Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,339,158 | A→C | 54.9% | intergenic (+22/‑4) | yhdG → / → fis | tRNA‑dihydrouridine synthase B/DNA‑binding protein Fis |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,339,158 | 0 | A→C | 54.9% | 49.7 ‑1.5 ‑0.0 | 40 | intergenic (+22/‑4) | yhdG/fis | tRNA‑dihydrouridine synthase B/DNA‑binding protein Fis |
Reads supporting (aligned to +/- strand): new base (10/12): ref base (12/6): total (22/18) | ||||||||||
Fisher's exact test strand distribution p-value = 2.16e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.18e-01 |
AAAATTTTGCGTAAACAGAAATAAAGAGCTGACAGAACTATGTTCGAACAACGCGTAAATTCTGACGTACT > REL606/3339123‑3339193
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aaaaTTTTGCGTAAACAGAAATAAAGAGCTGACAGa > 1:2850322/1‑36 (MQ=255)
aTTTTGCGTAAACAGAAATAAAGAGCTGACAGAACt > 1:2781006/1‑36 (MQ=255)
aTTTTGCGTAAACAGAAATAAAGAGCTGACAGAACt > 1:4595771/1‑36 (MQ=255)
ttttGCGTAAACAGAAATAAAGAGCTGACAGCACTa < 1:779238/36‑1 (MQ=255)
ttttGCGTAAACAGAAATAAAGAGCTGACAGCACTa > 1:5373430/1‑36 (MQ=255)
tttGCTTAAACAGAAATAAAGAGCTGACAGAACTAt < 1:6218415/36‑1 (MQ=255)
tttGCGTAAACAGAAATAAAGAGCTGACAGCACTAt < 1:308439/36‑1 (MQ=255)
tttGCGTAAACAGAAATAAAGAGCTGACAGAACTAt > 1:784901/1‑36 (MQ=255)
tttGCGTAAACAGAAATAAAGAGCTGACAGAACTAt < 1:6049872/36‑1 (MQ=255)
ttGCGTAAACAGAAATAAAGAGCTGACAGAACTATg > 1:6684109/1‑36 (MQ=255)
cGTAAACAGAAATAAAGAGCTGACAGAACTATGTTc < 1:4760907/36‑1 (MQ=255)
gTAAACAGAAATAAAGAGCTGACAGCACTATGTTCg < 1:1974598/36‑1 (MQ=255)
gTAAACAGAAATAAAGAGCTGACAGAACTATGTTCg < 1:5287336/36‑1 (MQ=255)
aaCAGAAATAAAGAGCTGACAGCACTATGTTCGaac > 1:3420122/1‑36 (MQ=255)
aaCAGAAATAAAGAGCTGACAGCACTATGTTCGaac > 1:5806668/1‑36 (MQ=255)
cAGAAATAAAGAGCTGACAGCACTATGTTCGaacaa > 1:4287249/1‑36 (MQ=255)
gAAATAAAGAGCTGACAGCACTATGTTCGAACAAcg > 1:3431811/1‑36 (MQ=255)
gAAATAAAGAGCTGACAGCACTATGTGAGAACAAcg > 1:4268125/1‑36 (MQ=37)
gAAATAAAGAGCTGACAGAACTATGTTCGAACAAcg > 1:3511907/1‑36 (MQ=255)
aaaTAAAGAGCTGACAGAACTATGTTCGAACAAcgc > 1:6861586/1‑36 (MQ=255)
aaTAAAGAGCTGACAGCACTATGTTCGAACAAcgcg < 1:875434/36‑1 (MQ=255)
aTAAAGAGCTGACAGCACTATGTTCGAACAACGCGt < 1:3984671/36‑1 (MQ=255)
aTAAAGAGCTGACAGCACTATGTTCGAACAACGCGt > 1:3999363/1‑36 (MQ=255)
aTAAAGAGCTGACAGCACTATGTTCGAACAACGCGt > 1:5309010/1‑36 (MQ=255)
aTAAAGAGCTGACAGCACTATGTTCGAACAACGCGt < 1:3169738/36‑1 (MQ=255)
aaaGAGCTGACAGAACTATGTTCGAACAACGCGTaa > 1:3329014/1‑36 (MQ=255)
aaGAGCTGACAGCAATATGTTCGAACAACGCGTaaa < 1:51076/36‑1 (MQ=37)
aaGAGCTGAAAGCATTATTTTCTAACAACGCGTaaa < 1:4380529/36‑1 (MQ=16)
agagCTGACAGAACTATGTTCGAACAACGCGTAAAt > 1:381336/1‑36 (MQ=255)
gagCTGACAGCACTATGTTCGAACAACGCGTAAAtt < 1:2615538/36‑1 (MQ=255)
gagCTGACAGCACTATGTTCGAACAACGCGTAAAtt < 1:2612656/36‑1 (MQ=255)
agCTGACAGCACTATGTTCGAACAACGCGTAAATTc > 1:4167079/1‑36 (MQ=255)
gCTGACAGCACTATGTTCGAACAACGCGTAAATTCt < 1:7708761/36‑1 (MQ=255)
gCTGACAGAACTATGTTCGAACAACGCGTAAATTCt < 1:3255369/36‑1 (MQ=255)
gCTGACAGAACTATGTTCGAACAACGCGTAAATTCt > 1:3127878/1‑36 (MQ=255)
tGACAGCACTATGTTCGAACAACGCGTAAATTCTGa < 1:1559236/36‑1 (MQ=255)
tGACAGAACTATGTTCGAACAACGCGTAAATTCTGa > 1:7368843/1‑36 (MQ=255)
gACAGCACTATGTTCGAACAACGCGTAAATTCTGAc > 1:29892/1‑36 (MQ=255)
cAGAACTATGTTCGAACAACGCGCAAATTCTGACGt > 1:7623075/1‑36 (MQ=255)
gAACTATGTTCGAACAACGCGTAAATTCTGACGTAc < 1:4565107/36‑1 (MQ=255)
gAACTATGTTCGAACAACGCGTAAATTCTGACGTAc > 1:5346561/1‑36 (MQ=255)
aaCTATGTTCGAACAACGCGTAAATTCTGACGTACt > 1:6003846/1‑36 (MQ=255)
aaCTATGTTCGAACAACGCGTAAATTCTGACGTACt > 1:6699860/1‑36 (MQ=255)
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AAAATTTTGCGTAAACAGAAATAAAGAGCTGACAGAACTATGTTCGAACAACGCGTAAATTCTGACGTACT > REL606/3339123‑3339193
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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