New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 78925744 (0.960)6 (0.130) 4/56 NT 16.7% intergenic (‑235/+241) ECB_00726/ECB_00727 integrase/phage related protein
?REL606 2994085 = 16 (0.280)coding (731/2136 nt) speC ornithine decarboxylase, constitutive

TCTTCATTAAAACAGTGCGCATCAATACCGCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAGATAG  >  REL606/2994052‑2994120
                                 |                                   
tctTCATTAAAACAGTGCGCATCAATACCGCCAATg                                   >  1:4165071/1‑36 (MQ=255)
  ttCATTAAAACAGTGCGCATCAATACCGCCAATGaa                                 >  1:6960110/1‑36 (MQ=255)
   tCATTAAAACAGTGCGCATCAATACCGCCAATGaaa                                >  1:4743102/1‑36 (MQ=255)
   tCATTAAAACAGTGCGCATCAATACCGCCAATGaaa                                >  1:2756377/1‑36 (MQ=255)
    cATTAAAACAGTGCGCATCAATACCGCCAATGAAAc                               >  1:4187371/1‑36 (MQ=255)
     aTTAAAACAGTGCGCATCAATACCGTCAATGACAcc                              >  1:6574905/1‑36 (MQ=25)
     aTTAAAACAGTGCGCATCAATACCGCCAATGAAAcc                              >  1:769118/1‑36 (MQ=255)
     aTTAAAACAGTGCGCATCAATACAACCAATGAAAcc                              >  1:3966408/1‑36 (MQ=25)
          aaCAGTGCGCATCAATACCGCCAATGAAACCAAACg                         >  1:727179/1‑36 (MQ=255)
            cAGTGCGCATCAATACCGCCAATGAAACCAAACggg                       >  1:5073163/1‑36 (MQ=255)
                gcgcATCAATACCGCCAATGAAACCAAACGGGTTAc                   >  1:712853/1‑36 (MQ=255)
                gcgcATCAATACCGCCAATGAAACCAAACGGGTTAc                   >  1:5590962/1‑36 (MQ=255)
                gcaaaaaaaaaccgccaATGAAACCAAACGGGTTAc                   <  1:167548‑M2/19‑1 (MQ=255)
                 cgcATCAATACCGCCAATGAAACCAAACGGGTTACg                  >  1:1661873/1‑36 (MQ=255)
                 caaaaaaaaaccgccaATGAAACCAAACGGGTTACg                  <  1:2100222‑M2/20‑1 (MQ=255)
                  gcATCAATACCGCCAATGAAACCAAACGGGTTACGt                 >  1:7320047/1‑36 (MQ=255)
                  gcATCAATACCGCCAATGAAACCAAACGGGTTACGt                 >  1:5919434/1‑36 (MQ=255)
                   aaaaaaaaccgccaATGAAACCAAACGGGTTACGTg                <  1:6271925‑M2/22‑1 (MQ=255)
                    aaaaaTACCGCCAATGAAACCAAACGGGTTACGTGa               <  1:6104807/33‑1 (MQ=255)
                     aaaaaaccgccaATGAAACCAAACGGGTTACGTGaa              <  1:3371292‑M2/24‑1 (MQ=255)
                     aaaaaaccgccaATGAAACCAAACGGGTTACGTGaa              <  1:5698475‑M2/24‑1 (MQ=255)
                      cAATACCGCCAATGAAACCAAACGGGTTACGTGAAg             >  1:605657/1‑36 (MQ=255)
                       aaTACCGCCAATGAAACCAAACGGGTTACGTGAAGc            >  1:2709621/1‑36 (MQ=255)
                       aaTACCGCCAATGAAACCAAACGGGTTACGTGAAGc            >  1:2142237/1‑36 (MQ=255)
                         aaccgccaATGAAACCAAACGGGTTACGTGAAGCtt          <  1:7406‑M2/28‑1 (MQ=255)
                          accgccaATGAAACCAAACGGGTTACGTGAAGCTTc         <  1:5041275‑M2/29‑1 (MQ=255)
                          accgccaATGAAACCAAACGGGTTACGTGAAGCTTc         <  1:2368453‑M2/29‑1 (MQ=255)
                          accgccaATGAAACCAAACGGGTTACGTGAAGCTTc         >  1:7368513‑M2/8‑36 (MQ=255)
                          aCCGCCAATGAAACCAAACGGGTTAAGTGAAGCtgc         >  1:6126148/1‑34 (MQ=38)
                           ccgccaATGAAACCAAACGGGTTACGTTAAGCTTcc        <  1:3915342‑M2/30‑1 (MQ=255)
                           ccgccaATGAAACCAAACGGGTTACGTGAAGCTTcc        >  1:6355264‑M2/7‑36 (MQ=255)
                           ccgccaATGAAACCAAACGGGTTACGTGAAGCTTcc        <  1:4819520‑M2/30‑1 (MQ=255)
                            cgccaATGAAACCAAACGGGTTACGTGAAGCTTCCa       <  1:6025008‑M2/31‑1 (MQ=255)
                             gccaATGAAACCAAACGGGTTACGTGAAGCTTCCAg      <  1:4000475‑M2/32‑1 (MQ=255)
                             gccaATGAAACCAAACGGGTTACGTGAAGCTTCCAg      <  1:3616554‑M2/32‑1 (MQ=255)
                              ccaATGAAACCAAACGGGTTACGTGAAGCTTCCAGa     <  1:4586797‑M2/33‑1 (MQ=255)
                               caATGAAACCAAACGGGTTACGTGAAGCTTCCAGAt    >  1:4352566‑M2/3‑36 (MQ=255)
                               cAATGAAACCAAACAGGTTACGTGAATCTTCCAGAt    <  1:5260625/36‑1 (MQ=37)
                                 aTGAAACCAAACGGGTTACGTGAAGCTTCCAGATAg  <  1:6271448/36‑1 (MQ=255)
                                 aTGAAACCAAACGGGTTACGTGAAGCTTCCAGATAg  <  1:191103/36‑1 (MQ=255)
                                 |                                   
TCTTCATTAAAACAGTGCGCATCAATACCGCCAATGAAACCAAACGGGTTACGTGAAGCTTCCAGATAG  >  REL606/2994052‑2994120

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG