Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,417,696 | C→A | 17.3% | intergenic (‑130/‑286) | emrK ← / → evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,417,696 | 0 | C→A | 17.3% | 2.4 ‑3.9 0.0 | 43 | intergenic (‑130/‑286) | emrK/evgA | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS |
Reads supporting (aligned to +/- strand): new base (1/8): ref base (20/13): total (22/21) | ||||||||||
Fisher's exact test strand distribution p-value = 2.05e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTT > REL606/2417661‑2417730
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cccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGc < 1:1622347/36‑1 (MQ=255)
ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa < 1:1119911/36‑1 (MQ=255)
ccAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCa > 1:2105789/1‑36 (MQ=255)
cAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaa < 1:2539507/36‑1 (MQ=255)
cAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaa < 1:642189/36‑1 (MQ=255)
aGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaaa > 1:5079918/1‑36 (MQ=255)
aGGAACGTTGGAGGCCTAATTTAAATGAGGTGCaaa < 1:1890088/36‑1 (MQ=255)
ggAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaa < 1:4451904/36‑1 (MQ=255)
ggAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaa > 1:2050530/1‑36 (MQ=255)
ggAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaa > 1:2961002/1‑36 (MQ=255)
gAACGTTGGAGGCCTAATTTAAATGAGGTGCaaaaa < 1:5677536/36‑1 (MQ=255)
aaCGTTGGAGGCCTAATTTAAATGAGGTGCaaaaaa < 1:2353005/36‑1 (MQ=255)
cGTTGGAGGCCTAATTTAAATGAGGTGCaaaaaaaa < 1:5241325/36‑1 (MQ=255)
gTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaac < 1:2380866/36‑1 (MQ=255)
gTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaac > 1:2694271/1‑36 (MQ=255)
tGGAGGCCTAATTTAAATGAGGTGCAAAAAAaacaa > 1:5626442/1‑36 (MQ=255)
tGGAGGCCTAATTTAAATGAGGTGCAAAAAAaacaa > 1:3513509/1‑36 (MQ=255)
ggAGGCCTAATTTAAATGAGGTGTAAAAAAaacaac > 1:2755648/1‑36 (MQ=255)
ggAGGCCTAATTTAAATGAGGTGCAAAAAAaacaaa > 1:4522012/1‑35 (MQ=255)
aGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag < 1:1008125/36‑1 (MQ=255)
aGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag > 1:5290288/1‑36 (MQ=255)
gCCTAATTTAAATGAGGTGCAAAAAAAACAACagag < 1:3335298/36‑1 (MQ=255)
ttAATTAAAAGGAGGGAAAAAAAAAACAACAGAGGa < 1:5340143/35‑1 (MQ=12)
tAATTTAAATGAGGTGCAAAAAAAACAACAGAGGAc > 1:4540312/1‑36 (MQ=255)
tAATTTAAATGAGGTGC.AAAAAAACAACAGAGGACt > 1:2283357/1‑36 (MQ=37)
tAATTTAAATGAGGTGAAAAAAAAACAACAGAGGAc > 1:1461720/1‑36 (MQ=255)
tAATTTAAATGAGGTGAAAAAAAAACAACAGAGGAc < 1:2521654/36‑1 (MQ=255)
aaTTTAAATGAGGTGCAAAAAAAACTACAGAGGACt > 1:5850106/1‑36 (MQ=255)
aaTTTAAATGAGGTGAAAAAAAAACAACAGAGGACt < 1:5507202/36‑1 (MQ=255)
aTTTAAATGAGGTGCAAAAAAAACAACAGAGGACTa > 1:4800458/1‑36 (MQ=255)
aTTTAAATGAGGTGCAAAAAAAACAACAGAGGACTa < 1:4894087/36‑1 (MQ=255)
tttAAATGAGGTGAAAAAAAAACAACAGAGGACTaa < 1:1841224/36‑1 (MQ=255)
aaTGAGGTGCAAAAAAAACAACAGAGGACTAAACCg > 1:4361919/1‑36 (MQ=255)
aTGAGGTGCAAAAAAAACAACAGAGGACTAAACCgg > 1:4186637/1‑35 (MQ=255)
aTGAGGTGCAAAAAAAACAACAGAGGACTAAACCGt > 1:119428/1‑36 (MQ=255)
gAGGTGCAAAAAAAACAACAGAGGACTAAACCGTgg > 1:5596780/1‑36 (MQ=255)
gAGGTGAAAAAAAAACAACAGAGGACTAAACCGTgg < 1:1669997/36‑1 (MQ=255)
aGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGc > 1:4113315/1‑36 (MQ=255)
aGGTGAAAAAAAAACAACAGAGGACTAAACCGTGGc < 1:120282/36‑1 (MQ=255)
ggTGCAAAAAAAACAACAGAGGACTAAACCGTGGCt > 1:387667/1‑36 (MQ=255)
ggTGAAAAAAAAACAACAGAGGTCTAAACCGTGGCt < 1:1736360/36‑1 (MQ=37)
ggTGAAAAAAAAACAACAGAGGACTAAACCGTGGCt < 1:3507770/36‑1 (MQ=255)
tGCAAAAAAAACACCAGCGGACTAAACCGTGGCttt < 1:5236218/36‑1 (MQ=37)
gCAAAAAAAACAACAGAGGACTAAACCGTGGCtttt > 1:554973/1‑36 (MQ=255)
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CCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTT > REL606/2417661‑2417730
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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