Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,573,574 | G→C | 13.8% | G83G (GGC→GGG) | yhiQ ← | predicted SAM‑dependent methyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,573,574 | 0 | G→C | 13.8% | 2.5 ‑2.5 0.0 | 42 | 249 | yhiQ | predicted SAM‑dependent methyltransferase |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (14/21): total (15/27) | ||||||||||
Fisher's exact test strand distribution p-value = 7.85e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCATCCACCACATCCGGCAAATAATCGCCTTTAATGCCCACCGCTTTCGCCACCGCCTCACCGCGACCA > REL606/3573539‑3573607
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gaaTCCACCACATCCGGCAAATAATCGCCTTTAATg < 1:7006984/34‑1 (MQ=255)
gCATCCACCACATCCGGCAAATAATCGCCTTTAATg > 1:1149301/1‑36 (MQ=255)
cATCCACCACATCCGGCAAATAATCGCCTTTAATGc < 1:1621788/36‑1 (MQ=255)
aTCCACCACATCCGGCAAATTATTGCCTTTAAGGcc > 1:3154195/1‑36 (MQ=25)
aTCCACCACATCCGGCAAATAATCGCCTTTAATTcc > 1:3162691/1‑36 (MQ=255)
aTCCACCACATCCGGCAAATAATCGCCTTTAATGcc > 1:1442205/1‑36 (MQ=255)
aTCCACCACATCCGGCAAATAATCGCCTTTAATGcc < 1:6553640/36‑1 (MQ=255)
aTCCACCACATCCGGCAAATAATCGCCTTTAATGcc < 1:5579254/36‑1 (MQ=255)
ccaccaCATCCGGCAAATAATCGCCTTTAATGCCCa > 1:1183582/1‑36 (MQ=255)
caccacATCCGGCAAATAATCGCCTTTAATGCCCAc > 1:5690508/1‑36 (MQ=255)
caccacATCCGGCAAATAATCGCCTTTAATGCCCAc < 1:4387211/36‑1 (MQ=255)
accacATCCGGCAAATAATCGCCTTTAATGCCCAcc < 1:1853385/36‑1 (MQ=255)
ccacATCCGGCAAATAATCGCCTTTAATGCCCACCg < 1:7403465/36‑1 (MQ=255)
cacaTCCGGCAAATAATCGCCTTTAATGCCCACCGc > 1:1734443/1‑36 (MQ=255)
acaTCCGGCAAATAATCGCCTTTAATGCCCACCGCt < 1:3879592/36‑1 (MQ=255)
acaTCCGGCAAATAATCGCCTTTAATGCCCACCGCt < 1:5392223/36‑1 (MQ=255)
aTCCGGCAAATAATCGCCTTTAATGCCCACCGCttt > 1:2615804/1‑36 (MQ=255)
aTCCGGCAAATAATCGCCTTTAATGCCCACCGCttt < 1:6859318/36‑1 (MQ=255)
aTCCGGCAAATAATCGCCTTTAATGCCCACCGCttt < 1:363830/36‑1 (MQ=255)
cgtcAAATAATCGCCTTTAATGCCCACCGCTTTCGc < 1:5731521/33‑1 (MQ=255)
cGGCAAATAATCGCCTTTAATGCCCACCGCTTTCGc > 1:1266312/1‑36 (MQ=255)
cGGCAAATAATCGCCTTTAATGCCCACCGCTTTCGc > 1:5933802/1‑36 (MQ=255)
ggCAAATAATCGCCTTTAATGCCCACCGCTTTCGcc < 1:3264907/36‑1 (MQ=255)
ggCAAATAATCGCCTTTAATGCCCACCGCTTTCGcc < 1:6067734/36‑1 (MQ=255)
gCAAATAATCGCCTTTAATGCCCACCGCTTTCGCCa < 1:2514385/36‑1 (MQ=255)
gCAAATAATCGCCTTTAATGCCCACCGCTTTCGCCa < 1:1478360/36‑1 (MQ=255)
aaaTAATCGCCTTTAATGCCCACCGCTTTCGCCAcc < 1:5654888/36‑1 (MQ=255)
aaaTAATCGCCTTTAATGCCCACCGCTTTCGCCAcc < 1:1625030/36‑1 (MQ=255)
aaaTAATCACCTTTAATGCCCTCGGCTTTCGCCAcc < 1:5652434/36‑1 (MQ=21)
aataatCGCCTTTAATGCCCACCGCTTTCGCCACCg < 1:3457621/36‑1 (MQ=255)
aatCGCCTTTAATGCCCACCGCTTTCGCCACCGCCt > 1:6626326/1‑36 (MQ=255)
aatCGCCTTTAATGCCCACCGCTTTCGCCACCGCCt > 1:6532402/1‑36 (MQ=255)
cGCCTTTAATGCCCACCGCTTTCGCCACCGCCTCAc < 1:7513991/36‑1 (MQ=255)
cGCCTTTAATGCCCACCGCTTTCGCCACCGCCTCAc < 1:4809955/36‑1 (MQ=255)
gCCTTAAATCCCCACCGCTTTCCCCACCGCCTCAcc < 1:5404239/36‑1 (MQ=25)
cccTTTAACCCCCCCCGTTTCCGCCACCGCCTCAcc < 1:2782578/35‑1 (MQ=16)
ccTTAAATCCCCCCCGCTTTCGCCACCGCCTCACcg < 1:4851784/36‑1 (MQ=25)
cTTTAACCCCCCCCGCTTTCCCCACCGCCTCACcgc < 1:3824477/36‑1 (MQ=19)
cTTAAATCCCCCCCGCTTACACCACCGCCTCACcgc < 1:2022114/36‑1 (MQ=16)
ttAATGCCCACCGCTTTCGCCACCGCCTCACCGCGa > 1:5771435/1‑36 (MQ=255)
aaTCCCCACCGCTTCCGCCACCGCCTCACCGCGacc < 1:1546145/36‑1 (MQ=37)
aTGCCCACCGCTTTCGCCACCGCCTCACCGCGaccc > 1:3249715/1‑35 (MQ=255)
aTGCCCACCGCTTTCGCCACCGCCTCACCGCGacca > 1:6375982/1‑36 (MQ=255)
aTGCCCACCGCTTTCGCCACCGCCTCACCGCGacca > 1:675952/1‑36 (MQ=255)
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GCATCCACCACATCCGGCAAATAATCGCCTTTAATGCCCACCGCTTTCGCCACCGCCTCACCGCGACCA > REL606/3573539‑3573607
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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