New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3995530 =46 (0.870)10 (0.190) 4/60 NT 17.7% coding (58/768 nt) ECB_03724 putative transcriptional regulator
?REL606 = 4141016 47 (0.760)coding (89/705 nt) yijC DNA‑binding transcriptional repressor

AGGTCATGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCG  >  REL606/3995496‑3995564
                                  |                                  
aGGTCATGGCAGCCGTTATAAACAGCATTAAGAAcc                                   >  1:5496345/1‑36 (MQ=255)
aGGTCATGACAGCCGTTATAAACAGCATTAAGAAcc                                   <  1:6587965/36‑1 (MQ=255)
  gTCATGGCAGCCGTTATAAACAGCATTAAGAACCGc                                 >  1:7090636/1‑36 (MQ=255)
   tCATGGCAGCCGTTATAAACAGCTTTAAGAAcccca                                >  1:5856310/1‑33 (MQ=37)
    cATGGCAGCCGTTATAAACAGCATTAAGAACCGCCa                               >  1:4645038/1‑36 (MQ=255)
    cATGGCAGCCGTTATAAACAGCATTAAGAACCGCCa                               >  1:398808/1‑36 (MQ=255)
    cATGGCAGCCGTTATAAACAGCATTAAGAACCGCCa                               >  1:2416428/1‑36 (MQ=255)
    cATGGCAGCCGTTATAAACAGCATTAAGAACCGCCa                               >  1:6351430/1‑36 (MQ=255)
      tGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGt                             >  1:7538489/1‑36 (MQ=255)
      tGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGt                             >  1:635852/1‑36 (MQ=255)
        gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                           >  1:2654352/1‑36 (MQ=255)
         cAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCa                          >  1:5754204/1‑36 (MQ=255)
          aGCCGTTATAAACAGCATTAAGAACCGCCATTCCAc                         >  1:7662114/1‑36 (MQ=255)
           gCCGTTATAAACAGCATTAAGAACCGCCAGTCCACg                        >  1:6501196/1‑36 (MQ=255)
           gCCGTTATAAACAGCATTAAGAACCGCCAGTCCACg                        >  1:3904536/1‑36 (MQ=255)
             cGTTATAAACAGCATTAAGAACCGCCAGTCCACGta                      >  1:5065556/1‑36 (MQ=255)
             cGTTATAAACAGCATTAAGAACCGCCAGTCCACGta                      >  1:1312644/1‑36 (MQ=255)
              gTTATAAACAGCATTAAGAACCGCCAGTCCACGtaa                     >  1:3666672/1‑36 (MQ=255)
              gTTATAAACAGCATTAAGAACCGCCAGTCCACGtaa                     >  1:8261400/1‑36 (MQ=255)
              gTTATAAACAGCATTAAGAACCGCCAGTACACGtaa                     >  1:8026078/1‑36 (MQ=255)
                tataAACAGCATTAAGAACCGCCAGTCCACGtaata                   >  1:2795376/1‑36 (MQ=255)
                tataAACAGCATTAAGAACCGCCAGTCCACGtaata                   >  1:7869242/1‑36 (MQ=255)
                  taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                 >  1:6397428/1‑36 (MQ=255)
                  taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                 >  1:3443790/1‑36 (MQ=255)
                   aaaCAGCATTAAGAACCGCCAGTCCACGTAATAACg                >  1:185798/1‑36 (MQ=255)
                     aaaaaaaaaaaacCCGCCAGTCCACGTAATAACGtt              >  1:3203353‑M1/14‑36 (MQ=255)
                     aaaaaaaaaaaacCCGCCAGTCCACGTAATAACGtt              >  1:6205237‑M1/14‑36 (MQ=255)
                     aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt              >  1:6735214/1‑36 (MQ=255)
                     aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt              >  1:7107717/1‑36 (MQ=255)
                     aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt              >  1:7332054/1‑36 (MQ=255)
                     aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt              >  1:13804/1‑36 (MQ=255)
                     aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt              >  1:926004/1‑36 (MQ=255)
                     aCAGCATTAAGAAACGCCAGTCCAAGCAATTACGtt              >  1:7194406/1‑36 (MQ=19)
                      aaaaaaaaaaacCCGCCAGTCCACGTAATAACGttt             >  1:3633073‑M1/13‑36 (MQ=255)
                      aaaaaaaaaaacCCGCCAGTCCACGTAATAACGttt             >  1:1408672‑M1/13‑36 (MQ=255)
                       aGCATTAAGAACCGCCAGTCCACGTAATAACGTTtg            >  1:1705787/1‑36 (MQ=255)
                       aGCATTAAGAACCGCCAGTCCACGTAATAACGTTtg            >  1:5508899/1‑36 (MQ=255)
                        gCATTAAGAACCGCCAGTCCACGTAATAACGTTtgt           >  1:2035497/1‑36 (MQ=255)
                         cATTAAGAACCGCCAGTCCACGTAATAACGTTtgtg          >  1:1041732/1‑36 (MQ=255)
                         cATTAAGAACCGCCAGTCCACGTAATAACGTTtgtg          >  1:811826/1‑36 (MQ=255)
                         cATTAAGAACCGCCAGTCCACGTAATAACGTTtgtg          >  1:3950821/1‑36 (MQ=255)
                         cATTAAGAACCGCCAGTCCACGTAATAACGTTtgtg          >  1:4384773/1‑36 (MQ=255)
                          aaaaaaccCCGCCAGTCCACGTAATAACGTTTGTgc         >  1:6322589‑M1/9‑36 (MQ=255)
                          aaaaaaacCCGCCAGTCCACGTAATAACGTTTGTgc         >  1:31253‑M1/9‑36 (MQ=255)
                          aTTAAGAACCGCCAGTCCACGTAATAACGTTTGTgc         >  1:3980583/1‑36 (MQ=255)
                          aTTAAGAACCGCCAGTCCACGTAATAACGTTTGTgc         >  1:8110461/1‑36 (MQ=255)
                           ttAAGAACCGCCAGCCCACGTAATAACGTTTGTgcg        >  1:6784102/1‑36 (MQ=255)
                            tAAGAACCGCCAGTCCACGTAATAACGTTTGTgcgc       >  1:6261784/1‑36 (MQ=255)
                            aaacacCCGCCAGTCCACGTAATAACGTTTGTgcgc       >  1:3196237‑M1/7‑36 (MQ=255)
                            aaaaaaCCGCCAGTCCACGTAATAACGTTTGTgcgc       >  1:7673818‑M1/7‑36 (MQ=255)
                              aGAACCGCCAGTCCACGTAATTACGTTTGTGAGCCt     >  1:2701589/1‑36 (MQ=37)
                              aGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCt     >  1:4594728/1‑36 (MQ=255)
                              aGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCt     >  1:2532412/1‑36 (MQ=255)
                                aaCAGCCAGTCCACGTAATAACGTTTGTGCGCCTg  >  1:6305673/1‑35 (MQ=255)
                                 tCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg  >  1:6704244‑M1/2‑36 (MQ=255)
                                 cCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg  >  1:3603617‑M1/2‑36 (MQ=255)
                                 cCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg  >  1:5758017‑M1/2‑36 (MQ=255)
                                  |                                  
AGGTCATGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCG  >  REL606/3995496‑3995564

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG