New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1097109 =34 (0.740)5 (0.110) 4/52 NT 12.0% intergenic (+12/‑522) putP/ycdN proline:sodium symporter/putative membrane protein
?REL606 4079105 = 39 (0.630)coding (903/1035 nt) rhaT L‑rhamnose:proton symporter

CGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCG  >  REL606/1097075‑1097144
                                  |                                   
cgTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTg                                    <  1:2238602/36‑1 (MQ=255)
cagttggatgctgcatatgagtttctatgtattgtt                                    <  1:7882973‑M1/2‑2 (MQ=255)
cagttggatgctgcatatgagtttctatgtattgtg                                    <  1:4557658‑M1/2‑1 (MQ=255)
 gTCACGGTTGCAGGCAAGCTAAGCGACTTAGCCTgc                                   >  1:186892/1‑36 (MQ=38)
 gTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTgc                                   >  1:7102131/1‑36 (MQ=255)
 gTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTgc                                   >  1:2552912/1‑36 (MQ=255)
 agttggatgctgcatatgagtttctatgtattgTgc                                   <  1:2194534‑M1/3‑1 (MQ=255)
 agttggatgctgcatatgagtttctatgtattgTgc                                   <  1:2446797‑M1/3‑1 (MQ=255)
 agttggatgctgcatatgagtttctatgtattgTgc                                   >  1:8006092‑M1/34‑36 (MQ=255)
  gttggatgctgcatatgagtttctatgtattgTgcg                                  >  1:2339805‑M1/33‑36 (MQ=255)
  gttggatgctgcatatgagtttctatgtattgTgcg                                  >  1:3354041‑M1/33‑36 (MQ=255)
   ttggatgctgcatatgagtttctatgtattgTgcgg                                 >  1:1900368‑M1/32‑36 (MQ=255)
   cACGGTTGCAGGAAAGCTAAGGGGCTTAGCCTgcgg                                 >  1:1811723/1‑36 (MQ=255)
   cACGGTTGCAGGAAAGCTAAGGGACTTAGCCTgcgg                                 >  1:4017951/1‑36 (MQ=255)
    tggatgctgcatatgagtttctatgtattgTgcggc                                >  1:3793678‑M1/31‑36 (MQ=255)
    tggatgctgcatatgagtttctatgtattgTgcggc                                >  1:370605‑M1/31‑36 (MQ=255)
    tggatgctgcatatgagtttctatgtattgTgcggc                                >  1:7277982‑M1/31‑36 (MQ=255)
    aCGGTTGCAGGAAAGCTAAGGGACTTAGCCTgcggc                                >  1:6547891/1‑36 (MQ=255)
    aCGGTTGCAGGAAAGCTAAGGGACTTAGCCTgcggc                                >  1:5362604/1‑36 (MQ=255)
     cGGTTGCAGGAAAGCTAAGGGACTTAGCCTgcggcg                               <  1:5078264/36‑1 (MQ=255)
      ggTTGCAGGAAAGCTAAGGGACTTAGCCTGcggcgg                              >  1:4958863/1‑36 (MQ=255)
      gatgctgcatatgagtttctatgtattgTGcggcgg                              >  1:6969067‑M1/29‑36 (MQ=255)
       atgctgcatatgagtttctatgtattgTGCGGCGGt                             <  1:5532368‑M1/9‑1 (MQ=255)
        ttGCAGGAAAGCTAAGGGACTTAGCCTGcggcgggt                            >  1:4358327/1‑34 (MQ=255)
        ttGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGtt                            <  1:5949712/36‑1 (MQ=255)
        tgctgcatatgagtttctatgtattgTGCGGCGGtt                            <  1:6486042‑M1/10‑1 (MQ=255)
         tGCAGGAAAGCTAAGGGACTTAGCCTGcggcggggt                           >  1:7132836/1‑33 (MQ=255)
         gctgcatatgagtttctatgtattgTGCGGCGGttt                           <  1:6755612‑M1/11‑1 (MQ=255)
          gCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGtttt                          <  1:5955587/36‑1 (MQ=255)
           cAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTtttg                         <  1:3855104/36‑1 (MQ=255)
            gcatatgagtttctatgtattgTGCGGCGGTtttgt                        <  1:3701377‑M1/14‑1 (MQ=255)
             ggAAAGCTAAGGGACTTAGCCTGCGGCGGTtttgtt                       <  1:2777381/36‑1 (MQ=255)
             ggAAAGCTAAGGGACTTAGCCTGCGGCGGTtttgtt                       <  1:1658673/36‑1 (MQ=255)
              atatgagtttctatgtattgTGCGGCGGtattgttg                      <  1:5706687‑M1/16‑2 (MQ=255)
               tatgagtttctatgtattgTGCGGCGGTtttgtttg                     <  1:5423510‑M1/17‑1 (MQ=255)
               aaaGCTAAGGGACTTAGCCTGCGGCGGTtttgtttg                     <  1:7398616/36‑1 (MQ=255)
               aaaGCTAAGGGACTTAGCCTGCGGCGGTtttgtttg                     <  1:3260719/36‑1 (MQ=255)
                 aGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGc                   <  1:3793785/36‑1 (MQ=255)
                 aGCTAAGGGACTTAGCCTGCGGCGGGgttgttttgt                   >  1:4159773/1‑33 (MQ=25)
                    tAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTc                <  1:362261/36‑1 (MQ=255)
                    tAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTc                <  1:3536992/36‑1 (MQ=255)
                     aaGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTca               <  1:7703783/36‑1 (MQ=255)
                      aGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTcag              <  1:8297761/36‑1 (MQ=255)
                      aGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTcag              <  1:2584369/36‑1 (MQ=255)
                       gggACTTAGCCTGCGGCGGTTTTGTTTGGCTTcagc             <  1:5212746/36‑1 (MQ=255)
                         gACTTAGCCTGCGGCGGTTTTGTTTGGCTTcagcag           <  1:6795339/36‑1 (MQ=255)
                         gACTTAGCCTGCGGCGGTTTTGTTTGGCTTcagcag           <  1:7796074/36‑1 (MQ=255)
                          aCTTAGCCTGCGGCGGTTTTGTTTGGCTTCagcagc          <  1:4607602/36‑1 (MQ=255)
                          aCTTAGCCTGCGGCGGTTTTGTTTGGCTTCagcagc          <  1:3685177/36‑1 (MQ=255)
                           cTTAGCCTGCGGCGTTTTTGTTTGGCTTCAGCAGCg         >  1:7716420/1‑36 (MQ=255)
                           cTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCg         <  1:6887843/36‑1 (MQ=255)
                           cTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCg         <  1:8228602/36‑1 (MQ=255)
                                  TGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTgcg  >  1:321361‑M1/1‑36 (MQ=255)
                                  |                                   
CGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCG  >  REL606/1097075‑1097144

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG