Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,455,519 | C→G | 8.7% | A52P (GCC→CCC) | pyrB ← | aspartate carbamoyltransferase catalytic subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,455,519 | 0 | C→G | 8.7% | 2.5 ‑3.1 ‑0.0 | 46 | 154 | pyrB | aspartate carbamoyltransferase catalytic subunit |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (18/24): total (22/24) | ||||||||||
Fisher's exact test strand distribution p-value = 4.48e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.96e-01 |
AAGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGCAATGACTTTGTGCTTCA > REL606/4455486‑4455554
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aaGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCtt < 1:673197/36‑1 (MQ=255)
aaGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCtt < 1:1912625/36‑1 (MQ=255)
aaGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCtt < 1:4501376/36‑1 (MQ=255)
gTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCg < 1:491658/36‑1 (MQ=255)
tttCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCga < 1:4479624/36‑1 (MQ=255)
tttCGAAAGAGAGGCGGGGATGGGGAGGGGGttttt > 1:1944199/1‑33 (MQ=12)
ttCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCgaa < 1:2214276/36‑1 (MQ=255)
ttCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCgaa < 1:4970626/36‑1 (MQ=255)
cGAAAGAGAGGCGGGGACGGGGAGAGGGTTCgaagg > 1:7376469/1‑35 (MQ=25)
aaaGAGAGGCGGGTACGGGTAGAGGGTTTGGAGaaa > 1:95277/1‑36 (MQ=21)
aaGGGAGGCGGGTACGGGTAGAGGCTTCGAAGAAAc < 1:3036549/36‑1 (MQ=255)
agagagGCGGGGACGGGGTGAGGGTTCTAATaaaaa > 1:671802/1‑34 (MQ=9)
gagGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCt < 1:6542413/36‑1 (MQ=255)
gagGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCt > 1:1043128/1‑36 (MQ=255)
agGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTg < 1:6848041/36‑1 (MQ=255)
agGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTg > 1:2239164/1‑36 (MQ=255)
ggCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTgg < 1:4712545/36‑1 (MQ=255)
gCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGc > 1:5841777/1‑36 (MQ=255)
gggtacgggtaGAGGCTTCGAAGAAACAGCTGGCaa > 1:4179212/1‑36 (MQ=255)
ggtacgggtaGAGGCTTCGAAGAAACAGCTGGCAAt < 1:2699764/36‑1 (MQ=255)
gtaggggtaGAGGCTTCGAAGAAACAGCTGGCAATg < 1:3481348/36‑1 (MQ=255)
tacgggtaGAGGCTTCGACGAAACAGCTGGCAATGa > 1:7075864/1‑36 (MQ=255)
acgggtaGAGGCTTCGAAGAAACAGCTGGCAATGAc > 1:7861990/1‑36 (MQ=255)
acgggtaGAGGCTTCGAAGAAACAGCTGGCAATGAc < 1:1065084/36‑1 (MQ=255)
acgggtaGAGGCTTCGAAGAAACAGCTGGCAATGAc > 1:3336114/1‑36 (MQ=255)
cgggtaGAGGCTTCGAAGAACCAGCTGTCAATTACt < 1:4863373/36‑1 (MQ=25)
cgggtaGAGGCTTCGAAGAAACAGCTGGCAATGACt < 1:4754548/36‑1 (MQ=255)
cgggtaGAGGCTTCGAAGAAACAGCTGGCAATGACt < 1:371816/36‑1 (MQ=255)
cgggtaGAGGCTTCGAAGAAACAGCTGGCAATGACt < 1:7060784/36‑1 (MQ=255)
gggtaGAGGCTTCTAAGAAACAGCTGGCAATGACtt < 1:1205307/36‑1 (MQ=255)
gggtaGAGGCTTCGAAGAAACAGCTGGCAATGACtt > 1:4942812/1‑36 (MQ=255)
gggtaGAGGCTTCGAAGAAACAGCTGGCAATGACtt > 1:4982794/1‑36 (MQ=255)
gggtaGAGGCTTCGAAGAAACAGCTGGCAATGACtt > 1:1999253/1‑36 (MQ=255)
ggtaGAGGCTTCGAAGAAACAGCTGGCAATGACttt < 1:5807701/36‑1 (MQ=255)
ggtaGAGGCTTCGAAGAAACAGCTGGCAATGACttt < 1:1518799/36‑1 (MQ=255)
gtaGAGGCTTCGAAGAAACAGCTGGCAATGACTTtg > 1:4598937/1‑36 (MQ=255)
gtaGAGGCTTCGAAGAAACAGCTGGCAATGACTTtg > 1:7115009/1‑36 (MQ=255)
gtaGAGGCTTCGAAGAAACAGCTGGCAATGACTTtg > 1:3279919/1‑36 (MQ=255)
gtaGAGGCTTCGAAGAAACAGCTGGCAATGACTTtg > 1:3979152/1‑36 (MQ=255)
taGCGGCTTCGAAGAAACAGCTGGCAATGACTTtgt < 1:3915210/36‑1 (MQ=255)
taGAGGCTTCGAAGAAACAGCTGGCAATGACTTtgt < 1:467449/36‑1 (MQ=255)
agagGCTTCGAAGAAACAGCTGGCTATGACTTtgtg > 1:7555637/1‑36 (MQ=255)
agGCTTCGAAGAAACAGCTGGCAATGACTTTGTGCt > 1:5740468/1‑36 (MQ=255)
agGCTTCGAAGAAACAGCTGGCAATGACTTTGTGCt > 1:3658421/1‑36 (MQ=255)
ggCTTCGAAGAACCAGCTGGCAATGACTTTGTGCtt < 1:6456973/36‑1 (MQ=255)
ggCTTCGAAGAAACAGCTGGCAATGACTTTGTGCtt > 1:4928442/1‑36 (MQ=255)
cTTCTAAAAAACAGCTGGCACTGCCTTTGTGCTTCa < 1:723599/36‑1 (MQ=16)
cTTCGAAGAAACAGCTGGCAATGACTTTGTGCTTCa < 1:6176255/36‑1 (MQ=255)
cTTCGAAGAAACAGCTGGCAATGACTTTGTGCTTCa > 1:3154317/1‑36 (MQ=255)
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AAGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGCAATGACTTTGTGCTTCA > REL606/4455486‑4455554
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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