Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 42,819 | A→G | 12.5% | pseudogene (158/885 nt) | caiB ← | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 42,819 | 0 | A→G | 12.5% | 2.1 ‑3.7 0.0 | 70 | pseudogene (158/885 nt) | caiB | crotonobetainyl‑CoA:carnitineCoA‑transferase; b0038_1 |
Reads supporting (aligned to +/- strand): new base (10/0): ref base (37/22): total (48/22) | ||||||||||
Fisher's exact test strand distribution p-value = 2.44e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGTCAGGCCAGAAAAGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTCAACATCACCGTTCTGA > REL606/42785‑42854
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ggTCAGGCCAGAAAAGTAATCGGCGGTATACGGGaa < 1:5169483/36‑1 (MQ=255)
ggTCAGGCCAGAAAAGTAATCGGCGGGATACGGGaa > 1:3617135/1‑36 (MQ=255)
gTCAGGCCAGAAAAGTAATCGGCGGGATACGGGGag > 1:6957672/1‑36 (MQ=37)
gTCAGGCCAGAAAAGTAATCGGCGGGATAAGGGGag > 1:3566850/1‑36 (MQ=25)
tCAGGCCAGAAAAGTAATCGGCGGTATTTGGGAtgg > 1:7557966/1‑36 (MQ=25)
cAGGCCAGAAAAGTAATCGGCGGTATACGGGGaggg > 1:1110264/1‑35 (MQ=255)
cAGGCCAGAAAAGTAATCGGCGGTATACGGGAaggg > 1:5523732/1‑35 (MQ=255)
cAGGCCAGAAAAGTAATCGGCGGTATACGGGAaggg > 1:7309080/1‑35 (MQ=255)
aGGCCAGAAAAGTAATCGGCGGTATACGGGGaggga > 1:3240494/1‑34 (MQ=37)
aGGCCAGAAAAGTAATCGGCGGTATACGGGGaggcg > 1:6356733/1‑35 (MQ=255)
aGGCCAGAAAAGAAATCGGCGGTGTAAGGGAaggga > 1:5056441/1‑34 (MQ=21)
ggCCAGAAAAGTAATCGGCGGTATACGGGAagggag > 1:7834122/1‑36 (MQ=255)
gCCAGAAAAGTAATCGGCGGTATTCCGGGgggcagg > 1:5013563/1‑36 (MQ=19)
gCCAGAAAAGTAATCGGCGGTATTAGGGAagggagg > 1:4749539/1‑36 (MQ=21)
gCCAGAAAAGTAATCGGCGGTATACGGGGaggcagg > 1:6717492/1‑36 (MQ=255)
gCCAGAAAAGTAATCGGCGGTATACGGGAaggcagg < 1:7165625/36‑1 (MQ=255)
gCCAGAAAAGTAATCGGCGGCATACGGGAagggagg > 1:622700/1‑36 (MQ=37)
ccAGAAAAGTAATCGGCGGTATACGGGAaggcaggc < 1:1849885/36‑1 (MQ=255)
ccAGAAAAGTAATCGGCGGTATAAGGGAagggaggg > 1:3443746/1‑35 (MQ=37)
cAGAAAAGTAATCGGCGGTATACGGGGagggaggga > 1:3595079/1‑34 (MQ=37)
cAGAAAAGTAATCGGCGGTATACGGGAagggaggga > 1:5092546/1‑34 (MQ=38)
cAGAAAAGTAATCGGCGGTATAAGGGGagggagggg > 1:2986510/1‑34 (MQ=25)
gAAAAGTAATCGGCGGTGTACGGGTCggctggcaag > 1:396123/1‑34 (MQ=16)
gAAAAGTAATCGGCGGTATCCGGGAAGGCAGGCAtt > 1:6726877/1‑36 (MQ=255)
gAAAAGTAATCGGCGGTATACGGGAAGGCAGGCAtt < 1:5710150/36‑1 (MQ=255)
gAAAAGTAATCGGCGGTATACGGGAAGGCAGGCAtt < 1:4463128/36‑1 (MQ=255)
aaaaGTAATCGGCGGTATACGGGAAGGCAGGCATTg < 1:1339706/36‑1 (MQ=255)
aaaaGTAATCGGCGGTATACGGGAAGGCAGGCATTg < 1:2833144/36‑1 (MQ=255)
aaaGTAATCGGCGGTGTATGGGGAGGGAGGGCTTgg > 1:4953082/1‑36 (MQ=255)
aaaGTAATCGGCGGTATACGGGAAGGGAGGCGTTgg > 1:1283224/1‑36 (MQ=38)
aaaGTAATCGGCGGTATAAGGGAAGGCAGGCATTgg > 1:1979955/1‑36 (MQ=255)
aaGTAATCGGCGGTATACGGGAAGGCAGGCATTGGc < 1:3267947/36‑1 (MQ=255)
aaGTAATCGGCGGTATACGGGAAGGCAGGCATTGGc < 1:4978870/36‑1 (MQ=255)
aaGTAATCGGCGGTATACGGGAAGGCAGGCATTGGc < 1:4691002/36‑1 (MQ=255)
gTAATCGGCGGTATACGGGAAGGGAGGCATTGGGTg > 1:531825/1‑36 (MQ=38)
gTAATCGGCGGTATACGGGAAGGCAGGCATTGGGTg > 1:2701976/1‑36 (MQ=255)
tAATCGGCGGTATACGGGAAGGCAGGAATTGGGTgg > 1:1086800/1‑36 (MQ=38)
gaTCGGCGGTATAGGGGAAGGCAGGCATTGGCTGGt < 1:1364007/35‑1 (MQ=255)
aaTCGGCGGTATACGGGAAGGCAGGCATTGGCTggg > 1:304829/1‑35 (MQ=255)
aTCGGCGTTATACGGGAAGGCAGGCATTGGCTGGTc < 1:2016068/36‑1 (MQ=255)
tCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTCa < 1:5419428/36‑1 (MQ=255)
cggaggTATACGGGAAGGCAGGCATTGGCTGGTCaa > 1:2825987/1‑36 (MQ=255)
ggcggTATACGGGAAGGCAGGCATTGGCTGGTGAAc > 1:457478/1‑36 (MQ=255)
ggcggTATACGGGAAGGCAGGCATTGGCTGGTCAAc < 1:4358042/36‑1 (MQ=255)
ggcggTATACGGGAAGGCAGGCATTGGCTGGTCAAc < 1:6559340/36‑1 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa < 1:866498/36‑1 (MQ=255)
gcggTATACGGGAAGGCAGGCATTGGCTGGTCAACa > 1:7042235/1‑36 (MQ=255)
cggTATACGGTAAGGCAGGCATTGGCTGGTCAACAt < 1:5951850/36‑1 (MQ=255)
gggataCGGGAAGGCAGGCATTGGCTGGGGAACATc > 1:4550854/4‑36 (MQ=25)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc > 1:833771/1‑36 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc > 1:3980314/1‑36 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAACATc < 1:4972483/36‑1 (MQ=255)
ggTATACGGGAAGGCAGGCATTGGCTGGTCAAAAtt > 1:4303708/1‑35 (MQ=255)
gTATACGGGAAGGCAGGCATTGGCTGGTCAACATCa > 1:4061460/1‑36 (MQ=255)
gTATACGGGAAGGCAGGCATTGGCTGGTCAACATCa > 1:6302271/1‑36 (MQ=255)
gTATACGGGAAGGCAGGCATTGGCTGGTCAACATCa > 1:6546386/1‑36 (MQ=255)
gTATACGGGAAGGCAGGCATTGGCTGGGCAACATCa > 1:1603639/1‑36 (MQ=255)
tataCGGGAAGGCAGGCATTGGCTGGTCAACATCAc > 1:2785202/1‑36 (MQ=255)
ataCGGGAAGGCAGGCATTGGCTGGTCAACATCAcc < 1:7600811/36‑1 (MQ=255)
taCGGGAAGGCAGGCATTGGCTGGTCAACATCACCg > 1:1804488/1‑36 (MQ=255)
taCGGGAAGGCAGGCATTGGCTGGGCAACATCACCg > 1:269000/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACATCACCGt > 1:6366540/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACATCACCGt < 1:752384/36‑1 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACATCAACGt > 1:6531864/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAACAGCACCGt > 1:1213297/1‑36 (MQ=255)
aCGGGAAGGCAGGCATTGGCTGGTCAAAATCACCGt > 1:5288364/1‑36 (MQ=255)
cGGGAAGGCAGGCATTGGCTGGTCAACATCACCGtt > 1:2661801/1‑36 (MQ=255)
cGGGAAGGCAGGCATTGGCTGGTCAACATCACCGtt < 1:5454397/36‑1 (MQ=255)
gggAAGGCAGGCATTGGCTGGTCAACATCTACGttt > 1:1776714/1‑35 (MQ=37)
gggAAGGCAGGCATTGGCTGGTCAACATCACCGTTc < 1:3653533/36‑1 (MQ=255)
ggAAGGCAGGCATTGGCTGGTCACCATCACCGTTCt < 1:4448531/36‑1 (MQ=255)
ggAAGGCAGGCATTGGCTGGTCAACATCACCGTTCt > 1:6628354/1‑36 (MQ=255)
aaGGCAGGCATTGGCTGGTCAACATCACCGTTCTGa < 1:4329447/36‑1 (MQ=255)
aaGGCAGGCATTGGCTGGTCAACATCACCGTTCTGa > 1:2227080/1‑36 (MQ=255)
aaGGCAGGCATTGGCTGGTCAACATCACCGTTCTGa < 1:7685716/36‑1 (MQ=255)
aaGGCAGGCATTGGCTGGGCAACATCACCCTTCTGa > 1:2304336/1‑36 (MQ=37)
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GGTCAGGCCAGAAAAGTAATCGGCGGTATACGGGAAGGCAGGCATTGGCTGGTCAACATCACCGTTCTGA > REL606/42785‑42854
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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