7332265/36‑1 (MQ=255)
                 TTATGGGGTCAGTTCATTGTTGAACTGTTCGTGTTG                 >  1:191832/1‑36 (MQ=255)
                 TTATGGGGTCAGTTCATTGTTGAACTGTTCGTGTTG                 >  1:5770871/1‑36 (MQ=255)
                   ATGGGGTCAGTTCATTGTTGAACTGTTCGTGTTGGT               <  1:4651356/36‑1 (MQ=40)
                   ATGGGGTCAGTTCATTGTTGAACTGTTCGTGTTGGT               >  1:4504562/1‑36 (MQ=40)
                    TGGGGTCAGTTCATTGTTGAACTGTTCGTGTTGGTA              <  1:4878960/36‑1 (MQ=38)
                    TGGGGTCAGTTCATTGTTGAACTGTTCGTGTTGGTA              <  1:7235297/36‑1 (MQ=38)
                    TGGGGTCAGTTCATTGTTGAACTGTTCGTGTTGGTA              >  1:1336236/1‑36 (MQ=38)
                      GGGTCAGTTCATTGTTGAACTGTTCGTGTTGGTAGG            <  1:6847613/36‑1 (MQ=38)
                       GGTCAGTTCATTGTTGAACTGTTCGTGTTGGTAGGG           <  1:4299738/36‑1 (MQ=38)
                        GTCAGTTCATTGTTGAACTGTTCGTGTTGGTAGGGC          <  1:674958/36‑1 (MQ=38)
                        GTCAGTTCATTGTTGAACTGTTCGTGTTGGTAGGGC          <  1:102029/36‑1 (MQ=38)
                         gCAGTACATTGTTGAACTGTTCGTGTTGGTAGGGCT         <  1:2065446/35‑1 (MQ=38)
                          CAGTTCATTGTTGAACTGTTCGTGTTGGTAGGGCTG        <  1:2497315/36‑1 (MQ=38)
                           AGTTCATTGTTGAACTGTTCGTGTTGGTAGGGCTGC       >  1:6714583/1‑36 (MQ=38)
                           AGTTCATTGTTGAACTGTTCGTGTTGGTAGGGCTGC       >  1:6937113/1‑36 (MQ=38)
                             TTCATTGTTGAACTGTTCGTGTTGGTAGGGCTGCCT     <  1:4829627/36‑1 (MQ=35)
                                ATTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCT  >  1:5495282/1‑36 (MQ=1)
                                ATTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCT  >  1:4916574/1‑36 (MQ=1)
                                                                    
ATATAAACCGTCCAACATTATGGGGTCAGTTCA...................................  >  REL606/2333504‑2333536
.................................TTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCT  >  REL606/4415710‑4415744

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG