Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,733,647 | IS150 (–) +3 bp | 18.4% | coding (683‑685/1413 nt) | pykF → | pyruvate kinase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 588495 = | NA (NA) | 9 (0.180) | 9/62 | NT | 20.9% | noncoding (1/1977 nt) | IS150 | repeat region |
? | REL606 | 1733647 = | 34 (0.590) | coding (683/1413 nt) | pykF | pyruvate kinase | |||||
* | ? | REL606 | = 666130 | NA (NA) | 7 (0.130) | 7/68 | NT | 15.9% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 1733649 | 37 (0.640) | coding (685/1413 nt) | pykF | pyruvate kinase |
AACTGTCCAACTTTTTGGGGTCAGTACAT................................... > REL606/666103‑666130
............................TGTTGAGGCCTTCCTGGTTTTCGATTTTGGAGATGA < REL606/1733649‑1733614
AACTGTCCAACTTTTTGGGGTCAGTACATGTTGAGG < 1:5148641/36‑1 (MQ=255)
TGTCCAACTTTTTGGGGTCAGTACATGTTGAGGCCT > 1:3843735/1‑36 (MQ=255)
GTCCAACTTTTTGGGGTCAGTACATGTTGAGGCCTT < 1:1608468/36‑1 (MQ=255)
ACTTTTTGGGGTCAGTACATGTTGAGGCCTTCCTGG > 1:3884384/1‑36 (MQ=255)
TTTGGGGTCAGTACATGTTGAGGCCTTCCTGGTTTT > 1:2674145/1‑36 (MQ=255)
AGTACATGTTGAGGCCTTCCTGGTTTTCGATTTTGG > 1:7398551/1‑36 (MQ=255)
ATGTTGAGGCCTTCCTGGTTTTCGATTTTGGAGATG > 1:7228221/1‑36 (MQ=255)
AACTGTCCAACTTTTTGGGGTCAGTACAT................................... > REL606/666103‑666130
............................TGTTGAGGCCTTCCTGGTTTTCGATTTTGGAGATGA < REL606/1733649‑1733614
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|