breseq  version 0.24  revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,724,2660C→A14.1% 12.3 ‑15.1 0.096360srlRDNA‑bindng transcriptional repressor
*REL606293,9420G→T16.8% 10.7 ‑10.6 ‑0.062intergenic (+212/‑315)ykgD/ykgEpredicted DNA‑binding transcriptional regulator/predicted oxidoreductase
*REL6063,190,6530A→G17.0% 7.9 ‑18.6 0.068328yhaOpredicted transporter
*REL6062,735,9940C→G13.2% 5.8 ‑13.4 0.073145ascBcryptic 6‑phospho‑beta‑glucosidase
*REL6062,756,5880C→T11.0% 4.8 ‑9.0 0.077299ygbJpredicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
*REL6062,864,0660C→T12.8% 4.3 ‑7.1 0.061intergenic (‑469/‑216)ygdP/mutHdinucleoside polyphosphate hydrolase/DNA mismatch repair protein
*REL6063,398,1000C→T100.0% 3.5 31135tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6064,211,0871.→G 4.0% 2.9 ‑0.7 ‑0.150coding (1078/1350 nt)lysCaspartate kinase III
*REL6062,768,2030G→T 9.5% 2.5 ‑10.4 0.085intergenic (‑5/+45)ygbE/cysCconserved inner membrane protein/adenylylsulfate kinase
*REL6063,781,0760G→T 9.6% 1.9 ‑9.1 0.0701108ECB_03520conserved hypothetical protein
*REL6062,756,5790T→G13.6% 1.6 ‑14.7 0.098290ygbJpredicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
*REL606462,9140T→A 7.8% 1.2 ‑9.1 0.054intergenic (‑35/‑35)priC/ybaNprimosomal replication protein N''/conserved inner membrane protein
*REL6063,883,2171.→C 5.4% 1.2 ‑2.1 ‑0.037intergenic (‑411/+206)atpI/gidBF0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1
*REL6063,038,4580G→. 3.6% 1.0 0.0 ‑0.955coding (537/2061 nt)ECB_02838GspD, hypothetical type II secretion protein
*REL6063,947,7970A→G 5.4% 0.9 0.0 ‑0.25510aslAacrylsulfatase‑like enzyme
*REL6061,887,4650G→T 5.4% 0.8 ‑0.5 ‑0.155intergenic (‑121/‑38)yobG/ECB_01797hypothetical protein/hypothetical protein
*REL6062,008,8671.→G 4.6% 0.8 ‑2.3 ‑0.043intergenic (+164/+125)ECB_01908/yoeDhypothetical protein/conserved hypothetical protein
*REL6061,270,5930T→C100.0% 0.6 1intergenic (‑100/+305)ldrC/chaAtoxic polypeptide, small/calcium/sodium:proton antiporter
*REL6061,393,5951.→A 5.0% 0.6 ‑4.0 ‑0.040coding (697/1032 nt)ynaIconserved inner membrane protein
*REL6064,341,8140C→T 7.5% 0.6 ‑3.7 ‑0.060216yjdCpredicted transcriptional regulator
*REL606573,2130G→T100.0% 0.2 2276ECB_00530conserved hypothetical protein
*REL6061,499,0930T→G100.0% 0.2 21010ECB_01413conserved hypothetical protein
*REL6061,733,6490A→C 4.6% 0.2 ‑1.9 ‑0.097685pykFpyruvate kinase
*REL6062,585,8130C→A 7.7% 0.2 ‑5.9 ‑0.057752yfhRpredicted peptidase
*REL6062,842,2420C→G100.0% 0.2 1noncoding (17/77 nt)metVtRNA‑Met
*REL606568,9580C→G100.0% 0.1 2979yhhIpredicted transposase
*REL606931,9300C→G100.0% 0.1 1intergenic (‑366/+129)ybjE/aqpZpredicted transporter/aquaporin Z
*REL6061,600,5740T→G100.0% 0.1 1intergenic (‑522/‑231)ydfJ/ydfKpredicted transporter/predicted DNA‑binding transcriptional regulator
*REL6061,600,5790A→T100.0% 0.1 1intergenic (‑527/‑226)ydfJ/ydfKpredicted transporter/predicted DNA‑binding transcriptional regulator
*REL6062,760,3690C→A 8.3% 0.1 ‑8.1 0.065408ygbNpredicted transporter
*REL6062,774,9970G→T100.0% 0.1 11316insK‑3IS150 putative transposase
*REL606573,2100C→T100.0% 0.0 2279ECB_00530conserved hypothetical protein
*REL6061,111,2900C→G100.0% 0.0 386insF‑1putative transposase for IS3
*REL6062,650,1440A→C100.0% 0.0 2noncoding (534/2906 nt)rrlG23S ribosomal RNA
*REL606429,5670C→A100.0% ‑0.1 1intergenic (+162/+108)clpX/insL‑2ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186
*REL606429,7120A→G100.0% ‑0.1 11076insL‑2putative transposase insL for insertion sequence IS186
*REL606429,9920C→A100.0% ‑0.1 1796insL‑2putative transposase insL for insertion sequence IS186
*REL606430,0700C→G100.0% ‑0.1 2718insL‑2putative transposase insL for insertion sequence IS186
*REL606430,1350A→C100.0% ‑0.1 1653insL‑2putative transposase insL for insertion sequence IS186
*REL606430,1530A→C100.0% ‑0.1 1635insL‑2putative transposase insL for insertion sequence IS186
*REL606430,4340T→G100.0% ‑0.1 1354insL‑2putative transposase insL for insertion sequence IS186
*REL606430,5340G→C100.0% ‑0.1 1254insL‑2putative transposase insL for insertion sequence IS186