Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,795,647 | T→C | 13.7% | D40G (GAT→GGT) | celF ← | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,795,647 | 0 | T→C | 13.7% | 2.1 ‑4.1 ‑0.0 | 36 | 119 | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
Reads supporting (aligned to +/- strand): new base (0/5): ref base (19/12): total (19/17) | ||||||||||
Fisher's exact test strand distribution p-value = 1.64e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.23e-01 |
AATAATATCCAGTTTCGCTTTACCACCTTCGACATCCACCAGCCATAATTCGCTGACCGGCAATTCGTGA > REL606/1795613‑1795682
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aataatATCCAGTTTCGCTTTACCACCTTCGACATc > 1:5218458/1‑36 (MQ=255)
aataatATCCAGTTTCGCTTTACCACCTTCGACATc < 1:4655583/36‑1 (MQ=255)
ataataTCCAGTTTCGCTTTACCACCTTCGACATcc < 1:839608/36‑1 (MQ=255)
ataataTCCAGTTTCGCTTTACCACCTTCGACATcc > 1:2976653/1‑36 (MQ=255)
taataTCCAGTTTCGCTTTACCACCTTCGACATcca > 1:1470563/1‑36 (MQ=255)
taataTCCAGTTTCGCTTTACCACCTTCGACATcca > 1:5248772/1‑36 (MQ=255)
atatCCAGTTTCGCTTTACCACCTTCGACATccacc > 1:4238444/1‑36 (MQ=255)
tatCCAGTTTCTCTTTACCCCCTTCGACATccacca < 1:5353252/36‑1 (MQ=37)
tCCAGTTTCGCTTTACCACCTTCGACATCCACCAGc < 1:2249482/36‑1 (MQ=255)
ccAGTTTCGCTTTACCACCTTCGACATCCACCAGcc < 1:852836/36‑1 (MQ=255)
ccAGTTTCGCTTTACCACCTTCGACATCCACCAGcc < 1:733799/36‑1 (MQ=255)
ccAGTTTCGCTTTACCACCTTCGACATCCACCAGcc < 1:3863594/36‑1 (MQ=255)
ccAGTGCCGCTTTACCCCCTTCGACATCCACCAGcc < 1:54067/36‑1 (MQ=25)
aGTTCCCCTTTACCACCTTCGACATCCACCAGCCAt < 1:677688/36‑1 (MQ=37)
gTTTCGCTTTACCACCTTCGACATCCACCAGCCATa > 1:1311573/1‑36 (MQ=255)
tCGCTTTACCACCTTCGACATCCACCAGCCATAAtt > 1:1001242/1‑36 (MQ=255)
tCGCTTTACCACCTTCGACATCCACCAGCCATAAtt > 1:5411477/1‑36 (MQ=255)
cgttttACCTCCTCCGCGACCCCCCAGCCATAATTc < 1:5344418/33‑1 (MQ=2)
cGCTTTACCACCTCCGACATCCCCCAGCCATAATTc < 1:5271415/36‑1 (MQ=37)
gCTTTACCACCTTCGACATCCACCAGCCATAATTCg > 1:2902454/1‑36 (MQ=255)
ccTTTCCCCCCTTCAACATCCACCAGCCATAATTCg < 1:4205300/35‑1 (MQ=21)
cTTTACCACCTTCGACATCCACCAGCCATAATTCGc > 1:4271299/1‑36 (MQ=255)
cTTTACCACCTTCGAAATCCACCAGCCATAATTCGc > 1:45739/1‑36 (MQ=255)
tttACCCCCTCCAACATCCCCCAGCCATAATTCGCt < 1:4541114/36‑1 (MQ=19)
tttACCACCTTCGACATCCACCAGCCATAATTCGCt > 1:4076744/1‑36 (MQ=255)
tttACCACCTTCGACATCCACCAGCCATAATTCGCt > 1:2223031/1‑36 (MQ=255)
ttaaccaccTTCCACACACACCACCCATAATTCGCt < 1:4207482/33‑1 (MQ=16)
tACCACCTTCGACATCCACCAGCCATAATTCGCTGa > 1:3759325/1‑36 (MQ=255)
cccaccTACCACACCCCCCAGCCATAATTCGCTGAc < 1:4157952/35‑1 (MQ=19)
accaccTTCGACATCCACCAGCCATAATTCGCTGAc > 1:1189847/1‑36 (MQ=255)
ctccGACACCCCCCAGCCATAATTCGCTGACCGGCa < 1:5133257/33‑1 (MQ=25)
ccaCACCCCCCAGCCATAATTCGCTGACCGGCAAtt < 1:4674265/34‑1 (MQ=37)
cGACATCCACCAGCCATAATTCGCTGACCGGCAAtt > 1:306606/1‑36 (MQ=255)
aCATCCACCAGCCATAATTCGCTGACCGGCAATTCg > 1:1923730/1‑36 (MQ=255)
aTCCACCAGCCATAATTCGCTGACCGGCAATTCGTg > 1:1528296/1‑36 (MQ=255)
aTCCACCAGACATCATTCGCTGACCGGCAAAACGTg > 1:3823421/1‑36 (MQ=19)
tCCCCCAGCCATAATTCGCTGACCGGCAATTCGTGa < 1:5311191/36‑1 (MQ=255)
tCCACCAGCCATAATTCGCTGACCGGCAATTCGTGa > 1:3942919/1‑36 (MQ=255)
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AATAATATCCAGTTTCGCTTTACCACCTTCGACATCCACCAGCCATAATTCGCTGACCGGCAATTCGTGA > REL606/1795613‑1795682
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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