Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,735,500 | 0 | A→G | 13.9% | 8.5 ‑15.6 0.0 | 97 | 1117 | ascF | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (15/0): ref base (24/58): total (39/58) | ||||||||||
Fisher's exact test strand distribution p-value = 1.62e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGCTGGCTGCGGCGGCATCAGCCATTATGGCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCGATCCGC > REL606/2735465‑2735535
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cgcTGGCTGCGGCGGCATCAGCCATTATGGCGGGGa < 1:3854254/36‑1 (MQ=255)
gctggctgCGGCGGCATCAGCCATTATGGCGGGGAt < 1:3994968/36‑1 (MQ=255)
ctggctgCGGCGGCATCAGCCATTATGGCGGGGGtt > 1:4645913/1‑36 (MQ=255)
ctggctgCGGCGGCATCAGCCATTATGGCGGGGAtt < 1:1422639/36‑1 (MQ=255)
ctggctgCGGCGGCATCAGCCATTATGGCGGGGAtt < 1:6561902/36‑1 (MQ=255)
tggctgCGGCGGCATCAGCCATTATGGCGGGGGttt > 1:6972481/1‑36 (MQ=255)
tggctgCGGCGGAATCAGCCGTTATGGCGGGGAttt < 1:26112/36‑1 (MQ=37)
ggctgCGGCGGCATCAGCCATTATGGCGGGGATTTc < 1:280013/36‑1 (MQ=255)
ggcggCGGCGGCATCAGCCATTATGGCGGGGATTTc < 1:3841456/36‑1 (MQ=255)
gctgCGGCGGCATCAGCCATTATGGCGGGGGttttc > 1:6932088/1‑34 (MQ=37)
gctgCGGCGGCATCAGCCATTATGGCGGGGATTTcc < 1:4097395/36‑1 (MQ=255)
gctgCGGCGGCATCAGCCATTATGGCGGGGATTTcc < 1:4953612/36‑1 (MQ=255)
gctgCGGCGGCATCAGCCATTATGGCGGGGATTTcc < 1:4436665/36‑1 (MQ=255)
gctgCGGCGGCATCAGCCATTATGGCGGGGATTTcc < 1:1617342/36‑1 (MQ=255)
gctgCGGCGGCATCAGCCATTATGGCGGGGATTTcc < 1:3492313/36‑1 (MQ=255)
gcggcggcgGCATCAGCTGTTATGGCGGGGATTTcc < 1:4744159/33‑1 (MQ=21)
ctgCGGCGGCATCCGCCATTATGGCGGGGGttttcc > 1:161239/1‑33 (MQ=25)
gcggcgGCATCAGCCATTATGGCGGGGGTTTTCGaa > 1:7937747/1‑36 (MQ=37)
gcggcgGCATCAGCCATTATGGCGGGGATTTCCGaa < 1:1825656/36‑1 (MQ=255)
gggcggcATCAGCCATTATGGCGGGGATTTCCGAAc < 1:7608883/35‑1 (MQ=255)
cggcggCATCAGCCATTATGGCGGGGATTTCCGAAc < 1:454811/36‑1 (MQ=255)
cggcggCATCAGCCATTATGGCGGGGATTTCCGAAc < 1:6756327/36‑1 (MQ=255)
cggcggCACCAGCCATTATGGCGGGGATTTCCGAAc < 1:8269614/36‑1 (MQ=255)
ggcggcATCAGCCATTATGGCGGGGGTNTCCGaaac > 1:8360727/1‑34 (MQ=37)
ggcggcATCAGCCATTATGGCGGGGATTTCCGAAcc < 1:1620356/36‑1 (MQ=255)
ggcggcATCAGCCATTATGGCGGGGATTTCCGAAcc < 1:2769911/36‑1 (MQ=255)
gcgtcATCAGCCATTATGGCGGGGATTTCCGAACCg < 1:1389456/36‑1 (MQ=255)
gcggcATCAGCCATTATGGCGGGGGTTTTCGAACCg > 1:2728874/1‑36 (MQ=37)
gcggcATCAGCCATTATGGCGGGGATTTCCGAACCg < 1:240679/36‑1 (MQ=255)
ggcATCAGCCATTATGGCGGGGGTTTTCTGACCGGc > 1:2426755/1‑36 (MQ=16)
ggcATCAGCCATTATGGCGGGGGTTTTCGAAcccgg > 1:6924192/1‑33 (MQ=25)
ggcATCAGCCATTATGGCGGGGGTTTTCGAACCGGc > 1:6071331/1‑36 (MQ=37)
ggcATCAGCCATTATGGCGGGGATTTTCGAACCggg > 1:2053744/1‑35 (MQ=255)
ggcATCAGCCATTATGGCGGGGATTTCCGCACCGGc > 1:7519439/1‑36 (MQ=255)
ggcATCAGCCATTATGGCGGGGATTTCCGAACCGGc < 1:1190886/36‑1 (MQ=255)
ggcATCAGCCATTATGGCGGGGATTTCCGAACCGGc < 1:1524597/36‑1 (MQ=255)
ggcATCAGCCATTATGGCGGGGATTTCCGAACCGGc > 1:8427725/1‑36 (MQ=255)
cATCAGCCATTATGGCGGGGATTTCCGAACCGGCGt < 1:3639249/36‑1 (MQ=255)
cATCAGCCATTATGGCGGGGATTTCCGAACCGGCGt < 1:1412332/36‑1 (MQ=255)
cATCAGCCATTATGGCGGGGATTTCCGAACCGGCGt < 1:8075231/36‑1 (MQ=255)
aTCAGCCATTATGGCGGGGGTTTTCGAACCCGCGtt > 1:6304714/1‑36 (MQ=25)
aTCAGCCATTATGGCGGGGGTTTCCCAACCCGCggt > 1:2693246/1‑34 (MQ=21)
aTCAGCCATTATGGCGGGGATTTCCGAACCGGCGtt < 1:1932971/36‑1 (MQ=255)
tCAGCCATTATGGCGGGGATTTCCGAAACGGCGTta > 1:8308553/1‑36 (MQ=255)
cAGCCATTATGGCGGGGGTTTTCGCACCGGCGTtat > 1:1972302/1‑36 (MQ=25)
cAGCCATTATGGCGGGGATTTCCGAACCGGCGTtat < 1:1337459/36‑1 (MQ=255)
cAGCCATTATGGCGGGGATTTCCGAACCGGCGTtat < 1:6636527/36‑1 (MQ=255)
cAGCCATTATGGCGGGGATTTCCGAACCGGCGTtat < 1:4756686/36‑1 (MQ=255)
aGCCATTATGGCGGGGATTTTCCAAACGTCGGtata > 1:6130782/1‑36 (MQ=9)
aGCCATTATGGCGGGGATTTCCGAACCGGCGTttta > 1:7087091/1‑36 (MQ=255)
gCCATTATGGCGGGGATTTCCGAACCGGCGTTATAc < 1:5892332/36‑1 (MQ=255)
gCCATTATGGCGGGGATTTCCGAACCGGCGTTATAc < 1:1353971/36‑1 (MQ=255)
gCCATTATGGCGGGGATTTCCGAACCGGCGTTATAc < 1:7607930/36‑1 (MQ=255)
ccATTATGGCGGGGGTTTCCCAACCGGCGTTATACg > 1:4386133/1‑36 (MQ=37)
ccATTATGGCGGGGATTTTCGAACCGGCGTTATACg > 1:8045653/1‑36 (MQ=255)
ccATTATGGCGGGGATTTCCGCACCGGCGTTATACg > 1:4207349/1‑36 (MQ=255)
ccATTATGGCGGGGATTTCCGAACCGGCGTTATACg < 1:7691772/36‑1 (MQ=255)
ccATTATGGCGGGGATTTCCGAACCGGCGTTATACg < 1:4126886/36‑1 (MQ=255)
cATTATGGCGGGGGTTTTCGAAACGGCGTTATAAgg > 1:2307975/1‑36 (MQ=19)
cATTATGGCGGGGATTTCCGAACCGGCGTTATACgg < 1:6199744/36‑1 (MQ=255)
cATTATGGCGGGGATTTCCGAACCGGCGTTATACgg > 1:1912904/1‑36 (MQ=255)
aTTATGGCGGGGATTTCCGAACCGGCGTTATACGGc < 1:4091898/36‑1 (MQ=255)
aTTATGGCGGGGATTTCCGAACCGGCGTTATACGGc < 1:7015184/36‑1 (MQ=255)
tATTGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:7574630/36‑1 (MQ=255)
tATGGCGGGGATTTCCGACCCGGCGTTATACGGCGt < 1:1701060/36‑1 (MQ=255)
tATGGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:8164406/36‑1 (MQ=255)
tATGGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:841012/36‑1 (MQ=255)
tATGGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:2971915/36‑1 (MQ=255)
tATGGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:2439200/36‑1 (MQ=255)
tATGGCGGGGATTTCCGAACCGGCGTTATACGGCGt < 1:2442582/36‑1 (MQ=255)
aTGGCGGGGATTTCCGAACCGGCGTTATACGGCGTg < 1:7315468/36‑1 (MQ=255)
tGGCGGGGATTTCCGAACCGGCGTTATACGGCGTgg > 1:6106698/1‑36 (MQ=255)
tGGCGGGGATTTCCGAACCGGCGTTATACGGCGTgg > 1:631537/1‑36 (MQ=255)
ggCGGGGATTTCCGAACCGGCGTTATACGGCGTGGc > 1:6410010/1‑36 (MQ=255)
ggCGGGGATTTCCGAACCGGCGTTATACGGCGTGGc > 1:3882467/1‑36 (MQ=255)
gCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCg < 1:6802005/36‑1 (MQ=255)
gCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCg > 1:6664886/1‑36 (MQ=255)
gCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCg > 1:785758/1‑36 (MQ=255)
gCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCg < 1:5328226/36‑1 (MQ=255)
gCGGGGATTGCCGAACCGGCGGTATACGGCGTggag > 1:614477/1‑34 (MQ=25)
cGGGGATTTCCGAACCGGCGTTATACGGCGTGGCGa < 1:4366864/36‑1 (MQ=255)
cGGGGATTTCCGAACCGGCGTTATACGGCGTGGCGa < 1:7140515/36‑1 (MQ=255)
cGGGGATTTCCGAACCGGCGTTATACGGCGTGGCGa < 1:5226966/36‑1 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt > 1:7935644/1‑36 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt < 1:923429/36‑1 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt < 1:7075741/36‑1 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt > 1:3418686/1‑36 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt > 1:266566/1‑36 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt > 1:1602894/1‑36 (MQ=255)
ggggATTTCCGAACCGGCGTTATACGGCGTGGCGAt > 1:1023529/1‑36 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc < 1:645356/36‑1 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc < 1:6088132/36‑1 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc > 1:5730525/1‑36 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc < 1:5568215/36‑1 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc < 1:49175/36‑1 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc > 1:2040756/1‑36 (MQ=255)
gggATTTCCGAACCGGCGTTATACGGCGTGGCGATc < 1:1458988/36‑1 (MQ=255)
gggATTTCCGAACAGGCGTTATACGGCGTTGCGCTc > 1:487404/1‑36 (MQ=25)
aTTTCCGAACCGGCGTTATACGGCGTGGCGATCCGc < 1:5478923/36‑1 (MQ=255)
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CGCTGGCTGCGGCGGCATCAGCCATTATGGCGGGGATTTCCGAACCGGCGTTATACGGCGTGGCGATCCGC > REL606/2735465‑2735535
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 19 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
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