Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 790,873 | C→G | 14.2% | intergenic (+119/‑582) | ECB_00731 → / → ECB_00732 | conserved hypothetical protein/conserved hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 790,873 | 0 | C→G | 14.2% | 5.1 ‑2.9 ‑0.0 | 34 | intergenic (+119/‑582) | ECB_00731/ECB_00732 | conserved hypothetical protein/conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (14/15): total (19/15) | ||||||||||
Fisher's exact test strand distribution p-value = 5.26e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.90e-01 |
AAACGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCTATTTATTCATCATTTGAAAAAAGAGTTGTCC > REL606/790840‑790908
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aaaCGGCGTGCTGGTGGCGGGTGAAGTATAGGGCAt < 1:3745374/36‑1 (MQ=21)
aCGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCt < 1:3427630/36‑1 (MQ=255)
aCGGCGTACCAGTGGCGGGGGGAGTATAGGGGATCt > 1:901579/1‑36 (MQ=25)
cGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCta < 1:4209813/36‑1 (MQ=255)
cGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCta < 1:2982057/36‑1 (MQ=255)
cGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCta < 1:7064532/36‑1 (MQ=255)
cGTACCAGTGGCGGGGGGAGGATAGGGGATCtattt > 1:420216/1‑36 (MQ=19)
tACCAGTGGCGGGTGAAGTATAGGGCATCtatttat < 1:6716589/36‑1 (MQ=255)
tACCAGTGGCGGGGGGGGAAAAAGGGATCtattttt > 1:2310489/1‑34 (MQ=0)
tACCAGTGGCGGGGGGAGGATAGGGGCTCtattttt > 1:1010836/1‑34 (MQ=255)
aCCAGTGGCGGGTGAAGTATAGGGCATCtatttatt < 1:2385938/36‑1 (MQ=255)
ccAGTGGCGGGTGAAGTATAGGGCATCTATTTATtc < 1:5425542/36‑1 (MQ=255)
cAGTGGCGGGTGAAGTATAGGGCATCTATTTATtca < 1:2582577/36‑1 (MQ=255)
cAGTGGCGGGGGGGGTATAGGGGATCtttttttttt > 1:5042282/1‑34 (MQ=9)
tagCGGGTTAAGTATAGAGCATCTATTTATtcatca < 1:1255940/34‑1 (MQ=37)
ggCGGGTGAAGTATAGGGCATCTATTTATTcatcat < 1:3573321/36‑1 (MQ=255)
cGGGTGAAGTATAGGGCATCTATTTATTCATCAttt < 1:1271748/36‑1 (MQ=255)
cGGGTGAAGTATAGGGCATCTATTTATTCATCAttt < 1:7421499/36‑1 (MQ=255)
ggTGAAGTATAGGGCATCTATTTATTCATCATTTGa > 1:306799/1‑36 (MQ=255)
gTGAAGTATAGGGCATCTATTTATTCATCATTTGaa > 1:6552694/1‑36 (MQ=255)
tGAAGTATAGGGCATCTATTTATTCATCATTTGaaa > 1:4464031/1‑36 (MQ=255)
aaGTATAGGGCATCTATTTATTCATCATTTGaaaaa > 1:2852352/1‑36 (MQ=255)
aaGTATAGGGCATCTATTTATTCATCATTTGaaaaa > 1:153588/1‑36 (MQ=255)
tataGGGCATCTATTTATTCATCATTTGAAAAAaga > 1:7374320/1‑36 (MQ=255)
tataGGGCATCTATTTATTCATCATTTGAAAAAaga > 1:7675243/1‑36 (MQ=255)
ataGGGCATCTATTTATTCATCATTTGAAAAAagag > 1:7322317/1‑36 (MQ=255)
aGGGCATCTATTTATTCATCATTTGAAAAAAGAGtt > 1:516087/1‑36 (MQ=255)
aGGGCATCTATTTATTCATCATTTGAAAAAAGAGtt > 1:1898547/1‑36 (MQ=255)
gggCATCTATTTATTCATCATTTGAAAAAAGAGTTg > 1:3895752/1‑36 (MQ=255)
gggCATCTATTTATTCATCATTTGAAAAAAGAGTTg > 1:3597261/1‑36 (MQ=255)
gggCATCTATTTATTCATCATTTGAAAAAAGAGTTg > 1:3125981/1‑36 (MQ=255)
ggCATCTATTTATTCATCATTTGAAAAAAGAGTTGt < 1:309479/36‑1 (MQ=255)
gCATCTATTTATTCATCATTTGAAAAAAGAGTTGTc > 1:4177552/1‑36 (MQ=255)
gCATCTATTTATTCATCACTTGAAAAAAGAGTTGTc < 1:5504973/36‑1 (MQ=255)
cATCTATTTATTCATCATTTGAAAAAAGAGTTGTcc > 1:275256/1‑36 (MQ=255)
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AAACGGCGTACCAGTGGCGGGTGAAGTATAGGGCATCTATTTATTCATCATTTGAAAAAAGAGTTGTCC > REL606/790840‑790908
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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