Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,545,147 | T→C | 15.2% | S265P (TCA→CCA) | nikA → | nickel transporter subunit |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,545,147 | 0 | T→C | 15.2% | 4.4 ‑3.9 ‑0.2 | 40 | 793 | nikA | nickel transporter subunit |
Reads supporting (aligned to +/- strand): new base (0/6): ref base (19/14): total (19/21) | ||||||||||
Fisher's exact test strand distribution p-value = 2.02e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.74e-01 |
GCTTTAGCCAGAATCCGGCTTACCACACCCAACTGTCACAGCCGATCGAAACCGTGATGCTGGCGCTCAAT > REL606/3545112‑3545182
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gNNTTAGCCAGAATCCGGNTTNNCACACCCAACTGt < 1:7150701/36‑1 (MQ=37)
gCTTTAGCCAGAATCCGGCTTACCACACCCAACTGt > 1:5193166/1‑36 (MQ=255)
gCTTTAGCCAGAATCCGGCTTACCACACCCAACTGt < 1:3271111/36‑1 (MQ=255)
gCTTTAGCCAGAATCCGGCTTACCACACCCAACTGt > 1:304973/1‑36 (MQ=255)
cTTTAGCCAGAATCCGGCTTACCACACCCAACTGTc > 1:2411268/1‑36 (MQ=255)
ttAGCCAGAATCCGGCTTACCACACCCAACTGTcac < 1:3348900/36‑1 (MQ=255)
ttAGCCAGAATCCGGCTTACCACACCCAACTGTcac > 1:1370651/1‑36 (MQ=255)
aGCCAGAATCCGGCTTACCACACCCAACTGTCACAg < 1:2628708/36‑1 (MQ=255)
aGCCAGAATCCGGCTTACCACACCCAACTGTCACAg > 1:630028/1‑36 (MQ=255)
gCCAGAATCCGGCTTACCACACCCAACTGTCACAGc < 1:2870569/36‑1 (MQ=255)
gCCAGAATCCGGCTTACCACACCCAAATGTAACAGc > 1:1902369/1‑36 (MQ=37)
aaaaTCCGGCTTACCACACCCAACTGTCACAGCCGa < 1:6415545/34‑1 (MQ=255)
aacccGGCTTACCACACCCAACGGTCACAGCCGATc < 1:443853/33‑1 (MQ=37)
aaTCCGGCTTACCACACCCAACTGTCACAGCCGATc < 1:7021999/36‑1 (MQ=255)
aaTCCGGCTTACCACACCCAACTGTCACAGCCGATc > 1:3350737/1‑36 (MQ=255)
aaTCCGGCTTACCACACCCAACTGTCACAGCCGATc > 1:4115826/1‑36 (MQ=255)
aTCCGGCTTACCACACCCCACTGTCACAGCCGATcc > 1:3271564/1‑35 (MQ=255)
aTCCGGCTTACCACACCCAACTGTCACACCCTATCg > 1:817251/1‑36 (MQ=37)
cGGCTTACCACACCCAACTGTCACAGCCGATCGaaa > 1:7506947/1‑36 (MQ=255)
cGGCTAACCACACCCAACTGTCACAGCCGATCGaaa < 1:1527478/36‑1 (MQ=255)
ggCTTACCACACCCAACTGTCACAGCCGATCGAAAc > 1:2870231/1‑36 (MQ=255)
ctgaCCACACCAAACGGTCACAGCCGATCGAAACCg < 1:4593894/33‑1 (MQ=25)
ttACCACACCCAAGTGTCACAGCCGATCGAAACCGt > 1:4327240/1‑36 (MQ=255)
ttACCACACAAAACGCGCCCAGCCGATCGAAACCGt < 1:6533983/36‑1 (MQ=9)
taaCCCCACCAAACGGTCCCAGCCGATCGAAACCGt < 1:3495989/34‑1 (MQ=12)
ccccACACCAAACTGCCACAGCCGATCGAAACCGTg < 1:6812603/34‑1 (MQ=25)
acaacacCAAACTGCCCCAGCCGATCGAAACCGTGa < 1:4567355/33‑1 (MQ=19)
aCCACACCCAACTGTCACAGCCGATCGAAACCGTGa > 1:7384680/1‑36 (MQ=255)
aCCACACCCAACTGTCACAGCCGATCGAAACCGCGa > 1:5183872/1‑36 (MQ=255)
ccACCCCAAACTGTCACAGCCGATCGAAACCGTGAt < 1:5245466/36‑1 (MQ=37)
cacaCCAAACTGTCACAGCCGATCGAAACCGTGATg < 1:4580215/36‑1 (MQ=255)
aacacCAAACTGTCACAGCCGATCGAAACCGTGATg < 1:6674165/35‑1 (MQ=255)
aacacCAAACTGTAACAGCCGATCGAAACCGTGATg < 1:199480/35‑1 (MQ=25)
acacCAAACTGCCCCAGCCGATCGAAACCGTGATGc < 1:7020337/36‑1 (MQ=25)
cacCCAACTGTCACAGCCGAGCGAAACCGCGATGCt > 1:7360836/1‑36 (MQ=37)
cacCAAACTGCCCCAGCCGATCGAAACCGTGATGCt < 1:2488884/36‑1 (MQ=25)
cacCAAACGGTCACAGCCGATCGAAACCGTGATGCt < 1:6690016/36‑1 (MQ=37)
acCCAACTGTCACAGCCGATCGAAACCGTGATGCTg > 1:6368903/1‑36 (MQ=255)
acCCAACTGTCACAGCCGATCGAAACCGTGATGCTg > 1:4600926/1‑36 (MQ=255)
cccAACTGTCACAGCCGATCGAAACCGTGATGCTgg > 1:6981352/1‑36 (MQ=255)
aaCTGCCACAGCCGATCGAAACCGTGATGCTGgcgc < 1:6150614/36‑1 (MQ=255)
ccTGCCACAGCCGATCGAAACCGTGATGCTGGCGCt < 1:5090894/35‑1 (MQ=255)
tGTCACAGCCGATCGAAACCGTGATGCTGGCGCTCa > 1:3595423/1‑36 (MQ=255)
gTCACAGCCGATCGAAACCGTGATGCTGGCGCTCaa > 1:7327021/1‑36 (MQ=255)
tCACAGCCGATCGAAACCGTGATGCTGGCGCTCAAt > 1:6511319/1‑36 (MQ=255)
|
GCTTTAGCCAGAATCCGGCTTACCACACCCAACTGTCACAGCCGATCGAAACCGTGATGCTGGCGCTCAAT > REL606/3545112‑3545182
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 13 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|