Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,447,637 +T 10.0% coding (78/897 nt) ynbB → predicted CDP‑diglyceride synthase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6061,447,6371.→T10.0% 5.3 ‑2.9 ‑0.220coding (78/897 nt)ynbBpredicted CDP‑diglyceride synthase
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (3/15):  total (5/15)
Fisher's exact test strand distribution p-value = 5.26e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.80e-01

TTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACG  >  REL606/1447602‑1447672
                                    |                                   
ttAGCAACGCTGATAAACCGTTTTCTGCTATGGCgg                                      >  1:5771705/1‑36 (MQ=255)
  aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt                                   >  1:7323588/1‑36 (MQ=255)
  aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt                                   <  1:6631559/36‑1 (MQ=255)
  aGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.tt                                   <  1:510172/36‑1 (MQ=255)
  aGCAACGCTGATAAACCGTTTTCTGATATGGCGG.tt                                   >  1:6936664/1‑36 (MQ=255)
   gCAACGCTGATAAACCGTTTTCTGCTATGGCgggtg                                   >  1:3978857/1‑33 (MQ=255)
   gCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTa                                  <  1:1019930/36‑1 (MQ=255)
    cAACGCTGATAAACCGTTTTCTGCTATGGCGG.ttgt                                 >  1:7847479/1‑34 (MQ=255)
     aaCGCTGATAAACCGTTTTCTGCTATGGCGG.TTTcc                                >  1:4582611/1‑36 (MQ=255)
      aCGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCg                               <  1:5052229/36‑1 (MQ=255)
       cGCTGATAAACCTTTTTCTGCTATGGCGG.TTACCgg                              <  1:2516243/36‑1 (MQ=255)
         cTGATAAACCGTTTTCTGCTATGGCGG.TTACCGgag                            <  1:6034378/36‑1 (MQ=255)
                   gTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAgggg                  <  1:3646028/36‑1 (MQ=255)
                    ttttCTGCTATGGCGG.TTACCGGAGAGAAAAggggg                 <  1:6342922/36‑1 (MQ=255)
                     tttCTGCTATGGCGG.TTTCCGGGGGGGAAAgggggg                >  1:7219923/1‑35 (MQ=16)
                     tttCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGt                <  1:6699163/36‑1 (MQ=255)
                       tCTGCTATGGCGGTTTTCGGGGGGGAAAAggggggg               >  1:7447308/1‑34 (MQ=255)
                       tCTGCTATGGCGGTTTCCCGGGGGGAAAAggggggg               >  1:2122747/1‑34 (MQ=9)
                          gCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGt           <  1:148782/36‑1 (MQ=255)
                          gCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGt           <  1:5426079/36‑1 (MQ=255)
                           cTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGtt          <  1:4752481/36‑1 (MQ=255)
                            tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa         <  1:6596090/36‑1 (MQ=255)
                            tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa         <  1:263324/36‑1 (MQ=255)
                            tATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTa         <  1:3389175/36‑1 (MQ=255)
                               ggCGG.TTACCGGTGAGGAAAGGGGGGGAGGTTACAt      >  1:6745720/1‑36 (MQ=25)
                                gCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACAtt     <  1:6543758/36‑1 (MQ=255)
                                 cGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTa    <  1:7224170/36‑1 (MQ=255)
                                  gg.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTAc   <  1:451488/36‑1 (MQ=255)
                                   g.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACg  <  1:3402418/36‑1 (MQ=255)
                                    |                                   
TTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGG.TTACCGGAGAGAAAAGGGGGTGAGGTTACATTACG  >  REL606/1447602‑1447672

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG