New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 640118 =43 (0.790)9 (0.160) 6/62 NT 23.1% intergenic (+36/+19) cspE/ccrB cold shock protein E/camphor resistance protein CrcB
?REL606 = 1245375 17 (0.280)coding (66/441 nt) ycgY hypothetical protein

AGCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTATTGAACA  >  REL606/1245340‑1245401
                                   |                          
aGCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAg                            >  1:6735078/1‑36 (MQ=255)
 gCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGg                           >  1:740056‑M2/1‑35 (MQ=255)
  ccAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGgc                          >  1:8437233‑M2/1‑34 (MQ=255)
   cAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGgcg                         >  1:8044721‑M2/1‑33 (MQ=255)
    aGTCAGGCGTTAAAAATGGGGCGGATAGTGAGgcgg                        <  1:5970081‑M2/36‑5 (MQ=255)
    aGTCAGGCGTTAAAAATGGGGCGGATAGTGAGgcgg                        <  1:2447530‑M2/36‑5 (MQ=255)
     gtaaGGCGTTAAAAATGGGGCGGATAGTGAGTCGGt                       <  1:6299157/33‑1 (MQ=37)
        aGGCGTTAAAAATGGGGCGGATAGTGAGgcgggttt                    <  1:2524273‑M2/36‑9 (MQ=255)
        aGGCGTTAAAAATGGGGCGGATAGTGAGGCGGtttt                    <  1:7651747/36‑1 (MQ=255)
          gCGTTAAAAATGGGGCGGATAGTGAGGCGGTTTTgg                  <  1:7140339/36‑1 (MQ=255)
            gTTAAAAATGGGGCGGATAGTGAGgcgggttttttt                <  1:3619495‑M2/36‑13 (MQ=255)
            gTTAAAAATGGGGCGGATAGTGAGgcgggtttttgt                <  1:1513514‑M2/36‑13 (MQ=255)
            gTTAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCt                <  1:6640103/36‑1 (MQ=255)
             ttAAAAATGGGGCGGATAGTGAGgcgggtttttttt               <  1:1960249‑M2/36‑14 (MQ=255)
             ttAAAAATGGGGCGGATAGTGAGgcgggttttgttt               <  1:2069000‑M2/36‑14 (MQ=255)
             ttAAAAATGGGGCGGATAGTGAGgcgggtctttttt               <  1:4520533‑M2/36‑14 (MQ=255)
             ttAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTg               <  1:3696585/36‑1 (MQ=255)
             ttAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTg               <  1:311985/36‑1 (MQ=255)
              tAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTgc              <  1:4022315/36‑1 (MQ=255)
               aaaaaTGGGGCGGATAGTGAGgcgggtttttttttg             <  1:3297907‑M2/36‑16 (MQ=255)
                aaaaTGGGGCGGATAGTGAGgcgggtttttgtttgg            <  1:5876837‑M2/36‑17 (MQ=255)
                 aaaTGGGGCGGATAGTGAGgcgggtttttttgtggt           <  1:5194725‑M2/36‑18 (MQ=255)
                   aTGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTa         <  1:805317/36‑1 (MQ=255)
                   aTGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTa         <  1:961298/36‑1 (MQ=255)
                   aTGGGGCGGATAGGGAGGCGGTTTTGGCTGCGCTTa         <  1:6267800/36‑1 (MQ=255)
                    tGGGGCGTATAGTGAGGCGGTTTTGGCTGCGCTTAt        <  1:1851270/36‑1 (MQ=255)
                    tGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTAt        <  1:3296187/36‑1 (MQ=255)
                    tGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTAt        <  1:7733742/36‑1 (MQ=255)
                      gggCGGATAGTGAGGCGGTTTTGGCTGCGCTTATTg      <  1:3246553/36‑1 (MQ=255)
                      gggCGGATAGTGAGGCGGTTTTGGCTGCGCTTATTg      <  1:3105133/36‑1 (MQ=255)
                       ggCGGATAGTGAGGCGGTTTTGGCTGCGCTTATTGa     <  1:8449842/36‑1 (MQ=255)
                          ggATAGTGAGGCGGTTTTGGCTGCGCTTATTGAACa  <  1:8128994/36‑1 (MQ=255)
                                   |                          
AGCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTATTGAACA  >  REL606/1245340‑1245401

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG