Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,909,619 | +G | 6.1% | coding (149/840 nt) | hdfR ← | transcriptional regulator HdfR |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,909,619 | 1 | .→G | 6.1% | 3.5 ‑1.5 ‑0.1 | 33 | coding (149/840 nt) | hdfR | transcriptional regulator HdfR |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (14/17): total (16/17) | ||||||||||
Fisher's exact test strand distribution p-value = 2.27e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.29e-01 |
CACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGT > REL606/3909584‑3909654
|
cACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGc < 1:4069968/36‑1 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTCTGTTGC.g > 1:136531/1‑36 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTCTGTTGC.g > 1:7390018/1‑36 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.g < 1:1451685/36‑1 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTCTGTGCC.g > 1:1468871/1‑36 (MQ=255)
ccGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.gg < 1:823796/36‑1 (MQ=255)
ccGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.gg < 1:823270/36‑1 (MQ=255)
ccGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.gg > 1:6103313/1‑36 (MQ=255)
cGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.ggg < 1:6590486/36‑1 (MQ=255)
ggCAGCGGTTAAACGGATATTGTTTCTGTGGC.gggg > 1:3837589/1‑35 (MQ=255)
gCAGCGGTTAAACGGATATTGTTTCTGTGGC.ggggg > 1:423873/1‑34 (MQ=255)
cAGCGGTTAAACGGATATTGTTTCTGTGGC.GGGTgt > 1:2899708/1‑35 (MQ=255)
cAGCGGTTAAACGGATATTGTTTCTGTGGC.GGGTGa < 1:7355110/36‑1 (MQ=255)
aacGGTTAAACGGATATTGTTTCTGTGGC.GGGTGaa < 1:6336529/34‑1 (MQ=255)
aGCGGTTAAACGGATATTGTTTCTGTGGC.GGGTgga > 1:2195657/1‑34 (MQ=255)
cGGTTAAACGGATATTGTTTCTGTGGC.GGGTGaaaa < 1:1732057/36‑1 (MQ=255)
ggTTAAACGGATATTGTTTCTGTGGC.GGGTGGAAAg > 1:6999592/1‑36 (MQ=255)
tAAACGGATATTGTTTCTGTGGCGGGGTGAAAAGGt > 1:2162278/1‑36 (MQ=37)
aaaCGGATATTGTTTCTGTGGC.GGGGGGAAAGGttt > 1:4609162/1‑35 (MQ=37)
aaCGGATATTGTTTCTGTGGCGGGGGGAAAAGGtta > 1:5889599/1‑35 (MQ=25)
aaCGGATATTGTTTCTGTGGC.GGGTTGAAAGGTTct > 1:7248423/1‑35 (MQ=37)
aaCGGATATTGTTTCTGTGGC.GGGTGAAAATGTTca < 1:7047042/36‑1 (MQ=255)
aaCGGATATTGTTTCTGTGGC.GGGTGAAAAGGTTca < 1:1677004/36‑1 (MQ=255)
aCGGATATTGTTTCTGTGGC.GGGTGAAAAAGTTtac > 1:6452558/1‑36 (MQ=37)
aCGGATATTGTTTCTGTGGC.GGGGGGAAAAGTTtac > 1:4535924/1‑36 (MQ=19)
cGGATATTGTTTCTGTGGC.GGGTGAAAAAGTTtacc > 1:2331165/1‑35 (MQ=37)
cGGATATTGTTTCAGTGGC.GGGTGAAAAGGTTcaca > 1:3233220/1‑36 (MQ=255)
ggATATTGTTTCTGTGGC.GGGTGAAAAGGTTcacgc < 1:2866831/36‑3 (MQ=255)
ggATATTGTTTCTATGGC.GGGTGAAAAGGTTCacac < 1:94589/36‑1 (MQ=255)
atatTGTTTCTGTGGC.GGGTGAAAAGGTTCACAccc < 1:1858873/36‑1 (MQ=255)
atatTGTTTCTGAGCC.GGGTGAAAAAGTTATCAccc > 1:87944/1‑36 (MQ=16)
atTGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAg < 1:5548566/36‑1 (MQ=255)
ttGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGt < 1:5894497/36‑1 (MQ=255)
tGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGtt < 1:4441405/36‑1 (MQ=255)
tGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGtt < 1:4377192/36‑1 (MQ=255)
gTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGTTg > 1:7471795/1‑36 (MQ=255)
tttCTGTGGC.GGGTGAAAAGGTTCACACCCAGTTGa < 1:7343561/36‑1 (MQ=255)
ttCTGTGGC.NGGTGAAAAGGTTCACACCCAGTTGAt < 1:4531037/36‑1 (MQ=255)
tCTGTGGC.GGGTGAAAAGGTTCACACCCAGTTGAtt < 1:2713196/36‑1 (MQ=255)
gtgGC.GGGTGAAAAGGTTCACACCCAGTTGATTTTc < 1:1410965/36‑1 (MQ=255)
tgGC.GGGTGAAAAGGTTCACACCCAGTTGATTTTcc < 1:2141430/36‑1 (MQ=255)
ggC.GGGGGAAAAGGTTCACACCCAGTTGATTTTCCa > 1:5432912/1‑36 (MQ=255)
gC.GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAg > 1:97208/1‑36 (MQ=255)
gC.GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAg > 1:4635590/1‑36 (MQ=255)
c.GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGt < 1:1194972/36‑1 (MQ=255)
c.GGATGAAAAGGTTCGCGCCCAGTTGATTTTCCAGt < 1:346181/36‑1 (MQ=25)
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CACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGT > REL606/3909584‑3909654
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|