Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6064,383,4600G→T10.0% 1.1 ‑7.9 0.079619purAadenylosuccinate synthetase
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (12/0):  ref base (31/35):  total (44/35)
Fisher's exact test strand distribution p-value = 3.72e-04
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC  >  REL606/4383426‑4383495
                                  |                                   
cGACATCCTGACTTCTATGGTGGTTTACGTTTCTGa                                    >  1:1446949/1‑36 (MQ=255)
cGACATCCTGACTTCTATGGTGGTTGACGTTTCTGa                                    <  1:5382240/36‑1 (MQ=255)
 gACATCCTGACTTCTATGGTGGTTGATGTTTCTTAc                                   >  1:713798/1‑36 (MQ=37)
 gACATCCTGACTTCTATGGTGGTTGACGTTTCTGAc                                   <  1:6543535/36‑1 (MQ=255)
   cATCCTGTCTTCTATGGTGGTTGACGTTTCTGACCt                                 <  1:3979826/36‑1 (MQ=255)
   cATCCTGACTTCTATGGTGGTTTACGTTTCTTACCt                                 >  1:5785340/1‑36 (MQ=37)
   cATCCTGACTTCTATGGTGGCTTACGTTTCTTACCt                                 >  1:6353980/1‑36 (MQ=25)
    aTCCTGACTTCTATGGTGGTTTACGTTTTTTACCtc                                >  1:1554334/1‑35 (MQ=25)
    aTCCTGACTTCTATGGTGGTTGACGTTTTTGACCTg                                >  1:5267674/1‑36 (MQ=255)
    aTCCTGACTTCTATGGTGGTTGACGTTTCTGACCTg                                >  1:80983/1‑36 (MQ=255)
    aTCCTGACTTCTATGGTGGGTTACGTTTCTGACCTg                                >  1:4882659/1‑36 (MQ=38)
     tCCTGACTTCTATGGTGGTTTACGTTTCTTACCttc                               >  1:1007465/1‑34 (MQ=37)
     tCCTGACTTCTATGGTGGTTGACGTTTTTTACCttc                               >  1:3762194/1‑34 (MQ=25)
     tCCTGACTTCTATGGTGGTTGACGTTTCTTACCttc                               >  1:4256241/1‑34 (MQ=37)
      ccTGACTTCTATGGTGGTTTACGTTTCTTACCTGCt                              >  1:3697138/1‑36 (MQ=37)
      ccTGACTTCTATGGTGGTTGACGTTTCTGACCTGCt                              <  1:3265496/36‑1 (MQ=255)
       cTGACTTCTATGGTGGTTTACGTTTCTTACCTTCTc                             >  1:752731/1‑36 (MQ=25)
       cTGACTTCTATGGTGGTTGACGTTTCTGCCCTGCTc                             <  1:6708750/36‑1 (MQ=255)
       cTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTc                             <  1:4863276/36‑1 (MQ=255)
       cTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTc                             <  1:3046722/36‑1 (MQ=255)
        tGACTTCTATGGTGGTTTACGTTTATTACCTGCTCg                            >  1:5946745/1‑36 (MQ=25)
         gACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGa                           <  1:2465090/36‑1 (MQ=255)
          aCTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAc                          <  1:7398941/36‑1 (MQ=255)
           cTTCTATGGTGGTTGACGTTTCTTACCTTCTCGAcc                         >  1:5637032/1‑36 (MQ=25)
           cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc                         <  1:4305448/36‑1 (MQ=255)
           cTTCTATGGTGGTTGACGTTTCTGACCTGCTCGAcc                         <  1:6009870/36‑1 (MQ=255)
             tCTATGGTGGTTTACGTTTCTTACCTGCTCGACCAg                       >  1:2259881/1‑36 (MQ=21)
             tCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAg                       <  1:7501287/36‑1 (MQ=255)
              cTATGGTGGTTGACGTTTCTGACCTGCTCGACCAgg                      <  1:5879197/36‑1 (MQ=255)
                aTGGTGGTTGACGTTTCTGACCTTCTCGACCAGgcg                    >  1:5018789/1‑36 (MQ=255)
                 tggtggTTGACGTTTCTGACCTGCTCGACCAGgcgc                   <  1:6956261/36‑1 (MQ=255)
                  ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg                  >  1:1497788/1‑36 (MQ=255)
                  ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg                  >  1:5987269/1‑36 (MQ=255)
                  ggtggtTGACGTTTCTGACCTGCTCGACCAGGcgcg                  >  1:4708208/1‑36 (MQ=255)
                  ggtggtTGACGTTTCTGAACTGCTCGACCAGGcgcg                  >  1:1944749/1‑36 (MQ=255)
                  ggtggtTGACGTTGCTGACCTGCTCGACCAGGcgcg                  >  1:3206581/1‑36 (MQ=255)
                   gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt                 >  1:6863574/1‑36 (MQ=255)
                   gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt                 >  1:1707973/1‑36 (MQ=255)
                   gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt                 <  1:2563542/36‑1 (MQ=255)
                   gtggtTGACGTTTCTGACCTGCTCGACCAGGCGCGt                 >  1:445089/1‑36 (MQ=255)
                    tggtTGACGTTTCTGACCTGCTCTACCAGGCGCGTc                <  1:7024032/36‑1 (MQ=255)
                     ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa               <  1:3033606/36‑1 (MQ=255)
                     ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa               <  1:1880501/36‑1 (MQ=255)
                     ggtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCa               <  1:6962235/36‑1 (MQ=255)
                      gtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAg              <  1:7050402/36‑1 (MQ=255)
                      gtTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAg              <  1:1740893/36‑1 (MQ=255)
                       ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc             >  1:6810931/1‑36 (MQ=255)
                       ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc             <  1:359806/36‑1 (MQ=255)
                       ttGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGc             >  1:6500411/1‑36 (MQ=255)
                        tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg            <  1:6898638/36‑1 (MQ=255)
                        tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg            >  1:7208562/1‑36 (MQ=255)
                        tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg            <  1:4416779/36‑1 (MQ=255)
                        tGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCg            <  1:2383281/36‑1 (MQ=255)
                        tGAAGTTTCTCACCTGCTCGACCAGGCGCGACAGCg            >  1:6826508/1‑36 (MQ=25)
                         gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt           >  1:5422610/1‑36 (MQ=255)
                         gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt           <  1:7144790/36‑1 (MQ=255)
                         gACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGt           <  1:282046/36‑1 (MQ=255)
                         gACGTTTCTGACCTGATCGACCAGGCGCGTCAGCGt           >  1:2340999/1‑36 (MQ=255)
                          aCGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTg          >  1:1121443/1‑36 (MQ=255)
                          aCGTTTCTGACCTGCTCGACAAGGCGCGTCAGCgcg          >  1:5328586/1‑34 (MQ=25)
                          aCGTTTCTGACCTCCTCGACCAGGCGCGTCAGCGTg          >  1:6605387/1‑36 (MQ=255)
                           cGTTTCTGCCCTGCTAGACCAGGCGCGTCAGCGTgg         <  1:4828980/36‑1 (MQ=37)
                           cGTTTCTGCCCTACACGCCCAGGCGCGTCAGCGTgg         <  1:5720403/36‑1 (MQ=16)
                           cGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTgg         >  1:7353279/1‑36 (MQ=255)
                            gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc        <  1:1944288/36‑1 (MQ=255)
                            gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc        >  1:5054074/1‑36 (MQ=255)
                            gTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGc        <  1:3364753/36‑1 (MQ=255)
                             tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg       >  1:6332734/1‑36 (MQ=255)
                             tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg       >  1:6721962/1‑36 (MQ=255)
                             tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg       <  1:5156074/36‑1 (MQ=255)
                             tttCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCg       >  1:3449229/1‑36 (MQ=255)
                               tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt     >  1:4736933/1‑36 (MQ=255)
                               tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt     >  1:810902/1‑36 (MQ=255)
                               tCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAt     >  1:2182809/1‑36 (MQ=255)
                                cggACCTGCTCGACCAGGCGCGTCAGCGTGGCGAtt    <  1:83917/34‑1 (MQ=255)
                                cTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAtt    >  1:6967939/1‑36 (MQ=255)
                                 tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt   <  1:4597053/36‑1 (MQ=255)
                                 tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt   <  1:3331006/36‑1 (MQ=255)
                                 tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt   <  1:2280404/36‑1 (MQ=255)
                                 tGACCTGCTCGACCAGGCGCGTCAGCGTGGCGAttt   >  1:49797/1‑36 (MQ=255)
                                  gACCTGCTCGACCAGGCGCGTCAGCGTGGCGGTTTc  >  1:2949701/1‑36 (MQ=255)
                                  gACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTc  <  1:360328/36‑1 (MQ=255)
                                  gACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTc  <  1:2909334/36‑1 (MQ=255)
                                  |                                   
CGACATCCTGACTTCTATGGTGGTTGACGTTTCTGACCTGCTCGACCAGGCGCGTCAGCGTGGCGATTTC  >  REL606/4383426‑4383495

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG