Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,269,645 | 0 | T→A | 6.7% | 1.1 ‑4.4 ‑0.0 | 87 | 702 | ispB | octaprenyl diphosphate synthase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/7): ref base (43/36): total (44/43) | ||||||||||
Fisher's exact test strand distribution p-value = 1.20e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.82e-01 |
TTAGGTAAAAACGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATC > REL606/3269610‑3269679
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ttAAGTAAAAACGTCGGCGACGATCTGAACGAAGGt < 1:6699101/36‑1 (MQ=255)
tAGGTAAAAACGTCGGCGACGATCTGAACGAAGGTa < 1:3431725/36‑1 (MQ=255)
tAGGTAAAAACGTCGGCGACCATCTGAACGAAGGTa > 1:5781492/1‑36 (MQ=255)
aGGTAAAAACGTCGGCGACGATCTGAACGAAGGTaa < 1:117813/36‑1 (MQ=255)
aGGTAAAAACGTCGGCGACGATCTGAACGAAGGTaa > 1:6056095/1‑36 (MQ=255)
aGGTAAAAACGTCGGCGACGATCTGAACGAAGGTaa > 1:2437896/1‑36 (MQ=255)
ggTAAAAACGTCGGCGACGATCTGAACGAAGGTaaa < 1:1367763/36‑1 (MQ=255)
ggTAAAAACGTCGGCGACGATCTGAACGAAGGTaaa < 1:6021263/36‑1 (MQ=255)
gTAAAAATGGCGGCGCAGATCTGAACGAAGGTAAAc < 1:4220426/36‑1 (MQ=16)
gTAAAAACGTCGGCGACGATCTGAACGAAGGTAAAc > 1:22364/1‑36 (MQ=255)
gTAAAAACGTCGGCGACGATCTGAACGAAGGTAAAc > 1:6550808/1‑36 (MQ=255)
gTAAAAACGTCGGCGACGATCTGAACGAAGGTAAAc > 1:5344024/1‑36 (MQ=255)
gTAAAAACGTCGGCGACGATCTGAACGAAGGTAAAc > 1:1717211/1‑36 (MQ=255)
tAAAAACGTCGGCGACGATCTGAACGAAGGTAAAcc < 1:362059/36‑1 (MQ=255)
tAAAAACGTCGGCGACGATCTGAACGAAGGTAAAcc < 1:3475064/36‑1 (MQ=255)
aaaaaCGTCGGCGACGATCTGAACGAAGGTAAACCg > 1:4681386/1‑36 (MQ=255)
aaaaCGTCGGCGACGATCTGAACGAAGGTAAACCGa > 1:143817/1‑36 (MQ=255)
aaaaCGTCGGCGAAGATCTGAACGAAGGTAAACCGa < 1:2336263/36‑1 (MQ=255)
aaaCGTCGGCGACGATCTGAACGAAGGTAAACCGAc > 1:3818544/1‑36 (MQ=255)
aaaCGTCGGCGACGATCTGAACGAAGGTAAACCGAc > 1:3418577/1‑36 (MQ=255)
aaaCGTCGGCGACGATCTGAACGAAGGTAAACCGAc > 1:4516632/1‑36 (MQ=255)
aaaCGTCGGCGACGATCTGAACGAAGGTAAACCGAc < 1:436665/36‑1 (MQ=255)
aaaCGTCGGCGACGATCTGAACGAAGGTAAACCGAc < 1:6620126/36‑1 (MQ=255)
aaCGTCGGCGACGATCTGAACGAAGGTAAACCGAcg > 1:2126234/1‑36 (MQ=255)
aaCGTCGGCGACGATCTGAACGAAGGTAAACCGAcg < 1:3459069/36‑1 (MQ=255)
aaCGTCGGCGACGATCTGAACGAAGGTAAACCGAcg < 1:1607498/36‑1 (MQ=255)
aCGTCGGCGACGATCTGAACGAAGGTAAACCGActc > 1:6611650/1‑34 (MQ=255)
aCGTCGGCGACGATCTCAACGAAGGTAAACCGAcgc > 1:6376832/1‑36 (MQ=255)
gTCGGCGACGATCTGAACGAAGGTAAACCGAcgctg < 1:3036347/36‑1 (MQ=255)
tCGGCGACGATCTGAACGAAGGTAAACCGAcgctgc > 1:1819734/1‑36 (MQ=255)
tCGGCGACGATCTGAACAAAGGTAAACCGAcgctgc < 1:3556127/36‑1 (MQ=255)
gcGGCGACGATCTGAACGAAGGTAAACCGAcgctgc < 1:4635624/35‑1 (MQ=255)
cGGCGACTATCTGAACGAAGGTAAACCGAcgctgcc < 1:4071312/36‑1 (MQ=255)
cGGCGACGATCTGAACGAAGGTAAACCGAcgctgcc < 1:6941158/36‑1 (MQ=255)
ggCGACGATCTGAACGAAGGTAAACCGAcgctgccg > 1:3034824/1‑36 (MQ=255)
gCGGCGATCTGAACGAAGGTAAACCGGcgctgccgc < 1:509634/36‑1 (MQ=37)
gCGACGATCTGAACGAAGGTAAACCGAcgctgccgc > 1:1444141/1‑36 (MQ=255)
gCGACGATCTGAACGAAGGTAAACCGAagctgccgc > 1:4721620/1‑36 (MQ=255)
acgacgaTCTGAAGAACGGAAAGCCGAcgctgccgc < 1:642578/35‑1 (MQ=16)
cgacgaTCTGAACGAAGGTAAACCGAcgctgccgct < 1:6293989/36‑1 (MQ=255)
cgacgaTCTGAACGAAGGTAAACCGAcgctgccgct < 1:142548/36‑1 (MQ=255)
caacgtTCTGAAGGAAGGAAAACCGAcgctgccgct < 1:6371749/34‑1 (MQ=21)
gacgaTCTGAACGAAGGTAAACCGAcgctgccgctg > 1:1779538/1‑36 (MQ=255)
gacgaTCTGAACGAAGGTAAACCGAcgctgccgctg > 1:2148126/1‑36 (MQ=255)
gacgaTCTGAACGAAGGTAAACCGAcgctgccgctg > 1:4230664/1‑36 (MQ=255)
gacgaTCTGAACGAAGGTAAACCGAcgctgccgctg < 1:7127731/36‑1 (MQ=255)
acgaTCTGAACGAAGGTAAACCGAcgctgccgctgc < 1:4435461/36‑1 (MQ=255)
acgaTCTGAACGAAGGTAAACCGAcgctgccgctgc < 1:5127244/36‑1 (MQ=255)
acgaTCTGAACGAAGGTAAACCGAcgctgccgctgc > 1:425319/1‑36 (MQ=255)
cgaTCTGAACGAAGGTAAACCGACGCTGCCgctgct < 1:3965098/36‑1 (MQ=255)
cgaTCTGAACGAAGGTAAACCGACGCTGCCgctgct > 1:3604562/1‑36 (MQ=255)
cgaTCGGAACGAAGGTAAACCGACGCTGCCgctgct < 1:7293780/36‑1 (MQ=255)
gaTCTGAACGAAGGTAAACCGACGCTGCCGctgctg > 1:501386/1‑36 (MQ=255)
aTCTGAACGAAGGTAAACCGACGCTGCCGCtgctgc < 1:5357731/36‑1 (MQ=255)
aTCTGAACGAAGGTAAACCGACGCTGCCGCtgctgc > 1:2489094/1‑36 (MQ=255)
aTCTGAACGAAGGTAAACCGACGCTGCCGCtgctgc > 1:2281114/1‑36 (MQ=255)
tCTGAACGAAGGTAAACCGACTCTGCCGCTGCTGCa > 1:2325512/1‑36 (MQ=255)
tCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCa < 1:3839600/36‑1 (MQ=255)
tCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCa > 1:1589307/1‑36 (MQ=255)
cTGAGCAAAGGAAAACCGACACTGCCGCTGCTGCAt < 1:1044252/36‑1 (MQ=19)
cTGAACGAAGGAAAACCGACGCTGCCGCTGCTGCAt < 1:5734849/36‑1 (MQ=255)
cTGAACGAAGGAAAACCGACGCTGCCGCTGCTGCAt < 1:6375830/36‑1 (MQ=255)
tGACCGAAGGTAAACCGACGCTGCCGCTGCTGCATg < 1:7058839/36‑1 (MQ=255)
tGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATg < 1:7204421/36‑1 (MQ=255)
gAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGc < 1:1643237/36‑1 (MQ=255)
gAACGAAGGTAAACCGACGCTGCCGCTGCTGCAGGc > 1:4563031/1‑36 (MQ=255)
aaCGAAGGTAAACCGACGCTGGCGCTGCTGCATGCg > 1:1472195/1‑36 (MQ=255)
aaCGAAGGCAAACCGACGCTGCCGCTGCTGCATGCg > 1:5310/1‑36 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa < 1:7347165/36‑1 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa > 1:7228493/1‑36 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa > 1:1571294/1‑36 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa > 1:211746/1‑36 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa > 1:2204137/1‑36 (MQ=255)
aCGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGa < 1:3689167/36‑1 (MQ=255)
ggAAGTTAAACGGACGCTGCCGCTGCTGCATGCGAt < 1:5733241/35‑1 (MQ=25)
cGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGAt < 1:4037493/36‑1 (MQ=255)
cGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGAt > 1:7053189/1‑36 (MQ=255)
gAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg > 1:6324894/1‑36 (MQ=255)
gAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg > 1:7015003/1‑36 (MQ=255)
gAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg > 1:6002138/1‑36 (MQ=255)
gAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg > 1:4435003/1‑36 (MQ=255)
aaGGTAAACCGACGCTGCCGCTGCTGCATGCGATGc > 1:6535921/1‑36 (MQ=255)
aaGGAAACCCGACGCTGCCGCTGCTGCATGCGATGc < 1:3738177/36‑1 (MQ=25)
aaGGAAACCCGACGCTGCCGCCGCTGCATGCGATGc < 1:4144614/36‑1 (MQ=25)
aGGTAAACCGACGCTGCCGCTGCTGCATGCGATGca < 1:3389974/36‑1 (MQ=255)
ggTAACCCGACGCTGCCGCTGCTGCATGCGATGcat < 1:4614462/36‑1 (MQ=255)
ggTAAACCGACGCTGCCGCTGCTGCATGCGATGcat > 1:1350883/1‑36 (MQ=255)
gTAAACCGACGCTGCCGCTGCTGCATGCGATGcatc > 1:1567753/1‑36 (MQ=255)
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TTAGGTAAAAACGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATC > REL606/3269610‑3269679
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 18 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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