New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 553366 =10 (0.190)13 (0.250) 6/60 NT 44.1% coding (1526/2817 nt) ECB_00512 putative tail component of prophage
?REL606 4169224 = 23 (0.380)intergenic (+40/‑173) rpoC/htrC DNA‑directed RNA polymerase subunit beta'/heat shock protein

GCAGATTGAGCTGACACCGGGGTATTTTCAGATAACCGCCACGCCGCATCTTGCGGTTTATGATCCGACGG  >  REL606/553331‑553401
                                   |                                   
gCAGATTGAGCTGACACCGGGGTATTTTCAGATAAc                                     >  1:6641649/1‑36 (MQ=255)
gCAGATTGAGCTGACACCGGGGTATTTTCAGATAAc                                     >  1:1775185/1‑36 (MQ=255)
gCAGATTGAGCTGACACCGGGGTATTTTCAGATAAc                                     >  1:3735555/1‑36 (MQ=255)
aatgctctttccctaaactccccccataaaaaaacc                                     <  1:7329965‑M1/1‑1 (MQ=255)
aatgctctttccctaaactccccccataaaaaaacc                                     >  1:2625228‑M1/36‑36 (MQ=255)
aatgctctttccctaaactccccccataaaaaaacc                                     >  1:371049‑M1/36‑36 (MQ=255)
 atgctctttccctaaactccccccataaaaaaaccc                                    >  1:6943287‑M1/35‑36 (MQ=255)
  aGATTGAGCTGACACCGGGGTATTTTCAGATAACCg                                   >  1:6790393/1‑36 (MQ=255)
  aGATTGAGCTGACACCGGGGTATTTTCAGATAACCg                                   >  1:369629/1‑36 (MQ=255)
    ctctttccctaaactccccccataaaaaaacCCGcc                                 <  1:4167616‑M1/5‑1 (MQ=255)
     ttGAGCTGACACCGGGGTATTTTCAGATAACCGCCa                                >  1:4338377/1‑36 (MQ=255)
         gCTGACACCGGGGTATTTTCAGATAACCGCCAcgcc                            >  1:1306629/1‑36 (MQ=255)
              cacCGGGGTATTTTCAGATAACCGCCACGCCGCATc                       >  1:7306730/1‑36 (MQ=255)
                cgggggTATTTGAAAAAAACCGCCACGCCGCATCtt                     <  1:6291249/34‑1 (MQ=9)
                ccGGGGTATTTTCAGATAACCGCCACGCCGCATCtt                     >  1:5761253/1‑36 (MQ=255)
                  ggggTATTTTCAGATAACCGCCACGCCGCATCTTGc                   >  1:2630386/1‑36 (MQ=255)
                   gggTATTTTCAGATAACCGCCACGCCGCATCTTGCg                  >  1:3981500/1‑36 (MQ=40)
                   gggTATTTTCAGATAACCGCCACGCCGCATCTTGCg                  >  1:5641591/1‑36 (MQ=40)
                          taaaaaaacCCGCCACGCCGCATCTTGCGGTTTATg           >  1:1411725‑M1/10‑36 (MQ=255)
                          taaaaaaaaCCGCCACGCCGCATCTTGCGGTTTATg           >  1:1259593‑M1/10‑36 (MQ=255)
                           aaaaaaacCCGCCACGCCGCATCTTGCGGTTTATGa          >  1:6241526‑M1/9‑36 (MQ=255)
                             agaaacCCGCCACGCCGCATCTTGCGGTTTATGATc        >  1:695112‑M1/7‑36 (MQ=255)
                             aaaaacCCGCCACGCCGCATCTTGCGGTTTATGATc        >  1:5480154‑M1/7‑36 (MQ=255)
                             aaaaacCCGCCACGCCGCATCTTGCGGTTTATGATc        >  1:5397397‑M1/7‑36 (MQ=255)
                             aaaaacCCGCCACGCCGCATCTTGCGGTTTATGATc        >  1:380547‑M1/7‑36 (MQ=255)
                               aaacCCGCCACGCCGCATCTTGCGGTTTATGATCCg      >  1:6168679‑M1/5‑36 (MQ=255)
                               aaacCCGCCACGCCGCATCTTGCGGTTTATGATCCg      >  1:5837054‑M1/5‑36 (MQ=255)
                                gccCCGCCACGCCGCATCTTGCGGTTTATGATCCGa     >  1:2730510‑M1/4‑36 (MQ=255)
                                aacCCGCCACGCCGCATCTTGCGGTTTATGATCCGa     >  1:1181699‑M1/4‑36 (MQ=255)
                                 ccCCGCCACGCCGCATCTTGCGGTTTATGACCCGAc    >  1:686839‑M1/3‑36 (MQ=255)
                                 acCCGCCACGCCGCATCTTGCGGTTTATGATCCGAc    >  1:4387317‑M1/3‑36 (MQ=255)
                                   CCGCCACGCCGCATCTTGCGGTTTATGATCCGACgg  <  1:1109014‑M1/36‑1 (MQ=255)
                                   |                                   
GCAGATTGAGCTGACACCGGGGTATTTTCAGATAACCGCCACGCCGCATCTTGCGGTTTATGATCCGACGG  >  REL606/553331‑553401

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG