Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,381,587 | G→T | 14.5% | F82L (TTC→TTA) | pioO ← | part of gsp divergon involved in type II protein secretion |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,381,587 | 0 | G→T | 14.5% | 3.1 ‑4.4 ‑0.0 | 27 | 246 | pioO | part of gsp divergon involved in type II protein secretion |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (6/17): total (10/17) | ||||||||||
Fisher's exact test strand distribution p-value = 1.20e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.87e-01 |
TCGACGGATTCGACGACGGGGAGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTAAAAGCGGG > REL606/3381552‑3381622
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tcGACGGATTCGACGACGGGGAGTGGCTGTTTTTTg < 1:3585346/36‑1 (MQ=255)
gACGGATTCGACGACGGGGAGTGGCTGTTTTTTgaa < 1:484227/36‑1 (MQ=255)
cGGATTCGACGACGGGGAGTGGCTGTTTTTTgaata < 1:4074452/36‑3 (MQ=255)
ggATTCGACGACGTGGAGTGGCTGTTTTTTgaagaa < 1:4742716/36‑1 (MQ=255)
atCGGCGACGGGGAGTGGCTGTTTTTTGAAGAAATa < 1:141601/35‑1 (MQ=255)
gacgacGGGGAGTGGCTGGTTTTTTTAGAAATAttg > 1:1068395/1‑36 (MQ=16)
gacgacGGGGAGTGGCTGGGTTTTTTAGAAATAgtg > 1:231145/1‑36 (MQ=16)
gcgacgGGGAGTGGCTGTTTTTTGAAGAAATAgtgt < 1:66368/35‑1 (MQ=255)
cgacgGGGAGTGGCTGTTTTTTGAAGAAATAgtgtt < 1:5622545/36‑1 (MQ=255)
gacgGGGAGTGGCTGGTTTTTTTTGGAAAAgtgttg > 1:5770304/1‑36 (MQ=9)
ggggAGTGGCTGTTTTTTGAAGAAATAgtgttgtgt < 1:1952550/36‑1 (MQ=255)
ggggAGTGGCTGGTTTTTTTAGAAAAAgtgttgtgt > 1:2240238/1‑36 (MQ=19)
gggAGTGGCTGTTTTTTGAAGAGATAgtgttgtgtt < 1:5155169/36‑1 (MQ=255)
gggAGTGGCTGTTTTTTGAAGAAATAgtgttgtgtt < 1:5565953/36‑1 (MQ=255)
aGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGAt < 1:1346627/36‑1 (MQ=255)
aGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGAt < 1:4000306/36‑1 (MQ=255)
gTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGAtt < 1:118445/36‑1 (MQ=255)
ggCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGt > 1:742052/1‑36 (MQ=255)
ggCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGt < 1:4053055/36‑1 (MQ=255)
gCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGtt > 1:3490170/1‑36 (MQ=255)
cTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGttt < 1:3828250/36‑1 (MQ=255)
cTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGttt < 1:4729519/36‑1 (MQ=255)
cTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGttt < 1:2379116/36‑1 (MQ=255)
cTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGttt < 1:64925/36‑1 (MQ=255)
tGTTTTTTGAGGAAATAGTGTTGTGTTGATTGTTTa < 1:2729185/36‑1 (MQ=255)
tGTTTATTGCAGAAATAGTGTTGTGTTGATTGTTTa < 1:2158453/36‑1 (MQ=38)
gTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTaa > 1:5852783/1‑36 (MQ=255)
gTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTaa > 1:1380875/1‑36 (MQ=255)
ttttttGAAGAAATAGTGTTGTGTTGATTGTTTaaa > 1:1962797/1‑36 (MQ=255)
tttttGCAGACATAGTGTTGTGTTGATTGTTTaaaa < 1:3259138/36‑1 (MQ=37)
tttGAAGAAATAGTGTTGTGTTGATTGTTTAAAAGc > 1:3518084/1‑36 (MQ=255)
gaagaaATAGGGTTGTGGTGATTGTTTAAAAGCagg > 1:5327824/1‑36 (MQ=25)
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TCGACGGATTCGACGACGGGGAGTGGCTGTTTTTTGAAGAAATAGTGTTGTGTTGATTGTTTAAAAGCGGG > REL606/3381552‑3381622
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 18 ≤
ATCG
< 28 ≤
ATCG
< 37 ≤
ATCG
|