New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 208645140 (0.780)6 (0.120) 4/60 NT 13.0% intergenic (‑872/‑673) yegL/yegM hypothetical protein/multidrug efflux system, subunit A
?REL606 2752961 = 40 (0.670)coding (1009/2562 nt) mutS DNA mismatch repair protein

AGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCGGTACTGCGTCAGGTCGGCGACCTG  >  REL606/2752926‑2752996
                                   |                                   
aGCAAACTATTGGCGCATTGCAGGATTTCAccgccg                                     >  1:6860172/1‑36 (MQ=255)
aGCAAACTATTGGCGCATTGCAGGATTTCAccgccg                                     >  1:2620390/1‑36 (MQ=255)
aGCAAACTATTGGCGCATTGCAGGATTTCAccgccg                                     >  1:3395819/1‑36 (MQ=255)
 tcAAACTATTGGCGCATTGCAGGATTTCACCGCCgg                                    <  1:5501164/35‑1 (MQ=255)
 gaaaaCTATTGGCGCATTGCAGGATTTCACCGCCgg                                    <  1:4022603/34‑1 (MQ=255)
 gCAAACTATTGTCGAATTGCAGGATTTCACCGCCgg                                    <  1:7788279/36‑1 (MQ=37)
 gCAAACTATTGGCGCATTGCAGGATTTCACCGCCgg                                    >  1:6967154/1‑36 (MQ=255)
  aaaaCTTTGGGCGCATGGCAGGTTTTCACCGCCggg                                   <  1:3937391/35‑1 (MQ=16)
   aaaCTATTGGCGCATTGCAGGATTTCACCGCCGGGc                                  >  1:2149242/1‑36 (MQ=255)
   aaaCTATTGGCGCATTGCAGGATTTCACCGCCGGGc                                  >  1:5228515/1‑36 (MQ=255)
    aaCTATTGGCGCATTGCAGGATTTCACCGCCGGGCt                                 >  1:2151555/1‑36 (MQ=255)
    aaCTATTGGCGCATTGCAGGATTTCACCGCCGGGCt                                 <  1:6784396/36‑1 (MQ=255)
    aaCTATGGGCGCTTTGCAGGATTCCACCGCCGGGCt                                 <  1:6386928/36‑1 (MQ=21)
     aCTATTGGCGCCTTGCAGGATTTCACCGCCGGGCTa                                <  1:4511346/36‑1 (MQ=255)
     aCTATTGGCGCATTGGAGGATTTCACCGCCGGGCTa                                <  1:7166807/36‑1 (MQ=255)
     aCTATTGGCGCATTGCAGGATTTCACCGCCGGGCTa                                >  1:2781969/1‑36 (MQ=255)
     aCTAGTGGCGCATTGCAGGATTTCACCGCCGGGCTa                                <  1:349900/36‑1 (MQ=255)
      cTATTGGCGCATTGCAGGATTTCACCGCCGGTCTAc                               <  1:547636/36‑1 (MQ=255)
       tATGGGCGCATTGCAGGATTTCACCGCCGGGCTACa                              <  1:7313263/36‑1 (MQ=255)
        aTTGGCGCATTGCAGGATTTCACCGCCGGGCTACAg                             >  1:6783348/1‑36 (MQ=255)
        aTTGGCGCATTGCAGGATTTCACCGCCGGGCTACAg                             >  1:6701029/1‑36 (MQ=255)
          tGGCGCATTGCAGGATTTCACCGCCGGGCTACAGcc                           <  1:2965333/36‑1 (MQ=255)
          tGGCGCATTGCAGGATTTCACCGCCGGGCTACAGcc                           >  1:3936020/1‑36 (MQ=255)
           ggCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg                          <  1:4587231/36‑1 (MQ=255)
           ggCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg                          >  1:636630/1‑36 (MQ=255)
             cgcATTGCAGGATTTCACCGCCGGGCTACAGCCGGt                        >  1:3224692/1‑36 (MQ=255)
             cgcATTGCAGGATTTCACCGCCGGGCTACAGCCGGt                        >  1:1336547/1‑36 (MQ=255)
              gcATTGCAGGATTTCACCGCCGGGCTACAGGCGGTa                       >  1:4987206/1‑36 (MQ=255)
               cATTGCAGGATTTCACCGCCGGGCTACAGCCGGTAc                      >  1:6918994/1‑36 (MQ=255)
                tttGAAGGATTCCCCCGCCGGGCTACAGCCGGTACt                     <  1:1283793/35‑1 (MQ=25)
                aTTGCAGGATTTCACCGCCGGGCTACAGCCGGTACt                     >  1:6116368/1‑36 (MQ=255)
                 ttGCAGGATTTCACCGCCGGGCTACAGCCGGTACTg                    >  1:6913974/1‑36 (MQ=255)
                  ggaaGGATTCCACCGCCGGGCTACAGCCGGTACTGc                   <  1:6399351/33‑1 (MQ=37)
                   gCAGGATTTCACCGCCGGGCTACAGCCGGTACTGCg                  >  1:4765418/1‑36 (MQ=255)
                   gCAGGATTTCACCGCCGGGCTACAGCCGGTACTGCg                  >  1:6550572/1‑36 (MQ=255)
                    caggtttcccccgccGGGCTACAGCCGGTACTGCGt                 <  1:4121813‑M2/21‑1 (MQ=255)
                    cAGGATTTCACCGCCGGGCTACAGCCGGTACTGCgc                 >  1:4099175/1‑35 (MQ=255)
                    cAGGATTTCACCGCCGGGCTACAGCCGGTAATGCGt                 >  1:6930130/1‑36 (MQ=255)
                     gggtttcccccgccGGGCTACAGCCGGTACTGCGTc                <  1:5730296‑M2/22‑1 (MQ=255)
                     aGGATTTCACCGCCGGGCTACAGCCGGTAATGCGTc                >  1:90275/1‑36 (MQ=255)
                      ggtttcccccgccGGGCTACAGCCGGTACTGCGTCa               <  1:7071798‑M2/23‑1 (MQ=255)
                      ggATTTCACCGCCGGGCTACAGCCGGTACTGCGTCa               >  1:3110582/1‑36 (MQ=255)
                      ggATTTCACCGCCGGGCTACAGCCGGTACTGCGTCa               >  1:680527/1‑36 (MQ=255)
                       gATTTCACCGCCGGGCTACAGCCGGTACTGCGTCAg              >  1:1525075/1‑36 (MQ=255)
                        aTTTCACCGCCGGGCTACAGCCGGTACTGCGTCAgg             >  1:6534591/1‑36 (MQ=255)
                         tttCACCGCCGGGCTACAGCCGGTACTGCGTCAGGt            >  1:1085718/1‑36 (MQ=255)
                         ttcccccgccGGGCTCCAGCCGGTACTGCGTCAGGt            <  1:6039310‑M2/26‑1 (MQ=255)
                         ttccACCGCCGGCCAACAGCCGGTACTGCGTCAGGt            <  1:6120383/33‑1 (MQ=37)
                          ttCACCGCCGGGCTACAGCCGGTACTGCGTCAgggc           >  1:5100916/1‑34 (MQ=255)
                            cACCGCCGGGCTACAGCCGGTACTGCGTCAGGTCgg         >  1:5847879/1‑36 (MQ=255)
                             cccgccGGGCTCCAGCCGGTACTGCGTCAGGTCGGc        <  1:623969‑M2/30‑1 (MQ=255)
                             cccgccGGGCAACAGCCGGTACTGCGTCAGGTCGGc        <  1:1774682‑M2/30‑1 (MQ=255)
                             aCCGCCGGGCTACAGCCGGTACTGCGTCAGGTCGGc        >  1:7570007/1‑36 (MQ=255)
                             aCCGCCGGGCTACAGCCGGTACTGAGTCAGGTCGGc        >  1:1751136/1‑36 (MQ=255)
                              ccgccgGGCTACAGCCGGTACTGCGTTAGGGCggtg       >  1:2441338/1‑34 (MQ=37)
                               cgcgGGGCTACAGCCGGTACTGCGTCAGGTCGGCGa      <  1:5317573‑M2/32‑1 (MQ=255)
                               cgccGGGCTACAGCCGGTACTGCGTCAGGTCGGCGa      <  1:6351364‑M2/32‑1 (MQ=255)
                               cgccGGGCTACAGCCGGTACTGCGTCAGGCCGGCGa      >  1:6341761‑M2/5‑36 (MQ=255)
                               ccccgGGCCACAGCCGGTACTGCGTCAGGTCGGCGa      <  1:5664463/34‑1 (MQ=37)
                               ccccgGCCTACAGCCGGTACTGCGTCAGGTCGGCGa      <  1:6994779/34‑1 (MQ=37)
                                gccGGGCTACAGCCGGTACTGCGTCAGGTCGGCGAc     >  1:2171012‑M2/4‑36 (MQ=255)
                                cccgGGCCCCAGCCGGTACTGCGTCAGGTCGGCGAc     <  1:3657940/35‑1 (MQ=25)
                                 ccGGGCTACAGCCGGTACTGCGTCAGGTCGGCGAcc    >  1:3300918‑M2/3‑36 (MQ=255)
                                  cgGGCTACAGCCGGTATTGCGTCAGGTCGGGGACCt   >  1:3458098/1‑36 (MQ=37)
                                   gggCTACAGCCGGTACTGCGTCAGGTTGGCGAGCTg  >  1:5064813/1‑36 (MQ=37)
                                   gggCTACAGCCGGTACTGCGTCAGGTCGGCGACCTg  >  1:271660/1‑36 (MQ=255)
                                   |                                   
AGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCGGTACTGCGTCAGGTCGGCGACCTG  >  REL606/2752926‑2752996

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 27 ≤  ATCG  < 37 ≤  ATCG