Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,314,009 | A→G | 26.7% | intergenic (‑380/+1) | yciG ← / ← trpA | hypothetical protein/tryptophan synthase subunit alpha |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,314,009 | 0 | A→G | 26.7% | 2.2 ‑3.7 0.0 | 27 | intergenic (‑380/+1) | yciG/trpA | hypothetical protein/tryptophan synthase subunit alpha |
Reads supporting (aligned to +/- strand): new base (8/0): ref base (10/9): total (18/9) | ||||||||||
Fisher's exact test strand distribution p-value = 2.58e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAA > REL606/1313976‑1314044
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tAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGAtt < 1:4244489/36‑1 (MQ=255)
tAAAAGTCCGCCAGCGGATCGGGCGGCTGTGGGAtt < 1:3257085/36‑1 (MQ=16)
aTGCCGCCAGCGGAACTGGCGGCTGTGGGGTTAACt > 1:6227052/1‑36 (MQ=255)
aTGCCGCCAGCGGAACTGGCGGCTGTGGGGTTAACt > 1:4747106/1‑36 (MQ=255)
gccgccAGCGGAACTGGCGGCTGTGGGGTTTACTgc > 1:5024701/1‑36 (MQ=25)
cgccAGCGGAACTGGCGGCTGTGGGATTAACTgcgc > 1:7472865/1‑36 (MQ=255)
cgccAGCGGAACTGGCGGCTATGGGGTTAAATgcgg > 1:1416614/1‑35 (MQ=21)
ccAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGt > 1:2359436/1‑36 (MQ=255)
cAGCGGAACTGGCGGCTGTGGGGTTAACTGCGCGTc > 1:3565226/1‑36 (MQ=255)
cAGCGGAACTGGCGGCTGTGGGGTTAACTGCGCGTc > 1:7231196/1‑36 (MQ=255)
cGGAACTGGCGGCTGTGGGATTAACTGCGCGTcgcc < 1:3206557/36‑1 (MQ=255)
cGGAACTGGCGGCTGTGGGATTAACTGCGCGTcgcc < 1:6806812/36‑1 (MQ=255)
ggAACTGGCGGCTGTGGGGTTTACTGCGCGTcgccg > 1:3204166/1‑36 (MQ=37)
ggAACTGGCGGCTGTGGGGTTAACTGCGCGTcgccc > 1:6253740/1‑35 (MQ=255)
gAACTGGCGGCTGTGGGATTAACTGCGCGTcggcgg > 1:7283510/1‑35 (MQ=255)
cTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCttt < 1:5804996/36‑1 (MQ=255)
cTGGCGGCTGTGGGATTAACTGCGCGTCGCAGCttt > 1:3300056/1‑36 (MQ=255)
tGGCGGCTGTGGGATTAACTTCGCGTCGCCGCTTTc > 1:288401/1‑36 (MQ=255)
tGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTc > 1:3636878/1‑36 (MQ=255)
ggcggcTGTGGGATTAACCGCGCGTCGCCGCTTTCa > 1:7439859/1‑36 (MQ=255)
ggcTGTGGGATTAACTGCGCGTCGCCGCTTTCATCg > 1:924423/1‑36 (MQ=255)
cTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGt < 1:5392514/36‑1 (MQ=255)
tgGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGt < 1:6394122/36‑1 (MQ=255)
tgGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGt < 1:3575391/36‑1 (MQ=255)
gggATTAACTGCGCGTCGCCGCTTTCATCGGTTGTa > 1:6323282/1‑36 (MQ=255)
ggATTAACTGCGCGTCGCCGCTTTCATCGGTTGTAc < 1:3050786/36‑1 (MQ=255)
ggATTAACTGCGCGTCGCCGCTTTCATCGGTTGTAc > 1:3134184/1‑36 (MQ=255)
aTTAACTGCGCGTCGCCGCTTTCATCGGTTGTACaa > 1:3437527/1‑36 (MQ=255)
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TAAAATGCCGCCAGCGGAACTGGCGGCTGTGGGATTAACTGCGCGTCGCCGCTTTCATCGGTTGTACAA > REL606/1313976‑1314044
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
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