New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 140096348 (1.010)13 (0.270) 7/58 NT 23.2% coding (773/1311 nt) abgA predicted peptidase, aminobenzoyl‑glutamate utilization protein
?REL606 = 3875872 38 (0.660)intergenic (‑306/+47) glmU/atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

TGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTT  >  REL606/3875837‑3875907
                                   |                                   
tgAACGCTATTCAGGACGGGTCAGACGCGCaaaaaa                                     <  1:5609347/36‑1 (MQ=255)
tgAACGCTATTCAGGACGGGTCACACGCGCaaaaaa                                     >  1:1367284/1‑36 (MQ=255)
 gAACGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                    <  1:994606‑M2/36‑2 (MQ=255)
 gAACGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                    <  1:1639061‑M2/36‑2 (MQ=255)
 gAACGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                    <  1:4947712‑M2/36‑2 (MQ=255)
  aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAaa                                   >  1:6804729‑M2/1‑34 (MQ=255)
     gCTATTCAGGACGGGTCACACGCGCAAAAAAaagcc                                <  1:6482072‑M2/36‑6 (MQ=255)
     gCTATTCAGGACGGGTCACACGCGCAAAAAAaagcc                                <  1:6166913‑M2/36‑6 (MQ=255)
      cTATTCAGGACGGGTCACACGCGCAAAAAAaagcca                               <  1:6345093‑M2/36‑7 (MQ=255)
      cTATTCAGGACGGGTCACACGCGCAAAAAAaagcca                               <  1:5956439‑M2/36‑7 (MQ=255)
       tATTCAGGACGGGTCACACGCGCAAAAAAAagccag                              >  1:6652978/1‑36 (MQ=255)
        agtCAGGACGGGTCACACGCGCAAAAAAAagccagc                             <  1:1128306/34‑1 (MQ=255)
        aTTCAGGACGGGTCACACGCGCAAAAAAAagccagc                             <  1:6696198/36‑1 (MQ=255)
        aTTCAGGACGGGTCAAACGAGTAAAAAAAagccagc                             <  1:641399/36‑1 (MQ=25)
         ttCAGGACGGGTCACACGCGCAAAAAAAagccagcc                            >  1:4418737/1‑36 (MQ=255)
          tCAGGACGGGTAACACGCGCAAAAAAAAGCCAGCCt                           <  1:3444718/36‑1 (MQ=255)
           cAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTg                          <  1:2831712/36‑1 (MQ=255)
           cAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTg                          <  1:3519706/36‑1 (MQ=255)
            aGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGt                         >  1:1555366/1‑36 (MQ=255)
             ggACGGGTCACACGCGCAAAAAAAAGCCAGCCTGtt                        >  1:7027681/1‑36 (MQ=255)
                cGGGTCACACTCGCAAAAAAAAGCCAGCCTGTTTcc                     <  1:6857284/36‑1 (MQ=255)
                cGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTcc                     >  1:4908833/1‑36 (MQ=255)
                  ggTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAg                   >  1:2661028/1‑36 (MQ=255)
                  ggTCACACGCGCAAAAAAAAGCCAGCCAGTTTCCAg                   >  1:270328/1‑36 (MQ=255)
                  ggTCACACGCGAAAAAAAAAGCCAGCCTGTTTCCAg                   <  1:4750797/36‑1 (MQ=255)
                   gTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGa                  <  1:6409596/36‑1 (MQ=255)
                    tCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGAc                 >  1:3030438/1‑36 (MQ=255)
                    tCACACGCACAAAAAAAAGCCAGCCTGTTTCCAGAc                 <  1:4958780/36‑1 (MQ=255)
                     cacaCGCGCAAAAAAAAGCCAGCCTGTTTCCAGACt                >  1:4096465/1‑36 (MQ=255)
                      acacGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTg               <  1:3865375/36‑1 (MQ=255)
                      acacGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTg               >  1:3335867/1‑36 (MQ=255)
                       cacGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTgg              <  1:1803480/36‑1 (MQ=255)
                        acGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGc             >  1:3909916/1‑36 (MQ=255)
                        acGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGc             <  1:5209019/36‑1 (MQ=255)
                         ggcgcaAACAAaagccactcttgcactgcatgcaat            >  1:3195540‑M2/2‑11 (MQ=255)
                         cgcgCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCt            <  1:2572822/36‑1 (MQ=255)
                          gcggAAAAAAaagccactcttgcactgcatgcaatc           >  1:759243‑M2/1‑10 (MQ=255)
                          gcgcAAAAAAAAGCCAGCCTGTTTCAAGACTGGCtt           >  1:4863667/1‑36 (MQ=255)
                           cgcAAAAAAAAGCCAGCCTGTTTCCAGACTGGCttt          >  1:3848384/1‑36 (MQ=255)
                            gcAAAAAAaagccactcttgcactgcatgcaatcgc         >  1:6406582‑M2/1‑8 (MQ=255)
                             gcaaaaaaagccactcttgcactgcatgcaatcgcc        >  1:3635933‑M2/3‑7 (MQ=255)
                             cAAAAAAaagccactcttgcactgcatgcaatcgcc        >  1:3631908‑M2/1‑7 (MQ=255)
                             cAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTtg        <  1:6039509/36‑1 (MQ=255)
                             acaaaaaaagccactcttgcactgcatgcaatcgcc        >  1:3712384‑M2/3‑7 (MQ=255)
                              cacaaaaagccactcttgcactgcatgcaatcgccc       >  1:1430372‑M2/4‑6 (MQ=255)
                              aaaaaaaagccactcttgcactgcatgcaatcgccc       >  1:2943327‑M2/1‑6 (MQ=255)
                              aaaaaaaaGCCAGCCTGTTTCCAGACTGGCtttttt       >  1:434579/1‑34 (MQ=255)
                               aaaaaaagccactcttgcactgcatgcaatcgcccc      >  1:598506‑M2/1‑5 (MQ=255)
                                aaaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGc     <  1:3454207/36‑1 (MQ=255)
                                 aaaaagccactcttgcactgcatgcaatcgccccgc    >  1:653262‑M2/1‑3 (MQ=255)
                                 aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt    >  1:5249600/1‑36 (MQ=255)
                                 aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt    <  1:1403581/36‑1 (MQ=255)
                                 aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt    <  1:3803863/36‑1 (MQ=255)
                                  aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtt   <  1:5587935/36‑1 (MQ=255)
                                  aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtt   >  1:548329/1‑36 (MQ=255)
                                  aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtt   <  1:2063184/36‑1 (MQ=255)
                                  aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtt   <  1:7148274/36‑1 (MQ=255)
                                   aaagccactcttgcactgcatgcaatcgccccgcac  >  1:1642469‑M2/1‑1 (MQ=255)
                                   aaagccactcttgcactgcatgcaatcgccccgcac  >  1:4154337‑M2/1‑1 (MQ=255)
                                   aaagccactcttgcactgcatgcaatcgccccgcac  >  1:2735651‑M2/1‑1 (MQ=255)
                                   aaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCttt  <  1:7297000/36‑1 (MQ=255)
                                   |                                   
TGAACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTT  >  REL606/3875837‑3875907

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG