New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3434228 =39 (0.860)6 (0.130) 4/52 NT 15.0% noncoding (2/768 nt) IS1 repeat region
?REL606 = 4568881 29 (0.480)coding (374/2151 nt) yjiY predicted inner membrane protein

CCAGCAGCCGCAGGACAGCTACGTGCTGGCAGATGTGCTGGCGG...................................  <  REL606/3434271‑3434228
...................................TGCTGGCGGGGGTAGTGCTGGCCGGTGCGGTACAGGACTTTATG  <  REL606/4568881‑4568847
                                                                               
          CAGGACAGCTACGTGCTGGCAGATGTGCTGGCGGGG                                   >  1:3474554/1‑36 (MQ=255)
           AGGACAGCTACGTGCTGGCAGATGTGCTGGCGGGGG                                  >  1:4239415/1‑36 (MQ=255)
             GACAGCTACGTGCTGGCAGATGTGCTGGCGGGGatg                                >  1:3208921/1‑33 (MQ=255)
             GACAGCTACGTGCTGGCAGATGTGCTGGCGGGGGTt                                >  1:5668887/1‑35 (MQ=255)
                AGCTACGTGCTGGCAGATGTGCTGGCGGGGGTGGTG                             >  1:1842650/1‑36 (MQ=255)
                 GCTACGTGCTGGCAGATGTGCTGGCGGGGGTTGTGC                            >  1:2100801/1‑36 (MQ=255)
                                                                               
CCAGCAGCCGCAGGACAGCTACGTGCTGGCAGATGTGCTGGCGG...................................  <  REL606/3434271‑3434228
...................................TGCTGGCGGGGGTAGTGCTGGCCGGTGCGGTACAGGACTTTATG  <  REL606/4568881‑4568847

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 18 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG