Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,406,852 | G→T | 24.2% | G58C (GGC→TGC) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,406,852 | 0 | G→T | 24.2% | 4.1 ‑4.4 0.0 | 33 | 172 | dbpA | ATP‑dependent RNA helicase, specific for 23S rRNA |
Reads supporting (aligned to +/- strand): new base (9/0): ref base (12/12): total (21/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.22e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GGCGAAAACCGGCAGCGGCAAAACGGCGGCTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGTCGCTA > REL606/1406818‑1406887
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ggCGAAAACCGGCAGCGTCAAAACGGCGGCTTTTgg < 1:582232/36‑1 (MQ=255)
ggCGAAAACCGGCAGCGGCAAAACGGCGGCTTTTgg > 1:7436617/1‑36 (MQ=255)
ggCGAAAACCGGCAGCGGCAAAACGGCGGCCTTTgg > 1:1617598/1‑36 (MQ=255)
gCGAAAACCGGCAGCGGCAAAACGGCGGCTTTTGGc > 1:1393337/1‑36 (MQ=255)
gAAAACCGGCAGCGGCAAAACGGCGGGTTTTTGccc > 1:5351558/1‑35 (MQ=21)
aagaCCGGCAGCGGCAAAACGGCGGCTTTTGGCCTc < 1:4864917/33‑1 (MQ=255)
aaaaCCGGCAGCGGCAAAACGGCGGTTTTATGCCTc > 1:149931/1‑36 (MQ=18)
aCCGGCAGCGGCAAAACGGCGGCTTTTTGCCTCGGc > 1:5003047/1‑36 (MQ=255)
aCCGGCAGCGGCAAAACGGCGGCTTCTGGCCTCGGc < 1:2499715/36‑1 (MQ=255)
cGGCAGCGGCAAAACGGCGGCTTTTGGCCTCGGCtt < 1:6460559/36‑1 (MQ=255)
ggCAGCGGCAAAACGGCGGCTTTTTGCCGCGGATTg > 1:7905400/1‑36 (MQ=21)
ggCAGCGGCAAAACGGCGGCTTTTGGCCTCGGCTTg < 1:2432026/36‑1 (MQ=255)
ggCAGCGGCAAAACGGCGGCTTTTGGCCTCGGCTTg < 1:2129906/36‑1 (MQ=255)
gCAGCGGCAAAACGGCGGCTTTTTGCCTCGGCtttt > 1:2724529/1‑34 (MQ=37)
gCAGCGGCAAAACGGCGGCTTTTTGCCTCGGCTTGt > 1:5844583/1‑36 (MQ=255)
aGCGGCAAAACGGCNNNTTTTTGCCTCGGCTNNTTa > 1:7333375/1‑36 (MQ=21)
aGCGGCAAAACGGCGGCTTTTTGCCTCGGCTTTttc > 1:6795989/1‑35 (MQ=37)
aGCGGCAAAACGGCGGCTTTTTGCCTCGGCTTGttt > 1:2309685/1‑35 (MQ=255)
aGCGGCAAAACGGCGGCTTTTGGCCTCGGCTTTttt > 1:6873722/1‑35 (MQ=255)
gCGGCAAAACGGCGGCTTTTGGCCTCGGCTTGTTAc < 1:3934382/36‑1 (MQ=255)
gCGGCAAAACGGCGGCTTTTGGCCTCGGCTTGTTAc < 1:4022656/36‑1 (MQ=255)
ggCAAAACGGCGGCTTTTGGCCTCGGCTTGTTACat > 1:919553/1‑35 (MQ=255)
gCAAAACGGCGGCTTTTGGCCTCGGCTTTTTACAGc > 1:908059/1‑36 (MQ=255)
gCAAAACGGCGGCTTGTGGCCTCGGCTTGTTTCAGc > 1:318212/1‑36 (MQ=37)
cggcggCTTTTGGCCTCGGCTTGTTACAGCAAATTg < 1:7470432/36‑1 (MQ=255)
gcggcTTTTGGCCTCGGCTTGTTACAGCAAATTGAt > 1:1081861/1‑36 (MQ=255)
cggcTTTTGGCCTCGGCTTGTTACAGCAAATTGATg < 1:6843233/36‑1 (MQ=255)
gcTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCg > 1:326376/1‑36 (MQ=255)
cTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGt < 1:513510/36‑1 (MQ=255)
cTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGt < 1:4415163/36‑1 (MQ=255)
cTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGt > 1:7076380/1‑36 (MQ=255)
cTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGt > 1:3562299/1‑36 (MQ=255)
ttttGGCCTCGGCTTGTTACAGCAAATTGATGCGTc > 1:544319/1‑36 (MQ=255)
ttttGGCCTCGGCTTGTTACAGCAAATTGATGCGTc > 1:4632122/1‑36 (MQ=255)
ttGGCCTCGGCTTGTTACAGCAAATTGATGCGTCGc > 1:4699558/1‑36 (MQ=255)
tGGCCTCGGCTTGTTACAGCAAATTGATGCGTCGCt < 1:7884072/36‑1 (MQ=255)
ggCCTCGGCTTGTTACAGCAAATTGATGCGTCGCTa < 1:3404505/36‑1 (MQ=255)
ggCCTCGGCTTGTTACAGCAAATTGATGCGTCGCTa < 1:2371049/36‑1 (MQ=255)
ggCCTCGGCTTGTTACAGCAAATTGATGCGTCGCTa > 1:1235222/1‑36 (MQ=255)
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GGCGAAAACCGGCAGCGGCAAAACGGCGGCTTTTGGCCTCGGCTTGTTACAGCAAATTGATGCGTCGCTA > REL606/1406818‑1406887
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|