Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,285,943 | G→T | 15.6% | A773E (GCA→GAA) | arcB ← | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,285,943 | 0 | G→T | 15.6% | 2.3 ‑4.2 ‑0.1 | 32 | 2318 | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (10/17): total (15/17) | ||||||||||
Fisher's exact test strand distribution p-value = 1.49e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.49e-01 |
GGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGC > REL606/3285911‑3285978
|
ggTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGcca < 1:3238215/36‑1 (MQ=255)
tCTAGCCGGGGTCATTTTTTAGTGGCTTTTGtcacc > 1:1241372/1‑36 (MQ=255)
tCTAGCCGGGGTCATTTTTTAGTGGCTTTTGccacc < 1:990461/36‑1 (MQ=255)
cTAGCCGGGGTCATTTTTTAGTGGCTTTTTtcaccc > 1:2829206/1‑36 (MQ=37)
aGCCGGAGTCATTTTTTAGTGGCTTTTGccacccac < 1:4440226/36‑1 (MQ=255)
gCCGGGGTCATTTTTTAGTGGCTTTTTCCACCCACg > 1:2485524/1‑36 (MQ=255)
gCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 1:1929573/1‑36 (MQ=255)
cGGGGTCATTTTTTAGTGTCTTTTGCCACCCACGCt > 1:2291174/1‑36 (MQ=255)
ggggTCATTTTTTAGTGGCTTTTTCCACCCCCGCtt > 1:5743524/1‑36 (MQ=37)
gggTCATTTTTTAGTGGCTTTTGCCACCCACGCttt < 1:3340404/36‑1 (MQ=255)
gTCATTTTTTAGTGGCTTTTTCCACCCACGCTTTCa > 1:7279541/1‑36 (MQ=255)
tCATTTTTTAGTGGCTTTTTCCACCCACGCTTTCAg > 1:7910456/1‑36 (MQ=255)
tCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg < 1:434227/36‑1 (MQ=255)
cATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGc < 1:3679107/36‑1 (MQ=255)
tttttAGTGGCTTTTGCCACCCACGCTTTCAGCACt < 1:1515741/36‑1 (MQ=255)
ttttAGTGGCTTTTGCCACCCACGCTTTCAGCACtt < 1:5329531/36‑1 (MQ=255)
tttAGTGGCTTTTGCCACCCACGCTTTCAGCACTTc < 1:3690205/36‑1 (MQ=255)
ttAGTGGCTTTTGCCACCCACGCTTTCCGCAATTCt > 1:3521372/1‑36 (MQ=37)
ttAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCt < 1:7885/36‑1 (MQ=255)
ttAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCt < 1:4113721/36‑1 (MQ=255)
tAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTa < 1:3138654/36‑1 (MQ=255)
aGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAc < 1:7199610/36‑1 (MQ=255)
gTGGCTTTTGCCACCCATGCTTTGAGCACTTCTAcg > 1:6165873/1‑36 (MQ=25)
gTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcg > 1:5920289/1‑36 (MQ=255)
gTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcg > 1:392448/1‑36 (MQ=255)
ggCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtc < 1:3596761/36‑1 (MQ=255)
gCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcg < 1:1658629/36‑1 (MQ=255)
cTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcgt < 1:911851/36‑1 (MQ=255)
ttGCCACCCACGCTTTCAGCACTTCTACGTCGTGAc < 1:5105332/36‑1 (MQ=255)
ttGCCACCCACGCTTTCAGCACTTCTACGTCGTGAc > 1:6995541/1‑36 (MQ=255)
tGCCACCCACGCTTTCAGCACTTCTACGTCGTGaag > 1:1092205/1‑34 (MQ=255)
tGCCACCCACGCTTTCAGCACTTCTACGTCGTGACg > 1:1344396/1‑36 (MQ=255)
gCCACCCACGCTTTCACCACTTCTACGTCGTGACGc > 1:6570829/1‑36 (MQ=255)
|
GGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGC > REL606/3285911‑3285978
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|