Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 300,681 | +C | 6.7% | coding (702/1473 nt) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 300,681 | 1 | .→C | 6.7% | 6.4 ‑2.7 ‑0.0 | 45 | coding (702/1473 nt) | betB | betaine aldehyde dehydrogenase, NAD‑dependent |
Reads supporting (aligned to +/- strand): new base (0/3): ref base (26/16): total (26/19) | ||||||||||
Fisher's exact test strand distribution p-value = 6.83e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.92e-01 |
AGGGAAGAGGCCGCCGAGTTAGCCATCACTTTTTTG.CCGCTGGCGACACCGCCGGTAAATGACACTTTGG > REL606/300646‑300715
|
aGGGAAGAGGCCGCCGAGTTAGCCATCACTTTTTTg > 1:5131623/1‑36 (MQ=255)
aGGGAAGAGGCCGCCGAGTTAGCCATCACTTTTTTg > 1:4627374/1‑36 (MQ=255)
aGGGAAGAGGCCGCCGAGCTAGCCATCACTTTTTTg > 1:4898874/1‑36 (MQ=255)
gggAAGAGGCCGCCGAGTTAGCCATCACTTTTTTG.c > 1:5485663/1‑36 (MQ=255)
ggAAGAGGCCGCCGAGTTAGCCATCACTTTTTTG.cc < 1:3039040/36‑1 (MQ=255)
aaGAGGCCGCCGAGTTAGCCATCACTTTTTTG.CCGc > 1:7417344/1‑36 (MQ=255)
agagGCCGCCGAGTTAGCCATCACTTTTTTG.CCGCt < 1:4622599/36‑1 (MQ=255)
agagGCCGCCGAGTTAGCCATCACTTTTTTG.CCGCt < 1:7029933/36‑1 (MQ=255)
gagGCCGCCGAGTTAGCAATCACTTTTTTG.CCGCTg > 1:3418951/1‑36 (MQ=255)
agtccgccgAGTTAGCCATCACTTTTTTG.CCGCTgg < 1:3457973/33‑1 (MQ=255)
ggCCGCCGAGTTAGCCATCACTTTTTTG.CCGCTGGc < 1:1611910/36‑1 (MQ=255)
ggCCGCCGAGTTAGCCATCACTTTTTTG.CCGCTGGc > 1:6975739/1‑36 (MQ=255)
gccgccGAGTTAGCCATCACTTTTTTG.CCGCTGGCg < 1:5271135/36‑1 (MQ=255)
gccgccGAGTTAGCCATCACTTTTTTG.CCGCTGGCg > 1:6896588/1‑36 (MQ=255)
gccgccGAGTTAGCCATCACTTTTTTG.CCGCTGGCg > 1:3336813/1‑36 (MQ=255)
ccgccgAGTTAGCCATAACTTTTTTG.CAGCTGGCGa > 1:2053025/1‑36 (MQ=37)
cgccgAGTTAGCCATCACTTTTTTG.CCGCTGGCGac < 1:6768894/36‑1 (MQ=255)
gccgAGTTAGCCATCACTTTTTTG.CCGCTGGCGaca < 1:6929967/36‑1 (MQ=255)
gccgAGTTAGCCATCACTTTTTTG.CCGCTGGCGaca > 1:5193686/1‑36 (MQ=255)
ccgAGTTAGCCATCACTTTTTTG.CCGCTGGCGacac < 1:2480416/36‑1 (MQ=255)
ccgAGTTAGCCATCACTTTCTTG.CCGCTGGCGacac > 1:645843/1‑36 (MQ=255)
cgAGTTAGCCATCACTTTTTTG.CCGCTGGCGACAcc < 1:4985649/36‑1 (MQ=255)
gAGTTAGCCATCACTTTTTTG.CCGCTGGCGACAccg > 1:6550686/1‑36 (MQ=255)
aGTTAGCCATCACTTTTTTG.CCGCTGGCGACAccgc > 1:7433508/1‑36 (MQ=255)
gTTAGCCATCACTTTTTTG.CCGCTGGCGACAccgcc < 1:7359768/36‑1 (MQ=255)
ttAGCCATCACTTTTTTG.CCGCTGGCGACAccgccg > 1:6517889/1‑36 (MQ=255)
ttAGCCATCACTTTTTTG.CCGCTGGCGACAccgccg > 1:5508475/1‑36 (MQ=255)
ttAGCCATCACTTTTTTG.CCGCTGGCGACAccgccg > 1:871359/1‑36 (MQ=255)
ttAGCCATCACTTTTTTG.CCGCTGGCGACAccgccg < 1:5019443/36‑1 (MQ=255)
aGCCATCACTTTTTTG.CCGCTGGCGACACCGCCGGt > 1:5551218/1‑36 (MQ=255)
gCCATCACTTTTTTG.CCGCTGGCGACACCGCCGGTa > 1:783832/1‑36 (MQ=255)
tCACTTTTTTG.CCGCTGGCTACACCCCGGGTAAATg > 1:6085398/1‑36 (MQ=25)
tCACTTTTTTG.CCGCTGGCGACACCGCCGGTAAATg > 1:6836855/1‑36 (MQ=255)
ctttttttcC.CCGCGGGCAAGCCCGCCGGTAAATGa < 1:5105772/33‑1 (MQ=2)
cACTTTTTTG.CCGCTGGCCACACCGCCGGTATATGa > 1:3696402/1‑36 (MQ=37)
cattttttGCCCGCGGGCGACACCGCCGGTAAATGa < 1:1159618/34‑1 (MQ=25)
aCTTTTTTG.CCGCTGGCGACCCCGCCGGTAAATGac > 1:3399890/1‑36 (MQ=255)
cTTTTTGC.CCGCGGGCGACACCGCCGGTAAATGaca < 1:7619647/36‑1 (MQ=37)
ttttttGCCCGCTGGCGACACCGCCGGTAAATGaca < 1:5914831/36‑1 (MQ=37)
tttttgC.CCGCTGGCACCACCGCCGGTAAATGacac < 1:7333778/36‑1 (MQ=16)
ttttGCCCGCGGGCAACCCCGCCGGTAAATGACACt < 1:446447/36‑1 (MQ=16)
ttttG.CCGCTGGCGACACCGCCGGTAAATGACACtt > 1:4833376/1‑36 (MQ=255)
ttttG.CCGCTGGCGACACCGCCGGTAAATGACACtt > 1:1478264/1‑36 (MQ=255)
ttttG.CCGCTGGCGACACCGCCGGTAAATGACACtt > 1:131743/1‑36 (MQ=255)
tttG.CCGCTGGCGACACCGCCGGTAAATTACACttt > 1:3764801/1‑36 (MQ=255)
tttC.CCGCTGGAAACACCGCCGGTAAATGACACttt < 1:4125830/36‑1 (MQ=25)
tgtG.CCGCGGGCAACACCGCCGGTAAATGACACttt < 1:584181/34‑1 (MQ=25)
tG.CCGCTGGCGACACCGCCGGTAAATGACACTTTgg > 1:4515222/1‑36 (MQ=255)
tG.CCGCTGGCGACACCGCCGGTAAATGACACTTTgg > 1:6927993/1‑36 (MQ=255)
tG.CCGCTGGCGACACCGCCGGTAAATGACACTTTgg > 1:4064036/1‑36 (MQ=255)
|
AGGGAAGAGGCCGCCGAGTTAGCCATCACTTTTTTG.CCGCTGGCGACACCGCCGGTAAATGACACTTTGG > REL606/300646‑300715
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|