Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,424,370 | G→T | 22.6% | D68Y (GAT→TAT) | ECB_01344 → | conserved hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,424,370 | 0 | G→T | 22.6% | 4.6 ‑4.2 ‑0.0 | 17 | 202 | ECB_01344 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): new base (4/0): ref base (3/10): total (7/10) | ||||||||||
Fisher's exact test strand distribution p-value = 1.47e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.95e-01 |
AGCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAAGCCTGATGGA > REL606/1424338‑1424404
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aGCGAATGAATATGCCGTGGTGGGGCGGTTTTTATc > 1:4084546/1‑36 (MQ=12)
aGCGAATGAATATGCCGTGGTGGGGCGGTTTTGATc < 1:2565478/36‑1 (MQ=32)
tgaatATGCCGTGGTGGGGCGGTTTTGATCcgcgcg < 1:4269357/36‑1 (MQ=255)
aatATGCCGTGGTGGGGCGGTTTTGATCcgcgcgcg < 1:1779718/36‑1 (MQ=255)
ccGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGAt < 1:2111839/36‑1 (MQ=255)
cGTGGTGGGGCGGTTTTTATCCCCGCGCGGGGGGtg > 1:2228668/1‑36 (MQ=12)
gtggtgGGGCGGTTTTGATCCGCGCGCGTGGGAtgt < 1:3890016/36‑1 (MQ=255)
tggtggGGCGGTTTTTCTCCTCGCGCGTGGGGtgtg > 1:4563197/1‑36 (MQ=16)
tggGGCGGTTTTTTTCCCCGCCAGTGGGGTGTgggg > 1:2474731/1‑34 (MQ=2)
tggGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCa < 1:3337927/36‑1 (MQ=255)
tggGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCa < 1:1596716/36‑1 (MQ=255)
ggggCGGTTTTGATCCGCGCGCGTGGGATGTGGCaa < 1:2279540/36‑1 (MQ=255)
gCGGTTTTGATCCGCGCGCGTGGGATGTGGCAAGcc < 1:2974516/36‑1 (MQ=255)
gCGGTTTTGATCCGCGCGCGTGGGATGTGGCAAGcc < 1:449120/36‑1 (MQ=255)
ttttGATCCGCGCGCGTGGGATGTGGCAAGCCTGAt > 1:3712081/1‑36 (MQ=255)
ttGATCCGCGCGCGTGGGATGTGGCAAGCCTGATgg > 1:3079162/1‑36 (MQ=255)
tGATCCGCGCGCGTCGGATGTGGCAAGCCTGATGGa > 1:2670679/1‑36 (MQ=255)
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AGCGAATGAATATGCCGTGGTGGGGCGGTTTTGATCCGCGCGCGTGGGATGTGGCAAGCCTGATGGA > REL606/1424338‑1424404
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
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