Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,120,587 | A→C | 14.0% | T119P (ACA→CCA) | yqiG → | predicted outer membrane usher protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,120,587 | 0 | A→C | 14.0% | 2.6 ‑4.5 ‑0.1 | 50 | 355 | yqiG | predicted outer membrane usher protein |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (20/23): total (27/23) | ||||||||||
Fisher's exact test strand distribution p-value = 1.13e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.27e-01 |
ATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCC > REL606/3120552‑3120622
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aTGGTTGTTACCCTATCGAAAAAGAAAAACAAATTa > 1:885037/1‑36 (MQ=255)
tGGTTGTTACCCTATCGAAAAAGAAAAACAAATTAc > 1:7142850/1‑36 (MQ=255)
tGGTTGTTACCCTATCGAAAAAGAAAAACAAATTAc > 1:1157050/1‑36 (MQ=255)
tGGTTGTTACCCTATCGAAAAAGAAAAACAAATTAc > 1:7828409/1‑36 (MQ=255)
tGGTTGTTACACTATCGAAAAAGAAAAACAAATTAc < 1:447136/36‑1 (MQ=255)
ggTTGTTACCCTATCGAAAAAGAAAAACAAATTACa > 1:6932787/1‑36 (MQ=255)
ggTTGTTACCCTATCGAAAAAGAAAAACAAATTACa > 1:7501615/1‑36 (MQ=255)
gttgttACCCTATCGAAAAAGAAAAACAAATTACaa > 1:2395384/1‑36 (MQ=255)
ttgttACCCTATCGAAAAAGAAAAACAAATTACAAc > 1:3053425/1‑36 (MQ=255)
ttgttACCCTATCGAAAAAGAAAAACAAATTACAAc < 1:975898/36‑1 (MQ=255)
tgttACCCTATCGAAAAAGAAAAACAAATTACAACt < 1:450152/36‑1 (MQ=255)
tgttACCCTATAGAAAAAGAAAAACAAATTACAACt < 1:224974/36‑1 (MQ=255)
ttACCCTATCGAAAAAGAAAAACAAATTACAACTTa > 1:5111068/1‑36 (MQ=255)
tACCCTATCGAAAAAGAAAAACAAATTACAACTTAt < 1:224803/36‑1 (MQ=255)
tACCCTATCGAAAAAGAAAAACAAATTACAACTTAt < 1:1122082/36‑1 (MQ=255)
tACACTATCGAAAAAGAAAAACAAATTACAACTTAt < 1:2393400/36‑1 (MQ=255)
aCCCTATCGAAAAAGAAAAACAAATTCCAACTTAtc > 1:143395/1‑36 (MQ=255)
cccTATCGAAAAAGAAAAACAAATTACAACTTAtct < 1:3098667/36‑1 (MQ=255)
ccTATCGAAAAAGAAAAACAAATTACAACTTAtctc > 1:6923449/1‑36 (MQ=255)
tATCGAAAAAGAAAAACAAATTACAACTTATCTCGa > 1:6587230/1‑36 (MQ=255)
tATAGAAAAAGAAAAACAAATTACAACTTATCTCGa < 1:2439836/36‑1 (MQ=255)
aTCGAAAAAGAAAAACAAATTACAACTTATCTCGAt < 1:2223980/36‑1 (MQ=255)
aTCGAAAAAGAAAAACAAATTACAACTTATCTCGAt < 1:4568470/36‑1 (MQ=255)
tCGAAAAAGAAAAACAAATTCCAACTTATCTCGATa > 1:4704903/1‑36 (MQ=255)
cGAAAAAGAAAAACAAATTCCAACTTATCTCGATaa > 1:6744292/1‑36 (MQ=255)
cGAAAAAGAAAAACAAATTACAACTTATCTCGATaa < 1:2422532/36‑1 (MQ=255)
cGAAAAAGAAAAACAAATTACAACTTATCTCGATaa > 1:5780178/1‑36 (MQ=255)
cGAAAAAGAAAAACAAATTACAACTTATCTCGATaa > 1:1183671/1‑36 (MQ=255)
gaaaaagaaaaaCAAATTCCAACTTATCTCGATaaa > 1:7878299/1‑36 (MQ=255)
gaaaaagaaaaaCAAATTACAACTTATCTCGATaaa > 1:2798517/1‑36 (MQ=255)
aaaaagaaaaaCAAATTCCAACTTATCTCGATAAAg > 1:7246552/1‑36 (MQ=255)
aaaaagaaaaaCAAATTACAACTTATCTCGATAAAg < 1:137242/36‑1 (MQ=255)
aaaagaaaaaCAAATTACAACTTATCTCGATAAAgg < 1:3307783/36‑1 (MQ=255)
aaagaaaaaCAAATTCCAACTTATCTCGATAAAggg > 1:3575684/1‑36 (MQ=255)
aagaaaaaCAAATTACAACTTATCTCGATAAAGGGa < 1:5607005/36‑1 (MQ=255)
aagaaaaaCAAATTACAACTTATCTCGATAAAGGGa > 1:1121367/1‑36 (MQ=255)
agaaaaaCAAATTACAACTTATATCGATAAAGGGaa > 1:7253325/1‑36 (MQ=255)
aaaaaCAAATTACAACTTATCTCGATAAAGGGaaaa > 1:222403/1‑36 (MQ=255)
aaaaaCAAATTACAACTTATCTCGATAAAGGGaaaa < 1:7056615/36‑1 (MQ=255)
aaaaaCAAATTACAACTTATCTCGATAAAGGGaaaa < 1:6665674/36‑1 (MQ=255)
aaaaCAAATTACAACTTATCTCGATAAAGGGAAAAt > 1:4162425/1‑36 (MQ=255)
aaaCAAATTCCAACTTATCTCGATAAAGGGAAAATg > 1:2694597/1‑36 (MQ=255)
aaCAAATTACAACTTATCTCGATAAAGGGAAAATGc > 1:3759633/1‑36 (MQ=255)
aaCAAATTACAACTTATCTCGATAAAGGGAAAATGc < 1:4263372/36‑1 (MQ=255)
aCAAATTACAACTTATCTCGATAAAGGGAAAATGCa > 1:2381655/1‑36 (MQ=255)
cAAATTACAACTTATCTCGATAAAGGGAAAATGCaa > 1:3714145/1‑36 (MQ=255)
aaaTTACAACTTATCTCGATAAAGGGAAAATGCAAt < 1:7253790/36‑1 (MQ=255)
aaaTTACAACTTATCTCGATAAAGGGAAAATGCAAt < 1:2375212/36‑1 (MQ=255)
tACAACTTATCTCGATAAAGGGAAAATGCAATTATc < 1:6716786/36‑1 (MQ=255)
tACAACTTATCTCGATAAAGGGAAAATGCAATTATc < 1:4756663/36‑1 (MQ=255)
tACAACTTATCTCGATAAAGGGAAAATGCAATTATc < 1:5327889/36‑1 (MQ=255)
aCAACTTATCTCGATAAAGTGAAAATGCAATTATcc < 1:1447210/36‑1 (MQ=255)
aCAACTTATCTCGATAAAGGGAAAATGCAATTATcc < 1:6559577/36‑1 (MQ=255)
aCAACTTATCTCGATAAAGGGAAAATGCAATTATcc < 1:2079288/36‑1 (MQ=255)
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ATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCC > REL606/3120552‑3120622
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|