Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,724,266 | 0 | C→A | 14.1% | 12.3 ‑15.1 0.0 | 96 | 360 | srlR | DNA‑bindng transcriptional repressor |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/14): ref base (62/18): total (63/33) | ||||||||||
Fisher's exact test strand distribution p-value = 2.74e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 102 total aligned reads displayed.
CTGCTCTCGCGCTTTAATAACATCACGGTGATGACCAACAGCCTGCATATCGTCAATGCGCTATCCGAACT > REL606/2724231‑2724301
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cTGCTCTCGCGCTTTAATAACATCACGGTGATGAcc > 1:936640/1‑36 (MQ=255)
tGCTCTCGCGCTTTAATAACATCGCGGTGATGTCCa < 1:3777010/36‑1 (MQ=37)
gCTCTCGCGCTTTAATAACATCACGGTGATGACCaa > 1:4965462/1‑36 (MQ=255)
gCTCTCGCGCTTTAATAACATCACGGTGATGACCaa < 1:2666672/36‑1 (MQ=255)
tctcGCGCTTTAATAACATCACGGTGATGACCAACa < 1:1956044/36‑1 (MQ=255)
tcGCGCTTTAATAACATCACGGTGATGACCAACAGc < 1:4651736/36‑1 (MQ=255)
tcGCGCTTTAATAACATCACGGTGATGACCAACAGc > 1:472750/1‑36 (MQ=255)
tcGCGCTTTAATAACATCACGGTGATGACCAACAGc < 1:4344605/36‑1 (MQ=255)
tcGCGCTTTAATAACATCACGGTGATGACCAACAGc < 1:4295937/36‑1 (MQ=255)
cgcgCTTTAATAACATCACGGTGATGACCAACAGcc > 1:1176235/1‑36 (MQ=255)
cgcgCTTTAATAACATCACGGTGATGACCAACAGcc > 1:1484763/1‑36 (MQ=255)
gcgcTTTAATAACATCACGGTGATGACCAACAGCCt > 1:3105044/1‑36 (MQ=255)
gcgcTTTAATAACATCACGGTGATGACCAACAGCCt > 1:5129803/1‑36 (MQ=255)
gcgcTTTAATAACATCACGGTGATGACCAACAGCCt < 1:2640188/36‑1 (MQ=255)
gcgcTTTAATAACATCACGGTGATGACCAACAGCCt < 1:5708093/36‑1 (MQ=255)
cgcTTTAATAACATCACGGGGATGACCAACAGCCTg > 1:204797/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:1312581/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc < 1:4768676/36‑1 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:5865424/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:4932494/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:1441797/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:1650816/1‑36 (MQ=255)
gcTTTAATAACATCACGGTGATGACCAACAGCCTGc > 1:5208717/1‑36 (MQ=255)
gcTTTAATAACATCACGGCGATGACCAACAGCCTGc > 1:4472223/1‑36 (MQ=255)
tttGATAACATCACGGTGATGACCAACAGCCTGCat < 1:4644102/36‑1 (MQ=255)
ttAATAACATCAGGGTGATGACCAACAGCCTGCata > 1:4717168/1‑36 (MQ=255)
ttAATAACATCACGTTCATGACCAACAGCCTGCata < 1:534745/36‑1 (MQ=37)
ttAATAACATCACGGTGATGACCAACAGCCTGCata > 1:3443581/1‑36 (MQ=255)
ttAATAACATCACGGTGATGACCAACAGCCTGCata > 1:2137523/1‑36 (MQ=255)
ttAATAACATCACGGTGATGACAAACAGCCTGCata < 1:3898872/36‑1 (MQ=255)
taataaCATCACGGTGATGACCAACAGCCTGCatat < 1:4011003/36‑1 (MQ=255)
taataaCACCACGTTAATAACCAACAGCCTGCatat < 1:2053948/36‑1 (MQ=16)
aataaCATCACGGTGATGACAAACAGCCTGCATATc < 1:3541304/36‑1 (MQ=255)
aataaCATCACGGCGACGACAAACAGCCTGCATATc > 1:2299705/1‑36 (MQ=21)
aataaCAGCACGGTGATGACCAACAGCCTGCATATc < 1:2373828/36‑1 (MQ=255)
ataaCATCACGGTGATGACCAACAGCCTGCATATCg < 1:3662949/36‑1 (MQ=255)
taaCATCGCGGTGAGCAAAAACAGCCTGCATATCGt < 1:4186779/36‑1 (MQ=12)
taaCATCACGGTGATGACCAACAGCCTGCATATCGt > 1:868722/1‑36 (MQ=255)
taaCATCACGGTGATGACCAACAGCCTGCATATCGt > 1:1466052/1‑36 (MQ=255)
taaCATCACGGTGATGACCAACAGCCTGCATATCGt > 1:1533055/1‑36 (MQ=255)
taaCATCACGGTGATGACCAACAGCCTGCATATCGt > 1:1349032/1‑36 (MQ=255)
taaCATCACGGTGATGACCAACAGCCTGCATATCGt > 1:1156064/1‑36 (MQ=255)
taaCATCACGGTGATCACAAACAGCCTGCATATCGt < 1:3249211/36‑1 (MQ=37)
aaaCATCAGGGTGATGACAAACAGCCTGCATATCGt < 1:3820315/35‑1 (MQ=25)
aaaaTCCCGGTGATAACAAAAAGCCTGCATATCGTc < 1:4514130/33‑1 (MQ=16)
aaCATCACGGTGATGACCAACAGCCTGCATATCGTc > 1:563511/1‑36 (MQ=255)
aaCATCACGGTGATGACCAACAGCCTGCATATCGTc > 1:5604075/1‑36 (MQ=255)
cATCACGGTGATGACCAACAGCCTGCATATCGTCaa > 1:711149/1‑36 (MQ=255)
aacACGGTGATGACAAACAGCCTGCATATCGTCAAt < 1:1951937/34‑1 (MQ=37)
aTCACGGTGATGACCAACAGCCTGCATATCGTCAAt > 1:4897389/1‑36 (MQ=255)
aTCACGGTGATGACCAACAGCCTGCATATCGTCAAt > 1:179772/1‑36 (MQ=255)
aTCACGGTGATGACCAACAGCCTGAATATCGTCAAt > 1:4123235/1‑36 (MQ=255)
aTCACGGTGATGACCAACAGCCTCCATATCGTCAAt > 1:4986825/1‑36 (MQ=255)
aTCACGGTGATGACCAAAAGCCTGCATAGCGACAAt > 1:4813205/1‑36 (MQ=25)
aTCACGGTGATGAACAACAGCCTGCATATCGTCAAt > 1:5179176/1‑36 (MQ=255)
tCACGGTGATGACCAACAGCCTGCATATCGTCAATg > 1:514557/1‑36 (MQ=255)
ccACGGGAATGACAAACAGCCTGCATATCGTCAATg < 1:4977988/35‑1 (MQ=25)
cACGGTGATGACCAACAGCCTGCATATCGTCAATgc > 1:1844508/1‑36 (MQ=255)
cACGGTGATGACCAACAGCCTGCATATAGTCAATgc > 1:4852796/1‑36 (MQ=255)
cACGGTGATCCAAAACAGCCTGCATATCGTCAATgc < 1:801991/36‑1 (MQ=19)
cGGTGATGACCAACAGCCTGCATATCGTCAATgcgc > 1:5311954/1‑36 (MQ=255)
cGGAGATGACAAACAGCCTGCATATCGTCAATgcgc < 1:5100363/36‑1 (MQ=37)
ggTGATGACCAACAGCCTGCATATCGTCAATgcgca > 1:565577/1‑35 (MQ=255)
ggTGATGACCAACAGCCTGCATATCGTCAATGCGCt > 1:5428421/1‑36 (MQ=255)
ggTGATGACCAACAGCCTGCATATCGTCAATGCGCt > 1:3923398/1‑36 (MQ=255)
ggTGATGACCAACAGCCTGCATATCGTCAATGCGCt > 1:2423106/1‑36 (MQ=255)
ggTGATGACCAACAGCCTGCATATCGTCAATGCGCt > 1:1134863/1‑36 (MQ=255)
ggTGATGACCAACAGCCTGCATATCGTAAATGCGCt > 1:1393792/1‑36 (MQ=255)
ggTGATGACAAACAGCCTGCATATCGTCAATGCGCt < 1:5178154/36‑1 (MQ=255)
ggTGATGAACAACAGCCTGCATATCATCAAATCGCt > 1:4344749/1‑36 (MQ=16)
ggTGATAACAAACAGCCTGCATATCGTCAATGCGCt < 1:1713224/36‑1 (MQ=37)
ggTGAGGACAAACAGCCTGCATATCGTCAATGCGCt < 1:4773413/36‑1 (MQ=37)
ggTAATGCCGAACAGCCTGCATATCGTCAATGCGCt < 1:449125/36‑1 (MQ=21)
gTGATGACCAACAGCCTGCATATCGTCAATGCGCTa > 1:2047574/1‑36 (MQ=255)
gTGATGACCAACAGCCTGCATATCGTCAATGCGCTa > 1:845520/1‑36 (MQ=255)
tgatgaCCAACAGCCTGCATATCGTCAATGCGCTAt > 1:520901/1‑36 (MQ=255)
tgatgaCCAACAGCCTGCATATCGTCAATGCGCTAt > 1:2728510/1‑36 (MQ=255)
tgatgaCCAACAGCCTGCATATCGTCAATGCGCTAt > 1:2793383/1‑36 (MQ=255)
taggaCCAACAGCATTCATATCGTCAATGCGCTATc < 1:140112/33‑1 (MQ=21)
gttgaCAAACAGCCTGCATATCGTCAATGCGCTATc < 1:5314227/34‑1 (MQ=37)
gatgaCCAACAGCCTGCATATCGTCAATGCGCTATc > 1:893747/1‑36 (MQ=255)
gatgaCCAACAGCCTGCATATCGTCAATGCGCTATc > 1:2363396/1‑36 (MQ=255)
aatgaCCAACAGCCTGCATATCGTCAATGCGCTATc < 1:3169503/35‑1 (MQ=255)
atgaCCAACAGCCTGCATATCGTCAATGCGCTATcc > 1:4180735/1‑36 (MQ=255)
atgaCCAACAGCCTGCATATCGTCAATGCGCTATcc > 1:1886688/1‑36 (MQ=255)
atgaCCAACAGCCTGCATATCGTCAATGCGCTATcc > 1:2851753/1‑36 (MQ=255)
atgaCCAACAGCCTGCATATCGTCAATGCGCTATcc > 1:2806899/1‑36 (MQ=255)
gaCCAACAGCCTGCATATCGTCAATGCGCTATCCGa > 1:2174372/1‑36 (MQ=255)
gaCCAACAGCCTGCATATCGTCAATGCGCTATCCGa > 1:1877970/1‑36 (MQ=255)
gaCCAACAGCCTGCATATCGTAAATGCGCTATCCGa > 1:4770110/1‑36 (MQ=255)
caCCAACAGCCTGACTATCGTCAATGCGCTATCCGa < 1:4497045/35‑1 (MQ=37)
aCCAACAGCCTGCATATCGTCAATGCGCTATCCGaa > 1:4893786/1‑36 (MQ=255)
aCCAACAGCCTGCATATCGTCAATGCGCTATCCGaa > 1:3617567/1‑36 (MQ=255)
aCCAACAGCCTGCATATCGTCAATGCGCTATCCGaa > 1:2443108/1‑36 (MQ=255)
aCCAACAGCCTGCATATCGTCAATGCGCTATCCGaa > 1:3994416/1‑36 (MQ=255)
ccACCAGCCTGCATATCGTCAATGCGCTATCCGAAc < 1:1040662/36‑1 (MQ=255)
ccAACAGCCTGCATATCGTCAATGCGCTATCCGAAc > 1:2881011/1‑36 (MQ=255)
ccAACAGCCTGCATATCGTCAATGCGCTATCCGAAc < 1:2973665/36‑1 (MQ=255)
cAACAGCCTGCATATCGTCAATGCGCTATCCGAACt > 1:2294007/1‑36 (MQ=255)
cAACAGCCTGCATATCGTCAATGCGCTATCCGAACt < 1:252336/36‑1 (MQ=255)
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CTGCTCTCGCGCTTTAATAACATCACGGTGATGACCAACAGCCTGCATATCGTCAATGCGCTATCCGAACT > REL606/2724231‑2724301
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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