Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,415,686 | C→A | 20.3% | intergenic (‑287/‑155) | kil ← / → sieB | inhibitor of ftsZ, killing protein/phage superinfection exclusion protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,415,686 | 0 | C→A | 20.3% | 3.6 ‑4.6 0.0 | 33 | intergenic (‑287/‑155) | kil/sieB | inhibitor of ftsZ, killing protein/phage superinfection exclusion protein |
Reads supporting (aligned to +/- strand): new base (0/7): ref base (14/11): total (14/19) | ||||||||||
Fisher's exact test strand distribution p-value = 1.05e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGC > REL606/1415653‑1415721
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aaCCGGAGGCGCACTCCCACCATTTAAATTTAACAg > 1:5182422/1‑36 (MQ=255)
aCCGGAGGCGCACTCCCACCAGTTAAATTTAACAGa > 1:2012827/1‑36 (MQ=255)
ccGGAGGCGCACTCCCACCATTTAAATTTAACAGaa > 1:4619992/1‑35 (MQ=255)
ccGGAGGCGCACTCCCACCATTTAAATTTAACAGAc < 1:603810/36‑1 (MQ=255)
ccGGAGGCGCACTCCCACCATTTAAATTTAACAGAc < 1:4309717/36‑1 (MQ=255)
ccGGAGGCGCACTCCAACCATTTAAATTTAACAGAc < 1:4597422/36‑1 (MQ=255)
cGGAGGCGCACTCCCACCCTTTAAATTTAACAGACa > 1:5855378/1‑36 (MQ=255)
cGGAGGCGCACTCCCACCATTTAAATTTAACAGACa < 1:7290682/36‑1 (MQ=255)
cGGAGGCGCACTCCCACCATTTAAATTTAACAGACa > 1:2424867/1‑36 (MQ=255)
cGGAGGCGCACTCCCACCATTTAAATTTAACAGACa > 1:1142933/1‑36 (MQ=255)
ggAGGCGCACTCCCACCATTTAAATTTAACAGACaa > 1:3667441/1‑36 (MQ=255)
gAGGCGCACTCCCACCATTTAAATTTAACAGACAAg < 1:3952955/36‑1 (MQ=255)
ggCGCACTCCCACAATTTAAATTTAACAGACAAGAc < 1:3559377/36‑1 (MQ=255)
gcgcACTCCCACCATTTAAATTTAACAGACAAGAcc < 1:7179623/36‑1 (MQ=255)
gcgcACTCCAACCATTTAAATTTAACAGACAAGAcc < 1:4941126/36‑1 (MQ=255)
gcACTCCCACCATTTAAATTTAACAGACAAGACCGa < 1:2492044/36‑1 (MQ=255)
gcACTCCCACCATTTAAATTTAACAGACAAGACCGa > 1:7008166/1‑36 (MQ=255)
cACTCCCACCATTTAAATTTAACAGACAAGACCGAc > 1:3604724/1‑36 (MQ=255)
cACTCCCACAATTTAAATTTAACAGACAAGACCGAc < 1:7179559/36‑1 (MQ=255)
cccACAATTTAAATTTAAAAGAAAAGACCGACTCtt < 1:7737179/36‑1 (MQ=25)
cgtccaTTCAAATTGCATACACAAGACCGACTCttt < 1:524807/33‑1 (MQ=255)
caccaTTTAAATTTAACAGACAAGACCGACTCTTTa > 1:1127324/1‑36 (MQ=255)
ttaaaattaaaAAGAAAAGACCGACTCTTTATGGat < 1:4678471/33‑1 (MQ=16)
ttaaatttaaCAGACAAGACCGACTCTTTATGGata > 1:2308318/1‑36 (MQ=255)
ttaaattaaaAAGAAAAGACCGACTCTTTATGGata < 1:6059627/36‑1 (MQ=25)
taaaatttaaCAGAAAAGACCGACTCTTTATGGata < 1:815297/34‑1 (MQ=38)
taaattaaaAAGAAAAGACCGACTCTTTATGGatat < 1:2732129/36‑1 (MQ=25)
aaaatttaaAAGAAAAGACCGACTCTTTATGGatat < 1:1149434/35‑1 (MQ=37)
aaaattaaaAAGAAAAGACCGACTCTTTATGGatat < 1:4841795/35‑1 (MQ=21)
aattaaaAAGAAAAGACCGACTCTTTATGGATATCg < 1:3441673/36‑1 (MQ=25)
ttaaCAGACAAGACCGACTCTTTATGGATATCGGaa > 1:7615692/1‑36 (MQ=255)
aCAGACAAGACCGACTCTTTATGGATATCGGAAATg > 1:4068328/1‑36 (MQ=255)
aCAGACAAGACCGACTCTTTATGGATATCAGAAAtc > 1:5956181/1‑35 (MQ=255)
cAGACAAGACCGACTCTTTATGGATATCGGAAACgc > 1:6271120/1‑36 (MQ=255)
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AACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGC > REL606/1415653‑1415721
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 18 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|