Predicted mutation
evidence seq id position mutation freq annotation gene description
JC REL606 3,289,962 Δ16 bp 91.9% coding (96‑111/4554 nt) gltB → glutamate synthase, large subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 32899613 (0.050)57 (0.920) 41/70 NT 91.9% coding (95/4554 nt) gltB glutamate synthase, large subunit
?REL606 3289978 = 7 (0.110)coding (112/4554 nt) gltB glutamate synthase, large subunit

GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961
...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012
                                                                      
GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATC                                    >  1:2535021/1‑36 (MQ=255)
 GGTTCCCGCAGAGCCTTGGGGAGGTTCACGATATCT                                   >  1:1784363/1‑36 (MQ=255)
  GTTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTT                                  >  1:4769754/1‑36 (MQ=255)
  GTTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTT                                  >  1:1935873/1‑36 (MQ=255)
   TTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTTG                                 <  1:239180/36‑1 (MQ=255)
   TTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTTG                                 >  1:2748387/1‑36 (MQ=255)
     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               >  1:1939056/1‑36 (MQ=255)
     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               <  1:7470444/36‑1 (MQ=255)
     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               >  1:721690/1‑36 (MQ=255)
     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               <  1:6030321/36‑1 (MQ=255)
       CGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAG                             <  1:2252758/36‑1 (MQ=255)
        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            >  1:3754236/1‑36 (MQ=255)
        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            <  1:3398774/36‑1 (MQ=255)
         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           >  1:5238448/1‑36 (MQ=255)
         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           <  1:821992/36‑1 (MQ=255)
          AGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGGA                          >  1:6940953/1‑36 (MQ=255)
          AGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGGA                          >  1:1494100/1‑36 (MQ=255)
           GAGCCTGGGGGAGGTTCACGATATCTTGAGAGGGAT                         <  1:2703217/36‑1 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      >  1:6878744/1‑36 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:6854547/36‑1 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:5724242/36‑1 (MQ=255)
              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:1691600/36‑1 (MQ=255)
               CTGGGGGAGGTTCACGATATCTTGAGAGGGATAACT                     <  1:7170948/36‑1 (MQ=255)
                TGGGGGAGGTTCACGATATCTTGAGAGGGATAACTG                    >  1:465866/1‑36 (MQ=255)
                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   >  1:2110004/1‑36 (MQ=255)
                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   <  1:4425170/36‑1 (MQ=255)
                 GGGGGAGGTTCAAGATATCTTGAGAGGGATAACTGT                   <  1:7492848/36‑1 (MQ=255)
                  GGGGAGGTTCACGATATCTTGAGAGGGATAACTGTG                  >  1:4479537/1‑36 (MQ=255)
                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 >  1:3397284/1‑36 (MQ=255)
                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 >  1:5476304/1‑36 (MQ=255)
                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                >  1:4092632/1‑36 (MQ=40)
                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                <  1:4073875/36‑1 (MQ=40)
                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               <  1:2437678/36‑1 (MQ=38)
                       GGTTCACGATATCTTGAGAGGGATAACTGTGGTTTC             >  1:7591963/1‑36 (MQ=32)
                       GGTTCACGATATCTTGAGAGGGATAACTGTGGTTTC             <  1:6755974/36‑1 (MQ=32)
                       GGTTCACGATATCTTGAGAGGGATAACTGTGGTTTC             <  1:3366475/36‑1 (MQ=32)
                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            >  1:8011210/1‑36 (MQ=1)
                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            >  1:7434715/1‑36 (MQ=1)
                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            <  1:7061531/36‑1 (MQ=1)
                         TTCACGATATCTTGAGAGGGATAACTGTGGTTTCGG           <  1:5844015/36‑1 (MQ=1)
                         TTCACGATATCTTGAGAGGGATAACTGTGGTTTCGG           <  1:6284943/36‑1 (MQ=1)
                          TCACGATATCTTGAGAGGGATAACTGTGGTTTCGGC          >  1:5505034/1‑36 (MQ=1)
                          TCACGATATCTTGAGAGGGATAACTGTGGTTTCGGC          >  1:238133/1‑36 (MQ=1)
                           CACGATATCTTGAGAGGGATAACTGTGGTTTCGGCC         >  1:478695/1‑36 (MQ=1)
                           CACGATATCTTGAGAGGGATAACTGTGGTTTCGGCC         <  1:2135234/36‑1 (MQ=1)
                            ACGATATCTTGAGAGGGATANCTGTGGTTTCGGCCT        >  1:2025370/1‑36 (MQ=1)
                             CGATATCTTGAGAGGGATAACTATGGTTTCGGCCTG       >  1:6099526/1‑36 (MQ=0)
                              GATATCTTGAGAGGGATAACTGTGGTTTCGGCCTGA      <  1:4172767/36‑1 (MQ=1)
                              GATATCTTGAGAGGGATAACTGTGGTTTCGGCCTGA      <  1:4189255/36‑1 (MQ=1)
                               ATATCTTGAGAGGGATAACTGTGGTTTCGGCCTGAT     >  1:862925/1‑36 (MQ=1)
                                TATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATC    <  1:2969510/36‑1 (MQ=1)
                                TATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATC    <  1:7927168/36‑1 (MQ=1)
                                 ATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCG   >  1:3213557/1‑36 (MQ=1)
                                 ATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCG   <  1:8127944/36‑1 (MQ=1)
                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  1:3005160/1‑36 (MQ=1)
                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  1:6092144/1‑36 (MQ=1)
                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  1:3863835/1‑36 (MQ=1)
                                                                      
GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961
...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 24 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG