Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,014,308 | G→T | 17.7% | E297* (GAA→TAA) | ECB_02815 → | Capsule polysaccharide export inner‑membrane protein kpsE |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,014,308 | 0 | G→T | 17.7% | 7.3 ‑3.5 0.0 | 36 | 889 | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE |
Reads supporting (aligned to +/- strand): new base (6/1): ref base (10/19): total (16/20) | ||||||||||
Fisher's exact test strand distribution p-value = 2.98e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAACACCGAG > REL606/3014273‑3014343
|
aGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTg < 1:1023590/36‑1 (MQ=255)
aGGGTGACAAGATAAACCGTATGGCGG.TGGATTTTg < 1:6436881/36‑1 (MQ=255)
gggTGACAAGCTAAACCGTATGGCGG.TGGATTTTga < 1:2268705/36‑1 (MQ=255)
gACAAGCTAAACCGTATGGCGG.TGGATTTTgaagaa < 1:3047032/36‑1 (MQ=255)
cAAGCTAAACCGTATGGCGGCTGGTTTTTGTAAaaa > 1:5523242/1‑36 (MQ=12)
cAAGCTAAACCGTATGGCGG.GGGGTTTTTTAGaaaa > 1:6437428/1‑35 (MQ=19)
aaaGCTAAACCGTATGGCGG.TGGATTTTTAAGaaat < 1:3167832/35‑1 (MQ=255)
aaGCTAAACCGTATGGCGG.TGGATTTTGAAGaaatc < 1:5646143/36‑1 (MQ=255)
aGCTAAACCGTATGGCGG.AGGGTTTTTAAAaaaaaa > 1:893063/1‑33 (MQ=16)
tAAACCGTATGGCGG.TGGATTTTGAAGaaatcaaat < 1:5611623/36‑1 (MQ=255)
tAAACCGTATGGCGG.GGGGTTTTTTATaaatcaaat > 1:1479177/1‑36 (MQ=16)
aaaCCGTATGGCGG.TGGATTTTGAAGaaatcaaatc < 1:5965185/36‑1 (MQ=255)
aaCCGTATGGCGG.TGGATTTTGAAGAaatcaaatca < 1:41939/36‑1 (MQ=255)
aCCGTATGGCGG.TGGGTTTTTTAGaaatcaaatccc > 1:2616391/1‑34 (MQ=25)
ccGTATGGCGG.TGGGATTTTTAGAAAataaattaaa > 1:5019895/1‑36 (MQ=2)
ccGTATGGCGG.TGGATTTTGAAGAAAtcaaatcaaa < 1:7158016/36‑1 (MQ=255)
gTATGGCGG.TGGATTTTTAAGAAATCAAATCAAAAg > 1:7423678/1‑36 (MQ=255)
gTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAg < 1:6096363/36‑1 (MQ=255)
tATGTCGG.TGGATTTTGAAGAAATCAAATCAAAAGt < 1:2306725/36‑1 (MQ=255)
aTGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTa < 1:781235/36‑1 (MQ=255)
tGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTag < 1:638762/36‑1 (MQ=255)
ggCGG.TGGATTTTGAAGAAATCAAATCAAAAGTaga > 1:522045/1‑36 (MQ=255)
ggCGG.TGGATTTTGAAGAAATCAAATCAAAAGTaga < 1:7618035/36‑1 (MQ=255)
g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc > 1:7035929/1‑36 (MQ=255)
g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc < 1:690710/36‑1 (MQ=255)
g.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTc > 1:4480968/1‑36 (MQ=255)
ggATTTTGAAGAAATCAAATCAAAAGTAGAGTTCaa < 1:7391952/36‑1 (MQ=255)
ggATTTTGAAGAAATCAAATCAAAAGTAGAGTTCaa > 1:1558301/1‑36 (MQ=255)
gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac > 1:7352684/1‑36 (MQ=255)
gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac > 1:1893644/1‑36 (MQ=255)
gATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAac < 1:2757673/36‑1 (MQ=255)
aTTTTGAAGAAATCAAATCAAAAGTAGAGTTCAaca < 1:4851471/36‑1 (MQ=255)
ttttGAAGAAATCAAATCAAAAGTAGAGTTCAacac < 1:2564547/36‑1 (MQ=255)
ttttGAAGAAATCAAATCAAAAGTAGAGTTCAacac < 1:3331163/36‑1 (MQ=255)
ttGAAGAAATCAAATCAAAAGTAGAGTTCAacacag > 1:5907005/1‑34 (MQ=255)
ttGAAGAAATCAAATCAAAAGTAGAGTTCAACACCg < 1:6755703/36‑1 (MQ=255)
ttGAAGAAATCAAATCAAAAGTAGAGTTCAACACCg > 1:5710138/1‑36 (MQ=255)
ttGAAGAAATCAAATCAAAAGTAGAGTTCAACACCg > 1:491722/1‑36 (MQ=255)
ttGAAGAAATCAAATCAAAAGTAGAGTTCAACACCg < 1:7780469/36‑1 (MQ=255)
tGAAGAAATCAAATCAAAAGTAGAGTTCAACACCGa < 1:4676304/36‑1 (MQ=255)
gaagaaATCAAATCAAAAGTAGAGTTCAACACCGAg > 1:1448952/1‑36 (MQ=255)
gaagaaATCAAATCAAAAGTAGAGTTCAACACCGAg > 1:6624787/1‑36 (MQ=255)
gaagaaATCAAATCAAAAGTAGAGTTCAACACCGAg < 1:3595232/36‑1 (MQ=255)
gaagaaATCAAATCAAAAGTAGAGGTCAACACCGAg > 1:4638475/1‑36 (MQ=255)
|
AGGGTGACAAGCTAAACCGTATGGCGG.TGGATTTTGAAGAAATCAAATCAAAAGTAGAGTTCAACACCGAG > REL606/3014273‑3014343
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|