Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 547,700 | Δ8,224 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 546959–547702 | 555923–555878 | 8177–8965 | 8 [7] | [0] 66 | [insB‑6]–[ECB_00513] | [insB‑6], insA‑6, nmpC, ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 555924 = | 0 (0.000) | 41 (1.030) | 27/62 | NT | 100% | coding (1209/2346 nt) | ECB_00513 | conserved hypothetical protein |
? | REL606 | = 2035093 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
ACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546923‑546963
|
accgaaaccgGCAATGACTCCAACTTATTGATAgtg > 1:3412957/1‑36 (MQ=255)
ccgaaaccgGTAATGACTCCAACTTATTGATAgtgt < 1:5870094/36‑1 (MQ=255)
cgaaaccgGTAATGACTCCAACTTATTGATAGTGtt < 1:2202507/36‑1 (MQ=255)
cgaaaccgGTAATGACTCCAACTTATTGATAGTGtt > 1:3963794/1‑36 (MQ=255)
gaaaccgGTAATGACTCCAACTTATTGATAGTGttt < 1:4815244/36‑1 (MQ=40)
aaaccgGTAATGACTCCAACTTATTGATAGTGtttt < 1:5491792/36‑1 (MQ=38)
aaccgGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:2729373/36‑1 (MQ=35)
aaccgGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:2784341/36‑1 (MQ=35)
|
ACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTA > REL606/546923‑546963
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|