New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1460974NA (NA)12 (0.200) 7/70 NT NA intergenic (+62/‑37) insB‑12/cybB IS1 protein InsB/cytochrome b561
?REL606 2332094 = NA (NA)intergenic (+34/‑53) yfbM/ECB_02199 hypothetical protein/PROBABLE ISRSO11‑TRANSPOSASE ORFA PROTEIN

ATGGTGTCAGAGCGCCAAAAAAAACCGCCGAGCATGTGAACTGCACCCCAAAAGTTGGACACTCAACG  >  REL606/2332060‑2332127
                                  |                                 
aTGGTGTAAGAGCGCAAAAAAAAACCGCCGAGCAtg                                  <  1:653897/36‑1 (MQ=37)
 tGGTGTCAGAGCGCCAAAAAAAACCGCCGAGCAtgt                                 >  1:4132774/1‑36 (MQ=255)
 tGGTGTCAGAGCGCCAAAAAAAACCGCCGAGCAtgt                                 >  1:6508657/1‑36 (MQ=255)
 tGGTGTCAGAGCGCCAAAAAAAACCGCCGAGCAtgt                                 >  1:2049779/1‑36 (MQ=255)
 tGGTGGCAGAGCGCAAAAAAAAACCGCCGAGCAtgt                                 >  1:7139778/1‑36 (MQ=37)
 tGGTGCAAGAGCGCAAAAAAAACCCGCCGAGCAtgt                                 <  1:7092786/36‑1 (MQ=16)
  ggTGTCAGAGCGCCAAAAAAAACCGCCGAGCAtgtg                                >  1:6636010/1‑36 (MQ=255)
     gtCAGAGCGCCAAAAAAAACCGCCGAGCATGTGAAc                             >  1:2964740/1‑36 (MQ=255)
      tCAGAGCGCCAAAAAAAACCGCCGAGCATGTGAACt                            >  1:4881674/1‑36 (MQ=255)
       cAGAGCGCCAAAAAAAACCGCCGAGCATGTGAACTg                           >  1:6354838/1‑36 (MQ=255)
        agagCGCCAAAAAAAACCGCCGAGCATGCGAACTGc                          >  1:665220/1‑36 (MQ=255)
         gagCGCCAAAAAAAACCGCCGAGCATGTGAACGGCa                         >  1:6407947/1‑36 (MQ=255)
         gagCGAAAAAAAAAACCGCCGAGCATGTGAACTGCa                         <  1:933689/36‑1 (MQ=37)
            cgcCAAAAAAAACCGCCGAGCATGTGAACTGCAccc                      >  1:7241446/1‑36 (MQ=255)
             gcCAAAAAAAACCGCCGAGCATGTGAACTGCAcccc                     >  1:2964771/1‑36 (MQ=255)
              aaaaaaaaagCCGCCGAGCATGTTAACTGCACCCCa                    <  1:5440610/34‑1 (MQ=25)
              aaaaaaaaaaCCGCCGAGCATGTGAACTGCACCCCa                    <  1:2759794/34‑1 (MQ=255)
              aaaaaaaaaaCCGCCGAGCATGTGAACTGCACCCCa                    <  1:3383290/34‑1 (MQ=255)
               cAAAAAAAACCGCCGAGCATGTGAACTGCACCCCaa                   >  1:1726884/1‑36 (MQ=255)
               aaaaaaaaaCCGCCGAGCATGTGAACTGCACCCCaa                   <  1:6828953/35‑1 (MQ=255)
                aaaaaaaaCCGCCGAGCATGTGAACTGCACCCCaaa                  <  1:5211847/36‑1 (MQ=255)
                 ccggagaaaagcccgttTGTGAACTGCACCCCaaaa                 >  1:7455072‑M2/18‑36 (MQ=255)
                 ccggagaaaagcccgttTGTGAACTGCACCCCaaaa                 >  1:7928285‑M2/18‑36 (MQ=255)
                  aaaaaaCCGCCGAGCATGTGAACTGCACCCCAAAAg                >  1:3254033/1‑36 (MQ=255)
                  aaaaaaCCGCCGAGCATGTGAACTGCACCCCAAAAg                >  1:5805073/1‑36 (MQ=255)
                  aaaaaaCCGCCGAGCATGTGAACTGCACCCCAAAAg                >  1:149270/1‑36 (MQ=255)
                   aaaacCCGCCGAGCATGTGAACTGCACCCCAAAAGt               <  1:4618632/36‑1 (MQ=255)
                   aaaaaCCGCCGAGCATGTGAACTGCACCCCAAAAGt               <  1:3261855/36‑1 (MQ=255)
                    gagaaaagcccgttTGTGAACTGCACCCCAAAAGtt              >  1:5179029‑M2/15‑36 (MQ=255)
                    aaaaCCGCCGAGCATGTGAACTGCACCCCAAAAGtt              <  1:1005409/36‑1 (MQ=255)
                    aaaaCCGCCGAGCATGTGAACTGCACCCCAAAAGtt              <  1:6628393/36‑1 (MQ=255)
                    aaaaCCGCCGAGCATGTGAACTGCACCCCAAAAGtt              >  1:4654537/1‑36 (MQ=255)
                    aaaaCCGCCGAGCATGTGAACTGCACCCCAAAAGtt              >  1:3818506/1‑36 (MQ=255)
                     agaaaagcccgttTGTGAACTGCACCCCAAAAGTTg             >  1:7568638‑M2/14‑36 (MQ=255)
                      aaCCGCCGAGCATGTGAACTGCCCCCCAAAAGTTgg            <  1:1973444/36‑1 (MQ=255)
                      aaCCGCCGAGCATGTGAACTGCACCCCAAAAGTTgg            >  1:7639365/1‑36 (MQ=255)
                      aaCCGCCGAGCATGTGAACTGCACCCCAAAAGTTgg            >  1:3816995/1‑36 (MQ=255)
                      aaCCGCCGAGCATGTGAACTGCACCCCAAAAGTTgg            >  1:2652679/1‑36 (MQ=255)
                        ccgccgAGCATGTGAACTGCACCCCAAAAGTTGGac          >  1:5621179/1‑36 (MQ=255)
                        ccgccgAGCATGTGAACTGCACCCCAAAAGTTGGac          >  1:7307130/1‑36 (MQ=255)
                         aagcccgttTGTGAACTGCACCCCAAAAGTTGgacc         >  1:2463988‑M2/10‑35 (MQ=255)
                         aagcccgttTGTGAACTGCACCCCAAAAGTTGGaca         >  1:2703957‑M2/10‑36 (MQ=255)
                         aagcccgttTGTGAACTGCACCCCAAAAGTTGGaca         >  1:4491339‑M2/10‑36 (MQ=255)
                           ccgAGCATGTGAACTGCACCCCAAAAGTTGGACACt       >  1:1501435/1‑36 (MQ=255)
                           ccgAGCATGTGAACTGCACCCCAAAAGTTGGACACt       >  1:4208532/1‑36 (MQ=255)
                            cgAGCATGTGAACTGCACCCCAAAAGTTGGACACTc      <  1:4692653/36‑1 (MQ=255)
                            cccgttTGTGAACTGCACCCCAAAAGTTGGACACTc      <  1:6329230‑M2/30‑1 (MQ=255)
                             gAGCATGTGAACTGCACCCCAAAAGTTGGACACTCa     <  1:3962557/36‑1 (MQ=255)
                              aGCATGTGAACTGCACCCCAAAAGTTGGACACTCaa    >  1:2146213/1‑36 (MQ=255)
                              aGCATGAGAACTGCACCACAAAAGTTGAACACTCaa    <  1:5299350/36‑1 (MQ=25)
                               gttTGTGAACTGCACCCCAAAAGTTGGACACTCAAc   >  1:1856683‑M2/4‑36 (MQ=255)
                               gttTGTGAACTGCACCCCAAAAGTTGGACACTCAAc   <  1:3167517‑M2/33‑1 (MQ=255)
                               gCATGTGAACTGCACCCCAAAAGTTGGACACTCAAc   <  1:6734111/36‑1 (MQ=255)
                               gCATGTGAACTGCACCCCAAAAGTTGGACACTCAAc   >  1:2944296/1‑36 (MQ=255)
                                ttTGTGAACTGCACCCCAAAAGTTGGACACTCAACg  >  1:3947342‑M2/3‑36 (MQ=255)
                                ttTGTGAACTGCACCCCAAAAGTTGGACACTCAACg  >  1:4117308‑M2/3‑36 (MQ=255)
                                cATGTGAACTGCACCCCAAAAGTTGGACACTCAACg  >  1:203569/1‑36 (MQ=255)
                                cATGTGAACTGCACCCCAAAAGTTGGACACTCAACg  >  1:4468366/1‑36 (MQ=255)
                                  |                                 
ATGGTGTCAGAGCGCCAAAAAAAACCGCCGAGCATGTGAACTGCACCCCAAAAGTTGGACACTCAACG  >  REL606/2332060‑2332127

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG