Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,672,722 | G→T | 14.1% | L199L (CTG→CTT) | ppnK → | inorganic polyphosphate/ATP‑NAD kinase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,672,722 | 0 | G→T | 14.1% | 3.7 ‑3.1 ‑0.1 | 37 | 597 | ppnK | inorganic polyphosphate/ATP‑NAD kinase |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (13/18): total (19/18) | ||||||||||
Fisher's exact test strand distribution p-value = 4.55e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.66e-01 |
CGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTACCCTGGTGCCCAT > REL606/2672689‑2672757
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cGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGAc < 1:5577665/36‑1 (MQ=255)
gCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGAcc < 1:7197637/36‑1 (MQ=255)
tATTCCCTCTCTGCAGGCGGTCCTATTCTGAccccc < 1:5928887/36‑1 (MQ=255)
aTTCCCTCTCTGCAGGCGGTCCTTTTTTTTCCCCct > 1:600867/1‑36 (MQ=19)
ttCCCTCTCTGCAGGCGGTCCTATTCTGACCCCctc < 1:5332202/36‑1 (MQ=255)
ttCCCTCTCTGCAGGCGGTCCTATTCTGACCCCctc < 1:7518066/36‑1 (MQ=255)
tCCCTCTCTGCAGGCGGTCCTATTCTGACCCCctct < 1:5818064/36‑1 (MQ=255)
cccTCTCTGCAGGCGGTCCTATTCTGACCCCctctc < 1:6488136/36‑1 (MQ=255)
cccTCTCTGCAGGCGGTCCTATTCTGACCCCctctc < 1:7744810/36‑1 (MQ=255)
cccTCTCTGCAGGCGGTCCCTTTCTGACCCCctctc > 1:4806088/1‑36 (MQ=38)
ccgctctGCAGGCGGTCCTATTCTGACCCCctctct < 1:2698272/33‑1 (MQ=255)
ccTCTCTGCAGGCGGTCCTATTTTTACCCCctctct > 1:1967204/1‑36 (MQ=37)
tctctGCAGGCGGTCCTCTTTTTACCCCccctcctg > 1:3708807/1‑33 (MQ=255)
tctctGCAGGCGGTCCTATTCTGACCCCCTCTCTgg < 1:5546429/36‑1 (MQ=255)
ctctGCAGGCGGTCCTTTTTTTTCCCCccctctttg > 1:5536205/1‑33 (MQ=9)
ctctGCAGGCGGTCCTATTCTTACCCCctctcttgg > 1:1961590/1‑33 (MQ=38)
tctGCAGGCGGTCCTATTCTGACCCCCTCTCTGGAt < 1:1863794/36‑1 (MQ=255)
tGCAGGCGGTCCTATTCTGACCCCCTCTCTGGATGc < 1:3441851/36‑1 (MQ=255)
tGCAGGCGGTACTTTTTTCACCCCCTCCCCGGGTGc > 1:788750/1‑36 (MQ=0)
aGGCGGTCCTATTCTGACCCCCTCTCTGGATGCGAt < 1:4158800/36‑1 (MQ=255)
ggCGGTCCTATTCTGACCCCCTCTCTGGATGCGAtt > 1:1474508/1‑36 (MQ=255)
gCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTa > 1:614025/1‑36 (MQ=255)
gCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTa < 1:409335/36‑1 (MQ=255)
cGGTCCTATTCTGACCCCCTCTCTGGATGCGATTAc > 1:5550055/1‑36 (MQ=255)
gTCCTATTCTGACCCCCTCTCTGGATGCGATTAccc < 1:1268770/36‑1 (MQ=255)
ccTATTCTGACCCCCTCTCTGGATGCGATTACCCTg > 1:346974/1‑36 (MQ=255)
tATTCTGACCCCCTCTCTGGATGCGATTACCCTGGt > 1:5112969/1‑36 (MQ=255)
tATTCTGACCCCCTCTCTGGATGCGATTACCCTGGt < 1:6863947/36‑1 (MQ=255)
aTTCTGACCCCCTCTCTGGATGCGATTACCCTGGTg > 1:5242731/1‑36 (MQ=255)
aTTCTGACCCCCTCTCTGGATGCGATTACCCTGGTg > 1:7167853/1‑36 (MQ=255)
aTTCTGACCCCCTCTCTGGATGCGATTACCCTGGTg > 1:7171800/1‑36 (MQ=255)
tCTGACCCCCTCTCTGGATGCGATTACCCTGGTGcc > 1:4979204/1‑36 (MQ=255)
tCTGACCCCCTCTCTGGATGCGATTACCCTGGTGcc < 1:4275395/36‑1 (MQ=255)
tCTGACCCCCTCTCTGGATGCGATTACCCTGGTGcc > 1:2041844/1‑36 (MQ=255)
tCTGACCCCCTCTCTGGATGCGATTACCCTGGTGcc > 1:1647465/1‑36 (MQ=255)
cTGACCCCCTCTCTGGATGCGATTACCCTGGTGccc > 1:4383002/1‑36 (MQ=255)
tGACCCCCTCTCTGGATGCGATTACCCTGGTGCCCa < 1:1659560/36‑1 (MQ=255)
gACCCCCTCTCTGGATGCGATTACCCTGGTGCCCAt < 1:7637624/36‑1 (MQ=255)
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CGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTACCCTGGTGCCCAT > REL606/2672689‑2672757
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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