New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 208161438 (0.800)6 (0.130) 4/58 NT 11.5% coding (755/1353 nt) yegD predicted chaperone
?REL606 4281474 = 54 (0.940)coding (427/2052 nt) yjcQ predicted multidrug efflux system component

GCGCACGACCACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATAGCGACAATGGCGACG  >  REL606/4281439‑4281508
                                   |                                  
agcctgctgggtcacagtggttgtcgtattggcggg                                    >  1:2990553‑M2/36‑36 (MQ=255)
 gcctgctgggtcacagtggttgtcgtattggcgggg                                   >  1:5425545‑M2/35‑36 (MQ=255)
 cgcACTACCACTTCCGGATAGTCGAGCATGGCgggg                                   <  1:3244471/36‑1 (MQ=255)
 cgcACGACCACTTCCGGATAGTCGAGCATGGCgggg                                   <  1:1602910/36‑1 (MQ=255)
 cgcACGACCACTTCCGGATAGTCGAGCATGGCgggg                                   <  1:2410823/36‑1 (MQ=255)
 cgcACGACCACTTCCGGATAGTCGAGCATGGCgggg                                   >  1:4835707/1‑36 (MQ=255)
  gcACGACCACTTCCGGATAGTCGAGCATGGCggggg                                  >  1:2237670/1‑35 (MQ=255)
  gcACGACCACTTCCGGATAGTCGAGCATGGCGGGGa                                  <  1:1883563/36‑1 (MQ=255)
  gcACGACCACTTCCGGATAGTCGAGCATGGCGGGGa                                  >  1:4800706/1‑36 (MQ=255)
  gcACGACCACTTCCGGATAGTCGAGCATGGCGGGGa                                  <  1:2527513/36‑1 (MQ=255)
   ctgctgggtcacagtggttgtcgtattggcgggctt                                 >  1:5631277‑M2/33‑33 (MQ=255)
   cACGACCACTTCCGGATAGTCGAGCATGGCggggca                                 >  1:2614376/1‑34 (MQ=255)
   cACGACCACTTCCGGATAGTCGAGCATGGCGGGGaa                                 <  1:5376242/36‑1 (MQ=255)
   cACGACCACTTCCGGATAGTCGAGCATGGCGGGGaa                                 <  1:2100153/36‑1 (MQ=255)
    aCGACCACTTCCGGATAGTCGAGCATGGCGGGGGAg                                >  1:4929932/1‑36 (MQ=255)
    aCGACCACTTCCGGATAGTCGAGCATGGCGGGGAAg                                <  1:4432322/36‑1 (MQ=255)
     cGACCACTTCCGGATAGTCGAGCATGGCGGGGGAgg                               >  1:2822505/1‑36 (MQ=255)
      gACCACTTCCGGATAGTCGAGCATGGCGGGGGAGGt                              >  1:6943944/1‑36 (MQ=255)
      gACCACTTCCGGATAGTCGAGCATGGCGGGGAAGGt                              >  1:2231919/1‑36 (MQ=255)
      gACCAATTCCGGATAGTCGAGCATGGCGGGGGAGGt                              >  1:6317519/1‑36 (MQ=38)
      ctgggtcacagtggttgtcgtattggcggGGTaggg                              >  1:6591588‑M2/30‑35 (MQ=255)
       tgggtcacagtggttgtcgtattggcggGGAAGGtt                             >  1:5154195‑M2/29‑36 (MQ=255)
        ccACTTCCGGATAGTCGAGCATGGCGGGGAAGGttt                            <  1:7085444/36‑1 (MQ=255)
         ggtcacagtggttgtcgtattggcggGGAAGGTCTg                           >  1:3828513‑M2/27‑36 (MQ=255)
         cACTTCCGGGTAGGCGAGCATGGCGGGGAAGGTTTg                           <  1:3772266/36‑1 (MQ=38)
         cACTTCCGGATAGTCGAGCATGGCGGGGGAGGTTTg                           >  1:1025856/1‑36 (MQ=255)
         cACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTg                           <  1:5786039/36‑1 (MQ=255)
         cACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTg                           <  1:5798560/36‑1 (MQ=255)
         cACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTg                           >  1:4827461/1‑36 (MQ=255)
         cACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTg                           <  1:4495540/36‑1 (MQ=255)
         cACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTg                           <  1:1231090/36‑1 (MQ=255)
          aCTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTGc                          <  1:2582079/36‑1 (MQ=255)
            ttCCGGATAGTCGAGCATGGCGGGGAAGGTTTGccc                        >  1:1296513/1‑36 (MQ=255)
             tCCGGATAGTCGAGCATGGCGGGGAAGGTTTTCCCg                       >  1:3458484/1‑36 (MQ=255)
             tCCGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCg                       <  1:962225/36‑1 (MQ=255)
             tCCGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCg                       <  1:3610915/36‑1 (MQ=255)
              ccGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCGt                      <  1:3574480/36‑1 (MQ=255)
              ccGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCGt                      <  1:7152185/36‑1 (MQ=255)
               cGGATAGTCGAGCGTGGCGGGGAAGGTTTGCCCGTa                     <  1:4826039/36‑1 (MQ=255)
               cGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCGTa                     <  1:959297/36‑1 (MQ=255)
                ggATAGTCGAGCATGGCGGGGAAGGTTTGTCCGTaa                    >  1:6233321/1‑36 (MQ=255)
                ggATAGTCGAGCATGGCGGGGAAGGTTTGCCCGTaa                    >  1:236062/1‑36 (MQ=255)
                 gATGGTCGAGGATGGCGGGGAAGGTTTGCCCGTgaa                   <  1:2258962/36‑1 (MQ=21)
                  aTAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAAt                  <  1:767135/36‑1 (MQ=255)
                  aTAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAAt                  <  1:5104460/36‑1 (MQ=255)
                   tAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATa                 <  1:3507791/36‑1 (MQ=255)
                   tAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATa                 <  1:334119/36‑1 (MQ=255)
                   tAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATa                 <  1:2804491/36‑1 (MQ=255)
                    aGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATAg                >  1:5501217/1‑36 (MQ=255)
                     gTCGAGCATGGCGGGGGAGGTTTGCCCGTAAATAGc               >  1:2451082/1‑36 (MQ=255)
                     gTCGAGCATGGCGGGGCAGGTTTGCCCGTAAATAGc               >  1:376459/1‑36 (MQ=255)
                     gTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATAGc               >  1:7011718/1‑36 (MQ=255)
                     gTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATAGc               <  1:2800283/36‑1 (MQ=255)
                       cGAGCATGGCGGGGAAGGTTTGCCCGTAAATAGCGa             >  1:4270564/1‑36 (MQ=255)
                        gAGCATGGCGGGGAAGGTTTGCCCGTAAATAGCGAc            >  1:2014340/1‑36 (MQ=255)
                         aGCATGGCGGGGAAGGTTTGCCCGTAAATAGCGACa           <  1:6255179/36‑1 (MQ=255)
                          gCATGGCGGGGAAGGTTTGCCCGTAAATAGCGACaa          >  1:2088121/1‑36 (MQ=255)
                          gCATGGCGGGGAAGGTTTGCCCGTAAATAGCGACaa          >  1:443031/1‑36 (MQ=255)
                           cATGGCGGGGAAGGTTTGCCCGTAAATAGCGACAAt         <  1:2454696/36‑1 (MQ=255)
                              ggcggGGAAGGTTTGCCCGTAAATAGCGACAATGGc      <  1:3790838‑M2/31‑1 (MQ=255)
                               gcggGGAAGGTTTGCCCGTAAATAGCGACAATGGCg     <  1:6192776‑M2/32‑1 (MQ=255)
                                 ggGGAAGGTTTGCCCGTAAATAGCGACAATGGCGAc   >  1:6553071‑M2/3‑36 (MQ=255)
                                 ggGGAAGGTTTGCCCGTAAATAGCGACAATGGCGAc   <  1:4640051‑M2/34‑1 (MQ=255)
                                 ggGGAAGGTTTGCCCGTAAATAGCGACAATGGCGAc   <  1:2087705‑M2/34‑1 (MQ=255)
                                  gggAAGGTTTGCCCGTAAATAGCGACAATGGTGaag  >  1:4157321/1‑34 (MQ=37)
                                  gGGAAGGTTTGCGCGTAAATAGCGACAATGGCGACg  <  1:7503895‑M2/35‑1 (MQ=255)
                                  gGGAAGGTTTGCCCGTAAATAGCGACAATGGCGACg  <  1:5620505‑M2/35‑1 (MQ=255)
                                  gGGAAGGTTTGCCCGTAAATAGCGACAATGGCGACg  >  1:3705480‑M2/2‑36 (MQ=255)
                                   |                                  
GCGCACGACCACTTCCGGATAGTCGAGCATGGCGGGGAAGGTTTGCCCGTAAATAGCGACAATGGCGACG  >  REL606/4281439‑4281508

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG