Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,370,728 | G→T | 17.0% | W151L (TGG→TTG) | ycjN → | predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,370,728 | 0 | G→T | 17.0% | 2.5 ‑4.8 ‑0.0 | 44 | 452 | ycjN | predicted sugar transporter subunit: periplasmic‑binding component of ABC superfamily |
Reads supporting (aligned to +/- strand): new base (6/2): ref base (8/28): total (14/30) | ||||||||||
Fisher's exact test strand distribution p-value = 7.97e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.60e-01 |
CGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTG > REL606/1370693‑1370763
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cGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTg < 1:1724601/36‑1 (MQ=255)
cGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTg < 1:3000347/36‑1 (MQ=255)
tgtTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTa < 1:722029/36‑1 (MQ=255)
ttCCTGTCAGCGCCTGGATTGGCGGTTTTTTGTAtt > 1:567519/1‑35 (MQ=21)
ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc < 1:7937113/36‑1 (MQ=255)
ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc < 1:1440249/36‑1 (MQ=255)
ttCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATc < 1:6065415/36‑1 (MQ=255)
ttCCTATCCGCGCCTGGATTTGCGGTATCTTGTATc < 1:1109462/36‑1 (MQ=19)
tCCTGTCAGCGCCTGGATTGGCGGTATTTGGTAttt > 1:1453252/1‑34 (MQ=38)
tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg < 1:6604662/36‑1 (MQ=255)
tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg < 1:3762920/36‑1 (MQ=255)
tCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCg < 1:2415258/36‑1 (MQ=255)
ccTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGc < 1:3589005/36‑1 (MQ=255)
cTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCa < 1:4298659/36‑1 (MQ=255)
tGTCAGCGCCTGGATTGGCGGTTTTTTGTATTGCaa > 1:4721549/1‑36 (MQ=16)
gTCAGCGCCTGGATTGGCGGTATCTGGTATCGCaaa > 1:6231101/1‑36 (MQ=255)
gTCAGCGCCTGGATTGGCGGTATCTGGTATCGCaaa < 1:1698551/36‑1 (MQ=255)
cAGCGCCTGGATTGGCGGTATTTGGTATCGCAAAGa > 1:2849650/1‑36 (MQ=255)
aGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGAt < 1:6041211/36‑1 (MQ=255)
aGCGCCTGGATTGGCGGGATTTTGTATTGCAAAAAt > 1:4834487/1‑36 (MQ=16)
cgcCTGGATTGGCGGTATCTGGTATCGCAAAGAtgt < 1:163761/36‑1 (MQ=255)
ccTGGATTGGCGGTATCTGGTATCGCAAAGATGTGc < 1:1451868/36‑1 (MQ=255)
ccTGGATTGGCGGTATCTGGTATCGCAAAGATGTGc < 1:6918983/36‑1 (MQ=255)
cTGGATTGGCGGTATCTTGTTTCTCCAAGATGTGCt > 1:6799639/1‑36 (MQ=16)
cTGGATTGGCGGTATCTTGTATCTCAAATGtgtgtt > 1:5405840/1‑34 (MQ=16)
cTGGATTGGCGGTATCTTGTATCGCAAAGATGTGCt < 1:6901402/36‑1 (MQ=255)
cTGGATTGGCGGGATTTTGTTTTGCAAAGAtgtggt > 1:4993292/1‑34 (MQ=9)
ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg < 1:973822/36‑1 (MQ=255)
ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg < 1:4459992/36‑1 (MQ=255)
ggATTGGCGGTATCTGGTATCGCAAAGATGTGCTgg < 1:2074181/36‑1 (MQ=255)
gcttGGCGGTATCTGGTATCGCAAAGATGTGCTGGc < 1:3933982/34‑1 (MQ=255)
aTTGGCGGTATCTGGTATCGCAAAGGTGTGCTGGCa < 1:2695546/36‑1 (MQ=255)
aTTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCa < 1:1142650/36‑1 (MQ=255)
aTTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCa < 1:3174528/36‑1 (MQ=255)
ttGGCGGTATCTGGTATCGCAAAGATGTGCTGGCaa < 1:6686057/36‑1 (MQ=255)
tGGCGGTATCTGGTATCGCAAAGATGTGCTGGCaaa < 1:2662251/36‑1 (MQ=255)
ggCGGTATCTGGTATCGCAAAGATGTGCTGGCaaaa > 1:4460940/1‑36 (MQ=255)
ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg < 1:2329337/36‑1 (MQ=255)
ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg < 1:2334591/36‑1 (MQ=255)
ggTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCg < 1:970860/36‑1 (MQ=255)
gTATCTGGTATCTCAAAGATGTGCTGGCAAAANNng > 1:2535149/1‑36 (MQ=37)
gTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCgg > 1:3876978/1‑36 (MQ=255)
aTCTGGTATCGCAAAGATGTGCTGGTAAAAGCgggc > 1:4330773/1‑35 (MQ=255)
aTCTGGTATCGCAAAGATGTGCTGGCAAAAGCgggg > 1:177373/1‑36 (MQ=255)
tGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCtt < 1:6552615/36‑1 (MQ=255)
tGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCtt < 1:7235631/36‑1 (MQ=255)
ggTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTg < 1:323655/36‑1 (MQ=255)
ggTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTg > 1:6057916/1‑36 (MQ=255)
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CGGTGTTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTG > REL606/1370693‑1370763
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|