New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1241877 =37 (0.750)8 (0.160) 3/56 NT 19.5% coding (345/1737 nt) ycgO potassium/proton antiporter
?REL606 = 4081036 29 (0.470)intergenic (+124/‑136) sodA/kdgT superoxide dismutase, Mn/2‑keto‑3‑deoxygluconate permease

AATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTT  >  REL606/4081002‑4081071
                                  |                                   
aaTTTCAAAATAAAAACAATGATCCGATAAAAATAa                                    <  1:920134‑M2/36‑2 (MQ=255)
aaTTTAAAAATAAAAACAATGATCCGATAAAAATAa                                    >  1:3682339‑M2/1‑35 (MQ=255)
 aTTTCAAAATAAAAACAATGATCCGATAAAAATAaa                                   >  1:5485179‑M2/1‑34 (MQ=255)
  tttCAAAATAAAAACAGTGATCCGATAAAAATAaaa                                  <  1:6855862‑M2/36‑4 (MQ=255)
  tttAAAAATAAAAACAATGATCCGATAAAAATAaaa                                  >  1:6428957‑M2/1‑33 (MQ=255)
   ttCAAAATAAAAACAATGATCCGATAAAAATAaaac                                 <  1:6594176‑M2/36‑5 (MQ=255)
   ttCAAAATAAAAACAATGATCCGATAAAAATAaaac                                 <  1:1551838‑M2/36‑5 (MQ=255)
    tCAAAATAAAAACAATGATCCGATAAAAATAaaaca                                >  1:8365612‑M2/1‑31 (MQ=255)
       aaaTAAAAACAATGATCCGATAAAAATAAAACAGCg                             >  1:3115308/1‑36 (MQ=255)
        aaTAAAAACAATGATCCGATAAAAATAAAACAGCGt                            <  1:1867657/36‑1 (MQ=255)
          tAAAAACAATGATCCGATAAAAATAAAACAGCGttt                          >  1:6517972/1‑36 (MQ=255)
            aaaaCAATGATCCGATAAAAATAAAACAGCGTTTCa                        <  1:6768273/36‑1 (MQ=255)
            aaaaCAATGATCCGATAAAAATAAAACAGCGTTTCa                        >  1:5775384/1‑36 (MQ=255)
               aCAATGATCCGATAAAAATAAAACAGCGTTTCAAtt                     <  1:2013787/36‑1 (MQ=255)
                  aTGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                  <  1:5956551/36‑1 (MQ=255)
                  aTGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                  >  1:2601525/1‑36 (MQ=255)
                  aTGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                  >  1:576515/1‑36 (MQ=255)
                  aTGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                  >  1:1584571/1‑36 (MQ=255)
                    gATCCGATAAAAATAAAACAGCGTTTCAATTGAtgt                >  1:1253338/1‑36 (MQ=255)
                     aTCCGATAAAAATAAAACAGCGTTTCAATTGAtgtg               <  1:1303219/36‑1 (MQ=255)
                      tCCGATAAAAATAAAACAGCGTTTCAATTGATGTgg              <  1:2927262/36‑1 (MQ=255)
                      tCCGATAAAAATAAAACAGCGTTTCAATTGATGCgg              >  1:49840/1‑36 (MQ=255)
                        aaataaaaataaaacagccacgccgccatcatgccg            >  1:8142531‑M2/3‑11 (MQ=255)
                         gATAAAAATAAAACAGCGTTTCAATTGATGTGGttt           >  1:6827502/1‑36 (MQ=255)
                         gATAAAAATAAAACAGCGTTTCAATTGATGTGGttt           >  1:2022252/1‑36 (MQ=255)
                          ataaaaataaaacagccacgccgccatcatgccggt          >  1:3042008‑M2/1‑9 (MQ=255)
                          ataaaaataaaaCAGCGTTTCAATTGATGTGGtttt          <  1:6892918/36‑1 (MQ=255)
                          ataaaaataaaaCAGCGTTTCAATTGATGTGGtttt          <  1:3034148/36‑1 (MQ=255)
                          ataaaaataaaaCAGCGTTTCAATTGATGTGGtttt          <  1:8404660/36‑1 (MQ=255)
                           taaaaataaaacagccacgccgccatcatgccggtt         >  1:986090‑M2/1‑8 (MQ=255)
                           taaaaataaaacagccacgccgccatcatgccggtt         >  1:6209660‑M2/1‑8 (MQ=255)
                           taaaaataaaaCAGCGTTTCAATTGATGTGGTTTTg         >  1:1111977/1‑36 (MQ=255)
                           aaaagataaaacagccacgccgccatcatgccggtt         >  1:5125927‑M2/2‑8 (MQ=255)
                           aaaaaataaaacagccacgccgccatcatgccggtt         >  1:5703257‑M2/2‑8 (MQ=255)
                            aaaaataaaaCAGCGTTTCAATTGATGTGGTTTTGa        >  1:1080405/1‑36 (MQ=255)
                            aaaaataaaaCAGCGTTTCAATTGATGTGGTTTTGa        >  1:2707688/1‑36 (MQ=255)
                            aaaaataaaaCAGCGTTTCAATTGATGTGGTTTTGa        >  1:4917731/1‑36 (MQ=255)
                              agataaaacagccacgccgccatcatgccggttaaa      >  1:2582208‑M2/3‑5 (MQ=255)
                              aaataaaaCAGCGTTGCAATTGATGTGGTTTTGATc      <  1:4336750/36‑1 (MQ=255)
                               aataaaaCAGCGTTTCAATTGATGTGGTTTTGATCa     >  1:6379871/1‑36 (MQ=255)
                                ataaaaCAGCGTTTCAATTGATGTGGTTTTGATCAc    >  1:7478255/1‑36 (MQ=255)
                                 taaaacagccacgccgccatcatgccggttaaacca   >  1:6788997‑M2/1‑2 (MQ=255)
                                 taaaaCAGCGTTTCAATTGATGTGGTTTTGATCACt   <  1:4410008/36‑1 (MQ=255)
                                 taaaaCAGCGTTTCAATTGATGTGGTTTTGATCACt   <  1:5787320/36‑1 (MQ=255)
                                 taaaaCAGCGTTTCAATTGATGTGGTTTTGATCACt   <  1:6031/36‑1 (MQ=255)
                                  aaaaCAGCGTTTCAATTGATGTGGTTTTGATCACtt  >  1:5774620/1‑36 (MQ=255)
                                  aaaaCAGCGTTTCAATTGATGTGGTTTTGATCACtt  >  1:7400032/1‑36 (MQ=255)
                                  aaaaCAGCGTTTCAATTGATGTGGTTTTGATCACtt  <  1:8233957/36‑1 (MQ=255)
                                  |                                   
AATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTT  >  REL606/4081002‑4081071

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG