Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 862,403 | C→A | 26.3% | L128L (CTC→CTA) | yliB → | predicted peptide transporter subunit: periplasmic‑binding component of ABC superfamily |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 862,403 | 0 | C→A | 26.3% | 6.1 ‑3.3 0.0 | 38 | 384 | yliB | predicted peptide transporter subunit: periplasmic‑binding component of ABC superfamily |
Reads supporting (aligned to +/- strand): new base (0/11): ref base (10/17): total (10/28) | ||||||||||
Fisher's exact test strand distribution p-value = 3.72e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GAAGCGATCGATCCGACAACGGTAAAGATTACCCTCAAACAGCCGTTCTCAGCGTTTATTAATATTCT > REL606/862368‑862435
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gAAGCGATCGATCCGACAACGGTAAAGATTACCCTc > 1:7478580/1‑36 (MQ=255)
gAAGCGATCGATCCGACAACGGTAAAGATTACCCTc > 1:4219859/1‑36 (MQ=255)
aaGCGATCGATCCGACAACGGTAAAGATTACCCTCa < 1:1948076/36‑1 (MQ=255)
aaGCGATCGATCCGACAACGGTAAAGATTACCCTCa > 1:350284/1‑36 (MQ=255)
aGCGATCGATCCGACAACGGTAAAGATTACCCTCaa < 1:3676516/36‑1 (MQ=255)
gCGATCGATCCGACAACGGTAAAGATTACCCTCaaa < 1:2163573/36‑1 (MQ=255)
cgatcgatCCTACAACGGTAAAGATTACCCTCAAAc < 1:4392200/36‑1 (MQ=255)
cgatcgatCCGACAACGGTAAAGATTACCCTCAAAc > 1:5940271/1‑36 (MQ=255)
tcgatcCGACAACGGTAAAGATTACCCTCAAACAGc < 1:357732/36‑1 (MQ=255)
tcgatcCGACAACGGTAAAGATTACCCTCAAACAGc < 1:3554718/36‑1 (MQ=255)
cgatcCGACAACTGTAAATATTACCCTCAAACAGcc < 1:7010116/36‑1 (MQ=37)
cgatcCGACAACGGTAAAGATTACCCTCAAACAGcc < 1:7075634/36‑1 (MQ=255)
gACAACGGTAAAGATTACCCTCAAACAGCCGTtctc < 1:7399986/36‑1 (MQ=255)
gACAACGGTAAAGATTACCCTCAAACAGCAGTtctc > 1:6155577/1‑36 (MQ=255)
aaaaCGGTAAAGATTACCCTCAAACAGCCGTTCTCa < 1:2033530/34‑1 (MQ=255)
aaaaCGGAAAAGATTACCCTAAAACAGCCGTTCTCa < 1:3083759/34‑1 (MQ=37)
aCAACGGTAAAGATTACCCTCAAACAGCCGTTCTCa < 1:3663252/36‑1 (MQ=255)
aCAACGGAAAAGATTACCCTAAAACAGCCGTTCTCa < 1:5059799/36‑1 (MQ=38)
cAACGGTAAAGATTACCCTCAAACAGCCGTTCTCAg < 1:1971476/36‑1 (MQ=255)
aaCGGTAAAGATTACCCTCAAACAGCCGTTCTCAGc > 1:1902899/1‑36 (MQ=255)
aaCGGTAAAGATTACCCTAAACCAGCCGTTCTCAGc < 1:147509/36‑1 (MQ=38)
aaCGGTAAAGATTACCCTAAAACAGCCGTTCTCAGc < 1:2382608/36‑1 (MQ=255)
cGGAAAAGATCACCCTCAAACAGCCGTTCTCAGCGt < 1:6990065/36‑1 (MQ=37)
ggaaaaGATTCCCCTAAACCAGCCGTTCTCAGCGtt < 1:1183738/33‑1 (MQ=19)
ggaaaaGAATCCCCGCAAACAGCCGTTCTCAGCGtt < 1:617786/33‑1 (MQ=19)
gTAAAGATTACCCTCAAACAGCCGTTCTCAGCGttt > 1:6147214/1‑36 (MQ=255)
gTAAAGATTACCCTAAAACAGCCGTTCTCAGCGttt < 1:5325851/36‑1 (MQ=255)
tAAAGATTACCCTCAAACAGCCGTTCTCAGCGTtta < 1:1291880/36‑1 (MQ=255)
aagaGATGACCCTCAACCAGCCGTTCTCAGCGTtta < 1:1603481/33‑1 (MQ=25)
aaaGATTACCCTCAAACAGCCGTTCTCAGCGctttt > 1:6445337/1‑34 (MQ=38)
aaaGATTACCCTCAAACAGCCGTTCTCAGCGTttat > 1:5181269/1‑36 (MQ=255)
aaaGATTACCCTCAAACAGCCGTTCTCAGCGTttat < 1:701305/36‑1 (MQ=255)
aGATTACTCTAAAACAGCCGTTCTCAGCGTttatta < 1:2764919/36‑1 (MQ=38)
aGATTACCCTCAAACAGCCGTTCTCAGCGTttatta > 1:4291911/1‑36 (MQ=255)
gATTACCCTAAAACAGCCGTTCTCAGCGTTTATTaa < 1:175859/36‑1 (MQ=255)
ttACCCTAAAACAGCCGTTCTCAGCGTTTATTAata < 1:2816685/36‑1 (MQ=255)
aCCCTAAAACAGCCGTTCTCAGCGTTTATTAATAtt < 1:3435449/36‑1 (MQ=255)
ccTCAAACAGCCGTTCTCAGCGTTTATTAATATTCt > 1:4345929/1‑36 (MQ=255)
ccTCAAACAGCCGTTCTCAGCGTTTATTAATATTCt > 1:5777440/1‑36 (MQ=255)
ccTAAAACAGCCGTTCTCAGCGTTTATTAATATTCt < 1:619553/36‑1 (MQ=255)
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GAAGCGATCGATCCGACAACGGTAAAGATTACCCTCAAACAGCCGTTCTCAGCGTTTATTAATATTCT > REL606/862368‑862435
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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