Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 523,481 | A→G | 14.1% | T293A (ACC→GCC) | arcC → | predicted carbamate kinase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 523,481 | 0 | A→G | 14.1% | 2.1 ‑1.0 0.0 | 36 | 877 | arcC | predicted carbamate kinase |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (18/12): total (23/13) | ||||||||||
Fisher's exact test strand distribution p-value = 3.85e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGCA > REL606/523450‑523516
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aaTTGAAGAGACGCTGGCGGGCGGAACGGGGACGTg > 1:5727718/1‑36 (MQ=21)
tGAAGAGACGCTGGCGGGCGGAGCGGGGGGCTGtgt > 1:2458192/1‑34 (MQ=18)
aaGAGACGCTGGAGGGCCAAGGGGGGGGGTGTAttt > 1:5058497/1‑36 (MQ=9)
gagaCGCTGGCGGGGGGAGCGGGGGCCGGTGttttg > 1:1753433/1‑34 (MQ=12)
gagaCGCTGGCGGGGGAAGCGGGGGCCGGGATTTCg > 1:307483/1‑36 (MQ=16)
gaCGCTGGGGGGCGAAGCGGGGACCTGTATTTCGCt < 1:502616/36‑1 (MQ=255)
aCGCTGGCGGGCGAAGCGGGGGCCTGTATTTCGCTg > 1:2912044/1‑36 (MQ=255)
cGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGt < 1:3689080/36‑1 (MQ=255)
tGGCGGGCGAAGCGGGGAACCGTATTTAGCTGTTGt > 1:420421/1‑36 (MQ=16)
gcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtga < 1:5882695/36‑1 (MQ=255)
gcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtga > 1:4410636/1‑36 (MQ=255)
gcgggcgAAGCGGGGACCTGTATTTCGCTGTAGtga < 1:4076086/36‑1 (MQ=255)
gggcgAAGCGGGGACCTGTATTTCGCTGTAGtgatg > 1:4848637/1‑36 (MQ=255)
gggcgAAGCGGGGACCTGTATTTCGCTGTAGtgatg > 1:3617569/1‑36 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga < 1:2867347/36‑1 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga > 1:5202782/1‑36 (MQ=255)
cgAAGCGGGGACCTGTATTTCGCTGTAGTGATgaga < 1:475555/36‑1 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:5680669/1‑36 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:785965/1‑36 (MQ=255)
gAAGCGGGGACCTGTATTTCGCTGTAGTGATGagag > 1:3217238/1‑36 (MQ=255)
gAAGCGGGGACCTGTATTTCGATGTAGTGATGagag > 1:1939025/1‑36 (MQ=255)
aaGCGGGGGCCTGTATTTCGCTGTAGTGATGAGAGc < 1:5777379/36‑1 (MQ=255)
aaGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGc < 1:499248/36‑1 (MQ=255)
aaGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGc < 1:5136468/36‑1 (MQ=255)
aaGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGc < 1:5235158/36‑1 (MQ=255)
aGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCa < 1:1535339/36‑1 (MQ=255)
gCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCAt < 1:3169493/36‑1 (MQ=255)
cGGGGACCTGTATTTTGCTGTAGTGGTGAGAGAATc > 1:2877879/1‑36 (MQ=25)
ggggACCTGTATTTCGCTGTAGTGATGAGAGCATcc > 1:1130125/1‑36 (MQ=255)
gggACCTGTATTTCGCTGTAGTGATTAGAGCATcag > 1:651913/1‑34 (MQ=38)
gggACCTGTATTTCGCTGTAGTGATGAGAGCATCCg < 1:1474342/36‑1 (MQ=255)
ggACCTGTATTTCGCTGTAGTGATGAGAGCATCCgg > 1:5476971/1‑36 (MQ=255)
ggACCTGTATTTCGCTGTAGTGATGAGAGCATCCgg > 1:2183661/1‑36 (MQ=255)
ggACCTGTATTTCGCTGTAGTGATGAGAGCATCCgg > 1:3231709/1‑36 (MQ=255)
gACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGc > 1:4576957/1‑36 (MQ=255)
gACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGc > 1:3809808/1‑36 (MQ=255)
aCCTGTATTTCGCTGTAGTGATGAGAGCATCCGGCa > 1:5337692/1‑36 (MQ=255)
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AATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTATTTCGCTGTAGTGATGAGAGCATCCGGCA > REL606/523450‑523516
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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