breseq  version 0.24  revision cd15a9d216e1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6064,581,9660C→A15.1% 7.3 ‑18.5 ‑0.0981075tsrmethyl‑accepting chemotaxis protein I, serine sensor receptor
*REL6063,605,1720A→T11.5% 7.1 ‑10.1 0.082895yhjEpredicted transporter
*REL6064,311,0271.→A 6.4% 4.4 ‑3.4 0.047coding (960/1092 nt)basSsensory histidine kinase in two‑component regulatory system with BasR
*REL6063,893,5501.→G 2.9% 4.0 0.0 ‑0.570intergenic (+5/‑51)kup/insJ‑5potassium transporter/IS150 hypothetical protein
*REL6063,351,1820A→C100.0% 3.3 4intergenic (+96/+133)yhdZ/rrfFpredicted amino‑acid transporter subunit/5S ribosomal RNA
*REL6063,190,6530A→G 7.8% 1.4 ‑9.7 0.076328yhaOpredicted transporter
*REL6063,485,8930G→T10.7% 1.4 ‑10.9 0.077787rtcBhypothetical protein
*REL6063,269,6450T→A 6.7% 1.1 ‑4.4 ‑0.087702ispBoctaprenyl diphosphate synthase
*REL6064,383,4600G→T10.0% 1.1 ‑7.9 0.079619purAadenylosuccinate synthetase
*REL6061,627,3840C→A 8.4% 1.0 ‑10.5 0.0741591ydfEpredicted protein
*REL6061,122,7000T→C 8.3% 0.9 ‑5.8 0.090811mdoCglucans biosynthesis protein
*REL6064,201,9490G→A 4.6% 0.9 ‑0.5 ‑0.165611iclRDNA‑binding transcriptional repressor
*REL6061,485,4530A→G 7.9% 0.8 ‑6.0 0.074582ydcVpredicted spermidine/putrescine transporter subunit
*REL6063,280,8840C→A 8.5% 0.8 ‑2.7 0.077933rpoNDNA‑directed RNA polymerase subunit N
*REL6064,607,9970T→C 6.0% 0.8 ‑2.2 ‑0.064535deoAthymidine phosphorylase
*REL6063,806,8100A→G 7.4% 0.5 ‑7.5 0.087290uhpTsugar phosphate antiporter
*REL6064,174,7460T→C 3.6% 0.4 ‑2.6 ‑0.784965thiCthiamine biosynthesis protein ThiC
*REL6062,820,0050G→T 8.8% 0.3 ‑10.1 0.071112xniexonuclease IX
*REL6064,159,0850C→A 9.6% 0.3 ‑11.5 0.068596rplA50S ribosomal protein L1
*REL6063,254,4920G→A 6.6% 0.2 ‑5.1 0.086622argGargininosuccinate synthase
*REL6063,545,8110A→T 6.7% 0.2 ‑8.4 0.0661457nikAnickel transporter subunit
*REL606573,2020T→G100.0% 0.1 4287ECB_00530conserved hypothetical protein
*REL6062,774,9970G→T100.0% 0.1 5316insK‑3IS150 putative transposase
*REL6063,398,6110G→T100.0% 0.1 4624tufprotein chain elongation factor EF‑Tu (duplicate of tufB)
*REL6063,716,0990A→T10.4% 0.1 ‑10.8 0.0903109ECB_03460putative adhesin
*REL606572,4400G→T100.0% 0.0 31049ECB_00530conserved hypothetical protein
*REL606429,5480C→A100.0% ‑0.1 1intergenic (+143/+127)clpX/insL‑2ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186
*REL606429,5490C→A100.0% ‑0.1 1intergenic (+144/+126)clpX/insL‑2ATP‑dependent protease ATP‑binding subunit/putative transposase insL for insertion sequence IS186
*REL606430,1090T→C100.0% ‑0.1 1679insL‑2putative transposase insL for insertion sequence IS186
*REL606430,1570T→G100.0% ‑0.1 1631insL‑2putative transposase insL for insertion sequence IS186
*REL606430,1670C→A100.0% ‑0.1 1621insL‑2putative transposase insL for insertion sequence IS186
*REL606430,2860T→C100.0% ‑0.1 1502insL‑2putative transposase insL for insertion sequence IS186
*REL606430,2970T→C100.0% ‑0.1 1491insL‑2putative transposase insL for insertion sequence IS186
*REL606430,3530A→T100.0% ‑0.1 1435insL‑2putative transposase insL for insertion sequence IS186
*REL606430,5230C→T100.0% ‑0.1 1265insL‑2putative transposase insL for insertion sequence IS186
*REL606553,7590C→A100.0% ‑0.1 11919ECB_00512putative tail component of prophage
*REL606554,3770T→C100.0% ‑0.1 22537ECB_00512putative tail component of prophage
*REL606557,1610T→G100.0% ‑0.1 1104ECB_00514conserved hypothetical protein
*REL606557,1660G→C100.0% ‑0.1 1109ECB_00514conserved hypothetical protein
*REL606569,1070G→T100.0% ‑0.1 2830yhhIpredicted transposase
*REL606572,3760G→C100.0% ‑0.1 11113ECB_00530conserved hypothetical protein
*REL606572,4240T→G100.0% ‑0.1 51065ECB_00530conserved hypothetical protein