New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2822187 =NA (NA)32 (0.570) 26/64 NT 54.2% noncoding (768/768 nt) IS1 repeat region
?REL606 = 2997504 27 (0.440)coding (172/903 nt) ECB_02798 conserved hypothetical protein

ACATAAAACACTATCAATAAGTTGGAGTCATTACCCAA...................................  <  REL606/2822221‑2822187
...................................CAAGTTCAAAATCTGAAAGTGTGATGTTCAGATTTTCT  <  REL606/2997504‑2997467
                                                                         
   TAAAACACTATCAATAAGTTGGAGTCATTACCCAAG                                    >  1:3816368/1‑36 (MQ=38)
    AAAACACTATCAATAAGTTGGAGTCATTACCCAAGT                                   <  1:7729887/36‑1 (MQ=38)
        CACTATCAATAAGTTGGAGTCATTACCCAAGTTCAA                               <  1:5664996/36‑1 (MQ=38)
        CACTATCAATAAGTTGGAGTCATTACCCAAGTTCAA                               >  1:6144544/1‑36 (MQ=38)
         ACTATCAATAAGTTGGAGTCATTACCCAAGTTCAAA                              >  1:5443078/1‑36 (MQ=38)
         ACTATCAATAAGTTGGAGTCATTACCCAAGTTCAAA                              <  1:4080983/36‑1 (MQ=38)
          CTATCAATAAGTTGGAGTCATTACCCAAGTTCAAAA                             >  1:3076877/1‑36 (MQ=38)
           TATCAATAAGTTGGAGTCATTACCCAAGTTCAAAAT                            <  1:3803804/36‑1 (MQ=38)
           TATCAATAAGTTGGAGTCATTACCCAAGTTCAAAAT                            >  1:1372074/1‑36 (MQ=38)
             TCAATGAGTTGGAGTCATTACCCAAGTTCAAAATCT                          >  1:5580535/1‑36 (MQ=255)
             TCAATAAGTTGGAGTCATTACCCAAGTTCAAAATCT                          <  1:4073744/36‑1 (MQ=38)
              CAATAAGTTGGAGTCATTACCCAAGTTCAAAATCTG                         <  1:7557228/36‑1 (MQ=38)
              CAATAAGTTGGAGTCATTACCCAAGTTCAAAATCTG                         >  1:7791918/1‑36 (MQ=38)
              CAATAAGTTGGAGTCATTACCCAAGTTCAAAATCTG                         <  1:2483108/36‑1 (MQ=38)
              CAATAAGTTGGAGTCATTACCCAAGTTCAAAATCTG                         <  1:1722427/36‑1 (MQ=38)
                ATAAGTTGGAGTCATTACCCAAGTTCAAAATCTGAA                       <  1:7195800/36‑1 (MQ=32)
                 TAAGTTGGAGTCATTACCCAAGTTCAAAATCTGAAA                      <  1:6943406/36‑1 (MQ=1)
                   AGTTGGAGTCATTACCCAAGTTCAAAATCTGAAAGT                    >  1:7915755/1‑36 (MQ=1)
                   AGTTGGAGTCATTACCCAAGTTCAAAATCTGAAAGT                    <  1:429141/36‑1 (MQ=1)
                    GTTGGAGTCATTACCCAAGTTCAAAATCTGAAAGTG                   >  1:5260727/1‑36 (MQ=1)
                    GTTGGAGTCATTACCCAAGTTCAAAATCTGAAAGTG                   <  1:6689261/36‑1 (MQ=1)
                    GTTGGAGTCATTACCCAAGTTCAAAATCTGAAAGTG                   <  1:7541977/36‑1 (MQ=1)
                     TTGGAGTCATTACCCAAGTTCAAAATCTGAAAATGT                  <  1:5455090/36‑1 (MQ=0)
                        GAGTCATTACCCAAGTTCAAAATCTGAAAGTGTGAT               >  1:428704/1‑36 (MQ=1)
                        GAGTCATTACCCAAGTTCAAAATCTGAAAGTGTGAT               >  1:2806725/1‑36 (MQ=1)
                        GAGTCATTACCCAAGTTCAAAATCTGAAAGTGTGAT               <  1:2000017/36‑1 (MQ=1)
                          GTCATTACCCAAGTTCAAAATCTGAAAGTGTGATGT             >  1:3960175/1‑36 (MQ=1)
                          GTCATTACCCAAGTTCAAAATCTGAAAGTGTGATGT             >  1:3221975/1‑36 (MQ=1)
                                ACCCAAGTTCAAAATCTTAAAGTGTGATGTTCAGAT       <  1:7574490/36‑1 (MQ=0)
                                ACCCAAGTTCAAAATCTGAAAGTGTGATGTTCAGAT       <  1:256421/36‑1 (MQ=1)
                                 CCCAAGTTCAAAATCTGAAAGTGTGATGTTCAGATT      >  1:3340618/1‑36 (MQ=1)
                                  CCAAGTTCAAAATCTGAAAGTGTGATGTTCAGATTT     <  1:2969424/36‑1 (MQ=1)
                                                                         
ACATAAAACACTATCAATAAGTTGGAGTCATTACCCAA...................................  <  REL606/2822221‑2822187
...................................CAAGTTCAAAATCTGAAAGTGTGATGTTCAGATTTTCT  <  REL606/2997504‑2997467

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG