New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 221948 =52 (0.870)4 (0.070) 4/68 NT 7.9% coding (487/708 nt) yaeB hypothetical protein
?REL606 4351442 = 41 (0.660)intergenic (+50/‑88) groEL/yjeI chaperonin GroEL/hypothetical protein

CAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGCCATTTCTGCCGCTGGCGCACTTTGCGCATAGC  >  REL606/221913‑221983
                                   |                                   
cAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCAc                                     >  1:8304659/1‑36 (MQ=255)
cAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCAc                                     >  1:7723894/1‑36 (MQ=255)
cAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCAc                                     <  1:1943777/36‑1 (MQ=255)
cAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCAc                                     >  1:4546578/1‑36 (MQ=255)
cAAAAGCTGCTTTTCGACCTCTGCGGTAAAACGCAc                                     >  1:1053836/1‑36 (MQ=255)
 aaacGCTGCTTTTCGGCCTCTGCGGTAAAACTCCcc                                    <  1:7692351/36‑1 (MQ=25)
 aaaaGCTGCTTTTCGACCTCTGCGGTAAAACTCAcc                                    <  1:8088334/36‑1 (MQ=255)
 aaaaGCTGCTTTTCGACCTCTGCGGTAAAACTCAcc                                    >  1:6551215/1‑36 (MQ=255)
 aaaaGCTGCTTTTCGACCTCTGCGGTAAAACTCAcc                                    >  1:6469290/1‑36 (MQ=255)
 aaaaGCTGCTTTTCGACCTCTGCGGTAAAAATCAcc                                    >  1:8435145/1‑36 (MQ=255)
 aaaaGCTGCTTTTAGACCTCTGCGGTAAAACTCAcc                                    <  1:7766473/36‑1 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAATACTCACCg                                   >  1:6390553/1‑36 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCATCg                                   >  1:5695283/1‑36 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCg                                   >  1:4496324/1‑36 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCg                                   <  1:158946/36‑1 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCg                                   >  1:5791053/1‑36 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCg                                   >  1:1922540/1‑36 (MQ=255)
  aaaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCg                                   >  1:1753504/1‑36 (MQ=255)
   aaGCTGCTTTTCGACGTCTGCGGTAAAACTCACCGc                                  <  1:4078719/36‑1 (MQ=255)
   aaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGc                                  <  1:1859622/36‑1 (MQ=255)
   aaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGc                                  >  1:3369372/1‑36 (MQ=255)
   aaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGc                                  <  1:4142174/36‑1 (MQ=255)
   aaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGc                                  >  1:746664/1‑36 (MQ=255)
   aaGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGc                                  >  1:7662320/1‑36 (MQ=255)
    aGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGcc                                 <  1:5392641/36‑1 (MQ=255)
     gctgctTTTCGACCTCTGCGGTAAAACTCACCGCCa                                >  1:29923/1‑36 (MQ=255)
      ctgctTTTCGACCTCTGCGGTAAAACTCACCGCCAt                               >  1:6001606/1‑36 (MQ=255)
      ctgctTTTCGACCTCTGCGGTAAAACCCACCGCCAt                               >  1:2970896/1‑36 (MQ=255)
         ctTTTCGACCTCTGCGGTAAAACTCACCGCCATTTc                            >  1:6796630/1‑36 (MQ=255)
          ttttCGACCTCTGCGGTAAAACTCACCGCCATTTCt                           >  1:8373344/1‑36 (MQ=255)
          ttttCGACCTCTGCGGTAAAACTCACCGCCATTTCt                           >  1:7871034/1‑36 (MQ=255)
           tttCGACCTCTGCGGTAAAACTCACCGCCATTTCTg                          >  1:2056663/1‑36 (MQ=255)
           tttCGACCTCTGCGGTAAAACTCACCGCCATTTCTg                          >  1:5766384/1‑36 (MQ=255)
            ttCGACCTCTGCGGTAAAACTCACCGCCATTTCTGc                         >  1:7946364/1‑36 (MQ=255)
             ccGACCTCGGCGGAAAACCCCCCCGCCATTTCTGcc                        <  1:7193796/35‑1 (MQ=9)
               gACCTCTGCGGTAAAACTCACCGCCATTTCTGCCGc                      >  1:602650/1‑36 (MQ=255)
               gACCTCTGCGGTAAAACTCACCGCCATTTCTGCCGc                      >  1:3142155/1‑36 (MQ=255)
               gACCTCTGCGGTAAAACTCACCGCCATTTCTGCCGc                      >  1:3145084/1‑36 (MQ=255)
                 ccTCTGCGGTAAAACTCACCGCCATTTCTGCCGCTg                    >  1:5512054/1‑36 (MQ=255)
                 ccTCTGCGGTAAAACTCACCGCCATTTCTGCCGCTg                    >  1:2763342/1‑36 (MQ=255)
                 ccTCTGCGGAAAACCCCCCCGCCATTTCTGCCGCTg                    <  1:1469422/36‑1 (MQ=16)
                   tctGCGGTAAAACTCACCGCCATTTCTGCCGCTGgc                  >  1:8222849/1‑36 (MQ=255)
                    ctGCGGTAAAACTCACCGCCATTTCTGCCGCTGgcg                 >  1:646478/1‑36 (MQ=255)
                     tGCGGTAAAACTCACCGCCATTTCTGCCGCTGgcgc                >  1:7133375/1‑36 (MQ=255)
                     tGCGGTAAAACTCACCGCCATTTCTGCCGCTGgcgc                >  1:3590030/1‑36 (MQ=255)
                       cGGTAAAACTCACCGCCATTTCTGCCGCTGGCGCAc              >  1:4284537/1‑36 (MQ=255)
                         gaaaacccccCCGCCATTTCTGCCGCTGGCGCACtt            >  1:7992905‑M1/11‑36 (MQ=255)
                         gTAAAACTCACCGCCATTTCTGCCGCTGGCGCACtt            >  1:1683068/1‑36 (MQ=255)
                          tAAAACTCACCGCCATTTCTGCCGCTGGCGCACttt           >  1:2970288/1‑36 (MQ=255)
                          tAAAACTCACCGCCATTTCTGCCGCTGGCGCACttt           >  1:3601405/1‑36 (MQ=255)
                          tAAAACTCACAGCCATTTCTGCCGCTGGCGCACtat           >  1:2110754/1‑34 (MQ=38)
                           aaacccccCCGCCATTTCTGCCGCTGGCGCACTTTg          >  1:3424841‑M1/9‑36 (MQ=255)
                           aaaaCTCACCGCCATTTCTGCCGCTGGCGCACTTTg          >  1:3808643/1‑36 (MQ=255)
                           aaaaCTCACCGCCATTTCTGCCGCTGGCGCACTTTg          >  1:1414388/1‑36 (MQ=255)
                              aCTCACCGCCATTTCTGCCGCTGGCGCACTTTgcgc       >  1:4941975/1‑36 (MQ=255)
                              aCTCACCGCCATTTCTGCCGCTGGCGCACTTTgcgc       >  1:419854/1‑36 (MQ=255)
                              aCTCACCGCCATTTCTGCCGCTGGCGCACTTTgcgc       >  1:8234904/1‑36 (MQ=255)
                                cccCCGCCATTTCTGCCGCTGGCGCACTTTGCGCAt     >  1:7066026‑M1/4‑36 (MQ=255)
                                 ccCCGCCATTTCTGCCGCTGGCGCACTTTGCGCATa    >  1:2164977‑M1/3‑36 (MQ=255)
                                 cACCGCCATTTCTGCCGCTGGCGCACTTTGCGCATa    >  1:7392179/1‑36 (MQ=255)
                                 cACCGCCATTTCTGCCGCTGGCGCACTTTGCGCATa    >  1:3868858/1‑36 (MQ=255)
                                   CCGCCATTTCTGCCGCTGGCGCACTTTGCGCATAGc  >  1:4000375‑M1/1‑36 (MQ=255)
                                   |                                   
CAAAAGCTGCTTTTCGACCTCTGCGGTAAAACTCACCGCCATTTCTGCCGCTGGCGCACTTTGCGCATAGC  >  REL606/221913‑221983

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG