New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)60 (1.030) 36/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588
                                                                        
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    >  1:4092073/1‑36 (MQ=38)
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    <  1:2630816/36‑1 (MQ=38)
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    <  1:7251152/36‑1 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   <  1:8463903/36‑1 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   >  1:2285436/1‑36 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   >  1:6158473/1‑36 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   <  1:563147/36‑1 (MQ=38)
   GTGCGCAACAACCGTCTTCCGGAGACTGTCATACTG                                   <  1:1215124/36‑1 (MQ=38)
    TGCGCAACAACCGTCTTCCGGAGACTGTCATACTGT                                  >  1:1973492/1‑36 (MQ=38)
    TGCGCAACAACCGTCTTCCGGAGACTGTCATACTGT                                  <  1:4072856/36‑1 (MQ=38)
     GCGCAACAACCGTCTTCCGGAGACTGTCATACTcgt                                 <  1:4940494/36‑4 (MQ=255)
     GCGCAACAACCGTCTTCCGGAGACTGTCATACGGTA                                 >  1:8438010/1‑36 (MQ=255)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                >  1:2068081/1‑36 (MQ=38)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                <  1:4400301/36‑1 (MQ=38)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                <  1:3221963/36‑1 (MQ=38)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                <  1:3912038/36‑1 (MQ=38)
        CAACAACCGTCTTCCGGAGACTGTCATACTGTACTG                              >  1:3171820/1‑36 (MQ=38)
        CAACAACCGTCTTCCGGAGACTGTCATACTGTACTG                              <  1:3436754/36‑1 (MQ=38)
         AACAACCGTCTTCCGGAGACTGTCATACTGTACTGC                             <  1:6507977/36‑1 (MQ=38)
          ACAACCGTCTTCCGGAGACTGTCATACTGTACTGCA                            >  1:501872/1‑36 (MQ=38)
          ACAACCGTCTTCCGGAGACTGTCATACTGTACTGCA                            >  1:3625632/1‑36 (MQ=38)
          ACAACCGTCTTCCGGAGACTGTCATACTGTACTGCA                            >  1:1411534/1‑36 (MQ=38)
           CAACCGTCTTCCGGAGACTGTCATACTGTACTGCAC                           >  1:7373221/1‑36 (MQ=38)
           CAACCGTCTTCCGGAGACTGTCATACTGTACTGCAC                           >  1:6433966/1‑36 (MQ=38)
             ACCGTCTTCCGGAGACTGTCATACTGTACTGCACCC                         >  1:2258054/1‑36 (MQ=38)
             ACCGTCTTCCGGAGACTGTCATACTGTACTGCACCC                         >  1:429753/1‑36 (MQ=38)
             ACCGTCTTCCGGAGACTGTAATACTGTACTGCACCC                         <  1:1526989/36‑1 (MQ=255)
              CCGTCTTCCGGAGACTGTCATACTGTACTGCACCCA                        >  1:7470950/1‑36 (MQ=38)
              CCGTCTTCCGGAGACTGTCATACTGTACTGCACCCA                        >  1:2167232/1‑36 (MQ=38)
               CGTCTTCCGGAGACTGTCATACTGTACTGCACCCAT                       <  1:579000/36‑1 (MQ=38)
                GTCTTCCGGAGACTGTCATACTGTACTGCACCCATT                      >  1:7753436/1‑36 (MQ=38)
                 TCTTCCGGAGACTGTCATACTGTACTGCACCCATTT                     <  1:6385251/36‑1 (MQ=38)
                 TCTTCCGGAGACTGTCATACTGTACTGCACCCATTT                     <  1:1581075/36‑1 (MQ=38)
                  CTTCCGGAGACTGTCATACTGTACTTCACCCATTTT                    >  1:8286212/1‑36 (MQ=255)
                  CTTCCGGAGACTGTCATACTGTACTGCACCCATTTT                    <  1:6907313/36‑1 (MQ=38)
                  CTTCCGGAGACTGTCATACTGTACTGCACCCATTTT                    <  1:8407549/36‑1 (MQ=38)
                   TTCGGGAGACTGTCATACTGTACTGCACCCATTTTG                   <  1:2164885/36‑1 (MQ=255)
                   TTCCGGAGACTGTCATACTGTACTGCACCCATTTTG                   >  1:890350/1‑36 (MQ=38)
                    TCCGGAGACTGTCATACTGTACTGCACCCATTTTGT                  >  1:8039210/1‑36 (MQ=38)
                    TCCGGAGACTGTCATACTGTACTGCACCCATTTTGT                  <  1:7913367/36‑1 (MQ=38)
                    TCCGGAGACTGTCATACTGTACTGCACCCATTTTGT                  >  1:386620/1‑36 (MQ=38)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:5386384/1‑36 (MQ=38)
                         AGACTGTCATACTGTACTGCACCCATTTTGTTGGAC             <  1:3846541/36‑1 (MQ=38)
                          GACTGTCATACTGTACTGCACCCATTTTGTTGGACG            <  1:572667/36‑1 (MQ=35)
                          GACTGTCATACTGTACTGCACCCATTTTGTTGGACG            >  1:2706108/1‑36 (MQ=35)
                          GACTGTCATACTGTACTGCACCCATTTTGTTGGACG            >  1:3618417/1‑36 (MQ=35)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:2091491/36‑1 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:421369/36‑1 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:4488874/36‑1 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:497472/36‑1 (MQ=1)
                             TGTCATACTGTACTGCACCCATTTTGTTGGACGATG         <  1:7530457/36‑1 (MQ=1)
                             TGTCATACTGTACTGCACCCATTTTGTTGGACGATG         <  1:4716566/36‑1 (MQ=1)
                              GTCATACTGTACTGCACCCATTTTGTTGGACGATGA        >  1:3996109/1‑36 (MQ=1)
                              GTCATACTGTACTGCACCCATTTTGTTGGACGATGA        >  1:4698511/1‑36 (MQ=1)
                               TCATACTGTACTGCACCCATTTTGTTGGACGATGAA       >  1:881305/1‑36 (MQ=1)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      <  1:5661151/36‑1 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:7656634/1‑36 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:7084421/1‑36 (MQ=1)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:2657714/1‑36 (MQ=1)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:2310664/1‑36 (MQ=1)
                                                                        
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG