New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1199793 =65 (1.240)9 (0.170) 8/64 NT 12.8% coding (22/828 nt) potB spermidine/putrescine ABC transporter membrane protein
?REL606 = 1588685 58 (1.010)coding (219/900 nt) eamA cysteine and O‑acetyl‑L‑serine efflux system

CATCAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACT  >  REL606/1199758‑1199828
                                   |                                   
gcataccgaagttaatggcacaaaaaagaaaagcaa                                     <  1:6636090‑M1/1‑1 (MQ=255)
catcaGGTTGGGCAGAAAGACAAACAACACAAGCCa                                     <  1:6013988/36‑1 (MQ=255)
 cataccgaagttaatggcacaaaaaagaaaagcaaa                                    <  1:5620731‑M1/2‑1 (MQ=255)
 cataccgaagttaatggcaaaaaaaagaaaagcaaa                                    >  1:2544432‑M1/35‑36 (MQ=255)
 atcaGGTTGGGCAGAAAGACAAACAACACAAGCCaa                                    >  1:1912466/1‑36 (MQ=255)
 atcaGGTTGGGCAGAAAGACAAACAACACAAGCCaa                                    >  1:4368450/1‑36 (MQ=255)
 atcaGGTTGGGCAGAAAGACAAACAACACAAGCCaa                                    <  1:1230860/36‑1 (MQ=255)
  ataccgaagttaatggcacaaaaaagaaaagcaAAc                                   >  1:7080854‑M1/34‑36 (MQ=255)
  ataccgaagttaatggcacaaaaaagaaaagcaAAc                                   >  1:2731714‑M1/34‑36 (MQ=255)
  ataccgaagttaatggcacaaaaaagaaaagcaAAc                                   <  1:136986‑M1/3‑1 (MQ=255)
   caGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                  >  1:2618349/1‑36 (MQ=255)
   caGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                  >  1:4168420/1‑36 (MQ=255)
   caGGTTGGGCAGAAAGACAAACAACACAAGCCAAcc                                  >  1:5878534/1‑36 (MQ=255)
   caGGTTGGGAAGAAAGACAAACAACACAAGCCAAcc                                  <  1:579011/36‑1 (MQ=255)
     ggTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                >  1:716526/1‑36 (MQ=255)
     ggTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                >  1:3893833/1‑36 (MQ=255)
     ggTTGGGCAGAAAGACAAACAACACAAGCCAACCGa                                <  1:3674342/36‑1 (MQ=255)
      gTTGGGCAGAAAGACAAACAACACAAGCCAACCGAc                               >  1:287352/1‑36 (MQ=255)
      gTTGGGCAGAAAGACAAACAACACAAGCCAAACGAc                               >  1:2302419/1‑36 (MQ=255)
       ttGGGTAGAAAGACAAACAACACAAGCCAACCGACa                              <  1:5454125/36‑1 (MQ=255)
       ttGGGCATAAAGACAAACAACACAAGCCAACCGACa                              <  1:449854/36‑1 (MQ=255)
       ttGGGCAGAAAGACAAACAACACAAGCCAACCGACa                              >  1:7488257/1‑36 (MQ=255)
       ttGGGCAGAAAGACAAACAACACAAGCCAACCGACa                              >  1:7487490/1‑36 (MQ=255)
       ttGGGCAGAAAGACAAACAACACAAGCCAACCGACa                              <  1:179790/36‑1 (MQ=255)
        tgcgCAGAAAGACAAGAAACACAAGCCAACCGACaa                             <  1:4495338/33‑1 (MQ=37)
        tGGGCAGAAAGACAAACAACACAAGCCAACCGACaa                             >  1:5540969/1‑36 (MQ=255)
         gggCAGAAAGACAAACAACACAAGCCAACCGACAAt                            >  1:5843804/1‑36 (MQ=255)
         gggCAGAAAGACAAACAACACAAGCCAACCGACAAt                            >  1:2865470/1‑36 (MQ=255)
           gCAGAAAGACAAACAACACAAGCCAACCGACAATAg                          >  1:6861993/1‑36 (MQ=255)
            cAGAAAGACAAACAACACAAGCCAACCGACAATAGt                         >  1:1088892/1‑36 (MQ=255)
            aaaaaaGAAAAACAACAAAAGCCAACCGACAATAGt                         <  1:2138570/33‑1 (MQ=21)
             aGAAAGACAAACAACACAAGCCAACCGACAATAGTg                        >  1:6994401/1‑36 (MQ=255)
              gAAAGACAAACAACACAAGCCAACCGNCAATAGTGa                       >  1:4545668/1‑36 (MQ=255)
              gAAAGACAAACAACACAAGCCAACCGACAATAGTGa                       >  1:2722624/1‑36 (MQ=255)
              aaaaGACAAAAAACACAAGCAAACCGACAATAGTGa                       <  1:2104274/35‑1 (MQ=37)
               aaaGACAAACAACACAAGCCAACCGACCATAGTGAc                      >  1:6985328/1‑36 (MQ=255)
               aaaGACAAACAACACAAGCCAACCGACAATAGTGAc                      >  1:2710150/1‑36 (MQ=255)
               aaaGACAAACAACACAAGCCAACCGACAATAGTGAc                      >  1:71405/1‑36 (MQ=255)
               aaaGAAAAACAACACAAGCCAACCGACAATAGTGAc                      <  1:2363870/36‑1 (MQ=255)
               aaaGAAAAAAAACACAAGCAAACCGACAATAGTGAc                      <  1:156799/36‑1 (MQ=21)
                aaGACAAACAACACAAGCCAACCGACAATAGTGACa                     >  1:1120929/1‑36 (MQ=255)
                aaGACAAACAACAAAATCCAACCGACAATAGTGACa                     <  1:2098113/36‑1 (MQ=38)
                 aGACAAACAACACAAGCCAACCGACAATAGTGACaa                    >  1:779513/1‑36 (MQ=255)
                 aGACAAACAACACAAGCCAACCGACAATAGTGACaa                    >  1:281396/1‑36 (MQ=255)
                  gaaaaacaaCAAAAGCCAACCGACAATAGTGACAAt                   <  1:2275825/33‑1 (MQ=25)
                  gACAAACAACACAAGCCAACCGACAATAGTGACAAt                   >  1:5518123/1‑36 (MQ=255)
                  gACAAACAACACAAGCCAACCGACAATAGTGACAAt                   >  1:6234394/1‑36 (MQ=255)
                    caaacaaCAAAAGCCAACAGAAAATAGTGACAATCa                 >  1:2389896/1‑36 (MQ=25)
                    aaaacaaCAAAAGCCAACCGACAATAGTGACAATCa                 <  1:127588/35‑1 (MQ=255)
                     aaacaaCACAAGCCAACCGACAATAGTGACAATCAc                >  1:6449775/1‑36 (MQ=255)
                     aaacaaCACAAGCCAACCGACAATAGTGACAATCAc                >  1:4682527/1‑36 (MQ=255)
                     aaaaaaaaaaagcaAACCGACAATAGTGACAATCAc                >  1:7014597‑M1/15‑36 (MQ=255)
                      aacaacACAAGCCAACCGACAATAGTGACAATCACt               >  1:5806010/1‑36 (MQ=255)
                      aacaacACAAGCCAACCGACAATAGTGACAATCACt               >  1:5566408/1‑36 (MQ=255)
                      aacaacACAAGCCAACCGACAATAGTGACAATCACt               >  1:2344020/1‑36 (MQ=255)
                      aacaaaAAAAGCCAACCGACAATAGTGACAATCACt               <  1:5500200/36‑1 (MQ=38)
                      aaaaacaAAAGCCAACCGACAATAGTGACAATCACt               <  1:7221344/33‑1 (MQ=38)
                      aaaaacaAAAGCCAACCGACAATAGTGACAATCACt               <  1:5893562/33‑1 (MQ=38)
                      aaaaaaaaaagcaAACCGACAATAGTGACAATCACt               >  1:1476770‑M1/14‑36 (MQ=255)
                       acaacaCAAGCCAACCGACAATAGTGACAATCACTa              >  1:1608601/1‑36 (MQ=255)
                       acaacaCAAGCCAACCGACAATAGTGACAATCACTa              >  1:2560841/1‑36 (MQ=255)
                       acaacaCAAGCCAACCGACAATAGTGACAATCACTa              >  1:5894179/1‑36 (MQ=255)
                       aaaaaaaaagcaAACCGACAATAGTGACAATCACTa              >  1:1516805‑M1/13‑36 (MQ=255)
                        caacaCAAGCCAACCGACAATAGTGACAATCACTAc             >  1:2031767/1‑36 (MQ=255)
                        caacaCAAGCCAACCGACAATAGTGACAATCACTAc             >  1:465958/1‑36 (MQ=255)
                        caacaCAAGCCAACCGACAATAGTGACAATCACTAc             >  1:3760677/1‑36 (MQ=255)
                         aacaCAAGCCAACCGACAATAGTGACAATCACTACa            >  1:560680/1‑36 (MQ=255)
                           aacaagcaAACCGACAATAGTGACAATCACTACAtt          >  1:1179389‑M1/9‑36 (MQ=255)
                           aaaaaGCCAACCGACAATAGTGACAATCACTACAtt          <  1:483815/33‑1 (MQ=255)
                            acaAGCCAACCGACAATAGTGACAATCACTACATTc         >  1:7001669/1‑36 (MQ=255)
                            acaAGCCAACCGACAATAGTGACAATCACTACATTc         >  1:6061804/1‑36 (MQ=255)
                             caAGCCAACCGACAATAGTGACAATCACTACATTCt        >  1:1750572/1‑36 (MQ=255)
                             caAGCCAACCGACAATAGTGACAATCACTACATTCt        >  1:2244521/1‑36 (MQ=255)
                             aaaGCCAACCGACAATAGTGACAATCACTACATTCt        <  1:3420926/35‑1 (MQ=255)
                              aagcaAACCGACAATAGTGACAATCACTACATTCTg       >  1:2614732‑M1/6‑36 (MQ=255)
                              aaGCCAACCGACAATAGTGACAATCACTACATTCTg       <  1:1224214/36‑1 (MQ=255)
                               agcaAACCGACAATAGTGACAATCACTACATTCTgg      >  1:4819509‑M1/5‑36 (MQ=255)
                               aGCCAACCGACAATAGTGACAATCACTACATTCTgg      <  1:3533362/36‑1 (MQ=255)
                                gcaAACCGACAATAGAGACAATCACTACATTCTGGa     >  1:2529392‑M1/4‑36 (MQ=255)
                                gCCAACCGGCAATAGTTACCATCACTCCATTCTGGa     <  1:597556/36‑1 (MQ=19)
                                 ccAACCGACAATAGTGACAATCACTACATTCTGGaa    <  1:2457211/36‑1 (MQ=255)
                                 ccAACCGACAATAGTGACAATCACTACATTCTGGaa    >  1:4254316/1‑36 (MQ=255)
                                 caAACCGACAATAGTGACAATCACTACATTCTGGaa    >  1:1098638‑M1/3‑36 (MQ=255)
                                  aaaCCTACAAGAGTTACAATCACTACATTCTGGAac   <  1:4807195/35‑1 (MQ=255)
                                  aAACCGACAATAGTGACAATCACTACATTCTGGAAc   >  1:286078‑M1/2‑36 (MQ=255)
                                   AACCGACAATAGTGATAATCACTACATTCTGGAACt  <  1:3269409‑M1/36‑1 (MQ=255)
                                   AACCGACAATAGTGACAATCACTACATTCTGGAACt  <  1:3122552‑M1/36‑1 (MQ=255)
                                   AACCGACAATAGTGACAATCACTACATTCTGGAACt  >  1:3432067‑M1/1‑36 (MQ=255)
                                   |                                   
CATCAGGTTGGGCAGAAAGACAAACAACACAAGCCAACCGACAATAGTGACAATCACTACATTCTGGAACT  >  REL606/1199758‑1199828

Base quality scores:  ATCG  < 3 ≤  ATCG  < 9 ≤  ATCG  < 21 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG