Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,524,719 | T→A | 7.4% | S37T (TCC→ACC) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,524,719 | 0 | T→A | 7.4% | 5.8 ‑3.4 ‑0.0 | 54 | 109 | fdnH | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (20/30): total (24/30) | ||||||||||
Fisher's exact test strand distribution p-value = 3.36e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.54e-01 |
ATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGCG > REL606/1524684‑1524754
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aTTACAAAGCAGAAGTCGCAAAACTTATCGACGttt > 1:8337/1‑36 (MQ=255)
aTTACAAAGCAGAAGTCGCAAAACTTATCGACGttt > 1:1358155/1‑36 (MQ=255)
taaaaaGCAGAAGTCGCTAAACTTATCGACGTTTcc < 1:5911187/33‑1 (MQ=38)
tACAAAGCAGAAGTCGCAAAACTTATCGACGTTTcc < 1:7652710/36‑1 (MQ=255)
tACAAAGCAGAAGTCGCAAAACTTATCGACGTTTcc > 1:5008019/1‑36 (MQ=255)
tACAAAGCAGAAGGCGCAAAACTTATCGACGtttac > 1:1397292/1‑34 (MQ=38)
aCAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCa < 1:2343752/36‑1 (MQ=255)
cAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCAc < 1:3979957/36‑1 (MQ=255)
aaaGCAGAAGTCGCAAAACTTATCGACGTTTCCAcc < 1:4430199/36‑1 (MQ=255)
aaGCAGAAGTCGCAAAACTTATCGACGTTTCCACCt < 1:2342097/36‑1 (MQ=255)
aaGCAGAAGTCGCAAAACTTATCGACGTTTCCACCt > 1:1271256/1‑36 (MQ=255)
aGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTg < 1:6515724/36‑1 (MQ=255)
aGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTg > 1:5886344/1‑36 (MQ=255)
gCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGt > 1:7498719/1‑36 (MQ=255)
cAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTa < 1:6743106/36‑1 (MQ=255)
aGAAGTCGCAAAACTTATCGACGTTTCCACCTGTAt < 1:7100347/36‑1 (MQ=255)
gAAGTCGCAAAACTTATCGACGTTTCCACCTGTATc > 1:4315616/1‑36 (MQ=255)
aGTCGCAAAACTTATCGACGTTTCCACCTGTATCgg < 1:5208451/36‑1 (MQ=255)
gTCGCAAAACTTATCGACGTTTCCACCTGTATCGGc < 1:5667992/36‑1 (MQ=255)
gTCGCAAAACTTATCGACGTTTCCACCTGTATCGGc < 1:548678/36‑1 (MQ=255)
tCGCAAAACTTATCGACGTTTCCACCTGTATCGGCt < 1:2402946/36‑1 (MQ=255)
tCGAAAAACTTATCGACGTTTCCACCTGTATCGGCt < 1:4489421/36‑1 (MQ=255)
acGCGAAGCTTATCGACGTTTCCACCTATATCGGCt < 1:5902956/35‑1 (MQ=14)
cGCAAAACTTATCGACGTTTCCACCTGTATCGGCTg < 1:4049262/36‑1 (MQ=255)
gCAAAACTTATCGACGTTTCCACCTGTATCGGCTgg > 1:100201/1‑35 (MQ=255)
gCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt < 1:1521721/36‑1 (MQ=255)
gCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt > 1:3359224/1‑36 (MQ=255)
cAAAACTTATCGACGTTTCCACCTGTATCGGCTGtt > 1:6915303/1‑35 (MQ=255)
aaaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aa < 1:1397198/36‑1 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.taa > 1:7484211/1‑36 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aaa < 1:1478245/36‑1 (MQ=255)
aaaCTTATCGACGTTTCCACCTGTATCGGCTGT.aaa < 1:1837302/36‑1 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.TAAg > 1:6623378/1‑36 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAg < 1:2512765/36‑1 (MQ=255)
aaCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAg < 1:61850/36‑1 (MQ=255)
aCTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGc < 1:3758079/36‑1 (MQ=255)
aCTTATCGACGTTTCCACCTGTATCGGCTGG.TAAGc > 1:2142534/1‑36 (MQ=17)
aCTCATCGACGTTACCACCTGTATCGGCTGT.taaac > 1:2713/1‑34 (MQ=17)
cTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGcc < 1:6732450/36‑1 (MQ=255)
cTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGcc < 1:1683190/36‑1 (MQ=255)
tcaTCGACGTTACCACCTGTATCGGCTGTGAAAGct > 1:5418475/3‑35 (MQ=17)
tcaTCGACGTTACCACCTGTATCGGCTGTGAAAGct > 1:3784773/3‑35 (MQ=17)
tATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTg < 1:7067727/36‑1 (MQ=40)
aTCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGt < 1:7462499/36‑1 (MQ=38)
tCGACGTTTCCACCTGTATCGGCTGT.TAAGCCTGTc > 1:3870989/1‑36 (MQ=255)
tCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTc < 1:1225770/36‑1 (MQ=38)
tCGACGTTTCCACCTGTATCGGCTGG.GAAGCCTTTc > 1:5763801/1‑36 (MQ=14)
cggcGTTTCCACCTGTATCTGCCGT.AAAGCCTGTCa < 1:1572591/33‑1 (MQ=14)
cGACGTTTCCACCTGTATCGGCTGT.AAAGCCTTTct > 1:4968419/1‑35 (MQ=255)
gACGTTTCCACCTGTATCGGCTGT.AAAAGCTGTCAg > 1:3812951/1‑36 (MQ=14)
gACGTTACCACCTGTATCGGCTGT.CAATGCTGTGAg > 1:7817899/1‑36 (MQ=9)
aCGTTTCCACCTGTATCGGCTGT.AAAACCTTTCCgg > 1:3415054/1‑36 (MQ=14)
cGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGt < 1:3733389/36‑1 (MQ=38)
gTTTCCACCTGTATCGGCTGT.TAAGACTGTCAgggg > 1:6251438/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGT.AAAGCCTTTCAgggg > 1:169607/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGT.AAAACCTGTCAgggg > 1:6249114/1‑34 (MQ=14)
gTTTCCACCTGTATCGGCTGG.TAAGCCTGTTAgggg > 1:6177761/1‑34 (MQ=14)
tttCCTCCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:3721980/36‑1 (MQ=255)
tttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:2435315/36‑1 (MQ=38)
tttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTgg < 1:3467384/36‑1 (MQ=38)
ttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGc < 1:3600150/36‑1 (MQ=35)
ttCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGc > 1:2761321/1‑36 (MQ=35)
tCCACCTGTATCGGCTGT.AAAACCTGTCAGGTgggg > 1:5035737/1‑34 (MQ=11)
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ATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGT.AAAGCCTGTCAGGTGGCG > REL606/1524684‑1524754
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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