Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,126,699 | Δ1 bp | 50.0% | coding (335/879 nt) | pflC → | pyruvate formate lyase II activase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,126,699 | 0 | T→. | 50.0% | 68.4 0.0 ‑0.1 | 32 | coding (335/879 nt) | pflC | pyruvate formate lyase II activase |
Reads supporting (aligned to +/- strand): new base (7/9): ref base (6/10): total (13/19) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.79e-01 |
TGACGCTCTGGAACGGGAAGTGATGAAAGATGACATTTTTTTTCGCACGTCCGGCGGCGGCGTCAC > REL606/4126664‑4126729
|
tGACGCTCTGGAACGGGAAGTGATGAAAGATGACAt < 1:1746603/36‑1 (MQ=255)
gACGCTCTGGAACGGGAAGTGATGAAAGATGACAtt < 1:2065987/36‑1 (MQ=255)
aCGCTCTGGAACGGGAAGTGATGAAAGATGACAttt > 1:520035/1‑36 (MQ=255)
aCGCTCTGGAACGGGAAGTGATGAAAGATGACAttt < 1:6454639/36‑1 (MQ=255)
aCGCTCTGGAACGGGAAGTGATGAAAGATGACAttt < 1:3261712/36‑1 (MQ=255)
ctctctGGAACGTGAAGTGATGAAAGATGACAtttt < 1:3595884/34‑1 (MQ=37)
cGCTCTGGAACGGGAAGTGATGAAAGATGACAtttt < 1:2938953/36‑1 (MQ=255)
ctctGGAACGGGAAGTGATGAAAGATGACAtttttt < 1:599275/36‑1 (MQ=255)
tctGGAACGGGAAGTGATGAAAGATGACAttttttt > 1:1961950/1‑36 (MQ=255)
tctGGAACGGGAAGTGATGAAAGATGACAttttttt < 1:6550066/36‑1 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttt < 1:2230789/36‑1 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttc < 1:3595215/36‑2 (MQ=255)
ctGGAACGGGAAGTGATGAAAGATGACAtttttttc < 1:7496953/36‑2 (MQ=255)
atGGAACGGGAAGTGATGAAAGATGACAtttttttc < 1:5828018/35‑2 (MQ=255)
tGGAACGGGAAGTGATGAAAGATGACAtttttttcg > 1:4536883/1‑34 (MQ=255)
tGGAACGGGAAGTGATGAAAGATGACATTTTTTTTc > 1:3461036/1‑36 (MQ=255)
tGGAACGGGAAGTGATGAAAGATGACATTTTTTTTc < 1:5332976/36‑1 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACAtttttttcgc > 1:5023483/1‑33 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACATTTTTTTTCg > 1:3444797/1‑36 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACATTTTTTTTCg > 1:2495689/1‑36 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACATTTTTTTTCg < 1:6828263/36‑1 (MQ=255)
ggAACGGGAAGTGATGAAAGATGACATTTTTTTTCg < 1:3869547/36‑1 (MQ=255)
aaCGGGAAGTGATGAAAGATGACATTTTTTTTCGCa > 1:1131082/1‑36 (MQ=255)
aCGGGAAGTGATGAAAGATGACA.TTTTTTTCGCACg > 1:743772/1‑36 (MQ=37)
gggAAGTGATGAAAGATGACATTTTTTTTCGCACGt < 1:5916686/36‑1 (MQ=255)
gggAAGTGATGAAAGATGACATTTTTTTTCGCACGt > 1:559970/1‑36 (MQ=255)
gggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTc > 1:7443733/1‑36 (MQ=37)
gggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTc < 1:3865682/36‑1 (MQ=37)
ggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTcc < 1:1076321/36‑1 (MQ=37)
ggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTcc < 1:387996/36‑1 (MQ=37)
ggAAGTGATGAAAGATGACA.TTTTTTTCGCACGTcc < 1:1378364/36‑1 (MQ=37)
gAAGTGATGAAAGATGACATTTTTTTTCGCACGTcc < 1:3613413/36‑1 (MQ=255)
gAAGTGATGAAAGATGACATTTGTTTTCGCACGTcc > 1:7882095/1‑36 (MQ=255)
gAAGTGATGAAAGATGACA.TTTTTTTCGCACGTCcg > 1:3758303/1‑36 (MQ=37)
gAAGTGATGAAAGATGACA.TTTTTTTCGCACGTCcg < 1:1402691/36‑1 (MQ=37)
aaGTGATGAAAGATGACA.TTTTTTTCGCACGTCcgg < 1:3549102/36‑1 (MQ=37)
aGTGATGAAAGATGACA.TTTTTTTCGCACGTCcggc < 1:6173274/36‑1 (MQ=38)
aGTGATGAAAGATGACA.TTTTTTTCGCACGTCcggc > 1:7350348/1‑36 (MQ=38)
gTGATGAAAGATGACATTTTTTTTCGCACGTCcggc < 1:6178784/36‑1 (MQ=255)
tgatgaAAGATGACA.TTTTTTTCGCACGTCcggcgg > 1:7452722/1‑36 (MQ=38)
gatgaAAGATGCCATTTTTTTTCGCACGTCcggcgg < 1:7154527/36‑1 (MQ=255)
gatgaAAGATGACA.TTTTTTTCGCACGTCcggcggc < 1:5033960/36‑1 (MQ=38)
gatgaAAGATGACA.TTTTTTTCGCACGTCcggcggc > 1:6172801/1‑36 (MQ=38)
tgaAAGATGACATTTTTTTTCGCACGTCcggcggcg < 1:6527770/36‑1 (MQ=255)
tgaAAGATGACA.TTTTTTTCGCACGTCcggcggcgg > 1:4590821/1‑36 (MQ=37)
aaaGATGACATTTTTTTTCGCTCGTCCggcggcggc < 1:1772622/36‑1 (MQ=255)
gATGACATTTTTTTTCGCACGTCCGGCGGCGGCGTc < 1:6011346/36‑1 (MQ=255)
aTGACA.TTTTTTTCGCACGTCCGGCGGCGGCGTTAc < 1:5275054/36‑1 (MQ=21)
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TGACGCTCTGGAACGGGAAGTGATGAAAGATGACATTTTTTTTCGCACGTCCGGCGGCGGCGTCAC > REL606/4126664‑4126729
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 23 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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