Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,602,297 | C→A | 13.5% | D68Y (GAT→TAT) | ECB_01505 ← | conserved hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,602,297 | 0 | C→A | 13.5% | 2.8 ‑4.4 0.0 | 45 | 202 | ECB_01505 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (1/6): ref base (26/12): total (27/18) | ||||||||||
Fisher's exact test strand distribution p-value = 1.17e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATCCATCAGGCTTGCCACATCCCAAACACGCGGATCAAAACCGCCCCACCACGGCATGTTAATCCGCTT > REL606/1602262‑1602330
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aTCCATCAGGCTTGCCACATCCCAAACACGCGGATc < 1:3480607/36‑1 (MQ=255)
aTCCATCAGGCTTGCCACATCCCAAACACGCGGATc > 1:1431634/1‑36 (MQ=255)
aTCCATCAGGCTTGCCACATCCCAAACACGCGGATc < 1:1519319/36‑1 (MQ=255)
tCCATCATGCTTGCCACATCCCAAACACGCGGATCa < 1:4197194/36‑1 (MQ=255)
tCCATCAGGCTTGCCACATCCCAAACACGCGGATCa > 1:3324830/1‑36 (MQ=255)
tCCATCAGGCTTGCCACATCCCAAACACGCGGATCa < 1:2038642/36‑1 (MQ=255)
ccATCAGGCTTGCCACATCCCAAACACGCGGATCaa < 1:6338566/36‑1 (MQ=255)
cATCAGGCTTGCCACATCCCAAACACGCGGATCaaa < 1:2410101/36‑1 (MQ=255)
cATCAGGCTTGCCACATCCCAAACACGCGGATCaaa < 1:1551963/36‑1 (MQ=255)
aTCAGGCTTGCCACATCCCAAACACGCGGATCaaaa > 1:1676085/1‑36 (MQ=255)
aTCAGGCTTGCCACATCCCAAACACGCGGATCaaaa > 1:8242632/1‑36 (MQ=255)
tCAGGCTTGCCACATCCCAAACACGCGGATCAAAAc > 1:2915891/1‑36 (MQ=255)
cAGGCTTGCCACATCCCAAACACGCGGATCAAAAcc < 1:701448/36‑1 (MQ=255)
cAGGCTTGCCACATCCCAAACACGCGGATCAAAAcc > 1:7713391/1‑36 (MQ=255)
aGGCTTGCCACATCCCAAACACGCTGATCAAAACCg < 1:1231864/36‑1 (MQ=255)
aGGCTTGCCACATCCCAAACACGCGGATCAAAACCg < 1:3755665/36‑1 (MQ=255)
ggCTTGCCACATCCCAAACACGCGGATCAAAACCGc < 1:3332768/36‑1 (MQ=255)
cTTGCCACATCCCAAACACGCGGATCAAAACCGccc < 1:3684828/36‑1 (MQ=255)
cTTGCCACATCCCAAACACGCGGATCAAAACCGccc > 1:6275261/1‑36 (MQ=255)
cTTGCCACATCCCAAACACGCGGATCAAAACCGccc < 1:2478735/36‑1 (MQ=255)
cTTGCCACATCCCAAACACGCGGATCAAAACCGccc > 1:7220255/1‑36 (MQ=255)
ttGCCACATCCCAAACACGCGGATCAAAACCTcccc > 1:6433790/1‑36 (MQ=255)
ttGCCACATCCCAAACACGCGGATCAAAACCGcccc > 1:6789362/1‑36 (MQ=255)
gCCACATCCCAAACACGCGGATCAAAACCGCCccac > 1:3250562/1‑36 (MQ=255)
gCCACATCCCAAACACGCGGATCAAAACCGCCccac > 1:1695121/1‑36 (MQ=255)
ccACATCCCAAACACGCGGATCAAAACCGCCccacc > 1:4701041/1‑36 (MQ=255)
ccACATCCCAAACACGCGGATCAAAACCGCCccacc > 1:2767496/1‑36 (MQ=255)
cacaTCCCAAACACGCGGACCAAAACCGCCacacca > 1:7804933/1‑36 (MQ=18)
acaTCCCAAACACGCGGATCAAAACCGCCCcaccac > 1:1673526/1‑36 (MQ=255)
cccccAAACACGCGGATAAAAACCGCCCCACCACgg < 1:4633022/34‑1 (MQ=18)
aTCCCAAACACGCGGATCAAAACCGCCCCACCACgg > 1:1148628/1‑36 (MQ=255)
ccaaaaCACGCGGAAAAAAACCGCCCCACCACGGCa < 1:3951786/33‑1 (MQ=17)
ccAAACCCGCGGATCAAAACCGCCCCACCACGGCAt < 1:1420795/36‑1 (MQ=255)
caaaaCACGCGGATAAAAACCGCCCCACCACGGCAt < 1:8036184/34‑1 (MQ=17)
cAAACCCGCGTATAAAAACCGCCCCACCACGGCATg < 1:5684927/36‑1 (MQ=14)
aaaCACGCGGAAAAAAACCGCCCCACCACGGCATGt < 1:586978/36‑1 (MQ=18)
acacGCGGATCAAAACCGCCCCACCACGGCATGTTa > 1:6319901/1‑36 (MQ=255)
acacGCGGATCAAAACCGCCCCACCACGGCATGTTa > 1:5704858/1‑36 (MQ=255)
cacGCGGATCAAAACCGCCCCACCACGGCATGTTaa > 1:6187329/1‑36 (MQ=255)
cacGCGGATCAAAACCGCCCCACCACGGCATGTTaa > 1:3181411/1‑36 (MQ=255)
cacGCGAATAAAAACCGCCCCACCACGGCATGTTaa < 1:3516665/36‑1 (MQ=18)
cgcgGATCAAAACCGCCCCACCACGGCATGTTAATc > 1:6541641/1‑36 (MQ=255)
gcgGATCAAAACCGCCCCACCACGGCATGTTAATcc > 1:3499224/1‑36 (MQ=255)
gcgGATCAAAACCGCCCCACCACGGCATGTTAATcc > 1:2387598/1‑36 (MQ=255)
gcgGATCAAAACCGCCCCACCACGGCATGTTAATcc > 1:128341/1‑36 (MQ=255)
gcgGATAAAAACCGCCCCAACACGGCATGTTAATcc > 1:1451802/1‑36 (MQ=18)
cgGATCAAAACCGCCCCACCACGGCATGTTAATCCg > 1:6020175/1‑36 (MQ=255)
aacAAAACCGCCCCACCACGGCATGTTAATCCGCtt < 1:6478277/34‑1 (MQ=255)
aTCAAAACCGCCCCACCACGGCATGTTAATCCGCtt > 1:2961897/1‑36 (MQ=255)
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ATCCATCAGGCTTGCCACATCCCAAACACGCGGATCAAAACCGCCCCACCACGGCATGTTAATCCGCTT > REL606/1602262‑1602330
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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