New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 84006434 (0.600)6 (0.110) 5/64 NT 14.0% coding (566/747 nt) glnH glutamine ABC transporter periplasmic protein
?REL606 2842326 = 40 (0.650)intergenic (+24/+50) metV/amiC tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase

CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCA  >  REL606/2842291‑2842360
                                   |                                  
acctaccgctttgaactgaccgttaccggcggggtt                                    >  1:999222‑M2/36‑36 (MQ=255)
 ccccGCAACCAATTATTGAACACCCTAACGGGTGtt                                   >  1:6279977/1‑36 (MQ=255)
  cccGCAACCAATTATTGAACACCCTAACGGGTGttt                                  <  1:1168376/36‑1 (MQ=255)
  cccGCAACCAATTATTGAACACCCTAACGGGTGttt                                  <  1:6839664/36‑1 (MQ=255)
   taccgctttgaactgaccgttaccggcggggttttt                                 >  1:1118965‑M2/33‑36 (MQ=255)
   ccGCAACCAATTATTGAACACCCTAACGGGTGtttt                                 <  1:750776/36‑1 (MQ=255)
    cGCAACCAATTATTGAACACCCTAACGGGTGttttt                                <  1:1404614/36‑1 (MQ=255)
    cGCAACCAATTATTGAACACCCTAACGGGTGttttt                                <  1:8247528/36‑1 (MQ=255)
    cGCAACCAATTATTGAACACCCTAACGGGTGttttt                                >  1:3937170/1‑36 (MQ=255)
     gCAACCAATTATTGAACACCCTAACGGGTGtttttt                               <  1:7405878/36‑1 (MQ=255)
      cgctttgaactgaccgttaccggcgggttttgtttt                              >  1:4475910‑M2/30‑36 (MQ=255)
      cgctttgaactgaccgttaccggcggggtttttttt                              >  1:3018073‑M2/30‑36 (MQ=255)
      cAACCAATTATTGAACACCCTAACGGGTGttttttt                              <  1:173989/36‑1 (MQ=255)
       aaCCAATTATTGAACACCCTAACGGGTGTTTTTTTg                             <  1:7704847/36‑1 (MQ=255)
        aCCAATTATTGAACACCCTAACGGGTGTTTTTTTGt                            >  1:2447698/1‑36 (MQ=255)
         tttgaactgaccgttaccggcgggttTTTTTTTGtt                           >  1:4175816‑M2/27‑36 (MQ=255)
         ccAATTATTGAACACCCTAACGGGTGTTTTTTTGtt                           >  1:5678341/1‑36 (MQ=255)
          ttgaactgaccgttaccggcgggttTTTTTTTGttt                          >  1:7284419‑M2/26‑36 (MQ=255)
          cAATTATTGAACACCCTAACGGGTGTTTTTTTGttt                          <  1:5522018/36‑1 (MQ=255)
          cAATTATTGAACACCCTAACGGGTGTTTTTTTGttt                          >  1:4281411/1‑36 (MQ=255)
          cAATTATTGAACACCCTAACGGGTGTTTTTTTGttt                          >  1:4723050/1‑36 (MQ=255)
          cAATTATTGAACACCCTAACGGGTGTTTTTTTGttt                          >  1:8136116/1‑36 (MQ=255)
           aaTTATTGAACACCCTAACGGGTGTTTTTTTGTTTc                         >  1:2869477/1‑36 (MQ=255)
           aaTTATTGAACACCCTAACGGGTGTTTTTTTGTTTc                         <  1:5719469/36‑1 (MQ=255)
           aaTTATTGAACACCCTAACGGGTGTTTTTTTGTTTc                         >  1:5347703/1‑36 (MQ=255)
           aaTTATTGAACACCCTAACGGGTGTTTTTTTGTTTc                         <  1:2710614/36‑1 (MQ=255)
            attattGAACACCCTAACGGGTGTTTTTTTGTTTCt                        <  1:4664093/36‑1 (MQ=255)
              tattGAACACCCTAACGGGTGTTTTTTTGTTTCTgg                      <  1:1645519/36‑1 (MQ=255)
                 tGAACACCCTAACGGGTGTTTTTTTGTTTCTGTtct                   >  1:4362627/1‑36 (MQ=255)
                  gAACACCCTAACGGGTGTTTTTTTGTTTCTGGtctc                  >  1:8425049/1‑36 (MQ=255)
                  gAACACCCTAACGGGTGTTTTTTTGTTTCTGGtctc                  <  1:3848331/36‑1 (MQ=255)
                   aaCACCCTAACGGGTGTTTTTTTGTTTCTGGTCTcc                 <  1:1609824/36‑1 (MQ=255)
                   aaCACCCTAACGGGTGTTTTTTTGTTTCTGGTCTcc                 <  1:6758116/36‑1 (MQ=255)
                      acCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCAt              >  1:2777836/1‑36 (MQ=255)
                       cccTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATa             <  1:1976891/36‑1 (MQ=255)
                        ccTAACGGGTGTTTTTTTGTTTCTTGTCTCCCATaa            >  1:2846685/1‑36 (MQ=255)
                        ccTAACGGGTGTTTTTTTGTTTCTGGTCTACCATaa            >  1:1995568/1‑36 (MQ=255)
                         cTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaa           <  1:7378114/36‑1 (MQ=255)
                         cTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaa           <  1:1206568/36‑1 (MQ=255)
                         cTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaa           <  1:1209539/36‑1 (MQ=255)
                         cTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATaaa           >  1:4447137/1‑36 (MQ=255)
                            aCGGGTGTTTTTTTGTTTCTGGTCTCCCATaaaaaa        >  1:1418159/1‑36 (MQ=255)
                            aCGGGTGTTTTTTTGTTTCTGGTCTCCCATaaaaaa        <  1:1370979/36‑1 (MQ=255)
                             cGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAg       >  1:3699292/1‑36 (MQ=255)
                              gggTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAgc      >  1:3059091/1‑36 (MQ=255)
                                  gtTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCa  >  1:4164682/1‑36 (MQ=255)
                                   |                                  
CCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCA  >  REL606/2842291‑2842360

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG