Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 348,984 G→T 23.5% L390F (TTG→TTT mhpT → predicted 3‑hydroxyphenylpropionic transporter

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL606348,9840G→T23.5% 2.6 ‑4.5 0.0311170mhpTpredicted 3‑hydroxyphenylpropionic transporter
Reads supporting (aligned to +/- strand):  new base (8/0):  ref base (11/12):  total (19/12)
Fisher's exact test strand distribution p-value = 1.16e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00

GGTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGATCACGAATACAGCCGTGCGCCG  >  REL606/348949‑349018
                                   |                                  
ggTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTtg                                    <  1:2355491/36‑1 (MQ=255)
  tATTCTTGTTGCTGGGTTGGCGGTGTTTATTTtgat                                  <  1:7265528/36‑1 (MQ=255)
     tCTTGTTGCTGGGTTGGCGGTGTTTATTTTTATTAg                               >  1:6571625/1‑36 (MQ=37)
      cTTGTTGCTGGGTTGGCGGTTTTTATTTTGATGAGc                              <  1:5401195/36‑1 (MQ=255)
      cTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGc                              <  1:1859730/36‑1 (MQ=255)
        tgttgCTGGGTTGGCGGTGTTTTTTTTTTTGAGCCg                            >  1:4987291/1‑36 (MQ=25)
        tgttgCTGGGTTGGCGGTGTTTATTTTGATGAGCCg                            >  1:2104742/1‑36 (MQ=255)
         gttgCTGGGTTGGCGGTGTTTTTTTTTATGAGCCgg                           >  1:1918705/1‑36 (MQ=37)
         gttgCTGGGTTGGCGGTGTTTTTTTTTATGAGCCgg                           >  1:4111924/1‑36 (MQ=37)
         gttgCTGGGTTGGCGGTGTTTTTTTTGATTAGGCgg                           >  1:1932065/1‑36 (MQ=25)
          ttgCTGGGTTGGCGGTGTTTATTTTGATGAGCCGga                          <  1:6991871/36‑1 (MQ=255)
            gCTGGGTTGGCGGTGTTTTTTTTTATTAGCCGggga                        >  1:5649315/1‑36 (MQ=19)
            gCTGGGTTGGCGGTGTTTATTTTGATGAGCCGgaga                        >  1:3738865/1‑36 (MQ=255)
             cTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGAt                       >  1:6511488/1‑36 (MQ=255)
              tGGGTGGGCGGTGTTTATTTTGATGAGCCGGAGATc                      <  1:553672/36‑1 (MQ=255)
               gggTTGGCGGTGTTTATTTTTATGAGCCGGAGATCa                     >  1:3103544/1‑36 (MQ=255)
               gggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCa                     <  1:782900/36‑1 (MQ=255)
                ggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCAc                    >  1:6794585/1‑36 (MQ=255)
                ggTTGGCGGTGTTTATTTTGATGAGCCGGAGATCAc                    >  1:3578840/1‑36 (MQ=255)
                 gTTGGCGGTCTTTATTTTTATTAGCCGGAGATCACg                   >  1:1686801/1‑36 (MQ=25)
                  ttGGCGGTGTTTATTTTTATGATCCGGAGATCACGa                  >  1:6413039/1‑36 (MQ=37)
                  ttGGCGGTGTTTATTTTGATGAGCCGGAGATCACGa                  <  1:7240221/36‑1 (MQ=255)
                  ttGGCGGTGTTTATTTTGATGAGCCGGAGATCACGa                  <  1:1266721/36‑1 (MQ=255)
                   tGGCGGTGTTTATTTTGATTAGCCGGAGATCACGaa                 <  1:7614055/36‑1 (MQ=255)
                       ggTGTTTATTTTGATGAGCCGGAGATCACGAATACa             >  1:4228009/1‑36 (MQ=255)
                         tgtTTATTTTGATGAGCCGGAGATCACGAATACAGc           <  1:3942463/36‑1 (MQ=255)
                           tttATTTTGATGAGCCGGAGATCACGAATACAGCCg         >  1:6166149/1‑36 (MQ=255)
                             tATTTTGATGAGCCGGAGATCACGAATACAGCCGTg       <  1:6505615/36‑1 (MQ=255)
                             tATTTTGATGAGCCGGAGATCACGAATACAGCCGTg       <  1:861150/36‑1 (MQ=255)
                              aTTTTGATGAGCCGGAGATCACGAATACAGCCGTgc      <  1:3826467/36‑1 (MQ=255)
                              aTTTTGATGAGCCGGAGATCACGAATAAAGCCGCgc      >  1:5293115/1‑36 (MQ=37)
                               ttttGATGAGCCTGAGATCACGAATACAGCCGTgcg     >  1:3343359/1‑36 (MQ=255)
                               ttttGATGAGCCGGAGATCACGAATACAGCCGGgcg     >  1:939824/1‑36 (MQ=255)
                                  tgatgaGCCGGAGATCACGAATACAGCCGTGCGCCg  >  1:552064/1‑36 (MQ=255)
                                   |                                  
GGTATTCTTGTTGCTGGGTTGGCGGTGTTTATTTTGATGAGCCGGAGATCACGAATACAGCCGTGCGCCG  >  REL606/348949‑349018

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 37 ≤  ATCG