Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3894997 | 3901930 | 6934 | 47 [4] | [2] 31 | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3894996 | NA (NA) | 29 (0.530) | 21/64 | NT | 93.5% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 2 (0.030) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................ > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > REL606/3901931‑3901963
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:3124728/36‑1 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:6676501/1‑36 (MQ=1)
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:4333004/1‑36 (MQ=1)
TAACTGTCCGACTTTTTGGGGTCAGTACAGGTTGCC < 1:2257480/36‑1 (MQ=255)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:6885048/36‑1 (MQ=38)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:4300724/36‑1 (MQ=38)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 1:3241439/1‑36 (MQ=38)
CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 1:1501402/36‑1 (MQ=38)
TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG > 1:5260205/1‑36 (MQ=38)
GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:7182572/36‑1 (MQ=38)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 1:3944526/36‑1 (MQ=38)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 1:2295320/1‑36 (MQ=38)
AACTTTTTGGGGTCAGTACAGGTTGCCCAGGCGACC > 1:5208128/1‑36 (MQ=255)
AACTTTTTCGGGTCAGTACAGGTTGCCCAGGTGACC > 1:2802335/1‑36 (MQ=255)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG > 1:1798994/1‑36 (MQ=38)
TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:2402067/36‑1 (MQ=40)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 1:5389028/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:5473568/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:5727704/36‑1 (MQ=255)
GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC < 1:7057901/36‑1 (MQ=255)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:2322056/36‑1 (MQ=255)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 1:7214063/1‑36 (MQ=255)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 1:1546030/36‑1 (MQ=255)
TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 1:3049105/36‑1 (MQ=255)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:633399/1‑36 (MQ=255)
CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA < 1:5746792/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:94320/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:2415721/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:2402568/36‑1 (MQ=255)
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................ > REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > REL606/3901931‑3901963
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|