Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 157,994 | G→T | 22.7% | Q93K (CAA→AAA) | htrE ← | predicted outer membrane usher protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 157,994 | 0 | G→T | 22.7% | 5.7 ‑4.1 0.0 | 26 | 277 | htrE | predicted outer membrane usher protein |
Reads supporting (aligned to +/- strand): new base (6/0): ref base (8/12): total (14/12) | ||||||||||
Fisher's exact test strand distribution p-value = 1.71e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAACTGCAATAAATTCTTAAGTGTGATACAGGCTTGTGCGTTTTTTTTTCCTTCAATTTCAATAAATGTA > REL606/157959‑158028
|
aaaCTGCAATAAATTCTTAAGTGTGATACAGGCTtg < 1:5710862/36‑1 (MQ=255)
aaCTGCAATAAATTCTTAAGTGTGATACAGGCTtgt < 1:5968288/36‑1 (MQ=255)
aCTGCAATAAATTCTTAAGTGTGATACAGGCTtgtg < 1:4462818/36‑1 (MQ=255)
gCAATAAATTCTTAATTGTGATACAGGCTTTTGCGt > 1:685664/1‑36 (MQ=37)
gCAATAAATTCTTAAGTGTGATACAGGCTTGTGCGt < 1:4652015/36‑1 (MQ=255)
cAATAAATTCTTAAGTGTGATACAGGCTTTTTCGtt > 1:7223230/1‑36 (MQ=37)
aaTAAATTCTTAAGTGTGATACAGGCTTTTTCGttt > 1:7168403/1‑36 (MQ=37)
aaTAAATTCTTAAGTGTGATACAGGCTTTTTCGttt > 1:3410256/1‑36 (MQ=37)
aaaTTCTTAAGTGTGATACAGGCTTGTGCGtttttt > 1:6934877/1‑36 (MQ=255)
cTTAAGTGTGATACAGGCTTTTTTGttttttttttt > 1:4872139/1‑34 (MQ=21)
cTTAAGTGTGATACAGGCTTTTGGGttttttttttt > 1:2357676/1‑34 (MQ=37)
ttAAGTGTGATACAGGCTTGTTTGTTTTTTTTTctt > 1:6899796/1‑34 (MQ=37)
ttAAGTGTGATACAGGCTTGTGCGTTTTTTTTTCCt < 1:5813884/36‑1 (MQ=255)
tAAGTGTGATACAGGCTTGTGCGTTTTTTTTTCCtt < 1:1601672/36‑1 (MQ=255)
tAAGTGTGATACAGGCTTGTGCGTTTTTTTTTCCtt < 1:2061749/36‑1 (MQ=255)
aaGTGTGATACAGGCTTGTGCGTTTTTTTTTCCttc < 1:3758263/36‑1 (MQ=255)
gtgtGATACAGGCTTGTGCGTTTTTTTTTCCttcaa < 1:1546814/36‑1 (MQ=255)
gtgATACAGGCTTGTGCGTTTTTTTTTTTtttaatt > 1:6646740/1‑36 (MQ=37)
gtgATACAGGCTTGTGCGTTTTTTTTTTTttcaatt > 1:2793193/1‑36 (MQ=37)
gtgATACAGGCTTGTGCGTTTTTTTTTCCttcaatt < 1:5242120/36‑1 (MQ=255)
gtgATACAGGCTTGTGCGTTTTTTTTTCCttcaatt < 1:290363/36‑1 (MQ=255)
tgATACAGGCTTGTGCGTTTTTTTTTCCttcaattt < 1:7025970/36‑1 (MQ=255)
aTACAGGCTTGTGCGTTTTTTTTTTCttcaatttca > 1:435459/1‑36 (MQ=255)
aTACAGGCTTGTGCGTTTTTTTTTCCttcaatttca < 1:5271142/36‑1 (MQ=255)
aTACAGGCTTGTGCGTTTTTTTTTCCttcaatttca < 1:5687276/36‑1 (MQ=255)
aTACAGGCTTGTGCGTTTTTTTTTCCttcaatttca < 1:6250996/36‑1 (MQ=255)
cTTGTGCGTTTTTTTTTCCTTCAATTTCAATAAATg > 1:266587/1‑36 (MQ=255)
ttGTGCGTTTTTTTTTCCTTCAATTTCAATAAATGt > 1:4095229/1‑36 (MQ=255)
ttGTGCGTTTTTTTTTCCTTCAATTTCAATAAATGt > 1:6008918/1‑36 (MQ=255)
tgtgCGTTTTTTTTTCCTTCAATTTCAATAAATGTa < 1:3216218/36‑1 (MQ=255)
|
AAACTGCAATAAATTCTTAAGTGTGATACAGGCTTGTGCGTTTTTTTTTCCTTCAATTTCAATAAATGTA > REL606/157959‑158028
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
|