Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,654,362 | 0 | G→T | 7.8% | 0.2 ‑5.9 ‑0.0 | 77 | 1220 | clpB | protein disaggregation chaperone |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (7/0): ref base (28/42): total (35/42) | ||||||||||
Fisher's exact test strand distribution p-value = 2.80e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.90e-01 |
TACGACGATCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATCTGCATACGAATGCTGGATGCTGCTTC > REL606/2654327‑2654396
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tACGACGATCGAGTCGGTCGAGTTCTTCTGGTTTTg < 1:6922668/36‑1 (MQ=255)
acgacgATCGAGTCGGTCGAGTTCTTCTGGTTTTGa < 1:2367237/36‑1 (MQ=255)
acgacgATCGAGTCGGTCGAGTTCTTCTGGTTTTGa < 1:1707178/36‑1 (MQ=255)
cgacgaTCGAGTCGGTCGGGTTCTTCTGGTTTTTAg > 1:3481094/1‑36 (MQ=37)
cgacgaTCGAGTCGGTCGATTTCTTCTGGTTTTGAg < 1:7542130/36‑1 (MQ=255)
gacgaTCGCGTCGGTCGAGTTCTTCTGGTTTTGAGt < 1:1743422/36‑1 (MQ=255)
gacgaTCGAGTCGGTCGGGTTTTTCTGGTTTTTAGt > 1:1222188/1‑36 (MQ=25)
cgaTCGAGTCGGTCGCGTTTTTTTGGTTTTTATTCa > 1:4038996/1‑36 (MQ=16)
cgaTCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCa < 1:1554437/36‑1 (MQ=255)
cgaTCGAGTCGGTCGAAGTCTTGTGGTTTTGGGTCa > 1:1254269/1‑36 (MQ=255)
gaTCGAGTCGGTCGAGTTCTTTTTGTTTTTAGTCaa > 1:2721531/1‑36 (MQ=25)
gaTCGAGTCGGTCGAGTTCTTCTGGTTTTTTGTCaa > 1:6875798/1‑36 (MQ=37)
aTCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAAt > 1:7475946/1‑36 (MQ=255)
aTCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAAt < 1:5228882/36‑1 (MQ=255)
aTCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAAt < 1:1201747/36‑1 (MQ=255)
tCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATc < 1:3362217/36‑1 (MQ=255)
tCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATc < 1:4314810/36‑1 (MQ=255)
cGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATCt < 1:2219475/36‑1 (MQ=255)
cGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATCt > 1:4957924/1‑36 (MQ=255)
gAGTCGGTCGAGTTCTTCTTGTTTTTTGTCAATCtt > 1:3114052/1‑35 (MQ=25)
gAGTCGGTCGAGTTCTTCTTGTTTTTAGTCAATCTg > 1:3041884/1‑36 (MQ=38)
aGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATCTGc < 1:2078030/36‑1 (MQ=255)
aGTCGGTCGAATTCTTCTGGTTTTGAGTCAATCTGc < 1:4678159/36‑1 (MQ=255)
tcggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCAt > 1:5279198/1‑36 (MQ=255)
tcggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCAt < 1:5803341/36‑1 (MQ=255)
tcggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCAt < 1:666820/36‑1 (MQ=255)
tcggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCAt < 1:1050397/36‑1 (MQ=255)
cggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATa < 1:48614/36‑1 (MQ=255)
ggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATAc < 1:4854289/36‑1 (MQ=255)
ggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATAc < 1:2322758/36‑1 (MQ=255)
ggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATAc < 1:7576964/36‑1 (MQ=255)
ggtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATAc > 1:3031297/1‑36 (MQ=255)
gtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATACg > 1:4509236/1‑36 (MQ=255)
gtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATACg > 1:612387/1‑36 (MQ=255)
gtcgAGTTCTTCTGGTTTTGAGTCAATCTGCATACg > 1:7739776/1‑36 (MQ=255)
tcgAGTTCTTCTGGTTTTGAGTCAATCTGCATACGa > 1:3061350/1‑36 (MQ=255)
gAGTTCTTCTGGTTTTGAGTCAATCTGCATACGAAt > 1:5576481/1‑36 (MQ=255)
gAGTTCTTCTGGTTTTGAGTCAATCTGCATACGAAt < 1:5145173/36‑1 (MQ=255)
gAGTTCTTCTGGTTTTGAGTCAATCTGCATACGAAt < 1:3255227/36‑1 (MQ=255)
aGTTCTTCTGGTTTTGAGTCAATCTGCATACGAATg > 1:4255617/1‑36 (MQ=255)
aGTTCTTCTGGTTTTGAGTCAATCTGCATACGAATg > 1:541290/1‑36 (MQ=255)
gTTCTTCTGGTTTTGAGTCAATCTGCATACGAATGc < 1:4610887/36‑1 (MQ=255)
ttcttcTGGTTTTGAGTCAATCTGCATACGAATGCt > 1:711835/1‑36 (MQ=255)
ttcttcTGGTTTTGAGTCAATCTGCATACGAATGCt < 1:3510345/36‑1 (MQ=255)
ttcttcTGGTTTTGAGTCAATCTGCATACGAATGCt < 1:5977446/36‑1 (MQ=255)
ttcttcTGGTTTTGAGTCAATCTGCATACGAATGCt < 1:4669588/36‑1 (MQ=255)
tcttctGGTTTTGAGTCAATCTGCATGCGAATGATg > 1:5290174/1‑36 (MQ=38)
tcttctGGTTTTGAGTCAATCTGCATACGAATGCTg > 1:2894932/1‑36 (MQ=255)
cttctGGTTTTGAGGCAATGTGTATACGAATGCTgg > 1:952184/1‑36 (MQ=25)
ctGGTTTTGAGTCAATCTGCATACGAATGCTGGAtg < 1:1963078/36‑1 (MQ=255)
ctGGTTTTGAGTCAATCTGCATACGAATGCTGGAtg < 1:5141663/36‑1 (MQ=255)
tGGTTTTGAGTCAATCTGCATACGAATGCTGGAtgc < 1:1136104/36‑1 (MQ=255)
tGGTTTTGAGTCAATCTGCATACGAATGCTGGAtgc > 1:7835570/1‑36 (MQ=255)
ggTTTTGAGTCAATCTGCATACGAATGCTGGAtgct < 1:1123632/36‑1 (MQ=255)
ggTTTTGAGTCAATCTGCATACGAATGCTGGAtgct < 1:5802890/36‑1 (MQ=255)
ggTTTTGAGTCAATCTGCATACGAATGCTGGAtgct > 1:5659719/1‑36 (MQ=255)
ggTTTTGAGTCAATCTGCATACGAATGCTGGAtgct < 1:4819756/36‑1 (MQ=255)
ggTTTTGAGTCAATCTGCATACGAATGCTGGAtgct > 1:1366337/1‑36 (MQ=255)
gTTTTGAGTCAATCTGCATACGAATGCTGGAtgctg > 1:4837936/1‑36 (MQ=255)
gTTTTGAGTCAATCTGCATACGAATGCTGGAtgctg < 1:2827937/36‑1 (MQ=255)
gTTTTGAGTCAATCTGCATACGAATGCTGGAtgctg < 1:1166146/36‑1 (MQ=255)
gTTTTGAGTCAATCTGCATACGAATGCTGGAtgctg < 1:7849158/36‑1 (MQ=255)
ttttGAGTCAATCTGCATACGAATGCTGGAtgctgc > 1:3294925/1‑36 (MQ=255)
ttttGAGTCAATCTGCATACGAATGCTGGAtgctgc < 1:4847967/36‑1 (MQ=255)
ttttGAGTCAATCTGCATACGAATGCTGGAtgctgc > 1:1331525/1‑36 (MQ=255)
ttttGAGTCAATCTGCATACGAATGCTGGAtgctgc < 1:6573884/36‑1 (MQ=255)
ttttGAGTCAATCTGCATACGAATGCTGGAtgctgc < 1:1304394/36‑1 (MQ=255)
tttGAGTCAATCTGCATACGAATGCTGGATgctgct < 1:1912963/36‑1 (MQ=255)
tttGAGTCAATCTGCATACGAATGCTGGATgctgct > 1:6976945/1‑36 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt < 1:2770733/36‑1 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt > 1:3086083/1‑36 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt > 1:1952552/1‑36 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt < 1:1662928/36‑1 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt < 1:4903882/36‑1 (MQ=255)
ttGAGTCAATCTGCATACGAATGCTGGATGCTGCtt > 1:4859273/1‑36 (MQ=255)
tGAGTCAATCTGCATACGAATGCTGGATGCTGCTTc > 1:3389922/1‑36 (MQ=255)
tGAGTCAATCTGCATACGAATGCTGGATGCTGCTTc < 1:2311046/36‑1 (MQ=255)
tGAGTCAATCTGCATACGAATGCTGGATGCTGCTTc > 1:4880932/1‑36 (MQ=255)
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TACGACGATCGAGTCGGTCGAGTTCTTCTGGTTTTGAGTCAATCTGCATACGAATGCTGGATGCTGCTTC > REL606/2654327‑2654396
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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