Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,909,619 | +G | 6.9% | coding (149/840 nt) | hdfR ← | transcriptional regulator HdfR |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,909,619 | 1 | .→G | 6.9% | 2.8 ‑1.6 ‑0.0 | 29 | coding (149/840 nt) | hdfR | transcriptional regulator HdfR |
Reads supporting (aligned to +/- strand): new base (2/0): ref base (11/16): total (13/16) | ||||||||||
Fisher's exact test strand distribution p-value = 1.92e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 |
CACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.GG.GTGAAAAGGTTCACACCCAGTTGATTTTCCAG > REL606/3909584‑3909653
|
cACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGc < 1:983098/36‑1 (MQ=255)
cACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGc < 1:1322784/36‑1 (MQ=255)
cACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGc < 1:1749228/36‑1 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTTTGTGGC.g > 1:4992099/1‑36 (MQ=255)
aCCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.g > 1:5705192/1‑36 (MQ=255)
cGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.gg.g < 1:2348839/36‑1 (MQ=255)
aGCGGTTAAACGGATATTGTTTCTGTGGC.GG.GTGaa < 1:4360451/36‑1 (MQ=255)
gCGGTTAAACGGATATTGTTTCTGTGGC.GG.GTGaaa < 1:756228/36‑1 (MQ=255)
gTTAAACGGATATTGTTTCTGTGGC.GG.GTGGAAAgg > 1:1047979/1‑36 (MQ=255)
gTTAAACGGATATTGTTTCTGTGGC.GG.GTGAAAAgg < 1:1790727/36‑1 (MQ=255)
ttAAACGGCTATTGTTTCTGTGGC.GG.GTGAAAAGGt < 1:4237900/36‑1 (MQ=255)
ttAAACGGATATTGTTTCTGTGGC.GG.GGGGAAAAGt > 1:3335453/1‑36 (MQ=25)
ttAAACGGATATTGTTTCTGTGGC.GG.GGGGAAAAGt > 1:2663704/1‑36 (MQ=25)
tAAACGGATATTGTTTCTGTGGCGGG.GGGAAAAGGt > 1:3387531/1‑36 (MQ=25)
tAAACGGATATTGTTTCTGTGGC.GGCGGGAAAAgtt > 1:4728953/1‑34 (MQ=21)
tAAACGGATATTGTTTCTGTGGC.GG.GGGGAAAAGtt > 1:4663695/1‑36 (MQ=25)
cGGATATTGTTTCTGTGGC.GG.GTGAAAAGGTTcaca < 1:1720539/36‑1 (MQ=255)
cGGATATTGTTTCTGTGGC.GG.GGGGAAAAGTTtaca > 1:4852760/1‑36 (MQ=19)
ggATATTGTTTCTGTGGCGGG.GTGAAAAGGTTccac > 1:3349363/1‑33 (MQ=25)
ggATATTGTTTCTGTGGC.GG.GTGAAAAGGTTCacac < 1:5263008/36‑1 (MQ=255)
gATATTGTTTCTGTGGC.GG.GTGAAAAGGTTCACAcc < 1:2767218/36‑1 (MQ=255)
atTGTTTCTGTGGC.GG.GTGAAAAGGTTCACACCCAg < 1:1000607/36‑1 (MQ=255)
atTGTTTCTGTGGC.GG.GTGAAAAAGGTTACAccccg > 1:5381391/1‑34 (MQ=18)
ttGTTTCTGTGGC.GG.GTGAAAAGGTTCACACCCAGt < 1:4054931/36‑1 (MQ=255)
ttGTTTCTGTGGC.GG.GTGAAAAGGTTCACACCCAGt < 1:5005392/36‑1 (MQ=255)
tGTTTCTGTGGC.GG.GGGGAAAAGTTCTCACCCCGtt > 1:2724418/1‑36 (MQ=16)
gTTTCTGTGGC.GG.GTGGAAAGGGTCACACCCCGttt > 1:1498180/1‑35 (MQ=25)
ttCTGTGGC.GG.GTGAAAAGGTTCACACCCAGTTGAt > 1:5458245/1‑36 (MQ=255)
ttCTGTGGC.GG.GTGAAAAGGTTCACACCCAGTTGAt < 1:5864125/36‑1 (MQ=255)
cTGTGGC.GG.GTGAAAAGGTTCACACCCAGTTGAttt < 1:4001072/36‑1 (MQ=255)
tgtgGC.GG.GTGAAAAGGTTCACACCCAGTTGAtttt < 1:5557209/36‑1 (MQ=255)
tgGC.GG.GTGAAAAGGTTCACACCCAGTTGATTTTcc < 1:3724488/36‑1 (MQ=255)
ggC.GG.GTGAAAAGGTTCACACCCAGTTGATTTTCCa < 1:4060708/36‑1 (MQ=255)
ggC.GG.GTGAAAAGGTTCACACCCAGATGGTTTTcct > 1:3831694/1‑35 (MQ=37)
gC.GG.GTGAAAAGGTTCACACCCAGTTGATTTTCCAg < 1:4084987/36‑1 (MQ=255)
|
CACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC.GG.GTGAAAAGGTTCACACCCAGTTGATTTTCCAG > REL606/3909584‑3909653
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 16 ≤
ATCG
< 29 ≤
ATCG
< 37 ≤
ATCG
|