Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,544,352 | 0 | T→A | 12.0% | 1.5 ‑14.4 0.0 | 67 | 89 | xasA | predicted glutamate:gamma‑aminobutyric acid antiporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/11): ref base (45/11): total (45/22) | ||||||||||
Fisher's exact test strand distribution p-value = 5.49e-07 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAG > REL606/1544317‑1544387
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aTGAAAAGCCCGATGTTGCGAAGGTAGGGTCTTCAt < 1:5534617/36‑1 (MQ=255)
aTGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCAt < 1:3811205/36‑1 (MQ=255)
aTGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCAt < 1:1516234/36‑1 (MQ=255)
aTGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCAt < 1:2613586/36‑1 (MQ=255)
tGAAAAGCCCGCTGTTGCGAAGGTAGGGTATTCATa > 1:7624981/1‑36 (MQ=255)
tGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATa > 1:862975/1‑36 (MQ=255)
tGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATa > 1:5569898/1‑36 (MQ=255)
gAAAAGCCCGCTGTTTCGAAGGTAGGGTATTCATaa < 1:4163151/36‑1 (MQ=37)
gAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATaa > 1:7109437/1‑36 (MQ=255)
gAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATaa > 1:6463427/1‑36 (MQ=255)
gAAAAGCCAGATGTTGCGAAGGTAGGGTATTCATaa > 1:3254016/1‑36 (MQ=255)
aaaaGCCCGATGTTGCGAAGGTAGGGTATTCATaaa > 1:6447316/1‑36 (MQ=255)
aaaaGCCCGATGTTGCGAAGGTAGGGTATTCATaaa < 1:4674874/36‑1 (MQ=255)
aaaaGCCCGATGTTGCGAAGGTAGGGTATTCATaaa > 1:2677110/1‑36 (MQ=255)
aaaGCCCGATGTTGCGAAGGTAGGGTATTCATAAAc < 1:2703196/36‑1 (MQ=255)
aaaGCCCGATGTTGCGAAGGTAGGGTATTCATAAAc < 1:90688/36‑1 (MQ=255)
aaGCCCGATGTTGCGAAGGTAGGGTATTCATAAACa > 1:76876/1‑36 (MQ=255)
aGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAg > 1:5382661/1‑36 (MQ=255)
gCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGc < 1:757606/36‑1 (MQ=255)
gCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGc < 1:3030004/36‑1 (MQ=255)
ccggATGTTGCGAAGGTAGGGTATTCATAAACAGcc < 1:2400477/33‑1 (MQ=255)
cccGATGTTGCGAAGGTAGGGTATTCATAAACAGcc < 1:4978605/36‑1 (MQ=255)
ccGATGTTGCGAAGGTAGGGTATTCATAAACAGCCa > 1:5092364/1‑36 (MQ=255)
ccGATGTTGCGAAGGTAGGGTATTCATAAACAGCCa > 1:4095182/1‑36 (MQ=255)
cGATGTTGCGAAGGTAGGGTATTCATAAACAGCCAt > 1:1096187/1‑36 (MQ=255)
gATGTTGCGAAGGTAGGGTATTCATAAACAGCCAtt > 1:6210765/1‑36 (MQ=255)
aTGTTGCGAAGGTAGGGTATTCATAAACAGCCATTa > 1:5859324/1‑36 (MQ=255)
aTGTTGCGAAGGTAGGGTATTCATAAACAGCCATTa > 1:2232818/1‑36 (MQ=255)
gTTGCGAAGGTAGGGTATTCAAAAACAGCCATTAcc < 1:6627704/36‑1 (MQ=255)
ttGCGAAGGTAGGGTATTCATAAACAGCCATTACCa > 1:5011275/1‑36 (MQ=255)
ttGCGAAGGCAGGGTATTCATAAACAGCCATTACCa > 1:3275148/1‑36 (MQ=255)
cggCGAAGGTAGGGTATTCATAAACAGCCATTACCa > 1:7315721/3‑36 (MQ=255)
tGCGAAGGTAGGGTATTCATAAACAGCCATTACCAt > 1:118081/1‑36 (MQ=255)
tGCGAAGGTAGGGTATTCATAAACAGCCATTACCAt > 1:2128939/1‑36 (MQ=255)
tGCGAAGGTAGGGTATTCATAAACAGCCATTACCAt > 1:255619/1‑36 (MQ=255)
gggAAGGTAGGGTATTAATAACCAGCCATTACCATc < 1:3901637/34‑1 (MQ=37)
gaaaaGGTAGTTTATCAAAAAACAGCCATTACCATc < 1:3906414/33‑1 (MQ=9)
gCGAAGGTAGGGTATTCAAAAACAGCCATTACCATc < 1:6302080/36‑1 (MQ=255)
gCGAAGGTAGGGTATTAATAAACAGCCATTACCATc < 1:1602002/36‑1 (MQ=255)
ggAAGGTAGGGTATTCAAAAACAGCCATTACCATCg < 1:7391528/35‑1 (MQ=255)
gAAGGTAGGGTATTCATAAACAGCCATTACCATCGa > 1:1919803/1‑36 (MQ=255)
gAAGGTAGGGTATTCATAAACAGCCATTACCATCGa > 1:2232484/1‑36 (MQ=255)
gAAGGTAGGGTATTCATAAACAGCCATTACCATCGa > 1:4301880/1‑36 (MQ=255)
agggTAGGTTATTAAAAAACAGCCATTACCATCGAt < 1:734034/34‑1 (MQ=21)
agggTAGGGTATTAAAAAACAGCCATTACCATCGAt < 1:6618426/34‑1 (MQ=37)
aaGGTAGGTTATTCAAAAACAGCCATTACCATCGAt < 1:4206098/36‑1 (MQ=37)
aaGGTAGGGTATTCATAAACAGCCATTACCATCGAt > 1:6696690/1‑36 (MQ=255)
aGGTAGGTTATAAATAAACAGCCATTACCATCGATg < 1:7392788/36‑1 (MQ=21)
ggTAGGGTATTCATAAACAGCCATTACCATCGATGc > 1:7814873/1‑36 (MQ=255)
ttAGGTTATTAAAAAACAGCCATTACCATCGATGcc < 1:3025172/35‑1 (MQ=25)
ggaGGTTATTAAAAAACAGCCATTACCATCGATGcc < 1:1313123/34‑1 (MQ=21)
gTAGGGTATTCATAAACAGCCATTACTATCGCTGcc > 1:2483786/1‑36 (MQ=37)
tAGGGTATTCATAAACAGCCATTACCATCGATGCCg > 1:3837399/1‑36 (MQ=255)
aGGGTATTAAAAAACAGCCATTACCATCGATGCCGt < 1:5948551/36‑1 (MQ=37)
aGGGTATACAAAAACAGCCATTACCATCGATGCCGt < 1:7335230/36‑1 (MQ=37)
gggTATTCATAAACAGCCATTACCATCGATGCCGtt > 1:4229689/1‑36 (MQ=255)
ggTATTCATAAACAGCCATTACCATCGATGCCGTTa > 1:5714281/1‑36 (MQ=255)
gTATTCATAAACAGCCATTACCATCGATGCCGTTAt > 1:6295799/1‑36 (MQ=255)
gTATTCATAAACAGCCATTACCATCGATGCCGTTAt > 1:6790987/1‑36 (MQ=255)
gTATTCATAAACAGCCATTACCATCGATGCCGTTAt > 1:6871694/1‑36 (MQ=255)
gTATTCATAAACAGCCATTACCATCGATCACGTTAt > 1:3973870/1‑36 (MQ=37)
tATTCATAAACAGCCATTACCATCGATGCCGTTATg > 1:5666740/1‑36 (MQ=255)
aTTCATAAACAGCCATTACCATCGATGCCGTTATgg > 1:5534709/1‑36 (MQ=255)
aTTCATAAACAGCCATTACCATCGATGCCGTTATgg > 1:3400033/1‑36 (MQ=255)
tCATAAACAGCCATTACCATCGATGCCGTTATGGCa > 1:3366534/1‑36 (MQ=255)
cATAAACAGCCATTACCATCGATGCCGTTATGGCaa > 1:3298248/1‑36 (MQ=255)
cATAAACAGCCATTACCATCGATGCCGTTATGGCaa > 1:7858294/1‑36 (MQ=255)
aTAAACAGCCATTACCATCGATGCCGTTATGGCaaa > 1:2998812/1‑36 (MQ=255)
aTAAACAGCCATTACCATCGATGCCGTTATGGCaaa > 1:7811991/1‑36 (MQ=255)
aTAAACAGCCATTACCATCGATGCCGTTATGGCaaa > 1:1681685/1‑36 (MQ=255)
aTAAACAGCCATTACCATCGATGCCGTTATGGCaaa > 1:654851/1‑36 (MQ=255)
tAAACAGCCATTACCATCGATGCCGTTATGGCAAAg > 1:1725495/1‑36 (MQ=255)
tAAACAGCCATTACCATCGATGCCGTTATGGCAAAg > 1:6569457/1‑36 (MQ=255)
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ATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAG > REL606/1544317‑1544387
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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