Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,806,810 | 0 | A→G | 7.4% | 0.5 ‑7.5 0.0 | 87 | 290 | uhpT | sugar phosphate antiporter |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (8/0): ref base (28/50): total (36/51) | ||||||||||
Fisher's exact test strand distribution p-value = 5.70e-04 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAA > REL606/3806775‑3806845
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taaaaaAAGCAGAGAGGATCAGCATGACCGGCAGGa < 1:5697566/33‑1 (MQ=25)
tACAAATAGCAGAGAGGATCAGCATGAACGGCAGGa > 1:1018306/1‑36 (MQ=255)
aCAAATAGCAGAGAGGATCAGCATGAACGGCAGGaa > 1:1839792/1‑36 (MQ=255)
cAAATAGCAGAGAGGATCAGCATGAACGGCAGGAAt < 1:6050263/36‑1 (MQ=255)
aaaTAGCAGAGAGGATCAGCATGAACGGCAGGGAtt > 1:5656411/1‑36 (MQ=255)
aaaTAGCAGAGAGGATCAGCATGAACGGCAGGGAtt > 1:6532676/1‑36 (MQ=255)
aaaTAGCAGAGAGGATCAGCATGAACGGCAGGAAtt > 1:6916200/1‑36 (MQ=255)
aaaTAGCAGAGAGGATCAGCATGAACGGCAGGAAtt < 1:6531384/36‑1 (MQ=255)
aaaTAGCAGAGAGGATCAGCATGAACGGCAGGAAtt < 1:6123806/36‑1 (MQ=255)
aaaTAGCAGAGAGGATCAGAATGAACGGCAGGAAtt < 1:5333255/36‑1 (MQ=255)
tAGCAGAGAGGATCAGCATGAACGGCAGGGATTTtt > 1:3918428/1‑36 (MQ=37)
tAGCAGAGAGGATCAGCATGAACGGCAGGAATTGtt < 1:3331613/36‑1 (MQ=255)
aGCAGAGAGGATCAGCATGAACGGCAGGCATTGttt < 1:3577408/36‑1 (MQ=255)
aGCAGAGAGGATCAGCATGAACGGCAGGAATTGttt < 1:6216709/36‑1 (MQ=255)
aGCAGAGAGGATCAGCATGAACGGCAGGAATTGttt > 1:6298644/1‑36 (MQ=255)
gCAGAGAGGATCAGCATGAACGGCAGGGATTTtttt > 1:3355736/1‑35 (MQ=37)
cAGAGAGGATCAGCATGAACGGCAGGGATTGTTTgg > 1:1893109/1‑36 (MQ=255)
cAGAGAGGATCAGCATGAACGGCAGGAATTGTTTgg > 1:1944336/1‑36 (MQ=255)
cAGAGAGGATCAGAATGAACGGCAGGAATTGTTTgg < 1:5636980/36‑1 (MQ=255)
agagagGATCAGCATGAACGGCAGGGATTGttttgg > 1:4376510/1‑33 (MQ=37)
agagagGATCAGCATGAACGGCAGGAATTGTTTGgt < 1:4227694/36‑1 (MQ=255)
agagagGATCAGCATGAACGGCAGGAATTGTTTGgt > 1:4775952/1‑36 (MQ=255)
agagagGATCAGCATGAACGGCAGGAATTGTTTGgt < 1:3510515/36‑1 (MQ=255)
agagagGATCAGCATGAACGGCAGGAATTGTTTGgt < 1:341657/36‑1 (MQ=255)
gagagGATCAGCATGAACGGCAGGAATTGTTTGgtg < 1:4004550/36‑1 (MQ=255)
gagagGATCAGCATGAACGGCAGGAATTGTTTGgtg < 1:4906075/36‑1 (MQ=255)
gagagGATCAGCATGAACGGCAGGAATTGTTTGgta < 1:2899885/36‑2 (MQ=255)
agagGATCAGCATGAACGGCAGGAATTGTTTGgtgt < 1:4939760/36‑1 (MQ=255)
agagGATCAGCATGAACGGCAGGAATTGTTTGgtgt > 1:1037445/1‑36 (MQ=255)
agagGATCAGCATGAACGGCAGGAATTGTTTGgtgt < 1:2198523/36‑1 (MQ=255)
agagGATCAGCATGAACGGCAGGAATTGTTTGgtgt > 1:3957218/1‑36 (MQ=255)
gagGATCAGCATGAACGGCAGGGATTGTTTTGTGtt > 1:4872317/1‑36 (MQ=37)
gagGATCAGCATGAACGGCAGGAATTGTTTGGTGtt > 1:3063818/1‑36 (MQ=255)
gggATCAGCATGAACGGGAGGAATTGTTTGGTGttt < 1:565603/35‑1 (MQ=255)
agGATCAGCATGAACGGCAGGAATTGTTTGGTGttt < 1:4932333/36‑1 (MQ=255)
agGATCAGCATGAACGGCAGGAATTGTTTGGTGttt < 1:5008412/36‑1 (MQ=255)
agGATCAGCATGAACGGCAGGAATTGTTTGGTGttt > 1:1203640/1‑36 (MQ=255)
ggATCAGCATGAACGGCAGGAATTGTTTGGTGtttt < 1:897220/36‑1 (MQ=255)
ggATCAGCATGAACGGCAGGAATTGTTTGGTGtttt < 1:3953805/36‑1 (MQ=255)
gATCAGCATGAACGGCAGGAATTGTTTGGTGttttt > 1:1712965/1‑36 (MQ=255)
gATCAGCATGAACGGCAGGAATTGTTTGGTGttttt < 1:5892826/36‑1 (MQ=255)
gATCAGCATGAACGGCAGGAATTGTTTGGTGttttt < 1:221715/36‑1 (MQ=255)
ataaGCATGAACGGCAGGAATTGTTTGGTGTTTTTg < 1:2799087/33‑1 (MQ=255)
aTCAGCATGAACGGCAGGGATTGTTTTGTGTTTTTg > 1:6230394/1‑36 (MQ=37)
aTCAGCATGAACGGCAGGAATTGTTTGGTGtttttt > 1:6766183/1‑35 (MQ=255)
aTCAGCATGAACGGCAGGAATTGTTTGGTGtttttt > 1:5330597/1‑35 (MQ=255)
aTCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTg < 1:1516090/36‑1 (MQ=255)
aTCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTg < 1:756713/36‑1 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGttttttc > 1:3438670/1‑34 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGttttttc > 1:1599704/1‑34 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc > 1:6664403/1‑36 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc < 1:1494639/36‑1 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc < 1:4707325/36‑1 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGc < 1:650701/36‑1 (MQ=255)
tCAGCATGAACGGCAGGAATTGTTTGGTGTTTTCGc < 1:7478627/36‑1 (MQ=255)
cAGCATGAACGGCAGGAATTGTTTGGTGTTTTTTcc > 1:1528434/1‑36 (MQ=255)
cAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGcc < 1:1641138/36‑1 (MQ=255)
cAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGcc < 1:1141348/36‑1 (MQ=255)
gCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt < 1:4033915/36‑1 (MQ=255)
gCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt > 1:2726859/1‑36 (MQ=255)
gCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt < 1:6917736/36‑1 (MQ=255)
gCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGt > 1:7243768/1‑36 (MQ=255)
cATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTc < 1:4796228/36‑1 (MQ=255)
aTGAACGGCAGGAATTGTTTGGTGTTTTTTCCGTCg > 1:4281237/1‑36 (MQ=255)
tGAACGGCAGGAATTGTTTGGTGTTTTTTCCGTCgg > 1:6798707/1‑36 (MQ=255)
tGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCgg > 1:202102/1‑36 (MQ=255)
ggAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCgg < 1:3389075/35‑1 (MQ=255)
gAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGc < 1:4221363/36‑1 (MQ=255)
aaCGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCg < 1:7052155/36‑1 (MQ=255)
aCGGCAGGAATTGTTTGGTGTTTTTTCCGTCGGCgt > 1:6441067/1‑36 (MQ=255)
aCGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgt < 1:5170224/36‑1 (MQ=255)
aCGGCAGGAATTGTTTGGTGTTATTGCCGTCGGCgt < 1:4314462/36‑1 (MQ=255)
cGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgta < 1:7417059/36‑1 (MQ=255)
cGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgta < 1:7501898/36‑1 (MQ=255)
cGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgta > 1:882413/1‑36 (MQ=255)
ggCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtag > 1:2235747/1‑36 (MQ=255)
ggCAGGAATTGTTCGGTGTTTTTGCCGTCGGCgtag > 1:6718807/1‑36 (MQ=255)
gCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtagt < 1:3877969/36‑1 (MQ=255)
gCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtagt < 1:1406457/36‑1 (MQ=255)
gCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtagt > 1:4475312/1‑36 (MQ=255)
gCAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtagt < 1:3494907/36‑1 (MQ=255)
cAGGAATTGTTTGGTGTTTTTGCCGTCGGCgtagta < 1:3589431/36‑1 (MQ=255)
aGGAATTGTTTGGTGTTTTTGCCGTCGGCGtagtag > 1:7151265/1‑36 (MQ=255)
aGGAATTGTTTGGTGTTTTTGCCGTCGGCGtagtag < 1:1899332/36‑1 (MQ=255)
aGGAATTGTTTGGCTTTTTTGCCTTCGGCGtggtag > 1:5333190/1‑36 (MQ=16)
ggAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAgg < 1:682540/36‑1 (MQ=255)
gAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGa > 1:6542938/1‑36 (MQ=255)
gAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGa < 1:6342706/36‑1 (MQ=255)
gAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGa < 1:3233800/36‑1 (MQ=255)
gAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGa < 1:5153618/36‑1 (MQ=255)
aaTTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGaa < 1:7356388/36‑1 (MQ=255)
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TACAAATAGCAGAGAGGATCAGCATGAACGGCAGGAATTGTTTGGTGTTTTTGCCGTCGGCGTAGTAGGAA > REL606/3806775‑3806845
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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