New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2353390 =29 (0.480)5 (0.080) 4/70 NT 16.4% coding (1554/1833 nt) yfbS predicted transporter
?REL606 3424865 = 22 (0.370)intergenic (+83/‑43) nirD/nirC nitrite reductase small subunit/nitrite transporter

ACCGCCGTCGCGGTATTAGAGATAAATAGCCCAATAACCGCCGACAAGACAAACAAACACCCCAGCATCAT  >  REL606/2353355‑2353425
                                   |                                   
acCGCCGTCGCGGTATTAGAGATAAATAGCCCAATa                                     >  1:2546248/1‑36 (MQ=255)
acCGCCGTCGCGGGATTAGAGATAAATAGCCCAATa                                     >  1:6931265/1‑36 (MQ=255)
 ccgccgTCGCGGTATTAGAGATAAATAGCCCAATaa                                    <  1:419037/36‑1 (MQ=255)
  cgccgTCGCGGTATTAGAGATAAATAGCCCAATAAc                                   <  1:6482436/36‑1 (MQ=255)
   gccgTCGCGGTATTAGAGATAAATAGCCCAATAAcc                                  >  1:4776142/1‑36 (MQ=255)
   accgTCGCGGTATTAGAGATAAATAGCCCAATAAcc                                  <  1:1783287/35‑1 (MQ=255)
      gTCGCGGCATTAGAGATAAATAGCCCAATAAccgcc                               >  1:4239897/1‑36 (MQ=255)
        cgcgGTATTAGAGATAAATAGCCCAATAACCGCCga                             >  1:6266063/1‑36 (MQ=255)
          cgGTATTAGAGATAAATAGCCCAATAACCGCCgaca                           >  1:6991063/1‑36 (MQ=255)
            gTATTAGAGATAAATAGCCCAATAACCGCCgacaag                         >  1:3814968/1‑36 (MQ=255)
            gTATTAGAGATAAATAGCCCAATAACCGCCgacaag                         >  1:7352896/1‑36 (MQ=255)
            gTATTAGAGATAAATAGCCCAATAACAGCCgacaag                         >  1:676944/1‑36 (MQ=255)
                 agagATAAATAGCCCAATAACCGCCGACAAGacaaa                    >  1:2472389/1‑36 (MQ=255)
                 agagATAAATAGCCCAATAACCGCCGACAAGacaaa                    >  1:2235706/1‑36 (MQ=255)
                 agagATAAATAGCCCAATAACCGCCGACAAGacaaa                    >  1:7499880/1‑36 (MQ=255)
                  gagaTAAATAGCCCAATAACCGCCGACAAGacaaac                   >  1:98325/1‑36 (MQ=255)
                  aaaaaaaaaaacaaaaaAACCGCCGACAAGacaaac                   >  1:6468303‑M1/18‑36 (MQ=255)
                    gaTAAATAGCCCAATAACCGCCGACAAGacaaacaa                 >  1:1080633/1‑36 (MQ=255)
                     aTAAATAGCCCAATAACCGCCGACAAGAcaaacaaa                >  1:7289807/1‑36 (MQ=255)
                     aTAAATAGCCCAATAACCGCCGACAAGAcaaacaaa                >  1:527666/1‑36 (MQ=255)
                      tAAATAGCCCAATAACCGCCGACAAGACaaacaaac               >  1:1558588/1‑36 (MQ=255)
                       aaaTAGCCCAATAACCGCCGACAAGACAaacaaaca              >  1:7171970/1‑36 (MQ=255)
                        aaTAGCCCAATAACCGCCGACAAGAAAAACAAacac             >  1:3795159/1‑36 (MQ=255)
                         aaaaaaaaaaAACCGCCGACAAGACAAACAAACAcc            >  1:5798896‑M1/11‑36 (MQ=255)
                          tAGCCCAATAACCGCCGACAAGACAAACAAACAccc           >  1:3748235/1‑36 (MQ=255)
                            gCCCAATAACCGCCGACAAGACAAACAAACACCCCa         >  1:6635878/1‑36 (MQ=255)
                            gCCCAATAACCGCCGACAAGACAAACAAACACCCCa         >  1:2609130/1‑36 (MQ=255)
                            gCCCAATAACCGCCGACAAGACAAACAAACACCCCa         >  1:1152593/1‑36 (MQ=255)
                            acaaaaaAACCGCCGACAAGACAAACAAACACCCCa         >  1:703785‑M1/8‑36 (MQ=255)
                              caaaaAACCGCCGACAAGACAAACAAACACCCCAGc       >  1:6301956‑M1/6‑36 (MQ=255)
                               cAATAACCGCCGACAAGACAAACAAACACCCCAGca      >  1:1030210/1‑36 (MQ=255)
                                aaaAACCGCCGACAAGACAAACAAACACCCCAGcat     >  1:6978566‑M1/4‑36 (MQ=255)
                                 aTAACCGCCGACAAGACAAACAAACACCCCAGcatc    >  1:6933537/1‑36 (MQ=255)
                                  tAACCGCCGACAAGACAAACAAACACCCCAGcatca   >  1:1094087/1‑36 (MQ=255)
                                   aaCCGCCGACAAGACAAACAAACACCCCAGtatcat  <  1:750364/36‑1 (MQ=255)
                                   aaCCGCCGACAAGACAAACAAACACCCCAGcatcat  >  1:3541103/1‑36 (MQ=255)
                                   |                                   
ACCGCCGTCGCGGTATTAGAGATAAATAGCCCAATAACCGCCGACAAGACAAACAAACACCCCAGCATCAT  >  REL606/2353355‑2353425

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG