New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640118 =43 (0.790)9 (0.160) 6/62 NT 23.1% intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 = 1245375 17 (0.280)coding (66/441 nt) ycgY hypothetical protein

GATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAG  >  REL606/640083‑640152
                                   |                                  
gccagtcaggcgttaaaaatggggcggatagtgagg                                    >  1:740056‑M1/36‑36 (MQ=255)
gATACGTCAGCAAGAATTCAAAACCCGCTTAATCAg                                    <  1:2994934/36‑1 (MQ=255)
 ccagtcaggcgttaaaaatggggcggatagtgagGc                                   >  1:8437233‑M1/35‑36 (MQ=255)
 aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                   <  1:7172712/36‑1 (MQ=255)
 aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                   <  1:7103417/36‑1 (MQ=255)
 aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                                   <  1:7096735/36‑1 (MQ=255)
  tACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg                                  >  1:6616404/1‑36 (MQ=255)
  cagtcaggcgttaaaaatggggcggatagtgagGCg                                  >  1:8044721‑M1/34‑36 (MQ=255)
   agtcaggcgttaaaaatggggcggatagtgagGCgg                                 <  1:5970081‑M1/4‑1 (MQ=255)
   agtcaggcgttaaaaatggggcggatagtgagGCgg                                 <  1:2447530‑M1/4‑1 (MQ=255)
   aCGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg                                 >  1:7568176/1‑36 (MQ=255)
    cGTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg                                >  1:6202245/1‑36 (MQ=255)
     gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                               <  1:2781711/36‑1 (MQ=255)
     gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt                               <  1:6564059/36‑1 (MQ=255)
       cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                             >  1:8383880/1‑36 (MQ=255)
       cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt                             >  1:2398554/1‑36 (MQ=255)
       aggcgttaaaaatggggcggatagtgagGCGGGttt                             <  1:2524273‑M1/8‑1 (MQ=255)
         gCAAGAATTCAAAACCCGCTTAATCAGCGGGttttt                           >  1:7670146/1‑36 (MQ=255)
         gCAAGAATTCAAAACCCGCTTAATCAGCGGGttttt                           <  1:7075789/36‑1 (MQ=255)
          cAAGAATTCAAAACCCGCTTAATCAGCGGGtttttt                          <  1:3298874/36‑1 (MQ=255)
          cAAGAATTCAAAACCCGCTTAATCAGCGGGtttttt                          <  1:3480715/36‑1 (MQ=255)
           gttaaaaatggggcggatagtgagGCGggtttttgt                         <  1:1513514‑M1/12‑3 (MQ=255)
           gttaaaaatggggcggatagtgagGCGGGttttttt                         <  1:3619495‑M1/12‑1 (MQ=255)
            ttaaaaatggggcggatagtgagGCGGGtttttttt                        <  1:1960249‑M1/13‑1 (MQ=255)
            ttaaaaatggggcggatagtgagGCGGGttttgttt                        <  1:2069000‑M1/13‑1 (MQ=255)
            ttaaaaatggggcggatagtgagGCGGGtctttttt                        <  1:4520533‑M1/13‑1 (MQ=255)
            aGAATTCAAAACCCGCTTAATCAGCGGGtttttttt                        <  1:1511694/36‑1 (MQ=255)
             gAATTCAAAACCCGCTTAATCAGCGGGttttttttt                       >  1:7003965/1‑36 (MQ=255)
             gAATTCAAAACCCGCTTAATCAGCGGGttttttttt                       <  1:3713277/36‑1 (MQ=255)
              aaaaatggggcggatagtgagGCGGGTTTTTTTTTg                      <  1:3297907‑M1/15‑1 (MQ=255)
               aaaatggggcggatagtgagGCGGGTTTTTGTTTgg                     <  1:5876837‑M1/16‑1 (MQ=255)
                ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGt                    <  1:3537698/36‑1 (MQ=255)
                aaatggggcggatagtgagGCGGGTTTTTTTGTGGt                    <  1:5194725‑M1/17‑1 (MQ=255)
                  cAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCt                  >  1:2802346/1‑36 (MQ=255)
                    aaaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCttt                <  1:3472573/36‑1 (MQ=255)
                     aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa               <  1:4170438/36‑1 (MQ=255)
                     aaCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTa               <  1:5923159/36‑1 (MQ=255)
                      aCCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAg              >  1:7660569/1‑36 (MQ=255)
                       cccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgt             <  1:4857422/36‑1 (MQ=255)
                        ccGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtg            <  1:60159/36‑1 (MQ=255)
                         cGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtgt           <  1:4574464/36‑1 (MQ=255)
                         cGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtgt           <  1:2001861/36‑1 (MQ=255)
                         cGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAgtgt           <  1:983255/36‑1 (MQ=255)
                          gCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg          <  1:5153429/36‑1 (MQ=255)
                          gCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg          >  1:4825835/1‑36 (MQ=255)
                          acTTAATCAGCGGGTTTTTTTTTGGTCTTTAGtgtg          >  1:460122/2‑36 (MQ=255)
                           cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGc         <  1:690416/36‑1 (MQ=255)
                           cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGc         <  1:5723151/36‑1 (MQ=255)
                           cTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGc         <  1:5393165/36‑1 (MQ=255)
                             tAATCAGCGGGTTTTTTTTTGGTCTTTATTGTGCgg       >  1:2483025/1‑36 (MQ=255)
                             tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg       <  1:2414208/36‑1 (MQ=255)
                             tAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCgg       <  1:1559628/36‑1 (MQ=255)
                               aTCAGCGGGTTTTTTTTTGGTCTTTATTGTGCGGtt     >  1:7169327/1‑36 (MQ=255)
                               aTCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGtt     <  1:8324350/36‑1 (MQ=255)
                               aTCAGCGGGTTTTTTTTTGGGCTTTAGTGTGCGGtt     >  1:1505299/1‑36 (MQ=255)
                                tCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg    <  1:7395408/36‑1 (MQ=255)
                                tCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTg    <  1:8283785/36‑1 (MQ=255)
                                  aGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAg  <  1:4110606/36‑1 (MQ=255)
                                   |                                  
GATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTTGGTCTTTAGTGTGCGGTTGAG  >  REL606/640083‑640152

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG