New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241691 =0 (0.000)60 (1.030) 36/66 NT 100% noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 137 total aligned reads displayed.

GAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893519‑3893588
                                       |                                  
gtttaactgtccaactttttggggtcagtaC..A..GACt                                    <  1:5109585‑M1/6‑1 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACt                                    >  1:4248728/1‑36 (MQ=255)
gAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACt                                    >  1:6077975/1‑36 (MQ=255)
  aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt                                  <  1:7813515/36‑1 (MQ=255)
  aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt                                  >  1:2176603/1‑36 (MQ=255)
  aCTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGt                                  <  1:2776400/36‑1 (MQ=255)
  aCTGGGTACTCAGGTCGAAATCTAACACC..A..GACTGt                                  <  1:2524519/36‑1 (MQ=255)
   cTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTa                                 >  1:4729795/1‑36 (MQ=255)
    cgtgcgcaacaaccgtcttccggagactgtcatact                                    <  1:2630816‑M2/1‑1 (MQ=255)
    cgtgcgcaacaaccgtcttccggagactgtcatact                                    <  1:7251152‑M2/1‑1 (MQ=255)
     gtgcgcaacaaccgtcttccggagactgtcatactg                                   <  1:1215124‑M2/2‑1 (MQ=255)
     gtgcgcaacaaccgtcttccggagactgtcatactg                                   >  1:2285436‑M2/35‑36 (MQ=255)
      tgcgcaacaaccgtcttccggagactgtcatactgt                                  >  1:1973492‑M2/34‑36 (MQ=255)
      tgcgcaacaaccgtcttccggagactgtcatactgt                                  <  1:4072856‑M2/3‑1 (MQ=255)
      ggTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTg                              <  1:2925741/36‑1 (MQ=255)
       gcgcaacaaccgtcttccggagactgtcatactcgt                                 <  1:4940494‑M2/4‑4 (MQ=255)
       gcgcaacaaccgtcttccggagactgtcatacggta                                 >  1:8438010‑M2/33‑36 (MQ=255)
       gTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGc                             >  1:1858315/1‑36 (MQ=255)
        tACTCAGGTCGAAATCTAACGCC..AG.GACTGTACTGc                             <  1:5999114/36‑1 (MQ=37)
        tACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCa                            <  1:7968813/36‑1 (MQ=255)
        tACTCAGGTAGAAATCTATCGCA..A..GACTGTACTGCa                            >  1:1452899/1‑36 (MQ=25)
        cgcaacaaccgtcttccggagactgtcatactgtac                                <  1:3912038‑M2/5‑1 (MQ=255)
        cgcaacaaccgtcttccggagactgtcatactgtac                                <  1:4400301‑M2/5‑1 (MQ=255)
        cgcaacaaccgtcttccggagactgtcatactgtac                                <  1:3221963‑M2/5‑1 (MQ=255)
         aCTCAGGTCGAAATCTAACGCC..AGGGACTGTACTGc                             <  1:1355945/36‑1 (MQ=25)
         aCTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCAc                           <  1:7519249/36‑1 (MQ=255)
         aCTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCAc                           <  1:6850951/36‑1 (MQ=255)
          caacaaccgtcttccggagactgtcatactgtactg                              >  1:3171820‑M2/30‑36 (MQ=255)
          caacaaccgtcttccggagactgtcatactgtactg                              <  1:3436754‑M2/7‑1 (MQ=255)
           caactttttggggtcagtaC..A..GACTGTACTGCAccc                         >  1:7595546‑M1/20‑36 (MQ=255)
           aacaaccgtcttccggagactgtcatacTGTACTGc                             <  1:6507977‑M2/8‑1 (MQ=255)
            acaaccgtcttccggagactgtcatacTGTACTGCa                            >  1:3625632‑M2/28‑36 (MQ=255)
            acaaccgtcttccggagactgtcatacTGTACTGCa                            >  1:501872‑M2/28‑36 (MQ=255)
            acaaccgtcttccggagactgtcatacTGTACTGCa                            >  1:1411534‑M2/28‑36 (MQ=255)
             caaccgtcttccggagactgtcatacTGTACTGCAc                           >  1:6433966‑M2/27‑36 (MQ=255)
             caaccgtcttccggagactgtcatacTGTACTGCAc                           >  1:7373221‑M2/27‑36 (MQ=255)
             aGGCCGAAATCTAACGCC..A..GACTGTACTGCACCCAt                       <  1:3467933/36‑1 (MQ=255)
               gTCGAAATCTAACGCC..A..GACTGTACTGCACCCAttt                     >  1:1596533/1‑36 (MQ=255)
               gTCGAAATCAAACGCC..A..GACTGTACTGCACCCAttt                     <  1:2349551/36‑1 (MQ=255)
               accgtcttccggagactgtcatacTGTACTGCAccc                         >  1:429753‑M2/25‑36 (MQ=255)
               accgtcttccggagactgtcatacTGTACTGCAccc                         >  1:2258054‑M2/25‑36 (MQ=255)
                 cgtcttccggagactgtcatacTGTACTGCACCCAt                       <  1:579000‑M2/14‑1 (MQ=255)
                 cGAAATCTAACGCC..A..GACTGTACTGCACCCATTttg                   <  1:5766651/36‑1 (MQ=255)
                   tcttccggagactgtcatacTGTACTGCACCCAttt                     <  1:1581075‑M2/16‑1 (MQ=255)
                   aaaTCTAACGCC..A..GACTGTACTGCACCCATTttgtt                 >  1:2436293/1‑36 (MQ=255)
                   aaaTCTAACGCC..A..GACTGTACTGCACCCATTttgtt                 <  1:8398735/36‑1 (MQ=255)
                    cttccggagactgtcatacTGTACTTCACCCAtttt                    >  1:8286212‑M2/20‑36 (MQ=255)
                    cttccggagactgtcatacTGTACTGCACCCAtttt                    <  1:6907313‑M2/17‑1 (MQ=255)
                    cttccggagactgtcatacTGTACTGCACCCAtttt                    <  1:8407549‑M2/17‑1 (MQ=255)
                    aaTCTAACGCCAGA..GACTGTACTGCACCCATTttgt                  <  1:6215601/36‑1 (MQ=17)
                     ttcgggagactgtcatacTGTACTGCACCCATTttg                   <  1:2164885‑M2/18‑1 (MQ=255)
                     ttccggagactgtcatacTGTACTGCACCCATTttg                   >  1:890350‑M2/19‑36 (MQ=255)
                     gggtcagtaC..A..GACTGTACTGCACCCATTTTGTTgg               <  1:2817926‑M1/27‑1 (MQ=255)
                     aTCTAACGCC..A..GACTGTACTGCACCCATTTTGTTgg               >  1:4831787/1‑36 (MQ=255)
                     aTCTAACGCC..A..GACTGTACTGCACCCATTTTGTTgg               <  1:232999/36‑1 (MQ=255)
                      tccggagactgtcatacTGTACTGCACCCATTttgt                  >  1:8039210‑M2/18‑36 (MQ=255)
                      tccggagactgtcatacTGTACTGCACCCATTttgt                  >  1:386620‑M2/18‑36 (MQ=255)
                      tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa              <  1:4853880/36‑1 (MQ=255)
                      tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa              >  1:3107208/1‑36 (MQ=255)
                      tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa              >  1:6850058/1‑36 (MQ=255)
                      tCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGa              >  1:5388018/1‑36 (MQ=255)
                       cTAATGCC..A..GACTGTACTGCACCCATTTTGTTGGAc             <  1:8263360/36‑1 (MQ=255)
                       cTAACGCC..A..GACTGTACTGCGCCCATTTTGTTGGAc             <  1:356076/36‑1 (MQ=255)
                         ggagactgtcatacTGTACTGCACCCATTTTGTTgg               >  1:5386384‑M2/15‑36 (MQ=255)
                         aaCGCC..A..GACTGTACTGCACCCATTTTGTTGGACGa           <  1:3519170/36‑1 (MQ=255)
                          aCGCC..A..GACTGTACTGCACCCATTTTGTTGGACGAt          <  1:1074364/36‑1 (MQ=255)
                           agactgtcatacTGTACTGCACCCATTTTGTTGGAc             <  1:3846541‑M2/24‑1 (MQ=255)
                            gactgtcatacTGTACTGCACCCATTTTGTTGGACg            <  1:572667‑M2/25‑1 (MQ=255)
                            gactgtcatacTGTACTGCACCCATTTTGTTGGACg            >  1:3618417‑M2/12‑36 (MQ=255)
                            gCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGa        <  1:7201701/36‑1 (MQ=255)
                            ccc..A..GACTGTACTACACCCATTTTGTTGGACGATGa        <  1:7802520/35‑1 (MQ=255)
                             cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa       >  1:3602261/1‑36 (MQ=255)
                             cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa       >  1:5247368/1‑36 (MQ=255)
                             cc..A..GACTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:4780760/36‑1 (MQ=255)
                              ctgtcatacTGTACTGCACCCATTTTGTTGGACGAt          <  1:2091491‑M2/27‑1 (MQ=255)
                              ctgtcatacTGTACTGCACCCATTTTGTTGGACGAt          <  1:4488874‑M2/27‑1 (MQ=255)
                              ctgtcatacTGTACTGCACCCATTTTGTTGGACGAt          <  1:421369‑M2/27‑1 (MQ=255)
                              ctgtcatacTGTACTGCACCCATTTTGTTGGACGAt          <  1:497472‑M2/27‑1 (MQ=255)
                              cagA..GACTGTACTGCACCCATTTTGTTGGACGATGa        <  1:4123569‑M1/33‑1 (MQ=255)
                              C..A..GACTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:1535233‑M1/1‑36 (MQ=255)
                               tgtcatacTGTACTGCACCCATTTTGTTGGACGATg         <  1:4716566‑M2/28‑1 (MQ=255)
                               tgtcatacTGTACTGCACCCATTTTGTTGGACGATg         <  1:7530457‑M2/28‑1 (MQ=255)
                                 tcatacTGTACTGCACCCATTTTGTTGGACGATGaa       >  1:881305‑M2/7‑36 (MQ=255)
                                 A..GACTGTACTGCACCCATTTTGTTGGACGATTAAAt     >  1:2878227‑M1/1‑36 (MQ=255)
                                  tcaaCTTTACTGCTCCCATTTTGTTGGACGATGaaa      <  1:3049139/33‑1 (MQ=11)
                                  catacTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:5661151‑M2/31‑1 (MQ=255)
                                   gctcTGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:7742014‑M2/32‑1 (MQ=255)
                                   gGACTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:1419449‑M1/2‑36 (MQ=255)
                                   caacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:2149401‑M2/5‑36 (MQ=255)
                                   caacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:4034087‑M2/5‑36 (MQ=255)
                                   atacTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:7656634‑M2/5‑36 (MQ=255)
                                    tacTGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:2657714‑M2/4‑36 (MQ=255)
                                    GACTGTACTGCACCCATTTTGTTGGACGATGAAATg    <  1:7756266‑M1/36‑1 (MQ=255)
                                     acTGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:7927751‑M2/3‑36 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:2406975‑M2/2‑36 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:6600577‑M2/35‑1 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:3506575‑M2/35‑1 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:636579‑M2/2‑36 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:5337818‑M2/2‑36 (MQ=255)
                                      cTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:2661843‑M2/35‑1 (MQ=255)
                                       |                                  
GAACTGGGTACTCAGGTCGAAATCTAACGCC..A..GACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893519‑3893588

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG