New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)9 (0.160) 9/64 NT 16.7% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 45 (0.740)coding (573/1041 nt) ynjI predicted inner membrane protein

CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506
                                  |                                   
cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAc                                    >  1:4633436‑M1/1‑35 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAcc                                   >  1:1390265‑M1/1‑34 (MQ=255)
 gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAcc                                   >  1:5186289‑M1/1‑34 (MQ=255)
  tgtTTAACTGTCCAACTTTTTGGGGTCAGTACActc                                  <  1:402899‑M1/36‑4 (MQ=255)
  tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAccc                                  <  1:2416953/36‑1 (MQ=38)
   gtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCt                                 >  1:680297/1‑36 (MQ=38)
    tttAACTGTCCAACTTTTTGGGGTCAGTACAccatg                                <  1:272023‑M1/36‑6 (MQ=255)
    tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTg                                >  1:5530932/1‑36 (MQ=38)
     ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                               <  1:3558179/36‑1 (MQ=40)
     ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg                               <  1:4551201/36‑1 (MQ=40)
      tAACTGTCCAACTTTTTGGGGTCAGTACAccatgga                              >  1:2341896‑M1/1‑29 (MQ=255)
      tAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg                              >  1:3688927/1‑36 (MQ=255)
        aCTGTCCAACTTTTTGGGGTCAGTACAccatggagc                            <  1:6497576‑M1/36‑10 (MQ=255)
        aCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                            >  1:2309174/1‑36 (MQ=255)
        aCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc                            <  1:4108563/36‑1 (MQ=255)
          tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTg                          >  1:194171/1‑36 (MQ=255)
           gTCCAAC.TTTTGGGGTCAGTACACACTGGGGCTGcc                        >  1:7738049/1‑36 (MQ=18)
             ccAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa                       >  1:6436566/1‑36 (MQ=255)
              cAACTTTTTGGGGTCAGTACAcaatggagccaatac                      <  1:6076414‑M1/36‑16 (MQ=255)
              cAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc                      <  1:6170256/36‑1 (MQ=255)
               aaCTTTTTGGGGTCAGTACACACTGGGGCTGCCACt                     >  1:697562/1‑36 (MQ=255)
                aCTTTTTGGGGTCAGTACAccatggagccaatacct                    >  1:736943‑M1/1‑19 (MQ=255)
                aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTc                    >  1:5156189/1‑36 (MQ=255)
                aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTc                    <  1:6417077/36‑1 (MQ=255)
                 cTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc                   <  1:6571598/36‑1 (MQ=255)
                 cTTTTGGGGTTCAGTACACCCTGGGGCTGCCCCTcc                   <  1:3838009/36‑1 (MQ=21)
                  tttttGGGGTCAGTACAccatggagccaataccttt                  >  1:7079274‑M1/1‑17 (MQ=255)
                  tttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                  >  1:409804/1‑36 (MQ=255)
                  tttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                  <  1:3955213/36‑1 (MQ=255)
                  tttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                  >  1:2190996/1‑36 (MQ=255)
                  tttttGGGGTCAGTACACCCTGGGGCTGCCACTCCa                  >  1:2977715/1‑36 (MQ=255)
                    tttGGGGTAAGTACACCCTGGGGCTGCCACTCCaaa                <  1:1250543/36‑1 (MQ=255)
                      tGGGGTTAGTACACCCTGGGGCTGCCACTCCAAAcc              >  1:5771828/1‑36 (MQ=255)
                      tGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAcc              >  1:353354/1‑36 (MQ=255)
                       ggggTCAGTACAccatggagccaatacctttaaagc             >  1:998689‑M1/1‑12 (MQ=255)
                       ggggTCAGTACACCCTGGGGCTGCCACTCCAAAccc             >  1:849831/1‑36 (MQ=255)
                        gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCg            <  1:7150166/36‑1 (MQ=255)
                        gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCg            <  1:3564708/36‑1 (MQ=255)
                         ggTCAGTACTCCCTGGTGCTGCCACTCCAAACCCGa           <  1:2982557/36‑1 (MQ=37)
                         gctCATTACACCCTGGGGCTGCCACTCCAAACCCGa           <  1:4796553/34‑1 (MQ=37)
                          gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGaa          >  1:2559190/1‑36 (MQ=255)
                          gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGaa          <  1:6511513/36‑1 (MQ=255)
                          gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGaa          <  1:413640/36‑1 (MQ=255)
                           tCAGTACAccatggagccaatacctttaaagcaaac         >  1:1714812‑M1/1‑8 (MQ=255)
                           tCAGTACACCCTGGGGCTGCCACTCCAAACCCGAAc         <  1:4676473/36‑1 (MQ=255)
                            cAGTACAccatggagccaatacctttaaagcaaaca        <  1:7136026‑M1/36‑30 (MQ=255)
                            cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        >  1:6437477/1‑36 (MQ=255)
                            cAGTACACCCTGGGGCTGCCACTCCAAACCCGAACa        >  1:4306026/1‑36 (MQ=255)
                            aaGTACACCCTGGGGATGCCACTCCTAACCCGAACa        >  1:68847/2‑36 (MQ=37)
                             aGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa       >  1:7716513/1‑36 (MQ=255)
                             aGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa       <  1:1326164/36‑1 (MQ=255)
                              gTACACCCTGGGGCTGCCACTCCAAACCCGAACAAt      >  1:327241/1‑36 (MQ=255)
                               tACACCCTGGGGCTGCCACTCCAAACCCGAACAAtt     <  1:2786354/36‑1 (MQ=255)
                               tACACCCTGGGGCTGCCACTCCAAACCCGAACAAtt     >  1:7607311/1‑36 (MQ=255)
                                 cacCCTGGGGCTGCCACTCCAAACCCGAACAATTTg   <  1:6263942/36‑1 (MQ=255)
                                  accatggagccaatacctttaaagcaaacatggagg  <  1:7464069‑M1/36‑36 (MQ=255)
                                  accatggagccaatacctttaaagcaaacatggagg  <  1:2430691‑M1/36‑36 (MQ=255)
                                  accatggagccaatacctttaaagcaaacatggagg  >  1:1121642‑M1/1‑1 (MQ=255)
                                  acCCTGGGGCTGCCACTCCAAACCCGAACAATTTgg  >  1:7490522/1‑36 (MQ=255)
                                  acCCGGGGGCTGCCACTCCAAGCCCGAACAATTTgg  <  1:5963714/36‑1 (MQ=38)
                                  |                                   
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGG  >  REL606/590437‑590506

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG