Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,739,309 | T→C | 15.8% | K102E (AAG→GAG) | hycF ← | formate hydrogenlyase complex iron‑sulfur protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,739,309 | 0 | T→C | 15.8% | 4.9 ‑3.8 ‑0.0 | 37 | 304 | hycF | formate hydrogenlyase complex iron‑sulfur protein |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (17/14): total (17/20) | ||||||||||
Fisher's exact test strand distribution p-value = 2.20e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.10e-01 |
GCGAAGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGCCAGTTCGTACTCTTGCGACAGTTTG > REL606/2739275‑2739343
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gcgAAGCGGGACTGTTGCAGGAAGTCTTCTttcttc > 1:4007773/1‑36 (MQ=255)
gcgAAGCGGGACTGTTGCAGGAAGTCTTCTttcttc > 1:2858453/1‑36 (MQ=255)
gcgAAGCGGGACTGTTGCAGGAAGTCTTCTttcttc < 1:7738190/36‑1 (MQ=255)
gcgAAGCGGGACTGTTGCAGGAAGTCTTCTttcttc > 1:7755921/1‑36 (MQ=255)
gcgAAGCGGGACTGTTGCAGGAAGTCTTCTttcttc < 1:1853309/36‑1 (MQ=255)
cgAAGCGGGACTGTTGCAGGAAGTCTTCTTTCTTcc < 1:977358/36‑1 (MQ=255)
gAAGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCca < 1:4753621/36‑1 (MQ=255)
gAAGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCca > 1:7834550/1‑36 (MQ=255)
aaGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCcac < 1:3539658/36‑1 (MQ=255)
aaGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCcac > 1:1581979/1‑36 (MQ=255)
aaGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCcac > 1:1850234/1‑36 (MQ=255)
aGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCcaca < 1:2260062/36‑1 (MQ=255)
gCGGGACTGTTGCAGGAAGTCTTCTTTCTTCCacac < 1:157936/36‑1 (MQ=255)
cGGGACTGTTGCAGGACGTCGTCTTTCTTCCACAcc > 1:2132504/1‑36 (MQ=37)
cGGGACTGTTGCAGGAAGTCTTCTTTCTTCCACAcc < 1:2233962/36‑1 (MQ=255)
gggACTGTTGCAGTAAGTCTTCTTTCTTCCACACCg > 1:3344873/1‑36 (MQ=255)
gggACTGTTGCAGGAAGTCTTCTTTCTTCCACACCg < 1:4418870/36‑1 (MQ=255)
ggACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGc > 1:5061896/1‑36 (MQ=255)
ggACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGc < 1:3423650/36‑1 (MQ=255)
ggACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGc < 1:3671942/36‑1 (MQ=255)
gACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGcc > 1:1388353/1‑36 (MQ=255)
gACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGcc < 1:3385539/36‑1 (MQ=255)
cTGTTGCAGGAAGTCTTCTTTCTTCCACACCGCCAg > 1:415746/1‑36 (MQ=255)
gTTGCAGGAAGTCTTCTTTCTTCCACACCGCCAGtt > 1:4813385/1‑36 (MQ=255)
gTTGCAGGAAGTCTTCTTTCTTCCACACCGCCAGtt > 1:3258839/1‑36 (MQ=255)
ttGCAGGAAGTCTTCTTTCTTCCACACCGCCAGTTc > 1:7456112/1‑36 (MQ=255)
ttGCAGGAAGTCTTCTTTCTTCCACACCGCCAGTTc > 1:1549579/1‑36 (MQ=255)
ttGCAGAAAGTCTTCTTTCTTCCACACCGCCAGTTc < 1:1066859/36‑1 (MQ=255)
gcgggAAGTCTTCTTTCTCCCACACCGCCAGTTCGt < 1:6363017/33‑1 (MQ=25)
gCAGGAAGTCTTCTTTCTTCCACACCGCCAGTTCGt < 1:7335279/36‑1 (MQ=255)
cAGGAAGTCTTCTTTCTTCCACACCGCAAGTTCGTa < 1:777773/36‑1 (MQ=255)
gggAAGTCTTCTTTCTCCCCCACCGCCAGTTCGTAc < 1:3020199/35‑1 (MQ=37)
gAAGTCTTCTTTCTTCCACACCGCCAGTTCGTActc > 1:2487071/1‑36 (MQ=255)
gAAGTCTTCTTTCTTCCACACCGCCAGTTCGTActc > 1:4646032/1‑36 (MQ=255)
gAAGTCTTCTTTCTTCAACACCGCCAGTTCGTActc > 1:2939086/1‑36 (MQ=255)
aaGTCTTCTTTCTCCCACACCGCCAGTTCGTActct < 1:3788233/36‑1 (MQ=255)
gTCTTCTTTCTTCCACACCGCCAGTTCGTACTCTTg > 1:605200/1‑36 (MQ=255)
ttttctttctCCCACACCGCCAGTTCGTACTCTTGc < 1:6725467/34‑1 (MQ=37)
tcttctTTCTCCCACACCGCCAGTTCGTACTCTTGc < 1:5139629/36‑1 (MQ=255)
tcttctTCCTCCCACACCGCCAGTTCGTACTCTTGc < 1:3973919/36‑1 (MQ=37)
cttcttTCTTCCACACCGCCAGTTCGTACTCTTGCg > 1:5687207/1‑36 (MQ=255)
ttctttctTCCACGCCGCCAGTTCGTACTCTTGCGa < 1:277675/36‑1 (MQ=255)
tcctttcttCCACACCGCCAGTTCGTACTCTTGCGa > 1:3832445/3‑36 (MQ=255)
tctttcttCCACACCCCCAGTTCGTACTCTTGCGAc > 1:938034/1‑36 (MQ=255)
ctttcccCCACACCGCCAGTTCGTACTCTTGCGACa < 1:4413839/36‑1 (MQ=37)
tttcttCCACACCGCCAGTTCGTACTCTTGCGACAg < 1:1501607/36‑1 (MQ=255)
ttcttcCACACCGCCAGTTCGTACTCTTGCGACAGt > 1:871804/1‑36 (MQ=255)
ttctccCACACCGCCAGTTCGTACTCTTGCGACAGt < 1:809353/36‑1 (MQ=255)
tcttcCACACCGCCAGTTCGTACTCTTGCGACAGtt > 1:3282423/1‑36 (MQ=255)
tcttcCACACCGCCAGTTCGTACTCTTGCGACAGtt > 1:2470207/1‑36 (MQ=255)
ttcCACACCGCCAGTTCGTACTCTTGCGACAGTTTg < 1:7636769/36‑1 (MQ=255)
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GCGAAGCGGGACTGTTGCAGGAAGTCTTCTTTCTTCCACACCGCCAGTTCGTACTCTTGCGACAGTTTG > REL606/2739275‑2739343
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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