Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,020,505 | G→T | 11.7% | D176Y (GAT→TAT) | ycbU → | predicted fimbrial‑like adhesin protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,020,505 | 0 | G→T | 11.7% | 5.6 ‑4.1 ‑0.0 | 43 | 526 | ycbU | predicted fimbrial‑like adhesin protein |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (15/23): total (20/23) | ||||||||||
Fisher's exact test strand distribution p-value = 1.61e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.76e-01 |
AACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACG > REL606/1020471‑1020540
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aaCGGGCGGTAATGCGACGGCGGTTCTCTATTTTGa < 1:7931210/36‑1 (MQ=255)
aaCGGGCGGGAATGCGACGGCGGGTCTCTCTTTTGa > 1:148634/1‑36 (MQ=37)
aCGGGCGGTAATGCGACGGCGGTTCTCTATTTTGAt < 1:7413541/36‑1 (MQ=255)
aCGGGCGGTAATGCGACGGCGGTTCTCTATTTTGAt < 1:3954218/36‑1 (MQ=255)
aCGGGCGGTAATGCGACGGCGGGTTTTTATTTTGAt > 1:294350/1‑36 (MQ=21)
cGGGCGGTAATGCGACGGTGGTTCTCTATTTTGATc < 1:4810887/36‑1 (MQ=255)
ggCTGTAATGCGACGGCTGTTCTCTATTTTGATCTg < 1:6006930/36‑1 (MQ=37)
gCGGTAATGCGACGGCGGTTCTCTATTTTGATCTgg < 1:2201307/36‑1 (MQ=255)
cGGTAATGCGACGGCGGTTCTCTATTTTTATCTTGt > 1:1023416/1‑36 (MQ=37)
cGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGt < 1:3466627/36‑1 (MQ=255)
ggTAATGCGACGGCGGTTCTCTATTTTTTTCTTGtt > 1:679892/1‑36 (MQ=25)
ggTAATGCGACGGCGGTTCTCTATTTTTATCTTGtt > 1:4814291/1‑36 (MQ=37)
tAATGCGACGGCGGGTTTCTTTTTTTTTCTTGtttt > 1:4992086/1‑35 (MQ=9)
aTGCGACGGCGGTTTTCTTTTTTTATTTGTTTTTcc > 1:7734232/1‑36 (MQ=2)
cGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGt < 1:1514817/36‑1 (MQ=255)
cggTTCTCTATTTTGATCTGGTTTACAATTGAAGGa > 1:1423830/1‑36 (MQ=37)
gTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGt > 1:4886005/1‑36 (MQ=255)
gTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGt > 1:1997017/1‑36 (MQ=255)
gTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGt < 1:2378699/36‑1 (MQ=255)
ttCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTg < 1:3587135/36‑1 (MQ=255)
ttCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTg > 1:3751598/1‑36 (MQ=255)
ttCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTg < 1:566534/36‑1 (MQ=255)
tctcTATTTTGATCTGTTTTACCAGTGAAGGAGTGa > 1:6823331/1‑36 (MQ=255)
tctcTATTTTGATCTGGTTTACCAGTGAAGGAGTGa < 1:6590057/36‑1 (MQ=255)
tctcTATTTTGATCTGGTTTACCAGTGAAGGAGTGa > 1:4828525/1‑36 (MQ=255)
tctcTATTTTGATCTGGTTTACCAGTGAAGGAGTGa < 1:6500992/36‑1 (MQ=255)
ctctATTTTGATCTGGTTTACCAGTGAAGGAGTGAt > 1:6662648/1‑36 (MQ=255)
tctATTTTGATCTGGTTTACCAGTGAAGGAGTGATg > 1:334410/1‑36 (MQ=255)
ctATTTTGATCTGGTTTACCAGTGAAGGAGTGATGt > 1:2599501/1‑36 (MQ=255)
ctATTTTGATCTGGTTTACCAGTGAAGGAGTGATGt < 1:163460/36‑1 (MQ=255)
ctATTTTGATCTGGTTTACCAGTGAAGGAGTGATGt < 1:3075404/36‑1 (MQ=255)
tATTTTGATCTGGTTTACCAGTGAAGGAGTGATGtt < 1:4314143/36‑1 (MQ=255)
tATTTTGATCTGGTTTACCAGTGAAGGAGTGATGtt < 1:1207763/36‑1 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa > 1:924066/1‑36 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa > 1:4992143/1‑36 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa < 1:7853209/36‑1 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa > 1:779609/1‑36 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa < 1:4509913/36‑1 (MQ=255)
ttttGATCTGGTTTACCAGTGAAGGAGTGATGTTGa < 1:2438054/36‑1 (MQ=255)
tttGATCTGGTTTACCAGTGAAGGAGTGATGTTGaa > 1:1956230/1‑36 (MQ=255)
tttGATCTGGTTTACCAGTGAAGGAGTGATGTTGaa < 1:5490751/36‑1 (MQ=255)
ttGATCTGGTTTACCAGTGAAGGAGTGATGTTGaaa < 1:4407403/36‑1 (MQ=255)
ttGATCTGGTTTACCAGTGAAGGAGTGATGTTGaaa < 1:6580497/36‑1 (MQ=255)
gATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACg < 1:7311041/36‑1 (MQ=255)
gATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACg < 1:7611950/36‑1 (MQ=255)
gATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACg < 1:2609009/36‑1 (MQ=255)
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AACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGAAGGAGTGATGTTGAAACG > REL606/1020471‑1020540
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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