Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,144,610 | C→T | 19.7% | A31T (GCA→ACA) | flgM ← | anti‑sigma factor for FliA (sigma 28) |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,144,610 | 0 | C→T | 19.7% | 2.3 ‑4.2 0.0 | 25 | 91 | flgM | anti‑sigma factor for FliA (sigma 28) |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (7/13): total (12/13) | ||||||||||
Fisher's exact test strand distribution p-value = 1.49e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTT > REL606/1144577‑1144645
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tCACACTGGTGCTGGTGGAGGCGGTTGTTTTTgccg < 1:6612119/36‑1 (MQ=255)
acacTGGTGCTGGTGGAGGCGGTTGTTTTTgccgcc < 1:7359714/36‑1 (MQ=255)
cacTGGTGCTGGTGGAGGCGGTTGTTTTTTTCGccc > 1:5142860/1‑36 (MQ=37)
tggtgctggtgGAGGCGGTTGTTTTTGCCGCCCGGc < 1:5450404/36‑1 (MQ=255)
gttgctggtgGGGGCGGTTGTTTTTGCCGCCCGGCt < 1:2384426/34‑1 (MQ=38)
gtgctggtgGAGGCGGTTTTTTTTTTCGCCCGGCTg > 1:7771085/1‑36 (MQ=25)
tgctggtgGAGGCGGTTGTTTTTTTTGCCCGGCTGt > 1:6128786/1‑36 (MQ=25)
tgctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGt < 1:2462796/36‑1 (MQ=255)
tgctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGt < 1:3752633/36‑1 (MQ=255)
gctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGtt < 1:6149016/36‑1 (MQ=255)
gctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGtt < 1:2379753/36‑1 (MQ=255)
ctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGTTc < 1:2807474/36‑1 (MQ=255)
tggtggAGGCGGTTTTTTTTTTCGCCCCGCTGtttt > 1:6753910/1‑34 (MQ=16)
ggtggAGGCGGTTTTTTTTTTCGCCCGGCTGttttt > 1:5592354/1‑33 (MQ=16)
ggAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTAc < 1:3450572/36‑1 (MQ=255)
ggCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCgg < 1:807683/36‑1 (MQ=255)
gCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGgc > 1:3697313/1‑36 (MQ=255)
gCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGgc < 1:254803/36‑1 (MQ=255)
gCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGgc < 1:623136/36‑1 (MQ=255)
ggTTGTTTTTGCCGCCCGGCTGTTCGTTACCGgcgg > 1:3925253/1‑35 (MQ=255)
gttgttTTTGCCGCCCGGCTGTTCGTTACCGGcgcg > 1:3928836/1‑36 (MQ=255)
gttgttTTTGCCGCCCGGCTGTTCGTTACCGGcgcg < 1:356639/36‑1 (MQ=255)
gttTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCa > 1:1482655/1‑36 (MQ=255)
tttttGCCGCCCGGCTGTTCGTTACCGGCGCGTCAg > 1:6596408/1‑36 (MQ=255)
ttttGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGt > 1:3713893/1‑36 (MQ=255)
ttGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTgg > 1:5213954/1‑36 (MQ=255)
tGCCGCCCGCCTGTTCGTTACCGGCGCGTCAGTGGt < 1:227908/36‑1 (MQ=255)
ccgccCGGCTGTTCGTTACCGGCGCGTCAGTGGttt < 1:4256094/36‑1 (MQ=255)
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TCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTACCGGCGCGTCAGTGGTTT > REL606/1144577‑1144645
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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