Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 2,574,203 | A→T | 23.4% | intergenic (+45/+773) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 2,574,203 | 0 | A→T | 23.4% | 5.6 ‑2.2 0.0 | 21 | intergenic (+45/+773) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
Reads supporting (aligned to +/- strand): new base (5/0): ref base (8/8): total (13/8) | ||||||||||
Fisher's exact test strand distribution p-value = 1.11e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTT > REL606/2574172‑2574237
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aaaaaaaacCCGCCGAATTTGGCGGTTTTTTATTGc < 1:5114470/33‑1 (MQ=17)
aaaaaaaaCCGCCGAATTTGGCGGTTTTTTATTGCt < 1:2842673/34‑1 (MQ=255)
aTAAAAAACCGCCAAATTCGGCGGTTTTTTTttttt > 1:5484820/1‑33 (MQ=17)
aTAAAAAACCGCAGAATTTGGCGGGTTTTTTttttt > 1:1829118/1‑33 (MQ=12)
tAAAAAACCGCCGAATTTGGCGGTTTTTTTTTTCtt > 1:6955449/1‑35 (MQ=17)
acccgccgAATTTGGCGGTTTTTTATTGCTAGTCTg < 1:751042/34‑1 (MQ=255)
cgccgAATTTGGCGGTTTTTTTTTTTTTGTCTTGtt > 1:4590479/1‑36 (MQ=9)
aTTTGGCGGTTTTTTATTTCTAGTCTTGTTCTCGGc > 1:5905266/1‑36 (MQ=25)
tttGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGcc < 1:2382910/36‑1 (MQ=255)
ttGGCGGTTTTTTTTTTCTAGTCTGGTTCGCGGCCt > 1:2812338/1‑36 (MQ=18)
ttGGCGGTTTTTTATTGCTAGTCTGTTTCGCGGCCt < 1:3390390/36‑1 (MQ=255)
gCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTc < 1:6155738/36‑1 (MQ=255)
cGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTcc > 1:3109828/1‑36 (MQ=255)
ggTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCca > 1:3635773/1‑36 (MQ=255)
ttttATTGCTAGTCTGGTTCGCGGCCTTTCcagcag > 1:3001264/1‑36 (MQ=255)
ttttATTGCTAGTCTGGTTCGCGGCCTTTCcagcag > 1:6958167/1‑36 (MQ=255)
ttATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGt > 1:3602673/1‑36 (MQ=255)
ttATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGt > 1:4831840/1‑36 (MQ=255)
ttATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGt < 1:6048503/36‑1 (MQ=255)
ttATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGt < 1:6530063/36‑1 (MQ=255)
tATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGCtt > 1:187616/1‑36 (MQ=255)
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AATAAAAAACCGCCGAATTTGGCGGTTTTTTATTGCTAGTCTGGTTCGCGGCCTTTCCAGCAGGTT > REL606/2574172‑2574237
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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