Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,253,643 | +G | 6.1% | intergenic (‑157/‑251) | napF ← / → eco | ferredoxin‑type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA)/ecotin precursor |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,253,643 | 1 | .→G | 6.1% | 2.6 ‑2.7 ‑0.0 | 33 | intergenic (‑157/‑251) | napF/eco | ferredoxin‑type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA)/ecotin precursor |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (7/24): total (9/24) | ||||||||||
Fisher's exact test strand distribution p-value = 6.82e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.65e-01 |
GTAAAACCTGTAGCAGGATCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTCACA > REL606/2253613‑2253676
|
gTAAAACCTGTAGCAGGATCAAAAGAGTGGC.ggggg > 1:5390766/1‑34 (MQ=255)
aaaaCCTGTAGCAGGATCAAAAGAGTGGC.GGGAAGc < 1:6147739/36‑1 (MQ=255)
aaaaCCTGTAGCAGGATCAAAAGAGTGGC.GGGAAGc < 1:5732647/36‑1 (MQ=255)
aaaCCTGTAGCAGGATCAAAAGAGTGGC.GGGGAggg > 1:5038741/1‑34 (MQ=38)
aCCTGTAGCAGGATCAAAGGAGTCGC.GGGAAGCGTg < 1:4751570/36‑1 (MQ=37)
aCCTGTAGCAGGATCAAAAGAGTGGC.GGGAAGCGTg < 1:3226121/36‑1 (MQ=255)
ccTGTAGCAGGATCAAAAGAGTGGC.GGGAAGCGTgg < 1:7939384/36‑1 (MQ=255)
ctctAGCAGGGTCAAAAGAGTGGC.GGGAAGCGTGGc < 1:1234065/33‑1 (MQ=38)
tGTAGCAGGATCAAAAGAGTGGC.GGGGAGAGTgggg > 1:3198162/1‑34 (MQ=37)
gTAGCAGGATCAAAAGAGTGGC.GGGAAGCGTGGCaa < 1:1499316/36‑1 (MQ=255)
tAGCAGGATCAAAAGAGTGGC.GGGAAGCGTGGCaaa < 1:2363672/36‑1 (MQ=255)
aGCAGGATCAAAAGAGTGGC.GGGAAGCGTGGCaaaa < 1:7380922/36‑1 (MQ=255)
aGGATCAAAAGAGTGGC.GGGGAGGGGGGGaaaaaag > 1:525350/1‑34 (MQ=16)
aGGATCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACg < 1:576311/36‑1 (MQ=255)
ggATCAAAAGAGTGGCGGGGAAGGGGGGAaaaaaag > 1:5556268/1‑34 (MQ=12)
ggATCAAAAGAGAGGCGGGGAAGGGAGGGaaaaagg > 1:5137773/1‑34 (MQ=2)
gATCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACggg < 1:2831963/36‑1 (MQ=255)
gATCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACggg < 1:3938473/36‑1 (MQ=255)
gATCAAAAGAGTAAC.GGGAAGCGTGGCAAAAACggg < 1:6759277/36‑1 (MQ=37)
aTCAAAAGAGTGGC.GTGAATCTTGGCAAAAACGGGc < 1:2863248/36‑1 (MQ=21)
aTCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACGGGc < 1:6307025/36‑1 (MQ=255)
tCAAAAGAGTGGC.GGGAAGCGGGGCAAAAAAggggt > 1:7690411/1‑34 (MQ=25)
aaGAGTGGC.GGGGAGCGTGGGAAAAACGGGGttttt > 1:669359/1‑35 (MQ=25)
aaGAGTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTg < 1:64759/36‑1 (MQ=255)
aaGAGTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTg < 1:7395272/36‑1 (MQ=255)
agagTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGc < 1:2488083/36‑1 (MQ=255)
agagTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGc < 1:329048/36‑1 (MQ=255)
gTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTca < 1:1554190/36‑1 (MQ=255)
gTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTca < 1:5737606/36‑1 (MQ=255)
gTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTca < 1:5743550/36‑1 (MQ=255)
gTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTca < 1:2887881/36‑1 (MQ=255)
ggC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTcaca > 1:1933389/1‑36 (MQ=255)
ggC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTcaca < 1:5249617/36‑1 (MQ=255)
ggC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTcaca > 1:6766942/1‑36 (MQ=255)
|
GTAAAACCTGTAGCAGGATCAAAAGAGTGGC.GGGAAGCGTGGCAAAAACGGGCTTTTGCTCACA > REL606/2253613‑2253676
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 18 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|