Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,341,364 | G→A | 19.9% | intergenic (+9/+117) | yciH → / ← osmB | translation intiation factor Sui1/lipoprotein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,341,364 | 0 | G→A | 19.9% | 4.4 ‑3.2 0.0 | 25 | intergenic (+9/+117) | yciH/osmB | translation intiation factor Sui1/lipoprotein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (8/11): total (13/12) | ||||||||||
Fisher's exact test strand distribution p-value = 4.11e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GAAGGTAAAACTCGCAGGCGGTTAACATAAAAAGCCACGGATATATCCGTGGCTTTCGAATATTTTACT > REL606/1341331‑1341399
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gAAGGTAAAACTCGCAGGCGGTTAACATAAAAAGcc < 1:3027582/36‑1 (MQ=255)
gAAGGTAAAACTCGCAGGCGGTTAACATAAAAAAcc > 1:5795931/1‑36 (MQ=255)
aaGGTAAAACTCGCAGGCGGTTTAAATAAAAAAccc > 1:2784269/1‑35 (MQ=25)
aGGTAAAACTCGCAGGCGGTTAACATAAAAAGCCAc < 1:8091222/36‑1 (MQ=255)
aGGTAAAACTCGCAGGCGGTTAACATAAAAAGCCAc < 1:2979790/36‑1 (MQ=255)
gTAAAACTCGCAGGCGGTTAACATAAAAAGCCACgg < 1:6108591/36‑1 (MQ=255)
tAAAACTCGCAGGCGGTTAAAATAAAAAACCACGGa > 1:1798385/1‑36 (MQ=37)
aCTCGCAGGCGGTTAACATAAAAAGCCACGGatata < 1:4188613/36‑1 (MQ=255)
tCGCAGGCGGTTTACATAAAAAACCACCGATATATc > 1:4969405/1‑36 (MQ=25)
tCGCAGGCGGTTAACAAAAAAAACCCCGGGTATATc > 1:2410473/1‑36 (MQ=19)
cGCAGGCGGTTAAAATAAAAAGCCACGGATATATcc < 1:3418122/36‑1 (MQ=255)
cAGGCGGTTAACATAAAAAGCCACGGATATATCCGt > 1:3100162/1‑36 (MQ=255)
cAGGCGGTTAACATAAAAAGCCACGGATATATCCGt > 1:3105889/1‑36 (MQ=255)
ggCGGTTAACATAAAAAGCCACGGATATATCCGTgg < 1:3167647/36‑1 (MQ=255)
ggCGGTTAACATAAAAAGCCACGGATATATCCGTgg > 1:6055023/1‑36 (MQ=255)
gTTAACATAAAAAGCCACGGATATATCCGTGGCttt > 1:7935449/1‑36 (MQ=255)
gTTAACATAAAAAGCCACGGATATATCCGTGGCttt < 1:1581457/36‑1 (MQ=255)
ttAACATAAAAAGCCACGTATATATCCGTGGCTTTc < 1:1767626/36‑1 (MQ=255)
ttAACATAAAAAGCCACGGATATATCCGTGGCTTTc > 1:3841723/1‑36 (MQ=255)
ttAACATAAAAAGCCACGGATATAGCCGTGGAtttt > 1:3737652/1‑35 (MQ=18)
cATAAAAAGCCACGGATATATCCGTGGCTTTCGAat < 1:4672045/36‑1 (MQ=255)
cATAAAAAGCCACGGATATATCCGTGGCTTTCGAat > 1:6789345/1‑36 (MQ=255)
aaTAAAAATTCACGGATATATCCGTGGCTTTCGAat < 1:5262213/35‑1 (MQ=18)
aaTAAAAAGCCACGGATATATCCGTGGCTTTCGAat < 1:427274/35‑1 (MQ=255)
aaaaaGCCACGGATATATCCGTGGCTTTCGAATAtt > 1:4667629/1‑36 (MQ=255)
gCCACGGATATATCCGTGGCTTTCGAATATTTTACt < 1:2178887/36‑1 (MQ=255)
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GAAGGTAAAACTCGCAGGCGGTTAACATAAAAAGCCACGGATATATCCGTGGCTTTCGAATATTTTACT > REL606/1341331‑1341399
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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