Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 77 [1] [0] 63 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)57 (1.010) 36/64 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 0 (0.000)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG...................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  REL606/3901931‑3901966
                                                                         
   GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG                                    <  1:1624707/36‑1 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   <  1:4833706/36‑1 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   >  1:4710063/1‑36 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   <  1:3538333/36‑1 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   >  1:7136559/1‑36 (MQ=1)
    TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT                                   >  1:7705569/1‑36 (MQ=1)
     GTTTAACTGTCCAACTTTTTGGGGTCAGTACATGTT                                  >  1:3311491/1‑36 (MQ=38)
     GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTa                                  >  1:4167577/1‑35 (MQ=1)
     GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT                                  <  1:2609794/36‑1 (MQ=1)
     GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT                                  >  1:4482414/1‑36 (MQ=1)
     GTTTAACTGTCCAACGTTTTGGGGTCAGTACAGGTT                                  <  1:4319256/36‑1 (MQ=0)
      TTTAACTGTCCAACTTTTTGGGGTTAGTACAGGTTG                                 >  1:8226643/1‑36 (MQ=0)
      TTTAACTGTCCAACTTTTTGGGGTCAGTACATGTTG                                 >  1:5908830/1‑36 (MQ=38)
      TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGgag                                 <  1:5584253/36‑4 (MQ=0)
       TTAACTGTCCAACTTTTTGGGGTCAGTACATGTTGa                                <  1:5231184/36‑2 (MQ=40)
       TTAACTGTCCAACTTTTTGGGGTCAGTACATGTTGa                                <  1:1624369/36‑2 (MQ=40)
       TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC                                <  1:7670961/36‑1 (MQ=1)
       TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC                                >  1:5407903/1‑36 (MQ=1)
       TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC                                >  1:2825879/1‑36 (MQ=1)
       TTAACTGTCCAACTTTTTGGGGTCAGTACAGGGTGC                                <  1:7786761/36‑1 (MQ=0)
        TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC                               >  1:3778376/1‑36 (MQ=1)
        TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC                               <  1:2825816/36‑1 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              >  1:6553673/1‑36 (MQ=1)
         AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC                              <  1:6680120/36‑1 (MQ=1)
          ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA                             >  1:5874836/1‑36 (MQ=1)
          ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA                             <  1:76155/36‑1 (MQ=1)
           CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG                            >  1:967041/1‑36 (MQ=1)
            TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG                           <  1:3430011/36‑1 (MQ=1)
            TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG                           <  1:8477120/36‑1 (MQ=1)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                          <  1:7815033/36‑1 (MQ=1)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                          <  1:5094003/36‑1 (MQ=1)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                          <  1:4755067/36‑1 (MQ=1)
             GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT                          <  1:2605940/36‑1 (MQ=1)
              TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG                         <  1:1222132/36‑1 (MQ=32)
              TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG                         >  1:3508877/1‑36 (MQ=32)
               CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA                        <  1:5912454/36‑1 (MQ=35)
                CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC                       >  1:5767882/1‑36 (MQ=38)
                  ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA                     >  1:1083409/1‑36 (MQ=38)
                   CTTTTTGTGGTCAGTACAGGTTGCCCAGGTGACCAG                    <  1:2153779/36‑1 (MQ=255)
                   CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG                    <  1:3431494/36‑1 (MQ=38)
                   CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG                    >  1:3430241/1‑36 (MQ=38)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                   <  1:5212371/36‑1 (MQ=40)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                   <  1:4565127/36‑1 (MQ=40)
                    TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC                   <  1:5555194/36‑1 (MQ=40)
                     TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA                  <  1:7798038/36‑1 (MQ=255)
                     TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA                  >  1:2798417/1‑36 (MQ=255)
                     TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA                  <  1:2804682/36‑1 (MQ=255)
                      TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC                 <  1:1104239/36‑1 (MQ=255)
                        TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC               <  1:5712223/36‑1 (MQ=38)
                         GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC              <  1:741927/36‑1 (MQ=38)
                          GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG             <  1:7969831/36‑1 (MQ=38)
                           GGTCAGTACAGGTTGCCCAGGTGACCAGCTCGCCGC            <  1:4317586/36‑1 (MQ=255)
                            GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC           <  1:3281441/36‑1 (MQ=38)
                              CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA         >  1:7714081/1‑36 (MQ=38)
                               AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG        >  1:2868249/1‑36 (MQ=38)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     <  1:7358151/36‑1 (MQ=32)
                                  ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC     <  1:1787008/36‑1 (MQ=32)
                                                                         
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG...................................  >  REL606/3894960‑3894996
...................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG  >  REL606/3901931‑3901966

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG