New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640118 =35 (0.650)11 (0.200) 6/62 NT 21.8% intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 3995534 = 44 (0.720)coding (54/768 nt) ECB_03724 putative transcriptional regulator

TCATGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCGGTGGT  >  REL606/3995499‑3995569
                                   |                                   
tCATGGCAGCCGTTATAAACAGCATTAAGAACCGcc                                     >  1:7218556/1‑36 (MQ=255)
tCATGGCAGCCGTTATAAACAGCATTAAGAACCGcc                                     >  1:5686505/1‑36 (MQ=255)
 cATGGCAGCCGTTATAAACAGCATTAAGAACCGCCa                                    >  1:1481220/1‑36 (MQ=255)
  aTGGCAGCCGTTATAAACAGCATTAAGAACCGCCAg                                   >  1:6741103/1‑36 (MQ=255)
   tGGAAGCCGTTATAAACAGCATTAAGAACCGCCAGt                                  >  1:4450914/1‑36 (MQ=255)
     gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                                >  1:773126/1‑36 (MQ=255)
     gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                                >  1:3442116/1‑36 (MQ=255)
     gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                                >  1:3813150/1‑36 (MQ=255)
     gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                                >  1:3853753/1‑36 (MQ=255)
     gCAGCCGTTATAAACAGCATTAAGAACCGCCAGTcc                                >  1:2556390/1‑36 (MQ=255)
      cAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCa                               >  1:4896333/1‑36 (MQ=255)
       aGCCGTTATAAACAGCATTAAGAACCGCCAGTCCAc                              >  1:80226/1‑36 (MQ=255)
       aGCCGTTATAAACAGCATTAAGAACCGCCAGTCCAc                              >  1:7336250/1‑36 (MQ=255)
       aGCCGTTAGAAATAGCATTAAGAACAGCAAGTGCAc                              >  1:1899635/1‑36 (MQ=12)
         ccGTTATAAACAGCATTAAGAACCGCCAGTCCACGt                            >  1:2446241/1‑36 (MQ=255)
         ccGTTATAAACAGCATTAAGAACCGCCAGTCCACGt                            >  1:4810961/1‑36 (MQ=255)
          cGTTATAAACAGCATTAAGAACTGCAAGTCCACGta                           >  1:6928483/1‑36 (MQ=37)
           gTTATAAACAGCATTAAGAACCGCCAGTCCACGtaa                          >  1:761934/1‑36 (MQ=255)
             tataAACAGCATTAAGAACCGCCAGTCCACGtaata                        >  1:2894944/1‑36 (MQ=255)
             tataAACAGCATTAAGAACCGCCAGTCCACGtaata                        >  1:937117/1‑36 (MQ=255)
              ataAACAGCATTAAGAACCGCCAGTCCACGtaataa                       >  1:76814/1‑36 (MQ=255)
              ataAACAGCATTAAGAACCGCCAGTCCACGtaataa                       >  1:2391200/1‑36 (MQ=255)
               taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                      >  1:4791230/1‑36 (MQ=255)
               taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                      >  1:4811995/1‑36 (MQ=255)
               taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                      >  1:7449045/1‑36 (MQ=255)
               taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                      >  1:7913686/1‑36 (MQ=255)
               taAACAGCATTAAGAACCGCCAGTCCACGTAATAAc                      >  1:2123711/1‑36 (MQ=255)
                aaaCAGCATTAAGAACCGCCAGTCCACGTAATAACg                     >  1:5968181/1‑36 (MQ=255)
                aaaCAGCATTAAGAACCGCCAGTCCACGTAATAACg                     >  1:4236001/1‑36 (MQ=255)
                aaaCAGCATTAAGAACCGCCAGTCCACGTAATAACg                     >  1:5070129/1‑36 (MQ=255)
                  aaaaaaaaaaaacccgcCAGTCCACGTAATAACGtt                   <  1:3661206‑M2/19‑1 (MQ=255)
                  aaaaaaaaaaaacccgcCAGTCCACGTAATAACGtt                   <  1:4497727‑M2/19‑1 (MQ=255)
                  aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt                   >  1:7861074/1‑36 (MQ=255)
                  aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt                   >  1:2614086/1‑36 (MQ=255)
                  aCAGCATTAAGAACCGCCAGTCCACGTAATAACGtt                   >  1:13988/1‑36 (MQ=255)
                   cAGCATTAAGAACCGCCAGTCCACGTAATAACGttt                  >  1:280550/1‑36 (MQ=255)
                   cAGCATTAAGAACCGCCAGTCCACGGAAGAACGttg                  >  1:6522576/1‑35 (MQ=25)
                    aGCATTAAGAACCGCCAGTCCACGTAATAACGTTtg                 >  1:6702295/1‑36 (MQ=255)
                    aGCATTAAGAACCGCCAGTCCACGTAATAACGTGtg                 >  1:5411614/1‑36 (MQ=255)
                     aaaaaaaaacccgcCAGTCCACGTAATAACGTTtgt                <  1:5831799‑M2/22‑1 (MQ=255)
                      aaaaaaaacccgcCAGTCCACGTAATAACGTTtgtg               <  1:4229276‑M2/23‑1 (MQ=255)
                       aaaaaaacccgcCAGTCCACGTAATAACGTTTGTgc              <  1:612949‑M2/24‑1 (MQ=255)
                       aTTAAGAACCGCCAGTCCACGTAATAACGTTTGTgc              >  1:6621832/1‑36 (MQ=255)
                        ttAAGAACCGCCAGTCCACGTAATAACGTTTGTgcg             >  1:631981/1‑36 (MQ=255)
                         tAAGAACCGCCAGTCCACGTAATAACGTTTGTgcgc            >  1:3712408/1‑36 (MQ=255)
                         aaaaccccgcCAGTCCACGTAATAACGTTTGTgcgc            <  1:1237183‑M2/26‑1 (MQ=255)
                          aacacccgcCAGTCCACGTAATAACGTTTGTGCGcc           <  1:1537197‑M2/27‑1 (MQ=255)
                          aaGAACCGCCAGTCCACGTAATAACGCTTGTGCGcc           >  1:4490298/1‑36 (MQ=255)
                          aaGAACCGCCAGCCCACGTAATAACGTTTGTGCGcc           >  1:7335654/1‑36 (MQ=255)
                           acacccgcCAGTCCACGTAATAACGTTTGTGCGCCt          <  1:3414562‑M2/28‑1 (MQ=255)
                           aacaCCGCCAGTCCACGTAATAACGTTTGTGCGCCt          <  1:5145512/33‑1 (MQ=255)
                           aaacccgcCAGTCCACGTAATAACGTTTGTGCGCCt          <  1:1200583‑M2/28‑1 (MQ=255)
                            gAACCGCCAGTCCACGTAATAACGTTTGTGCGCCTg         >  1:3945226/1‑36 (MQ=255)
                            cacccgcCAGTCCACGTAATAACGTTTGTGCGCCTg         <  1:2838330‑M2/29‑1 (MQ=255)
                             aaCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGc        >  1:2941048/1‑36 (MQ=255)
                              cccgcCAGTCCACGTAATAACGTTTGTGCGCCTGCg       <  1:285378‑M2/31‑1 (MQ=255)
                              aCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg       >  1:1743031/1‑36 (MQ=255)
                              aCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg       >  1:6791022/1‑36 (MQ=255)
                              aCCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCg       >  1:4330734/1‑36 (MQ=255)
                               ccgcCAGTCCACGTAATAACGTTTGTGCGCCTGCgg      <  1:2748857‑M2/32‑1 (MQ=255)
                               ccgcCAGTCCACGTAATAACGTTTGTGCGCCTGCgg      <  1:2195574‑M2/32‑1 (MQ=255)
                               ccgcCAGTCCACGTAATAACGTTTGTGCGCCTGCgg      <  1:1175611‑M2/32‑1 (MQ=255)
                                cgcCAGTCCACGTAATAACGTTTGTGCGCCTGCggt     >  1:3803242‑M2/4‑36 (MQ=255)
                                cgcCAGTCCACGTAATAACGTTTGTGCGCCTGCggt     <  1:1984410‑M2/33‑1 (MQ=255)
                                cGCCAGTACAGGTAATAACGTAAGTGCGCCTGCggt     <  1:445198/36‑1 (MQ=19)
                                 gcCAGTCCACGTAATAACGTTTGTGCGCCTGCggtg    <  1:6283706‑M2/34‑1 (MQ=255)
                                 gcCAGTCCACGTAATAACGTTTGTGCGCCTGCggtg    <  1:5781756‑M2/34‑1 (MQ=255)
                                  cCAGTCCACGTAATAACGTTTGTGCGCCTGCggtgg   <  1:7382550‑M2/35‑1 (MQ=255)
                                   cAGTCCACGTAATAACGTTTGTGCGCCTGCggtggt  >  1:4453185/1‑36 (MQ=255)
                                   |                                   
TCATGGCAGCCGTTATAAACAGCATTAAGAACCGCCAGTCCACGTAATAACGTTTGTGCGCCTGCGGTGGT  >  REL606/3995499‑3995569

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG