Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,758,137 | 1 | .→C | 2.6% | 0.2 ‑1.7 0.0 | 76 | coding (943/1263 nt) | ygbK | hypothetical protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/2): ref base (44/30): total (44/32) | ||||||||||
Fisher's exact test strand distribution p-value = 1.74e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGGCAGCAATTCAACAG > REL606/2758102‑2758172
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gCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCa < 1:7369003/36‑1 (MQ=255)
gCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCa < 1:7059614/36‑1 (MQ=255)
gCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCa > 1:1957972/1‑36 (MQ=255)
gCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCa > 1:785828/1‑36 (MQ=255)
ccAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.c > 1:3102893/1‑36 (MQ=255)
ccAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.c < 1:1092964/36‑1 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTT.CCA.cc > 1:2738010/1‑36 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.cc > 1:7879575/1‑36 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.cc > 1:4990204/1‑36 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.cc > 1:6022696/1‑36 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.cc < 1:5476418/36‑1 (MQ=255)
cAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.cc < 1:7269472/36‑1 (MQ=255)
cAGGAAAGTGTACTTGCTCCAATGGTTTTTG.CCaaa > 1:5111974/1‑34 (MQ=38)
aGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCg > 1:3718586/1‑36 (MQ=255)
aGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCg < 1:7796119/36‑1 (MQ=255)
aGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCg < 1:5848084/36‑1 (MQ=255)
ggAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGc > 1:604024/1‑36 (MQ=255)
ggAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGc < 1:6752621/36‑1 (MQ=255)
ggAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGc < 1:7100333/36‑1 (MQ=255)
gAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGcc > 1:6053122/1‑36 (MQ=255)
gAAAGTGTACTTGCTCAACTGGTTCTTG.CCA.CCGcc < 1:5396010/36‑1 (MQ=38)
aaaGTGTCCTTCCCCCACTGGTTTTTG.CCA.CCGCCa < 1:4026809/36‑1 (MQ=25)
aaaGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCa > 1:2777339/1‑36 (MQ=255)
aaaGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCa > 1:5019014/1‑36 (MQ=255)
aaGTGTACTTGCTCCACTGGTTTTTT.CCA.CCGCCAg < 1:5152303/36‑1 (MQ=255)
aaGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAg < 1:6691398/36‑1 (MQ=255)
aaGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAg < 1:3690591/36‑1 (MQ=255)
aGTGTACTTGCTCCACTGGTTTTTT.TCA.ACTCCAGc > 1:4761678/1‑36 (MQ=16)
aGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGc > 1:844401/1‑36 (MQ=255)
aGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGc > 1:7440733/1‑36 (MQ=255)
aGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGc > 1:7329049/1‑36 (MQ=255)
aGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGc > 1:4673006/1‑36 (MQ=255)
aGTGTACTTGCTCCACTGGGTTTTG.CCA.CCGCAAGc > 1:1762984/1‑36 (MQ=37)
gtgtACTTGCTCCACTGTTTTTTC.CCA.CCGCCAGCa < 1:7791472/36‑1 (MQ=37)
tgtACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCAc > 1:2730053/1‑36 (MQ=255)
gtACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACt > 1:7442381/1‑36 (MQ=255)
tccTTGCTCCACTGTTTTTTC.CCC.CCGCCAGCACTg < 1:3427310/34‑1 (MQ=21)
tACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTg > 1:8218231/1‑36 (MQ=255)
tcTTGCTCCCCTGTTTTTTG.CCA.CCGCCAGCACTGa < 1:1740011/35‑1 (MQ=37)
aCTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGa > 1:3538705/1‑36 (MQ=255)
aCTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGa > 1:2804205/1‑36 (MQ=255)
aCTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGa > 1:2698054/1‑36 (MQ=255)
aCTTGCTCCACTGGTTTTTG.CCA.ACGCCAGCGCTGa > 1:694887/1‑36 (MQ=37)
aCTTGCTCCACTGGCTTTTG.CCA.CCGCCACCACTGa > 1:7490813/1‑36 (MQ=37)
ttGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGACg > 1:1974329/1‑36 (MQ=255)
ttGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGACg > 1:5402118/1‑36 (MQ=255)
ttGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGACg > 1:1716668/1‑36 (MQ=255)
tGCTCCACTGGTTTTTT.CCA.CCGCCAGCACTGAAGc > 1:7806353/1‑36 (MQ=37)
cTCAACTGGTTTTTG.CCA.CCGCCAGCACTGACGCAt > 1:5879853/1‑36 (MQ=255)
cccACTGGTTTTTC.CCA.CCGCCAGCACTGACGCAtt < 1:7171687/35‑1 (MQ=255)
ccACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTg > 1:3445610/1‑36 (MQ=255)
ccACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTg > 1:7061200/1‑36 (MQ=255)
ccACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTg > 1:4282943/1‑36 (MQ=255)
ccACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTg > 1:389637/1‑36 (MQ=255)
ccACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTg > 1:5683339/1‑36 (MQ=255)
aCTGTTTTTTC.CCC.CCGCCAGCACTGACGCATTGgc < 1:5125436/36‑1 (MQ=25)
aCTGTTTTTGC.CCA.CCGCCAGCACTGACGCATTGgc < 1:8023002/36‑1 (MQ=21)
aCTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgc > 1:4836144/1‑36 (MQ=255)
aCTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgc > 1:2787258/1‑36 (MQ=255)
aCTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgc > 1:3377321/1‑36 (MQ=255)
cTGTTTTTTC.CCA.CCGCCAGCACTGACGCATTGgca < 1:3329908/36‑1 (MQ=37)
cTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgca > 1:3695396/1‑36 (MQ=255)
cTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgca > 1:3022067/1‑36 (MQ=255)
cTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgca > 1:1722114/1‑36 (MQ=255)
tGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGgcag > 1:3531549/1‑36 (MQ=255)
cggTTTTTGCCCA.CCGCCAGCACTGACGCATTGgca < 1:4282758/35‑1 (MQ=25)
aggTTTTTC.CCCCCCGCCAGCACTGACGCATTGgca < 1:3436260/35‑1 (MQ=16)
gttttttG.CCA.CCGCCAGCACTGACGCATTGgcagc < 1:8023639/34‑1 (MQ=255)
gttttttG.CAA.CCGCCAGCACTGACGCATTGgcagc < 1:199102/34‑1 (MQ=37)
ggTTTTTG.CGA.CCGCCAGCACTGACGCATTGgaagc > 1:458462/1‑36 (MQ=37)
ggTTTTTC.CCCCCCGCCAGCACTGACGCATTGgcag < 1:1379711/36‑1 (MQ=19)
ttttttC.CCA.CCGCCAGCACTGACGCATTGgcagca < 1:2500505/35‑1 (MQ=255)
ttttttC.CCA.CCGCCAGCACTGACGCATTGgcagca < 1:1600736/35‑1 (MQ=255)
tttttgG.CCA.CCGCCAGCACTGACGCATTGgcagca < 1:973383/35‑1 (MQ=255)
gTTTTTG.CCA.CCGCCAGCACTGACGCATTGgcagca > 1:3135944/1‑36 (MQ=255)
tttttG.CCA.CCGCCAGCACTGACGCATTGGCAGCaa > 1:2140398/1‑36 (MQ=255)
tttttG.CCA.CCGCCAGCACTGACGCATTGGCAGCaa > 1:7724962/1‑36 (MQ=255)
ttttC.CCA.CCGCCAGCACTGACGCATTGGCAGCAAt < 1:7563098/36‑1 (MQ=255)
tttC.CCA.CCGCCAGCACTGACGCATTGGCAGCAAtt < 1:8327417/36‑1 (MQ=255)
ttG.CCA.CCGCCAGCACTGACGCATTGGCAGCAATTc > 1:1123633/1‑36 (MQ=255)
tccccA.CCGCCAGCACTGACGCATTGGCAGCAATTc < 1:4315405/33‑1 (MQ=255)
tccccA.CCGCCAGCACTGACGCATTGGCAGCAATTc < 1:5628387/33‑1 (MQ=255)
g.CCA.CCGCCAGCACTGACGCATTGGCAGCAATTCaa > 1:8273832/1‑36 (MQ=255)
g.CCA.CCGCCAGCACTGACGCATTGGCAGCAATTCaa > 1:4701631/1‑36 (MQ=255)
cccA.CCGCCAGCACTGACGCATTGGCAGCAATTCaa < 1:296269/35‑1 (MQ=255)
ccA.CCGCCAGCACTGACGCATTGGCAGCAATTCAAc < 1:7264802/36‑1 (MQ=255)
ccA.CCGCCAGCACTGACGCATTGGCAGCAATTCAAc > 1:3509921/1‑36 (MQ=255)
cA.CCGCCAGCACTGACGCATTGGCAGCAATTCAACa < 1:7954192/36‑1 (MQ=255)
cA.CCGCCAGCACTGACGCATTGGCAGCAATTCAACa < 1:67406/36‑1 (MQ=255)
a.CCGCCAGCACTGACGCATTGGCAGCAATTCAACAg > 1:2774849/1‑36 (MQ=255)
a.CCGCCAGCACTGACGCATTGGCAGCAATTCAACAg > 1:3803887/1‑36 (MQ=255)
a.CCGCCAGCACTGACGCATTGGCAGCAATTCAACAg > 1:1148192/1‑36 (MQ=255)
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GCCAGGAAAGTGTACTTGCTCCACTGGTTTTTG.CCA.CCGCCAGCACTGACGCATTGGCAGCAATTCAACAG > REL606/2758102‑2758172
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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