Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,141,000 | C→A | 32.5% | Q25K (CAA→AAA) | yijC → | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,141,000 | 0 | C→A | 32.5% | 5.2 ‑2.7 0.0 | 24 | 73 | yijC | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (0/8): ref base (6/10): total (6/18) | ||||||||||
Fisher's exact test strand distribution p-value = 6.64e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
GCAAGGATTCAGACATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGAAAAAACCCGCCGTTCGCTGGTGGA > REL606/4140965‑4141034
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gCAAGGATTCAGACATCGTGATGGGCGTAAGAgcgc > 1:4219217/1‑36 (MQ=255)
gCAAGGATTCAGACATCGTGATGGGCGTAAGAgcgc > 1:1262241/1‑36 (MQ=255)
aaGGATTCAGACATCGTGATGGGCGTAAGAGCGgaa > 1:14964/1‑36 (MQ=255)
aaGGATTCAGACATCGTGATGGGCGTAAGAGCGcaa > 1:954894/1‑36 (MQ=255)
aaGGATTCAGACATCGTGATGGGCGTAAGAGCGcaa < 1:2589514/36‑1 (MQ=255)
aGGATTCAGACATCGTGATGGGCGTAAGAGCGcaac < 1:3679470/36‑1 (MQ=255)
aGGATTCAGACATCGTGATGGGCGTAAGAGCGcaac > 1:1220731/1‑36 (MQ=255)
aTTCAGACATCGTGATGTGCGTAAGAGCGCAAC.aaa > 1:1453889/1‑36 (MQ=255)
aTTCAGACATCGTGATGGGCGTAAGAGCGCAAC.aaa < 1:1109742/36‑1 (MQ=255)
ttCAGGCNNNGTGAGGGGCGGAAGAGCGCAAC.aaaa < 1:2021034/36‑1 (MQ=19)
ttCAGACATCGTGATGGGCGTAAGAGCGCAAC.aaaa < 1:2788684/36‑1 (MQ=255)
ttCAGACATCGTGATGGGCGTAAGAGCGCAAC.aaaa > 1:1785625/1‑36 (MQ=255)
tCAGACATCGTGATGGGCGTAAGAGCGCAAC.aaaaa < 1:5917773/36‑1 (MQ=255)
gACATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGaa > 1:1600010/1‑36 (MQ=255)
cATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGaaaa < 1:1726711/36‑1 (MQ=255)
cATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGaaaa < 1:1518439/36‑1 (MQ=255)
cATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGaaaa > 1:1486267/1‑36 (MQ=255)
aTCGTGATGGGCGTAAGAGCGCAAC.AANNAGaaaaa > 1:1276078/1‑36 (MQ=255)
aTCGTGATGGGCGTAAGAGCGCAAC.AAAAAGaaaaa < 1:3444039/36‑1 (MQ=255)
tCGTGATGGGAGTAAGAGCGCAAC.AAAAAGaaaaaa < 1:4372940/36‑1 (MQ=255)
gTGATGGGCGTAAGAGCGCAAC.AAAAAGAAAAAAcc < 1:3541218/36‑1 (MQ=255)
aTGGGCGTAAGAGCGCAAA.AAAAAGAAAAAACccgc < 1:16741/36‑1 (MQ=255)
aTGGGCGTAAGAGCGAAAC.AAAAAGAAAAAACccgc < 1:4045768/36‑1 (MQ=255)
gggCGTAAGAGAGAAAC.AAAAAAAAAAAACccgccg < 1:4921432/36‑1 (MQ=25)
gggCGTAAAAG.GAAACAAAAAAGATAAAACccgccg < 1:5257769/36‑1 (MQ=2)
aaaagCGAAAA.AAAAAAAAAAAACCCGCCGTTCGCt < 1:361882/33‑1 (MQ=12)
aaGAGCGCAAC.AAAAAGAAAAAACCCGCCGTTCGCt > 1:4897980/1‑36 (MQ=255)
aaGAGCGAAAC.AAAAAGAAAAAACCCGCCGTTCGCt < 1:1454098/36‑1 (MQ=255)
aaGAGCGAAAC.AAAAAAAAAAAACCCGCCGTTCGCt < 1:1897846/36‑1 (MQ=37)
agagCGAATA.AAAAAGAAAAAACCCGCCGTTCGCtg < 1:104865/36‑1 (MQ=25)
gagCGAAAA.AAAAAGAAAAAACCCGCCGTTCGCtgg < 1:2809434/36‑1 (MQ=37)
gcAAC.AAAAAGAAAAAACCCGCCGTTCGCTGGTGGa > 1:2657228/1‑36 (MQ=255)
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GCAAGGATTCAGACATCGTGATGGGCGTAAGAGCGCAAC.AAAAAGAAAAAACCCGCCGTTCGCTGGTGGA > REL606/4140965‑4141034
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 14 ≤
ATCG
< 27 ≤
ATCG
< 37 ≤
ATCG
|