Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 9,972 | T→G | 4.8% | N174T (AAC→ACC) | yaaH ← | conserved inner membrane protein associated with acetate transport |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 9,972 | 0 | T→G | 4.8% | 2.4 ‑0.5 ‑0.2 | 63 | 521 | yaaH | conserved inner membrane protein associated with acetate transport |
Reads supporting (aligned to +/- strand): new base (1/2): ref base (34/26): total (35/28) | ||||||||||
Fisher's exact test strand distribution p-value = 5.80e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.64e-01 |
CACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCACTG > REL606/9937‑10007
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cACCAATCGGCAGAACGGTGCGACCAAACTGCTCGt > 1:5712408/1‑36 (MQ=255)
aCCAATCGGCAGAACGGTGCGACCAAACTGCTCGtt > 1:3643824/1‑36 (MQ=255)
ccAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc > 1:4820465/1‑36 (MQ=255)
ccAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 1:4869725/36‑1 (MQ=255)
ccAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 1:1960707/36‑1 (MQ=255)
cAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCa < 1:3561371/36‑1 (MQ=255)
cAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCa < 1:5323245/36‑1 (MQ=255)
aaTCGGCAGAACGGTGCGACCAAACTGCTTGTTCAg > 1:944053/1‑36 (MQ=255)
aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg > 1:6048356/1‑36 (MQ=255)
aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg > 1:2778409/1‑36 (MQ=255)
aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg > 1:6208748/1‑36 (MQ=255)
aaTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAg > 1:6407607/1‑36 (MQ=255)
aTCGGCAGAACGGTGCGACCAAACTGCTCGTTCatt < 1:1844506/36‑3 (MQ=255)
aTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt > 1:5019646/1‑36 (MQ=255)
aTCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt < 1:4752155/36‑1 (MQ=255)
aTCGGCAGAACGGGGAGCCCAAACGACTCGTTCCGt > 1:7250244/1‑36 (MQ=12)
aTCGGCAGAACGGCGCGACCAAACTGCTAGTTCAGt > 1:8315767/1‑36 (MQ=37)
tCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTa > 1:3929556/1‑36 (MQ=255)
tCGGCAGAACGGTGCGACCAAACTGCTCGGTCAGTa < 1:6448051/36‑1 (MQ=255)
cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTAc > 1:2393815/1‑36 (MQ=255)
cGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTAc > 1:1222186/1‑36 (MQ=255)
ggCAGAACGGTGCGACCAAACTGCTCGTTCAGTACt > 1:3142682/1‑36 (MQ=255)
ggCAGAACGGTGCGACCAAACTGCTCGTTCAGTACt < 1:6635957/36‑1 (MQ=255)
ggCAGAACGGTGCGACCAAACTGCTCGTTCAGTACt < 1:8412138/36‑1 (MQ=255)
gCAGAACGGTGCGACCAAACTGCTCGTTCAGTACtt > 1:8442061/1‑36 (MQ=255)
aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa < 1:1995355/36‑1 (MQ=255)
aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa > 1:2003071/1‑36 (MQ=255)
aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa > 1:6997926/1‑36 (MQ=255)
aGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa > 1:3229791/1‑36 (MQ=255)
gAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAc > 1:4434961/1‑36 (MQ=255)
gAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAc > 1:5811163/1‑36 (MQ=255)
gAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAc > 1:6576068/1‑36 (MQ=255)
gAACGGTGCAACCAACCTGCTCCTTCAGTACTTCAc < 1:5477431/36‑1 (MQ=25)
aCGGTGCGACCAAACTGCTCGTTCAGTACTTCAccc < 1:2110180/36‑1 (MQ=255)
cGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCa < 1:3150175/36‑1 (MQ=255)
ggTGCGACCAAACTGCTCGTTCAGTACTTCACCCAt < 1:2444849/36‑1 (MQ=255)
ggTGCGACCAAACTGCTCGTTCAGTACTTCACCCAt < 1:7573488/36‑1 (MQ=255)
ggTGCGACCAAACTGCTCGTTCAGTACTTCACCCAt < 1:2181976/36‑1 (MQ=255)
gTGCGACCAAACTGCTCGTTCAGTACTTCACCCATc > 1:6847658/1‑36 (MQ=255)
gTGCGACCAAACTGCTCGTTCAGTACTTCACCCATc < 1:1361276/36‑1 (MQ=255)
gTGCGACCAAACTGCTCGTTCAGTACTTCACCCATc < 1:7502501/36‑1 (MQ=255)
gTGCGACCAAACTGCTCGTTCAGTACTTCACCCATc < 1:1086614/36‑1 (MQ=255)
gCGACCAAACTGCTCGTTCAGTACTTCACCCATCGc > 1:3281443/1‑36 (MQ=255)
gCGACCAAACTGCTCGTTCAGTACTTCACCCATCGc > 1:3481436/1‑36 (MQ=255)
cGACCAAACTGCTCGTTCAGTACTTCACCCATCGcc > 1:3178957/1‑36 (MQ=255)
cGACCAAACTGCTCGTTCAGTACTTCACCCATCGcc < 1:1345453/36‑1 (MQ=255)
cGACCAAACTGCTCGTTCAGTACTTCACCCATCGcc > 1:3023679/1‑36 (MQ=255)
gACCAAACTGCTCGTTCAGTACTTCACCCATCGCCa > 1:5300175/1‑36 (MQ=255)
gACCAAACTGCTCGTTCAGTACTTCACCCATCGCCa < 1:236558/36‑1 (MQ=255)
aCCAAACTGCTCGTTCAGTACTTCACCCATCGCCag > 1:2221855/1‑36 (MQ=255)
aCCAAACTGCTCGTTCAGTACTTCACCCATCGCCag > 1:5689976/1‑36 (MQ=255)
cAAACTGCTCGTTCAGTACTTCACCCATCGCCagat > 1:4014271/1‑36 (MQ=255)
aaaCTGCTCGTTCAGTACTTCACCCATCGCCagata < 1:7297892/36‑1 (MQ=255)
aaaCTGCTCGTTCAGTACTTCACCCATCGCCagata > 1:694693/1‑36 (MQ=255)
aaaCTGCTCGTTCAGTACTTCACCCATCGCCagata > 1:5708081/1‑36 (MQ=255)
aaaCTGCTCGTTCAGTACTTCACACCTCGCCatata < 1:2477179/36‑1 (MQ=37)
aCTGCTCGTTCAGTACTTCACCCATCGCCagataga < 1:6792277/36‑1 (MQ=255)
aCTGCTCGTTCAGTACTTCACCCATCGCCagataga > 1:662981/1‑36 (MQ=255)
cTGCTCGTTCAGTACTTCACCCATCGCCagatagat < 1:1357613/36‑1 (MQ=255)
cTGCTCGGTCAGTACTTCACCCATCGCCagatagat > 1:4197617/1‑36 (MQ=255)
cTCGTTCAGTACTTCACCCATCGCCAGATAGATTGc < 1:1343183/36‑1 (MQ=255)
cTCGGTCAGTACTTCACCCATCGCCAGATAGATTGc < 1:4190042/36‑1 (MQ=255)
tCGTTCATTACTTCACCCATCGCCAGATAGATTGCa < 1:3504595/36‑1 (MQ=255)
tCGTTCAGTACTTCATCCATCGCCAGATAGATTGCa > 1:8299418/1‑36 (MQ=255)
gTTCAGTACTTCACCCATCGCCAGATAGATTGCACt > 1:36949/1‑36 (MQ=255)
ttCAGTACTTCACCCATCGCCAGATAGATTGCACTg < 1:6628827/36‑1 (MQ=255)
ttCAGTACTTCACCCATCGCCAGATAGATTGCACTg < 1:8054188/36‑1 (MQ=255)
ttCAGTACTTCACCCATCGCCAGATAGATTGCACTg > 1:4341066/1‑36 (MQ=255)
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CACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCACTG > REL606/9937‑10007
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 24 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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