Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 96.3% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)51 (0.900) 31/64 NT 96.2% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 2 (0.100)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =2 (0.040)54 (0.960) 37/64 NT 96.4% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 139 total aligned reads displayed.

CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA  >  REL606/3651056‑3651126
                                   |                                   
tgtgccttaatggagcattttctttctggcgaccat                                     >  1:137505‑M2/36‑36 (MQ=255)
cATTCCTAGCCTCCTGTGTTGATTTCCAACGAGTAt                                     <  1:7402045/36‑1 (MQ=255)
cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                     <  1:6303673/36‑1 (MQ=255)
cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                     <  1:3203995/36‑1 (MQ=255)
 gtgccttaatggagcattttctttctggcgaccaTg                                    <  1:1965887‑M2/2‑1 (MQ=255)
 aTTCCGAGCCTCCTGTGTTGATTTCCAACGAGTATg                                    >  1:7155481/1‑36 (MQ=255)
 aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATg                                    <  1:6885177/36‑1 (MQ=255)
  ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGt                                   >  1:1039417/1‑36 (MQ=255)
  ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGt                                   >  1:4179307/1‑36 (MQ=255)
  tgccttaatggagcattttctttctggcgaccaTGt                                   >  1:5320673‑M2/34‑36 (MQ=255)
   gccttaatggagcattttctttctggcgaccaTGTa                                  >  1:940919‑M2/33‑36 (MQ=255)
    ccttaatggagcattttctttctggcgaccaTGTAc                                 <  1:5382006‑M2/5‑1 (MQ=255)
    ccttaatggagcattttctttctggcgaccaTGTAc                                 >  1:6625882‑M2/32‑36 (MQ=255)
     cttaatggagcattttctttctggcgaccaTGTACt                                >  1:3013390‑M2/31‑36 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACt                                <  1:1667397/36‑1 (MQ=255)
     ccAGCCTCCTGTGTTGATTTCAAACGAGTATGTACt                                >  1:76897/1‑36 (MQ=255)
      cAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTg                               >  1:3004560/1‑36 (MQ=255)
       taatggagcattttctttctggcgaccaTGTACTGc                              >  1:5224545‑M2/29‑36 (MQ=255)
        gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCa                             <  1:6957757/36‑1 (MQ=255)
        aatggagcattttctttatggcgaccaTGTACTGCa                             >  1:2778848‑M2/28‑36 (MQ=255)
         cctcctGTGTTGATTTCCAACGAGTATGTACTGCAc                            <  1:1095971/36‑1 (MQ=255)
         cctcctGTGTTGATTTCCAACGAGTATGTACTGCAc                            <  1:5127768/36‑1 (MQ=255)
         atggagcattttctttctggcgaccaTGTACTGCAc                            >  1:5179441‑M2/27‑36 (MQ=255)
          ctcctGTGTTGATTTCCAACGAGTATGTACTGCAcc                           >  1:4900494/1‑36 (MQ=255)
           tcctGTGTTGATTTCCAACGAGTATGTACTGCAccc                          <  1:8351239/36‑1 (MQ=255)
           ggagcattttctttctggcgaccaTGTACTGCAccc                          >  1:7004431‑M2/25‑36 (MQ=255)
            gagcattttctttctggcgaccaTGTACTGCACCCa                         <  1:5656971‑M2/13‑1 (MQ=255)
              gcattttctttctggcgaccaTGTACTGCACCCAtt                       <  1:6576740‑M2/15‑1 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                      <  1:600063/36‑1 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                      >  1:5203403/1‑36 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                      >  1:3958981/1‑36 (MQ=255)
               gtgtTGATTTCCAACGAGTATGTACTGCACCCAttt                      >  1:2965953/1‑36 (MQ=255)
                tgtTGATTTCCAACTAGTATGTACTGCACCCAtttt                     <  1:2435613/36‑1 (MQ=255)
                attttctttctggcgaccaTGTACTGCACCCAtttt                     >  1:4868053‑M2/20‑36 (MQ=255)
                attttctttctggcgaccaTGTACTGCACCCAtttt                     <  1:5787654‑M2/17‑1 (MQ=255)
                attttctttctggcgaccaTGTACTGCACCCAtttt                     <  1:3888706‑M2/17‑1 (MQ=255)
                 ttttctttctggcgaccaTGTACTGCACCCATTttg                    >  1:5054637‑M2/19‑36 (MQ=255)
                 gtTGATTTCCAACGAGTATGTACTGCACCCATTttg                    <  1:3253910/36‑1 (MQ=255)
                  tttctttctggcgaccaTGTACTGCACCCATTttgt                   <  1:6811842‑M2/19‑1 (MQ=255)
                  tttctttctggcgaccaTGTACTGCACCCATTttgt                   <  1:8317570‑M2/19‑1 (MQ=255)
                  ttGATTTCCAACGAGTATGTACTGCACCCATTttgt                   >  1:454347/1‑36 (MQ=255)
                   ttctttctggcgaccaTGTGCTGCACCCATTttgtt                  <  1:127176‑M2/20‑1 (MQ=255)
                   ttctttctggcgaccaTGTACTGCACCCATTttgtt                  <  1:4579496‑M2/20‑1 (MQ=255)
                   ttctttctggcgaccaTGTACTGCACCCATTttgtt                  <  1:7900082‑M2/20‑1 (MQ=255)
                   ttctttctggcgaccaTGTACTGCACCCATTttgtt                  <  1:5104438‑M2/20‑1 (MQ=255)
                   tGATTTCCAACGAGTATGTACTGCACCCATTttgtt                  >  1:6085401/1‑36 (MQ=255)
                    tctttctggcgaccaTGTACTGCACCCATTttgttg                 <  1:6701061‑M2/21‑1 (MQ=255)
                     ctttctggcgaccaTGTACTGCGCCCATTTTGTTgg                <  1:964202‑M2/22‑1 (MQ=255)
                     ctttctggcgaccaTGTACTGCACCCATTTTGTTgg                <  1:1899667‑M2/22‑1 (MQ=255)
                     aTTTCCAACGAGTATGTACTGCACCCATTTTGTTgg                >  1:415847/1‑36 (MQ=255)
                      tttctggcgaccaTGTACTGCACCCATTTTGTTGGa               <  1:7783581‑M2/23‑1 (MQ=255)
                      tttctggcgaccaTGTACTGCACCCATTTTGTTGGa               >  1:2674739‑M2/14‑36 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc              <  1:5893589‑M2/24‑1 (MQ=255)
                       ttctggcgaccaTGTACTGCACCCATTTTGTTGGAc              >  1:7391684‑M2/13‑36 (MQ=255)
                       ttCCAACGGGTATGTGCTGCACCGATTTTGTTGGAc              <  1:4339647/36‑1 (MQ=18)
                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc              <  1:2034895/36‑1 (MQ=255)
                       ttCCAACGAGTATGTACTGCACCCATTTTGTTGGAc              <  1:5972790/36‑1 (MQ=255)
                        tctggcgaccaTGTACTGCACCCATTTTGTTGGACg             >  1:2246725‑M2/12‑36 (MQ=255)
                        tCCAACGAGTATGTACTGCACCCATTTTGTTGGACg             >  1:6687625/1‑36 (MQ=255)
                        tCCAACGAGTATGTACTGCACCCATTTTGTTGGACg             <  1:385994/36‑1 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt           <  1:7661353/36‑1 (MQ=255)
                          cAACGAGTATGTACTGCACCCATTTTGTTGGACGAt           <  1:2860412/36‑1 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg          <  1:1824215/36‑1 (MQ=255)
                           aaCGAGTATGTACTGCACCCATTTTGTTGGACGATg          >  1:6058997/1‑36 (MQ=255)
                            gcgaccaTGTACTGCGCCCATTTTGTTGGACGATGa         <  1:8456442‑M2/29‑1 (MQ=255)
                            gcgaccaTGTACTGCACCCATTTTGTTGGACGATGa         >  1:8192928‑M2/8‑36 (MQ=255)
                            aCGAGTATGTACTGCACCCATTTTGTTGGACGAtca         >  1:7562403/1‑34 (MQ=255)
                            aCGAGTATGTACTGCACCCATTTTGTTGGACGATGa         <  1:1631629/36‑1 (MQ=255)
                             cgaccaTGTACTGCACCCATTTTGTTGGACGATGaa        <  1:6347382‑M2/30‑1 (MQ=255)
                             cgaccaTGTACTGCACCCATTTTGTTGGACGATGaa        >  1:811096‑M2/7‑36 (MQ=255)
                             cgaccaTGTACTGCACCCATTTTGTTGGACGATGaa        <  1:1036401‑M2/30‑1 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa        <  1:1311727/36‑1 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa        >  1:8381282/1‑36 (MQ=255)
                             cGAGTATGTACTGCACCCATTTTGTTGGACGATGaa        <  1:7867645/36‑1 (MQ=255)
                              gaccaTGTACTGCACCCATTTTGTTGGACGATGaaa       <  1:8033425‑M2/31‑1 (MQ=255)
                              gaccaTGTACTGCACCCATTTTGTTGGACGATGaaa       >  1:7932173‑M2/6‑36 (MQ=255)
                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa       <  1:6343548/36‑1 (MQ=255)
                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa       >  1:858386/1‑36 (MQ=255)
                              gAGTATGTACTGCACCCATTTTGTTGGACGATGaaa       >  1:1006732/1‑36 (MQ=255)
                               accaTGTACTGCACCCATTTTGTTGGACGATGAAAt      >  1:4412053‑M2/5‑36 (MQ=255)
                               accaTGTACTGCACCCATTTTGTTGGACGATGAAAt      >  1:1495376‑M2/5‑36 (MQ=255)
                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg     >  1:5454815/1‑36 (MQ=38)
                                gTATGTACTGCACCCATTTTGTTGGACGATGAAATg     >  1:4940112/1‑36 (MQ=38)
                                caaTGTACTGCACCCATTTTGTTGGACGATGAAATg     >  1:3688783‑M2/4‑36 (MQ=255)
                                 tATGTACTGCACCCATTTTGTTGGACGATGAAATgg    <  1:7624885/36‑1 (MQ=35)
                                 caTGTACTGCACCCATTTTGTTGGACGATGAAATgg    >  1:7538639‑M2/3‑36 (MQ=255)
                                  aTGTACTGCACCCATTTTGTTGGACGATGAAATGGa   >  1:7148240‑M2/2‑36 (MQ=255)
                                  aTGTACTGCACCCATTTTGTTGGACGATGAAATGGa   >  1:6737550‑M2/2‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:1451597‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  <  1:7958386‑M2/36‑1 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:1619744‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:7214560‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:7040273‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:377410‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:6085727‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:4105047‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:5831524‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:5664992‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  >  1:4342619‑M2/1‑36 (MQ=255)
                                   TGTACTGCACCCATTTTGTTGGACGATGAAATGGaa  <  1:5042546‑M2/36‑1 (MQ=255)
                                   |                                   
CATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA  >  REL606/3651056‑3651126

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG