Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,806,030 | C→A | 17.9% | E324* (GAA→TAA) | astD ← | succinylglutamic semialdehyde dehydrogenase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,806,030 | 0 | C→A | 17.9% | 3.0 ‑2.4 ‑0.0 | 37 | 970 | astD | succinylglutamic semialdehyde dehydrogenase |
Reads supporting (aligned to +/- strand): new base (2/5): ref base (20/10): total (22/15) | ||||||||||
Fisher's exact test strand distribution p-value = 9.53e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.87e-01 |
TGCCAGGCAGTAACCACCTGCTGTGCGGCCTGTTCAGAAATCAGCCCGCCAATAAACGGCTGCGGTTC > REL606/1805996‑1806063
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tgcCAGGCAGTAACCACCTGCTGTGCGGCCTGTTCa > 1:2330623/1‑36 (MQ=255)
cAGGCAGTAACCACCTGCTGTGCGGCCTGTTCAGaa > 1:3237899/1‑36 (MQ=255)
aGGCAGTAACCACCTGCTGTGCGGCCTGTTCAGaaa > 1:3958845/1‑36 (MQ=255)
aGGCAGTAACCACCTGCTGTGCGGCCTGTTCAGaaa < 1:2096694/36‑1 (MQ=255)
ggCAGTAACCACCTGCTGTGCGGCCTGTTCAGAAAt < 1:2500274/36‑1 (MQ=255)
gCAGTAACGACCTGCTGTGCGGCCTGTTCAGAAATc < 1:7466310/36‑1 (MQ=255)
gCAGTAACCACCTGCTGTGCGGCCTGTTCAGAAATc < 1:2087551/36‑1 (MQ=255)
gCAGTAACCACCTGCTGTGCGGCCTGTTCAGAAATc > 1:6713708/1‑36 (MQ=255)
cAGTAACCACCTGCTGTGCGGCCTGTTCAGAAATCa > 1:1164751/1‑36 (MQ=255)
aGTAACCACCTGCTGTGCGGCCTGTTCAGAAATCAg > 1:3727028/1‑36 (MQ=255)
aGTAACCACCTGCTGTGCGGCATGTTCAGAAATCAg > 1:1261862/1‑36 (MQ=255)
gTAACCACCTGCTGTGCGGCCTGTTCAGAAATCAGc < 1:4485406/36‑1 (MQ=255)
tAACCACCTGCTATGCGGCCTGTTCAGAAATCAGcc < 1:5916301/36‑1 (MQ=255)
aaCCACCTGCTGTGCGGCCTGTTCAGAAATCAGccc > 1:7375884/1‑36 (MQ=255)
accaccTGCTGGGCGGCCTGTTCAGAAATCAGCCCg > 1:1184609/1‑36 (MQ=255)
ccaccTGCTGTGCGGCCTGTTCAGAAATCAGCCCGc > 1:2736736/1‑36 (MQ=255)
caccTACTGTGCGGCCTTTTCAGAAATCAGCCCGcc < 1:173417/36‑1 (MQ=37)
accTGCTGTGCGGCCTGTTCAGAAATCAGCCCGCCa > 1:1699876/1‑36 (MQ=255)
ccTGCTGTGCGGCCTGTTCAGAAATCAGCCCGCCaa < 1:605102/36‑1 (MQ=255)
agctgTGCGGCTTGTTCAGAAAACAGCCCGCCAATa < 1:6750578/35‑1 (MQ=37)
gctgTGCGGCCTGTTCAGAAATCAGCCCGCCAATaa > 1:2415323/1‑36 (MQ=255)
gctgTGCGGCCTGTTAAAAAATCAGCCCGCCAATaa < 1:5387135/36‑1 (MQ=37)
ctgTGCGGCCTGTTCAGAAATCATCCAGCCAATaaa > 1:6031788/1‑36 (MQ=37)
ctgTGCGGCCTGTTCAGAAATCAGCCCGCCAATaaa > 1:3700810/1‑36 (MQ=255)
tgtgCGGCTTGTTAAAAAATCACCCCGCCAATAAAc < 1:3295211/36‑1 (MQ=19)
tgtgCGGCCTGTTCAGAAATCAGCCCGCCAATAAAc > 1:4578362/1‑36 (MQ=255)
tgtgCGGCCTGTTAAGAAATCAGCCCGCCAATAAAc < 1:91604/36‑1 (MQ=255)
tgtaCGGCATGTACAAAAACCAGCCCGCCAATAAAc < 1:4077083/36‑1 (MQ=12)
cGGCCTGTTAAGAAATCAGCCCGCCAATAAACGGCt < 1:2208523/36‑1 (MQ=255)
cGGCCTGTAAAAAAATCAGCCCGCCAATAAACGGCt < 1:2706157/36‑1 (MQ=21)
ggCCTGTTAAGAAATCAGCCCGCCAATAAACGGCTg > 1:515297/1‑36 (MQ=255)
ccTGTTCAGAAATCAGCCCGCCAATAAACGGCTGCg > 1:3620125/1‑36 (MQ=255)
cTGTTCAGAAATCAGCCCGCCAATAAACGGCTGCgg > 1:474497/1‑36 (MQ=255)
cTGTTAAGAAATCAGCCCGCCAATAAACGGCTGCgg > 1:4192385/1‑36 (MQ=255)
tGTTCAGAAATCAGCCCGCCAATAAACGGCTGCGGt > 1:5298339/1‑36 (MQ=255)
gTTCAGAAATCAGCCCGCCAATAAACGGCTGCGGtt > 1:2373794/1‑36 (MQ=255)
ttCAGAAATCAGCCCGCCAATAAACGGCTGCGGTTc > 1:1376873/1‑36 (MQ=255)
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TGCCAGGCAGTAACCACCTGCTGTGCGGCCTGTTCAGAAATCAGCCCGCCAATAAACGGCTGCGGTTC > REL606/1805996‑1806063
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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