Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,992,578 | C→G | 20.7% | A191P (GCC→CCC) | ECB_03721 ← | conserved hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,992,578 | 0 | C→G | 20.7% | 5.7 ‑2.9 0.0 | 41 | 571 | ECB_03721 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (8/1): ref base (15/16): total (24/17) | ||||||||||
Fisher's exact test strand distribution p-value = 5.36e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TATGCCCGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATACGGGACATGAGAAAACTTCGCA > REL606/3992545‑3992612
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tatGCCCGCCTAACAGGCCTGTAATGGCAGGGGGTg > 1:4477792/1‑36 (MQ=255)
atGCCCGCCTAACAGGCCTGTAATGGCAGGGGccgg > 1:1827877/1‑33 (MQ=255)
gCCCGCCTAACAGGCCTGTAATGGCAGGGGCTgcgc < 1:3981035/36‑1 (MQ=255)
ccGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCg < 1:804666/36‑1 (MQ=255)
ccGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCg < 1:3448744/36‑1 (MQ=255)
cGCCTAACAGGCCTGTAATGGCAGGGGGTGCGCCGt > 1:3697075/1‑36 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGGTGCGCCGTc > 1:1936834/1‑36 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGGTGCGCCGTc > 1:7360183/1‑36 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTc < 1:5897683/36‑1 (MQ=255)
gCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTc < 1:6386714/36‑1 (MQ=255)
ccTAACAGGCCTGTAATGGCAGGGGCTGGGGCGTCa > 1:2034990/1‑36 (MQ=37)
ccTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCa < 1:5255616/36‑1 (MQ=255)
ccTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCa < 1:6912454/36‑1 (MQ=255)
cTAACAGGCCTGTAATGGCAGGGGGTGGGCCGTCAt > 1:941309/1‑36 (MQ=37)
aCAGGCCTGTAATGGCAGGGGGTGCGGCGTCATACg > 1:4463546/1‑36 (MQ=38)
aCAGGCCTGTAATGGCAGGGGCTGCGCCGTCATACg < 1:4939460/36‑1 (MQ=255)
aaGGCCTGTAATGGCAGGGGCTTCGCCGTCATCCgg < 1:6996632/35‑1 (MQ=37)
ttGTAATGGCAGGGGCTGCGCCGTCATACGGGACAt < 1:1523007/35‑1 (MQ=255)
cTGTAATGGCAGGGGGTGCGCCGGCCTTCGGGGCAt > 1:4097488/1‑36 (MQ=16)
cTGTAATGGCAGGGGCTGCGCCGTCATACGGGACAt < 1:6779006/36‑1 (MQ=255)
tGTAGTGGCGGGGGGTGCGCCGTCATACGGGACATg < 1:5928881/36‑1 (MQ=25)
gTAATGGCAGGGGTTGCGCCCCCATACGGGACAtca > 1:7743691/1‑34 (MQ=25)
gTAATGGCAGGGGGTGCGCCGTCATATGGGGCATgg > 1:6386792/1‑35 (MQ=255)
aaTGGCAGGGGCTGCGCCGTCATACGGGACATggga > 1:2454448/1‑36 (MQ=255)
aaTGGCAGGGGCTGCGCCCACTCACGGGGCATgcga > 1:518744/1‑36 (MQ=12)
aTGGCAGGGGCTGCGCCGTCATACGGGGCATGAGaa > 1:1274410/1‑36 (MQ=255)
tGGCAGGGGCTGCGCCGTCATACGGGACATGAGaaa < 1:5496232/36‑1 (MQ=255)
tGGCAGGGGCTGCGCCGTCATACGGGACATGAGaaa > 1:5169291/1‑36 (MQ=255)
ggCAGGGGCTGCGCCGTCATACGGGACATGAGaaaa > 1:28996/1‑36 (MQ=255)
gCAGGGGCTGCGCCGTCATACGGGACATGAGAAAAc > 1:3034582/1‑36 (MQ=255)
cAGGGGCTGCGCCGTCATACGGGACATGAGAAAACt > 1:5021678/1‑36 (MQ=255)
cAGGGGCTGCGCCGTCATACGGGACATGAGAAAACt > 1:6912940/1‑36 (MQ=255)
aGGGGCTGCGCCGTCATACGGGACATGAGAAAACtt > 1:2691030/1‑36 (MQ=255)
ggggCTGCGCCGTCATACGGGACATGAGAAAACTTc < 1:4975955/36‑1 (MQ=255)
ggggCTGCGCCGTCATACGGGACATGAGAAAACTTc < 1:4969433/36‑1 (MQ=255)
ggggCTGCGCCGTCATACGGGACATGAGAAAACTTc < 1:4141436/36‑1 (MQ=255)
gggCTGCGCCGTCATACGGGACATGAGAAAACTTCg > 1:4169130/1‑36 (MQ=255)
gggCTGCGCCGTCATACGGGACATGAGAAAACTTCg > 1:2493569/1‑36 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc > 1:6071179/1‑36 (MQ=255)
ggCTGCGCCGTCATACGGGACATGAGAAAACTTCGc > 1:1390734/1‑36 (MQ=255)
gCTGCGCCGTCATACGGGACATGAGAAAACTTCGCa < 1:6180842/36‑1 (MQ=255)
gCTGCGCCGTCATACGGGACATGAGAAAACTTCGCa > 1:398344/1‑36 (MQ=255)
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TATGCCCGCCTAACAGGCCTGTAATGGCAGGGGCTGCGCCGTCATACGGGACATGAGAAAACTTCGCA > REL606/3992545‑3992612
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 16 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
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