Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,929,920 | 0 | T→. | 2.5% | 0.2 0.0 ‑0.0 | 81 | coding (319/567 nt) | yecD | predicted hydrolase |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (1/1): ref base (36/43): total (37/44) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.92e-01 |
GCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGC > REL606/1929885‑1929955
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gCGATATCGAAATCATCAAACGTCAATGGGGTGCGt > 1:7360966/1‑36 (MQ=255)
gCGATATCGAAATCATCAAACGTCAATGGGGTGCGt < 1:519912/36‑1 (MQ=255)
gCGATATCGAAATCATCAAACGTCAATGGGGTGCGt < 1:6291014/36‑1 (MQ=255)
gATATCGAAATCATCAAACGTCACTGGGGTGCGttt < 1:7554259/36‑1 (MQ=255)
gATATCGAAATCATCAAACGTCAATGGGGTGCGttt > 1:7878967/1‑36 (MQ=255)
atatCGAAATCATCAAACGTCAATGGGGTGCGtttt < 1:2944965/36‑1 (MQ=255)
atatCGAAATCATCAAACGTCAATGGGGTGCGtttt < 1:80335/36‑1 (MQ=255)
atatCGAAATCATCAAACGTCAATGGGGTGCGtttt > 1:3170871/1‑36 (MQ=255)
atatCGAAATCATCAAACGTCAATGGGGTGCGtttt < 1:1764385/36‑1 (MQ=255)
tatCGAAATCATCAAACGTCAATGGGGTGCGTTTta < 1:4597808/36‑1 (MQ=255)
tatCGAAATCATCAAACGTCAATGGGGTGCGTTTta > 1:2355011/1‑36 (MQ=255)
tatCGAAATCATCAAACGTCAATGGGGTGCGTTTta < 1:6022962/36‑1 (MQ=255)
tatCGAAATCATCAAACGTCAATGGGGTGCGTTTta > 1:6109213/1‑36 (MQ=255)
atCGAAATCATCAAACGTCAATGGGGTGCGTTTtac < 1:6642186/36‑1 (MQ=255)
atCGAAATCATCAAACGTCAATGGGGTGCGTTTtac > 1:2707586/1‑36 (MQ=255)
atCGAAATCATCAAACGTCAATGGGGTGCGTTTtac < 1:7341701/36‑1 (MQ=255)
atCGAAATCATCAAACGTCAATGGGGTGCGTTTtac < 1:908553/36‑1 (MQ=255)
tCGAAATCATCAAACGTCAATGGGGTGCGTTTtacg < 1:6529291/36‑1 (MQ=255)
tCGAAATCATCAAACGTCAATGGGGTGCGTTTtacg < 1:6993989/36‑1 (MQ=255)
tCGAAATCATCAAACGTCAATGGGGTGCGTTTtacg < 1:4040970/36‑1 (MQ=255)
cGAAATCATCAAACGTCAATGGGGTGCGTTTtacgg < 1:5037145/36‑1 (MQ=255)
gAAATCATCAAACGTCACTGGGGTGCGTTTtacggt < 1:2858678/36‑1 (MQ=255)
gAAATCATCAAACGTCAATGGGGTGCGTTTtacggt < 1:5317654/36‑1 (MQ=255)
gAAATCATCAAACGTCAATGGGGTGCGTTTtacggt < 1:3579184/36‑1 (MQ=255)
gAAATCATCAAACGTCAATGGGGTGCGTTTtacggt < 1:1043471/36‑1 (MQ=255)
gAAATCATCAAACGTCAATGGGGTGCGTTTtacggt > 1:1456714/1‑36 (MQ=255)
gAAATCATCAAACGTCAATGGGGTGCGTTTtacgga > 1:1215047/1‑35 (MQ=255)
aaaTCATCAAACGTCAATGGGGTGCGTTTtacggta < 1:6186845/36‑1 (MQ=255)
aaaTCATCAAACGTCAATGGGGTGCGTTTtacggta > 1:2055752/1‑36 (MQ=255)
aaaTCATCAAACGACAATGGGGTGCGTTTtacggta > 1:815412/1‑36 (MQ=255)
aaTCATCAAACGTCAATGGGGTGCGTTTtacggtac < 1:1302449/36‑1 (MQ=255)
aaTCATCAAACGTCAATGGGGTGCGTTTtacggtac < 1:4012414/36‑1 (MQ=255)
aaTCATCAAACGTCAATGGGGTGCGTTTtacggtac > 1:2783301/1‑36 (MQ=255)
aaTCATCAAACGTCAATGGGGTGCGTTTtacggtac < 1:7820223/36‑1 (MQ=255)
aaTCATCAAACGTCAATGGGGTGCGTTTtacggtac < 1:5750459/36‑1 (MQ=255)
atcatcAAACGTCAATGGGGTGCTTTTtacggtacg > 1:7752684/1‑36 (MQ=255)
atcatcAAACGTCAATGGGGTGCGTTTtacggtacg < 1:3157498/36‑1 (MQ=255)
atcatcAAACGTCAATGGGGTGCGTTTtacggtacg > 1:2782373/1‑36 (MQ=255)
tcatcaAACGTCAATGGGGTGAGTTTtacggtacgg > 1:1725859/1‑36 (MQ=255)
catcaAACGTCAATGGGGTGCGTTTTACGGTACGGa < 1:3714397/36‑1 (MQ=255)
catcaAACGTCAATGGGGTGCGTTTTACGGTACGGa > 1:3228240/1‑36 (MQ=255)
atcaAACGTCAATGGGGTGCGTTTtaccgtacggtt > 1:7786721/1‑34 (MQ=37)
atcaAACGTCAATGGGGTGCGTTTTACGGTACGGAt < 1:6624247/36‑1 (MQ=255)
atcaAACGTCAATGGGGTGCGTTTTACGGTACGGAt < 1:3828495/36‑1 (MQ=255)
atcaAACGTCAATGGGGTGCGTTTTACGGTACGGAt < 1:4822687/36‑1 (MQ=255)
atcaAACGTCAATGGGGTGCGTTTTACGGTACGGAt < 1:1504794/36‑1 (MQ=255)
atcaAACGTCAATGGGGTGCGTTTTACGGCACGGAt > 1:3185379/1‑36 (MQ=255)
tcaAACGTCAATGGGGTGCGTTTTACGGTACGGATc < 1:4933992/36‑1 (MQ=255)
tcaAACGTCAATGGGGTGCGTTTTACGGTACGGATc < 1:2874981/36‑1 (MQ=255)
tcaAACGTCAATGGGGTGCGTTTTACGGTACGGATc < 1:5761259/36‑1 (MQ=255)
caAACGTCAATGGGGTGCGTTTTACGGTACGGATCt < 1:6375734/36‑1 (MQ=255)
aaaCGTCAATGGGGTGCGTTTTACGGTACGGATCTg < 1:7159859/36‑1 (MQ=255)
aaaCGTCAATGGGGTGCGTTTTACGGTACGGATCTg < 1:4641855/36‑1 (MQ=255)
aaCGTCAATGGGGTGCGTTTTACGGTACGGATCTgg > 1:18095/1‑36 (MQ=255)
aaCGTCAATGGGGTGCGTTTTACGGTACGGATCTgg > 1:7250979/1‑36 (MQ=255)
aaCGTCAATGGGGTGCGTTTTACGGTACGGATCTgg > 1:3020862/1‑36 (MQ=255)
aaCGTCAATGGGGTGCGTTTTACGGTACGGATCTgg > 1:5067060/1‑36 (MQ=255)
aaCGTCAATGGGGTGCG.TTTACGGTACGGATCTGGa > 1:5490468/1‑36 (MQ=37)
aCGTCAATGGGGTGCGTTTTACGGTACGGATCTGGa > 1:1430078/1‑36 (MQ=255)
aCGTCAATGGGGTGCGTTTTACGGTACGGATCTGGa < 1:4687402/36‑1 (MQ=255)
cGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAg > 1:1342164/1‑36 (MQ=255)
cGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAg > 1:7005961/1‑36 (MQ=255)
gTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGt < 1:4497199/36‑1 (MQ=255)
gTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGt > 1:2101624/1‑36 (MQ=255)
tCAATGGGGTGCGTTTTACGGTACGGATCTGGAGtt > 1:7080672/1‑36 (MQ=255)
cAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTg < 1:6430289/36‑1 (MQ=255)
cAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTg > 1:6614021/1‑36 (MQ=255)
aaTGGGGTGCGTTTTACGTTACGGATCTGGAGTTGc > 1:6314548/1‑36 (MQ=255)
aaTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGc > 1:4920617/1‑36 (MQ=255)
aaTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGc > 1:5730454/1‑36 (MQ=255)
aaTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGc > 1:601076/1‑36 (MQ=255)
aaTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGc > 1:5886261/1‑36 (MQ=255)
aTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCa < 1:1649384/36‑1 (MQ=255)
aTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCa < 1:786110/36‑1 (MQ=255)
aTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCa > 1:449611/1‑36 (MQ=255)
aTGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCa < 1:7615532/36‑1 (MQ=255)
ggggTGCGTTTTACGGTACGGATCTGGAGTTGCAAt > 1:5023291/1‑36 (MQ=255)
ggggTGCGTTTTACGGTACGGATCTGGAGTTGCAAt > 1:7430700/1‑36 (MQ=255)
gggTGCGTTTTACGGTACGGATCTGGAGTTGCAAtt > 1:2557647/1‑36 (MQ=255)
gggTGCGTTTTACGGTACGGATCTGGAGTTGCAAtt < 1:4320190/36‑1 (MQ=255)
gggTGCGTTTTACGGTACGGATCTGGAGTTGCAAtt < 1:749938/36‑1 (MQ=255)
ggTGCG.TTTACGGTACGGATCTGGAGTTGCAAtttc < 1:2484235/36‑3 (MQ=37)
gTGCGTTTTACGGTACGGATCTGGAGTTGCAATTAc < 1:454685/36‑1 (MQ=255)
gCGTTTTACGGTACGGATCTGGAGTTGCAATTAcgc > 1:3444015/1‑36 (MQ=255)
cGTTTTACGGTACGGATCTGGAGTTGCAATTAcgcc < 1:2808327/36‑1 (MQ=255)
cGTTTTACGGTACGGATCTGGAGTTGCAATTAcgcc > 1:7540606/1‑36 (MQ=255)
cGTTTTACGGTACGGATCTGGAGTTGCAATTAcgcc < 1:7431970/36‑1 (MQ=255)
cGTTTTACGGTACGGATCTGGAGTTGCAATTAcgcc < 1:1701305/36‑1 (MQ=255)
gTTTTACGGTACGGATCTGGAGTTGCAATTAcgccg < 1:3963432/36‑1 (MQ=255)
gTTTTACGGTACGGATCTGGAGTTGCAATTAcgccg > 1:7043775/1‑36 (MQ=255)
ttttACGGTACGGATCTGGAGTTGCAATTAcgccgc < 1:6641921/36‑1 (MQ=255)
ttttACGGTACGGATCTGGAGTTGCAATTAcgccgc < 1:3284816/36‑1 (MQ=255)
ttttACGGTACGGAGCTGGAGTTGCAATTAcgccgc > 1:7829444/1‑36 (MQ=255)
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GCGATATCGAAATCATCAAACGTCAATGGGGTGCGTTTTACGGTACGGATCTGGAGTTGCAATTACGCCGC > REL606/1929885‑1929955
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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