New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1241529 =22 (0.460)4 (0.080) 3/56 NT 16.0% coding (693/1737 nt) ycgO potassium/proton antiporter
?REL606 = 2574504 20 (0.330)intergenic (+346/+472) sseA/sseB 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate

GTAAATTCACTTTCCTTTAAAAAACAAAAAACCGCCA.AAATCAGGCGGTTTTTTGTTGCTGGTCC  >  REL606/2574475‑2574539
                             |                                    
gTAAATTCACTTTCCTTTAAAAAACAAAAAACCGCC                                >  1:2782420‑M1/1‑36 (MQ=255)
  aaaTTCACTTTCATTAAAAAAAAAAAAAACCGCCa.a                             <  1:119869/36‑1 (MQ=25)
    aTTCACTTTCCTTTAAAAAACAAAAAACAGCCa.aaa                           >  1:6212548/1‑36 (MQ=255)
          tttCCTTTAAAAAACAAAAAACCGCCA.AAATCAGGc                     >  1:3532640/1‑36 (MQ=255)
              cTTTAAAAAACAAAAAACCGCCA.AAATCAGGCGGtt                 >  1:6674447/1‑36 (MQ=255)
               tttAAAAAACAAAAAACCGCCA.AAATCAGGCGGttt                >  1:403742/1‑36 (MQ=255)
               tttAAAAAACAAAAAACCGCCA.AAATCAGGCGGttt                >  1:3603499/1‑36 (MQ=255)
                ttAAAAAACAAAAAACCGCCA.AAATCAGGCGGtttt               >  1:4244434/1‑36 (MQ=255)
                ttAAAAAACAAAAAACCGCCA.AAATCAGGCGGtttt               >  1:3434321/1‑36 (MQ=255)
                attaaaaaaaaaaaacCGCCA.AATTC.GGCGGttttt              <  1:7642955/33‑1 (MQ=17)
                  aaaaaaaaaaaaaccgccacttaatgccagcaatgg              >  1:643491‑M2/1‑12 (MQ=255)
                  aaaaaaaaaaaaacCGCCAgcagaaacttgtgctaa              <  1:5743810‑M1/36‑18 (MQ=255)
                  aaaaaaaaaaaaacCGCCA.AATTC.GGCGGtttttta            <  1:1705625/36‑2 (MQ=17)
                  aaaaaaaaaaaaacCGCCA.AAATCAGGCGGtttttt             <  1:1193192/36‑1 (MQ=255)
                   aaaaaaaaaaaacCTCCA.AAATCAGGCGGTTTTttg            <  1:6652018/36‑1 (MQ=25)
                   aaaaaaaaaaaacCGCCAgcagaaacttgtgctaag             <  1:4104177‑M1/36‑19 (MQ=255)
                    aaaacaaaaaacCGACA.AAATCAGGCGGtttttttt           >  1:2141702/1‑34 (MQ=37)
                    aaaaaaaaaaaccgccacttaatgccagcaatggat            >  1:3870186‑M2/1‑10 (MQ=255)
                    aaaaaaaaaaaccgccacttaatgccagcaatggat            >  1:1434787‑M2/1‑10 (MQ=255)
                    aaaaaaaaaaacCGCCAgcagaaacttgtgctaagg            <  1:5339383‑M1/36‑20 (MQ=255)
                    aaaaaaaaaaacCGCCA.AAATCAGGCGGTTTTttgt           <  1:2916755/36‑1 (MQ=255)
                     aaaaaaaaaacCGCCAtagaaaggaccaaagaatga           <  1:6178424‑M1/36‑21 (MQ=255)
                      acaaaaaaaccgcCAtagaaaggaccaaagaatgac          <  1:4472496‑M1/33‑22 (MQ=255)
                      aacaaaaaacCGCCA.AAATCAGGCGGTTTTttgttg         >  1:5296552/1‑36 (MQ=255)
                       ataaaaaaccgCCAtagaaaggaccaaagaatgaca         <  1:6503580‑M1/34‑23 (MQ=255)
                       acaaaaaacCGCCA.AAATCAGGCGGTGTTttttttc        >  1:899079/1‑34 (MQ=21)
                       aaaaaaaaccgCCAtagaaaggaccaaagaatgaca         <  1:5330331‑M1/34‑23 (MQ=255)
                       aaaaaaaaccgCCAgcagaaacttgtgctaaggatt         <  1:4115681‑M1/34‑23 (MQ=255)
                       aaaaaaaacCGCCAGTAAACCGGCGGTGTAttgttg         >  1:7640553/3‑36 (MQ=25)
                        aaaacaaccGCCAtagaaaggaccaaagaatgacac        <  1:4552154‑M1/35‑24 (MQ=255)
                         aaaaaccCGCCA.AAATCAGGCGGTTTTTTGTTGCTg      <  1:3215682/36‑1 (MQ=255)
                         aaaaaacCGCCAtagaaaggaccaaagaatgacact       <  1:6044528‑M1/36‑25 (MQ=255)
                         aaaaaacCGCCAgcagaaacttgtgctaaggatttc       <  1:6882549‑M1/36‑25 (MQ=255)
                          aaaaaccgccacttaatgccagcaatggatataatc      >  1:7910257‑M2/1‑4 (MQ=255)
                          aaaaacCGCCAtagaaaggaccaaagaatgacactt      <  1:820405‑M1/36‑26 (MQ=255)
                          aaaaacCGCCA.AAATCAGGCGGTTTTTTGTTTCttg     >  1:5133876/1‑34 (MQ=25)
                           aaaccCGCCAtagaaaggaccaaagaatgacacttt     <  1:4291462‑M1/36‑27 (MQ=255)
                           aaaacCGCCAgcagaaacttgtgctaaggatttctt     <  1:1599010‑M1/36‑27 (MQ=255)
                           aaaacCGACAtagaaaggaccaaagaatgacacttt     <  1:5449419‑M1/36‑27 (MQ=255)
                            aaacCGCCAtagaaaggaccaaagaatgacactttc    <  1:3650358‑M1/36‑28 (MQ=255)
                            aaacCGCCAtagaaaggaccaaagaatgacactttc    <  1:4397841‑M1/36‑28 (MQ=255)
                            aaacCGCCA.AAATCAGGCGGTTTTTTGTTGCTGGTc   >  1:2464715/1‑36 (MQ=255)
                             aacCGCCAtagaaaggaccaaagaatgacactttca   >  1:7642074‑M1/1‑8 (MQ=255)
                             aacCGCCAtagaaaggaccaaagaatgacactttca   >  1:217015‑M1/1‑8 (MQ=255)
                             aacCGCCAtagaaaggaccaaagaatgacactttca   >  1:5404714‑M1/1‑8 (MQ=255)
                             aacCGCCAtagaaaggaacaaagaatgacactttca   >  1:580295‑M1/1‑8 (MQ=255)
                             aacCGCCA.AAATCAGGCGGTTTTTTTTTTCTTGTcc  >  1:4951115/1‑36 (MQ=21)
                             aacCGCCA.AAATCAGGCGGTTTTTTTTTGCTGTTca  >  1:758734/1‑35 (MQ=21)
                             aacCGCCA.AAATCAGGCGGTTTTTTGTTTCTGGTcc  >  1:2919651/1‑36 (MQ=255)
                             |                                    
GTAAATTCACTTTCCTTTAAAAAACAAAAAACCGCCA.AAATCAGGCGGTTTTTTGTTGCTGGTCC  >  REL606/2574475‑2574539

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 17 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG