New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 103607323 (0.430)9 (0.170) 7/62 NT 28.1% intergenic (+45/+31) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2540943 23 (0.380)coding (38/1290 nt) uraA uracil transporter

AATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTC  >  REL606/2540908‑2540978
                                   |                                   
aaTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTg                                     <  1:6427185/36‑1 (MQ=255)
aaTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTg                                     <  1:5095357/36‑1 (MQ=255)
 aTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGg                                    <  1:2916617‑M2/36‑2 (MQ=255)
 aTGTTGAAAACTAGGCGGGATTGTCTGTAAAAGTgg                                    <  1:3852065/36‑1 (MQ=255)
  tGTTGCAACCTAAGCGGGATTGTCTGTAAAAGTGgc                                   >  1:4151910‑M2/1‑34 (MQ=255)
   gTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcg                                  <  1:7044676‑M2/36‑4 (MQ=255)
   gTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcg                                  <  1:3173791‑M2/36‑4 (MQ=255)
    ttGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcgg                                 >  1:7323040‑M2/1‑32 (MQ=255)
     tGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcggg                                <  1:405990‑M2/36‑6 (MQ=255)
     tGCAAACTAAGCGGGATTGGCTGTAAAAGTGGCGGt                                <  1:891275/36‑1 (MQ=255)
      gCAAACTAAGCGGGATTGTCTGTAAAAGTGgcgggg                               <  1:1845246‑M2/36‑7 (MQ=255)
      gCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTc                               <  1:5152479/36‑1 (MQ=255)
       cAAACTAAGCGGGATTGTCTGTAAAAGTGgcgggct                              <  1:4689958‑M2/36‑8 (MQ=255)
       cAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCt                              <  1:1048437/36‑1 (MQ=255)
        aaaCTAAGCGGGATTGTCTGTAAAAGTGgcggggtt                             <  1:4628786‑M2/36‑9 (MQ=255)
        aaaCTAAGCGGGATTGTCTGTAAAAGTGGCGGTCtt                             <  1:4871917/36‑1 (MQ=255)
         aaCTAAGCGGGATTGTCTGTAAAAGTGgcggggttt                            <  1:13431‑M2/36‑10 (MQ=255)
         aaCTAAGCGGGATTGTCTGTAAAAGTGgcgggggtt                            <  1:6048664‑M2/36‑10 (MQ=255)
          aCTAAGCGGGATTGTCTGTAAAAGTGgcgggggttt                           <  1:5305051‑M2/36‑11 (MQ=255)
          aCTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTtc                           <  1:7121154/36‑1 (MQ=255)
             aaGCGGGATTGTCTGTAAAAGTGgcggggttttttt                        <  1:370764‑M2/36‑14 (MQ=255)
             aaGCGGGATTGTCTGTAAAAGTGGCGGTCTTtcact                        <  1:6545665/36‑1 (MQ=255)
              aGCGGGATTGTCTGTAAAAGTGgcggggtttttttt                       <  1:5787406‑M2/36‑15 (MQ=255)
              aGCGGGATTGTCTGTAAAAGTGGCGGTCTTtcactc                       <  1:7660102/36‑1 (MQ=255)
                 gggATTGTCTGTAAAAGTGGCGGTCTTTCACTCAcc                    <  1:1221911/36‑1 (MQ=255)
                   gATTGTCTGTAAAAGTGGCGGTCTTTCACTCAcccc                  <  1:4298332/36‑1 (MQ=255)
                   aaTTGTCTGTAAAAGTGGCGGTCTTTCACTCAcccc                  <  1:2863477/35‑1 (MQ=255)
                     ttGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGa                <  1:2290975/36‑1 (MQ=255)
                         cTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGc            <  1:6887854/36‑1 (MQ=255)
                          tGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCa           <  1:1400510/36‑1 (MQ=255)
                          tGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCa           <  1:7613356/36‑1 (MQ=255)
                             aaaaGTGGCGGTCTTTCACTCACCCCGATAGCACgg        <  1:4337652/36‑1 (MQ=255)
                              aaggTGACGGTCTTTCACTCACCCCGATAGCACGgc       <  1:1167766/33‑1 (MQ=37)
                              aaaGTGGCGGTCTTTCACTCACCCCGATAGCACGgc       <  1:1842228/36‑1 (MQ=255)
                              aaaGTGGCGGTCTTTCACTCACCCCGATAGCACGgc       <  1:6959515/36‑1 (MQ=255)
                                aggggCGGTCTTGCACGCACCCCGATAGCACGgcgc     <  1:2638598/33‑1 (MQ=25)
                                aGTGGCCGTCTTTCACTCAGCCCGATAGCACGgcgc     <  1:379330/36‑1 (MQ=25)
                                 gTGGCGGTCTTTCACTCACCCCGATAGCACGGcgcg    <  1:4025220/36‑1 (MQ=255)
                                  tGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGt   <  1:4287522/36‑1 (MQ=255)
                                   ggCGGTCTTTCACTCGCCCCGATAGCACGGCGCGTc  <  1:6896831/36‑1 (MQ=255)
                                   |                                   
AATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTC  >  REL606/2540908‑2540978

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG