Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,037,598 | +C | 10.0% | coding (1397/2061 nt) | ECB_02838 ← | GspD, hypothetical type II secretion protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,037,598 | 1 | .→C | 10.0% | 4.7 ‑2.7 ‑0.0 | 30 | coding (1397/2061 nt) | ECB_02838 | GspD, hypothetical type II secretion protein |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (17/10): total (17/13) | ||||||||||
Fisher's exact test strand distribution p-value = 7.04e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.71e-01 |
GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCAC > REL606/3037563‑3037632
|
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTaa > 1:5603246/1‑36 (MQ=255)
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTaa < 1:3173111/36‑1 (MQ=255)
gCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTaa > 1:7936567/1‑36 (MQ=255)
cGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.c < 1:781226/36‑1 (MQ=255)
ttGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc < 1:2031206/35‑1 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.ct > 1:3570532/1‑35 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc > 1:3060695/1‑36 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc < 1:7261109/36‑1 (MQ=255)
gTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.cc > 1:1172183/1‑36 (MQ=255)
tGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCg < 1:4468340/36‑1 (MQ=255)
tGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCg < 1:5844361/36‑1 (MQ=255)
gagaGCACGTTAGAGCTGGAGTCGTTTTTAA.CCGcc < 1:6839221/36‑1 (MQ=255)
agagCACGTTAGAGTTGGAGTCGTTTTTAA.CCGCCt < 1:7331458/36‑1 (MQ=255)
agagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCt < 1:1419044/36‑1 (MQ=255)
gagCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTg > 1:7528773/1‑36 (MQ=255)
aCGTTAGGGCTGGAGTCGTTTTTAA.CCGCCTGCAcc > 1:7160977/1‑36 (MQ=255)
aCGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCAcc > 1:83256/1‑36 (MQ=255)
aCGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCAcc > 1:6479151/1‑36 (MQ=255)
cGTTAGAGCTGGAGTTTTTTTAAA.CCGCCTGCACCa < 1:3434824/36‑1 (MQ=25)
cGTTAGAGCGGGAGTCTTTTTAAA.CCGCCTGCACCa < 1:1032492/36‑1 (MQ=37)
ttAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAgc > 1:220436/1‑36 (MQ=255)
ttAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAgc > 1:5504804/1‑36 (MQ=255)
agagCTGGAGTCGTTTTTAA.CCGCCTGCACCAgcgc > 1:6392106/1‑36 (MQ=255)
agCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCa > 1:7737602/1‑36 (MQ=255)
agCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCa > 1:426643/1‑36 (MQ=255)
agCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCa > 1:3502609/1‑36 (MQ=255)
gCTGGAGTCGTTTTTAA.GCCCACGCACCTGCGCCAt > 1:1361100/1‑36 (MQ=12)
cTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATc > 1:8048293/1‑36 (MQ=255)
cTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATc > 1:2166376/1‑36 (MQ=255)
tGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATcc > 1:975816/1‑36 (MQ=255)
gAGTCTTTTTTAC.CCGCCTGCACCAGCGCCATCCAg < 1:1655518/36‑1 (MQ=25)
aGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGt > 1:3497008/1‑36 (MQ=255)
tttttttaAA.CCGCCTGCACCAGCGCCATCCAGTCg < 1:1309023/33‑1 (MQ=37)
tttttttAACCCGCCTGCACCAGCGCCATCCAGTCg < 1:3523572/34‑1 (MQ=21)
gTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGcc > 1:2816589/1‑36 (MQ=255)
gTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGcc > 1:355297/1‑36 (MQ=255)
tttttAACCCGCCTGCACCAGCGCCATCCAGTCGcc < 1:5906692/36‑1 (MQ=25)
tttttAACCCGCCTGCACCAGCGCCATCCAGTCGcc < 1:4568119/36‑1 (MQ=25)
ttttaAC.CCGCCTGCACCAGCGCCATCCAGTCGCCt < 1:2183870/36‑1 (MQ=25)
aaa.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTca < 1:5368277/35‑1 (MQ=255)
aa.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTcac > 1:3974991/1‑36 (MQ=255)
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GCGTGGAGAGCACGTTAGAGCTGGAGTCGTTTTTAA.CCGCCTGCACCAGCGCCATCCAGTCGCCTTTCAC > REL606/3037563‑3037632
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|