New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 103607333 (0.600)13 (0.240) 8/62 NT 28.6% intergenic (+45/+31) ycbG/ompA hypothetical protein/outer membrane protein A (3a;II*;G;d)
?REL606 = 2540943 32 (0.520)coding (38/1290 nt) uraA uracil transporter

ATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGT.CTTTCACTCACCCCGATAGCACGGCGCGTC  >  REL606/2540909‑2540978
                                  |                                    
aTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGg                                     <  1:4574812‑M2/36‑2 (MQ=255)
aTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGg                                     <  1:7326460‑M2/36‑2 (MQ=255)
aTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGg                                     <  1:4605185‑M2/36‑2 (MQ=255)
 tGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgc                                    <  1:7886259‑M2/36‑3 (MQ=255)
  gTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcg                                   >  1:1822344‑M2/1‑33 (MQ=255)
  gTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcg                                   <  1:5558580‑M2/36‑4 (MQ=255)
  gTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcg                                   <  1:4970353‑M2/36‑4 (MQ=255)
  gTTGCAAACTAAGCGGGATTGTCTGTAAAAATGgcg                                   <  1:1188834‑M2/36‑4 (MQ=255)
   ttGCAAACTAAGCGGGATTGTCTGTAAAAGTGgcgg                                  <  1:6355623‑M2/36‑5 (MQ=255)
    tGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGt                                 <  1:1080629/36‑1 (MQ=255)
    tGCAAACTAAGCGGGATTGTCTCTAAAAGTGGCGGt                                 <  1:6037290/36‑1 (MQ=255)
     gCAAACTAAGCGGGATTGTCTGTAAAAGTGgcgggg                                <  1:4790121‑M2/36‑7 (MQ=255)
     gCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGtg                                >  1:7943672/1‑35 (MQ=255)
      cAAACTAAGCGGGATTGTCTGTAAAAGTGgcggggt                               <  1:78936‑M2/36‑8 (MQ=255)
      cAAACTAAGCGGGATTGTCTGTAAAAGTGgcggggt                               <  1:2327320‑M2/36‑8 (MQ=255)
      cAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGtgt                               >  1:5393066/1‑34 (MQ=255)
       aaaCTAAGCGGGATTGTCTGTAAAAGTGgcggtgtt                              <  1:6808376‑M2/36‑9 (MQ=255)
       aaaCTAAGCGGGATTGTCTGTAAAAGTGgcggggtt                              <  1:2443193‑M2/36‑9 (MQ=255)
        aaCTAAGCGGGATTGTCTGTAAAAGTGgcggtgttt                             <  1:3720414‑M2/36‑10 (MQ=255)
        aaCTAAGCGGGATTGTCTGTAAAAGTGGCGGT.Cttt                            <  1:1838055/36‑1 (MQ=255)
        aaCTAAGCGGGATTGTCTGTAAAAGCGgcggggttt                             <  1:5021735‑M2/36‑10 (MQ=255)
        aaCTAAGCGAGATTGTCTGTAAAAGTGGCGGT.Cttt                            <  1:1079244/36‑1 (MQ=255)
         aCTAAGCGGGATTGTCTGTAAAAGTGgcggggtttt                            <  1:1238290‑M2/36‑11 (MQ=255)
         aCTAAGCGGGATTGTCTGTAAAAGTGGCGGT.CTTtc                           <  1:24087/36‑1 (MQ=255)
           tAAGCGGGATTGTCTGTAAAAGTGgcgggggttttt                          <  1:2930571‑M2/36‑13 (MQ=255)
           tAAGCGGGATTGTCTGTAAAAGTGGCGGT.CTTtcac                         <  1:6575380/36‑1 (MQ=255)
            aaGCGGGATTGTCTGTAAAAGTGgcggggttttttt                         <  1:7486222‑M2/36‑14 (MQ=255)
            aaGCGGGATTGTCTGTAAAAGTGGCGGT.CTTtcact                        <  1:4668983/36‑1 (MQ=255)
             aGCGGGATTGTCTGTAAAAGTGgcggggtttttttt                        <  1:1583209‑M2/36‑15 (MQ=255)
              gCGGGATTGTCTGTAAAAGTGgcggggttttttttc                       <  1:2306861‑M2/36‑16 (MQ=255)
              gCGGGATTGTCTGTAAAAGTGgcgggggttttttta                       <  1:1708648‑M2/36‑16 (MQ=255)
              gCGGGATTGTCTGTAAAAGTGGCGGT.CTTtcactca                      <  1:1793633/36‑1 (MQ=255)
                 ggATTGTCTGTAAAAGTGGCGGT.CTTTCACTCAccc                   <  1:1265563/36‑1 (MQ=255)
                  gATTGTCTGTAAAAGTGGCGGT.CTTTCACTCAcccc                  <  1:280399/36‑1 (MQ=255)
                  gATTGTCTGTAAAAGTGGCGGA.CTTTTTCCCAcccc                  >  1:527834/1‑36 (MQ=19)
                   aTTGTCTGTAAAAGTGGCGGT.CTTTCACTCACCCCg                 <  1:6325740/36‑1 (MQ=255)
                    ttGTCTGTAAAAGTGGCGGT.CTTTCACTCACCCCGa                <  1:1203749/36‑1 (MQ=255)
                     tGTCTGTAAAAGTGGCGGT.CTTTCACTCCCCCCGAt               <  1:7166312/36‑1 (MQ=255)
                      gTCTGTAAAAGTGGCGTT.CTTTCACTCACCCCGATa              <  1:7305382/36‑1 (MQ=255)
                      gTCTGTAAAAGTGGCGGT.CTTTCACTCACCCCGATa              <  1:1199987/36‑1 (MQ=255)
                       tCTGTAAAAGTGGCGGT.CTTTCACTCACCCCGATAg             <  1:1644476/36‑1 (MQ=255)
                         tGTAAAAGTGGCGGTACTTTC.CTCACCCCGCTAACa           >  1:1552366/1‑36 (MQ=9)
                          gTAAAAGTGGCGGT.CTTTCACTCACCCCGATAGCAc          <  1:137281/36‑1 (MQ=255)
                          gTAAAAGTGGCGGT.CTTTCACTCACCCCGATAGCAc          <  1:2299337/36‑1 (MQ=255)
                          gTAAAAGTGGCGGT.CTTTCACTCACCCCGATAGCAc          <  1:1102716/36‑1 (MQ=255)
                            aaaaGTGGCGGT.CTTTCACTCACCCCGATAGCACgg        <  1:4471154/36‑1 (MQ=255)
                             aaaGTGGCGGT.CTTTCACTCACCCCGATAGCACGgc       <  1:3058694/36‑1 (MQ=255)
                             aaaGTGGCGGT.CTTTCACTCACCCCGATAGCACGgc       <  1:1099746/36‑1 (MQ=255)
                              aaGTGGCGGT.CTTTCACTCACCCCGATAGCACGgcg      <  1:3946838/36‑1 (MQ=255)
                               aGTGGCGGT.CTTTCACTCACCCCGATAGCACGgcgc     <  1:5898546/36‑1 (MQ=255)
                               aGTGGCGGT.CTTTCACTCACCCCGATAGCACGgcgc     <  1:4650887/36‑1 (MQ=255)
                                gTGGCGGT.CTTTCACTCACCCCGATAGCACGGcgcg    <  1:554023/36‑1 (MQ=255)
                                 tGGCGGT.CTTTCACTCACCCCGATAGCACGGCGCGt   <  1:8001565/36‑1 (MQ=255)
                                  ggCGGT.CTTTCACTCACCCCGATAGCACGGCGCGTc  <  1:1525761/36‑1 (MQ=255)
                                  |                                    
ATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGT.CTTTCACTCACCCCGATAGCACGGCGCGTC  >  REL606/2540909‑2540978

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 21 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG