Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,647,291 | A→T | 14.3% | intergenic (‑52/+269) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,647,291 | 0 | A→T | 14.3% | 3.6 ‑3.1 ‑0.0 | 34 | intergenic (‑52/+269) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (13/16): total (18/16) | ||||||||||
Fisher's exact test strand distribution p-value = 4.65e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.13e-01 |
CGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTCTTTTGGTAAAGAAAATGTTATACATTTGTT > REL606/2647257‑2647325
|
tgTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTAt < 1:345684/35‑1 (MQ=255)
cGTATTCCGATGCTTTTGCCGGTCGCTTTTGTTTAt < 1:2656940/36‑1 (MQ=38)
cGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTAt < 1:5601209/36‑1 (MQ=255)
gTAATCCGATGCTTTTGTCGGTCCCTTTTTTTTTtt > 1:2508677/1‑36 (MQ=37)
aTCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTCt < 1:4830235/36‑1 (MQ=255)
tCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTCtt < 1:169145/36‑1 (MQ=255)
ccGATGCTTTTGTCGGTCGCTTTTTTTTTTTTTttt > 1:4389541/1‑36 (MQ=25)
ccGATGCTTTTGTCGGTCGCTTTTGTTTATTTTttt > 1:262169/1‑36 (MQ=255)
cGATGCTTTTGTCGGTCGCTTTTTTTTTTTTTtttt > 1:4564070/1‑36 (MQ=25)
gATGCTTTTGTCGGTCGCTTTTTTTTTTTTTttttt > 1:1251855/1‑35 (MQ=21)
gATGCTTTTGTCGGTCGATTTTTTTTTTTTTttttt > 1:4709398/1‑35 (MQ=19)
aTGCTTTTGTCGGTCGCTTTTTTTTATTTTtttttt > 1:2643057/1‑34 (MQ=25)
aTGCTTTTGTCGGTCGCTTTTGTTTATTTCTTTTgg < 1:1912475/36‑1 (MQ=255)
aTGCTTTTGTCGGCCGCTTTTTTTTATTTTtttttt > 1:1701451/1‑34 (MQ=21)
tGCTTTTGTCGGTCGATTTTGTTTATTTCttttttt > 1:1238455/1‑33 (MQ=37)
ggtcgCTTTTGTTTATTTCTTTTGTTAAAGAAAATg > 1:431998/1‑36 (MQ=255)
ggtcgCTTTTGTTTATTTCTTTTGTTAAAGAAAATg > 1:19473/1‑36 (MQ=255)
ggtcgCTTTTGTTTATTTCTTTTGGTAAAGAAAATg > 1:4816371/1‑36 (MQ=255)
gtcgCTTTTGTTTATTTCTTTTGGTAAAGAAAATGt < 1:4115335/36‑1 (MQ=255)
gtcgCTTTTGTTTATTTCTTTTGGTAAAGAAAATGt < 1:4609579/36‑1 (MQ=255)
cgCTTTTGTTTATTTCTTTTGGTAAAGAAAATGTta < 1:931920/36‑1 (MQ=255)
gCTTTTGTTTATTTCTTTTGGTAAAGAAAATGTtat < 1:1255458/36‑1 (MQ=255)
gCTTTTGTTTATTTCTTTTGGTAAAGAAAATGTtat > 1:2379489/1‑36 (MQ=255)
ttttGTTTATTTCTTTTGGTAAATAAAATGTTATAc > 1:5776790/1‑36 (MQ=255)
tttGTTTATTTCTTTTGGTAAAGAAAATGTTATACa < 1:570820/36‑1 (MQ=255)
tGTTTATTTCTTTTGGTAAAGAAAATGTTATACAtt > 1:4724641/1‑36 (MQ=255)
tGTTTATTTCTTTTGGTAAAGAAAATGTTATACAtt < 1:2170343/36‑1 (MQ=255)
tGTTTATTTCTTTTGGTAAAGAAAATGTTATACAtt < 1:3413940/36‑1 (MQ=255)
gTTTATTTCTTTTGGTAAAGAAAATGTTATACAttt < 1:2453577/36‑1 (MQ=255)
tttATTTCTTTTGGTAAAGAAAATGTTATACAtttt > 1:2725822/1‑35 (MQ=255)
ttATTTCTTTTGGTAAAGAAAATGTTATACATttgt > 1:3926054/1‑36 (MQ=255)
ttATTTCTTTTGGTAAAGAAAATGTTATACATttgt < 1:383422/36‑1 (MQ=255)
tATTTCTTTTGGTAAAGAAAATGTTATACATttgtt < 1:4066459/36‑1 (MQ=255)
tATTTCCTTTGGTAAAGAAAATGTTATACATttgtt > 1:2726634/1‑36 (MQ=255)
|
CGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTCTTTTGGTAAAGAAAATGTTATACATTTGTT > REL606/2647257‑2647325
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 33 ≤
ATCG
< 37 ≤
ATCG
|