New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1097109 =34 (0.740)5 (0.110) 4/52 NT 12.0% intergenic (+12/‑522) putP/ycdN proline:sodium symporter/putative membrane protein
?REL606 4079105 = 39 (0.630)coding (903/1035 nt) rhaT L‑rhamnose:proton symporter

CACTCTTTCAGCACCAGCCCGACGATACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTG  >  REL606/4079070‑4079138
                                   |                                 
cACTCTTTCACCACCAGCCCGACGATACCGCCGcac                                   <  1:5547929/36‑1 (MQ=255)
 cctctTCCAGCACCAGCCCGACGATACCGCCGcaca                                  <  1:8473627/35‑1 (MQ=255)
 aCTCTTTCAGCACCAGCCAGACGATACCGCCGcaca                                  >  1:5523539/1‑36 (MQ=255)
  ctctTTCAGCACCAGCCCGACGATACCGCCGCACaa                                 >  1:8462127/1‑36 (MQ=255)
   tctTTCAGCACCAGCCCGACGATACCGCCGCACAAt                                <  1:6394254/36‑1 (MQ=255)
   tctTCCAGCACCAGCCCGACGATACCGCCGCACAAt                                <  1:4841295/36‑1 (MQ=255)
    ctTTCAGCACCAGCCCGACGATACCGCCGCACAATa                               <  1:5663306/36‑1 (MQ=255)
    ctTCCAGCACCAGCCCGACAATACCGCCGCACAATa                               <  1:4808556/36‑1 (MQ=37)
     tttCAGCACCAGCCCGACGATACCGCCGCACAATAc                              <  1:6764542/36‑1 (MQ=255)
     tttCAGCACCAGCCCGACGATACCGCCGCACAATAc                              >  1:3676867/1‑36 (MQ=255)
     tttCAGCACCAGCCAGACGATACCGCCGCACAATAc                              <  1:8184004/36‑1 (MQ=255)
     tttCACCACCAGCCCGACGATACCGCCGCACAATAc                              <  1:5382089/36‑1 (MQ=255)
      ttCAGCACCAGCCCGACGATACCGCCGCACAATACa                             >  1:5124179/1‑36 (MQ=255)
      ttCAGCACCAGCCCGACGATACCGCCGCACAATACa                             >  1:66297/1‑36 (MQ=255)
      ttCAGCACCAGCCCGACGATACCGCCGCACAATACa                             >  1:3257627/1‑36 (MQ=255)
        caccACCACCCCGACGATACCGCCGCACAATACATa                           <  1:2734951/33‑1 (MQ=25)
        cAGCACCAGCCCGACAATACCGCCGCACAATACATa                           <  1:7387939/36‑1 (MQ=255)
           cACCAGCCCGACGATACCGCCGCACAATACATAGaa                        <  1:8457449/36‑1 (MQ=255)
            aCCAGCCCGACGACACCGCCGCCCAATACATAGaaa                       >  1:205507/1‑36 (MQ=37)
             ccAGCCCGACGATACCGCCGCACAATACATAGAAAc                      >  1:1398419/1‑36 (MQ=255)
              cAGCCCGACGATACCGCCGCACAATACATAGAAACt                     >  1:6018985/1‑36 (MQ=255)
              cAGCCCGACGATACCGCCGCACAATACATAGAAACt                     <  1:7082659/36‑1 (MQ=255)
              cAGCCCGACGATACCGCCGCACAATACATAGAAACt                     >  1:4551541/1‑36 (MQ=255)
               aGCCCGACGATACCGCCGCACAATACATAGAAACTc                    >  1:6138324/1‑36 (MQ=255)
               aGCCCGACGATACCGCCGCACAATACATAGAAACTc                    >  1:2527248/1‑36 (MQ=255)
                gCCCAACGATACCGCCGCACAATACATAGAAACTCa                   <  1:5509055/36‑1 (MQ=255)
                 cccGACGATACCGCAGAACAATACATAGAAACTCat                  >  1:6016120/1‑36 (MQ=37)
                  ccGACGATACCGCCGCACAATACATAGAAACTCata                 >  1:809264/1‑36 (MQ=255)
                  ccGACGATACCGCCGCACAATACATAGAAACTCata                 <  1:7618338/36‑1 (MQ=255)
                  ccGACGATACCGCCGCACAATACATAGAAACTCata                 >  1:4469180/1‑36 (MQ=255)
                  caaacaaaaccgccgcaCAATACATAGAAACTCata                 <  1:5423510‑M2/19‑1 (MQ=255)
                   caacaataccgccgcaCAATACATAGAAACTCatat                <  1:5706687‑M2/20‑1 (MQ=255)
                   agacaaTACCGCCGCACAATACATAGAAACTCatat                <  1:936787/35‑1 (MQ=255)
                    gacaaTACCGCCGCACAATACATAGAAACTCATATg               <  1:4977573/36‑1 (MQ=255)
                     acgaTACCGCCGCACAATACATAGAAACTCATATgc              >  1:4170963/1‑36 (MQ=255)
                     acgaTACCGCCGCACAATACATAGAAACTCATATgc              >  1:181852/1‑36 (MQ=255)
                     acgaTACCGCCGCACAATACATAGAAACTCATATgc              >  1:4922085/1‑36 (MQ=255)
                     acaaaaccgccgcaCAATACATAGAAACTCATATgc              <  1:3701377‑M2/22‑1 (MQ=255)
                      cgaTACCGCCGCACAATACATAGAAACTCATATgca             >  1:3446673/1‑36 (MQ=255)
                       gaTACCGCCGCACAATACATAGAAACTCATATgcag            >  1:4099079/1‑36 (MQ=255)
                       gaTACCGCCGCAAAATACATAGAAACTCATATgcag            <  1:7725020/36‑1 (MQ=255)
                        aaaccgccgcaCAATACATAGAAACTCATATgcagc           <  1:6755612‑M2/25‑1 (MQ=255)
                        aTACCGCCGCACAATACATAGAAACTCATATgcagc           <  1:2725136/36‑1 (MQ=255)
                         tACCGCCGCACAATACATAGAAACTCATATgcagca          >  1:7119525/1‑36 (MQ=255)
                         aaccgccgcaCAATACATAGAAACTCATATgcagca          <  1:6486042‑M2/26‑1 (MQ=255)
                          accgccgcaCAATACATAGAAACTCATATGCAGCAt         <  1:5532368‑M2/27‑1 (MQ=255)
                           ccgccgcaCAATACATAGAAACTCATATGCAGCATc        >  1:6969067‑M2/9‑36 (MQ=255)
                             gccgcaCAATACATAGAAACTCATATGCAGCATCCa      >  1:7277982‑M2/7‑36 (MQ=255)
                             gccgcaCAATACATAGAAACTCATATGCAGCATCCa      >  1:370605‑M2/7‑36 (MQ=255)
                             gccgcaCAATACATAGAAACTCATATGCAGCATCCa      >  1:3793678‑M2/7‑36 (MQ=255)
                              ccgcaCAATACATAGAAACTCATATGCAGCATCCaa     >  1:1900368‑M2/6‑36 (MQ=255)
                               cgcaCAATACATAGAAACTCATATGCAGCATCCAAc    >  1:3354041‑M2/5‑36 (MQ=255)
                               cgcaCAATACATAGAAACTCATATGCAGCATCCAAc    >  1:2339805‑M2/5‑36 (MQ=255)
                                gcaCAATACATAGAAACTCATATGCAGCATCCAACt   <  1:2446797‑M2/33‑1 (MQ=255)
                                gcaCAATACATAGAAACTCATATGCAGCATCCAACt   >  1:8006092‑M2/4‑36 (MQ=255)
                                gcaCAATACATAGAAACTCATATGCAGCATCCAACt   <  1:2194534‑M2/33‑1 (MQ=255)
                                 caCAATACATAGAAACTCATATGCAGCATCCAACTg  <  1:4557658‑M2/34‑1 (MQ=255)
                                 aaCAATACATAGAAACTCATATGCAGCATCCAACTg  <  1:7882973‑M2/34‑1 (MQ=255)
                                   |                                 
CACTCTTTCAGCACCAGCCCGACGATACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTG  >  REL606/4079070‑4079138

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG