Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,764,698 | IS1 (–) +9 bp | 52.5% | intergenic (‑318/‑7) | ppsA ← / → ydiA | phosphoenolpyruvate synthase/hypothetical protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 241257 = | NA (NA) | 18 (0.310) | 18/66 | NT | 48.6% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 1764698 = | 19 (0.440) | intergenic (‑318/‑15) | ppsA/ydiA | phosphoenolpyruvate synthase/hypothetical protein | |||||
* | ? | REL606 | = 1764706 | 19 (0.470) | 24 (0.420) | 22/66 | NT | 55.8% | intergenic (‑326/‑7) | ppsA/ydiA | phosphoenolpyruvate synthase/hypothetical protein |
? | REL606 | = 1974039 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region |
TTATGCTTTCATAGAATTATGTCTGCATCACGGGAAG................................... > REL606/1764670‑1764706
...................................AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < REL606/1974039‑1974005
ATGCTTTCATAGAATTATGTCTGCATCACGGGAAGG > 1:4073314/1‑36 (MQ=1)
TGCTTTCATAGAATTATGTCTGCATCACGGGAAGGG > 1:3623005/1‑36 (MQ=1)
TTTCATAGAATTATGTCTGCATCACGGGAAGGGTAA > 1:2119132/1‑36 (MQ=1)
ATAGAATTATGTCTGCATCACGGGAAGGGTAATGAC < 1:5498435/36‑1 (MQ=1)
ATAGAATTATGTCTGCATCACGGGAAGGGTAATGAC > 1:3094612/1‑36 (MQ=1)
TAGAATTATGTCTGCATCACGGGAAGGGTAATGACT > 1:3385321/1‑36 (MQ=1)
AGAATTATGTCTGCATCACGGGAAGGGTAATGACTC < 1:1618273/36‑1 (MQ=1)
TTATGTCTGCATCACGGGAAGGGTAATGACTCCAAC > 1:2580310/1‑36 (MQ=1)
ATGTCTGCATCACGGGAAGGGTAATGACTCCAACTT > 1:2230274/1‑36 (MQ=1)
ATGTCTGCATCACGGGAAGGGTAATGACTCCAACTT < 1:7172494/36‑1 (MQ=1)
TGTCTGCATCACGGGAAGGGTAATGACTCCAACTTA < 1:2267589/36‑1 (MQ=1)
GTCTGCATCACGGGAAGGGTAATGACTCCAACTTAT > 1:5833057/1‑36 (MQ=32)
TCTGCATCACGGGAAGGGTAATGACTCCAACTTATT < 1:6777160/36‑1 (MQ=35)
TCTGCATCACGGGAAGGGTAATGACTCCAACTTATT < 1:1276842/36‑1 (MQ=35)
TGCATCACGGGAAGGGTAATGACTCCAACTTATTGA < 1:7906835/36‑1 (MQ=38)
TGCATCACGGGAAGGGTAATGACTCCAACTTATTGA < 1:2099107/36‑1 (MQ=38)
GCATCACGGGAAGGGTAATGACTCCAACTTATTGAT > 1:5501470/1‑36 (MQ=38)
CATCACGTGAAGGGTAATGACTCCAACTTATTGATA < 1:2342855/36‑1 (MQ=255)
CATCACGGGAAGGGTAATGACTCCAACTTATTGATA > 1:5297406/1‑36 (MQ=38)
TCACGGGAAGGGTAATGACTCCAACTTATTGATAGT > 1:4043803/1‑36 (MQ=38)
TCACGGGAAGGGTAATGACTCCAACTTATTGATAGT < 1:1975244/36‑1 (MQ=38)
ACGGGAAGGGTAATGACTCCAACTTATTGATAGTGT > 1:3577214/1‑36 (MQ=38)
GGGAAGGGTAATGACTCCAACTTATTGATAGTGTTT > 1:86446/1‑36 (MQ=38)
GGAAGGGTAATGACTCCAACTGATTGATAGTGTTTT < 1:2382221/36‑1 (MQ=255)
TTATGCTTTCATAGAATTATGTCTGCATCACGGGAAG................................... > REL606/1764670‑1764706
...................................AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT < REL606/1974039‑1974005
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 28 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
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