Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 218,780 | A→G | 14.4% | K224E (AAA→GAA) | cutF → | lipoprotein involved with copper homeostasis and adhesion |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 218,780 | 0 | A→G | 14.4% | 2.1 ‑2.6 0.0 | 43 | 670 | cutF | lipoprotein involved with copper homeostasis and adhesion |
Reads supporting (aligned to +/- strand): new base (7/0): ref base (21/15): total (28/15) | ||||||||||
Fisher's exact test strand distribution p-value = 7.65e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CGCCGACTAAAGTATTGGCACCCGATACGGCA.GGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGG > REL606/218745‑218814
|
cgcCGACTAAAGTATTGGCACCCGATACGGCA.GGGa < 1:1874289/36‑1 (MQ=255)
gcCGACTAAAGTATTGGCACCCGATACGGCA.GGGaa < 1:944490/36‑1 (MQ=255)
cGACTAAAGTATTGGCACCCGATACGGCA.GGGAAAt < 1:373860/36‑1 (MQ=255)
gACTAAAGTATTGGCACCCGATACGGCA.GGGgaaat > 1:4793780/1‑34 (MQ=38)
aCTAAAGTATTGGCACCCGATACGGCA.GGGAAAttt > 1:711481/1‑36 (MQ=255)
cTAAAGTATTGTCACCCCTTCCGGCA.GGGAAAtttt < 1:6211964/36‑1 (MQ=19)
cTAAAGTATTGGCACCCGATACGGCA.GGGAAAtttt < 1:3060820/36‑1 (MQ=255)
tAAAGTATTGGCACCCGATACGGCAGGGGAAAtttt > 1:5376397/1‑36 (MQ=37)
tAAAGTATTGGCACCCGATACGGCA.GGGAAATTTTa > 1:937759/1‑36 (MQ=255)
aaaGTATTGGCACCCGATACGGCA.GGGAAATTTTAc > 1:7144745/1‑36 (MQ=255)
aaaGTATTGGCACCCGATACGGCA.GGGAAATTTTAc < 1:3948575/36‑1 (MQ=255)
aaGTATTGGCACCCGATACGGCA.GGGAAATTTTAcc < 1:644396/36‑1 (MQ=255)
aaGTATTGGCACCCGATACGGCA.GGGAAATTTTAcc < 1:2361860/36‑1 (MQ=255)
gTATTGGCACCCGATACGGCA.GGGGAATTTTAcccc > 1:2078261/1‑36 (MQ=255)
gTATTGGCACCCGATACGGCA.GGGAAATTTTAcccc > 1:2069066/1‑36 (MQ=255)
gTATTGGCACCCGATACGGCA.GGGAAATTTTAcccc > 1:6388528/1‑36 (MQ=255)
gTATTGGCACCCGATACGGAA.GGGAAATTTTAcccc > 1:573892/1‑36 (MQ=255)
tATTGGCACCCGATACGGCA.TGTAAATTTTACCCCa < 1:1166996/36‑1 (MQ=38)
tATTGGCACCCGATACGGCA.GGGGNATTTTAccccc > 1:3913807/1‑35 (MQ=38)
aTTGGCACCCGATACGGCA.GGGGAATTTTTCCCCaa > 1:2810246/1‑36 (MQ=37)
aTTGGCACCCGATACGGCA.GGGAAATTTTAccccca > 1:3517045/1‑34 (MQ=255)
aTTGGCACCCGATACGGCA.GGGAAATTTTAccccca > 1:2504212/1‑34 (MQ=255)
aTTGGCACCCGATACGGCA.GGGAAATTTTACCCCaa > 1:7302616/1‑36 (MQ=255)
aTTGGCACCCGATACGGCA.GGCGAATTTTActccca > 1:4245390/1‑34 (MQ=18)
ttGGCACCCGATACGGCA.GGGGAATTTTTCCCCCAc > 1:2086333/1‑36 (MQ=25)
ttGGCACCCGATACGGCA.GGGAAATTTTACCCCAAc < 1:434926/36‑1 (MQ=255)
cACCCGATACGGCA.GGGAAATTTTACCCCAACCAgg > 1:6661431/1‑36 (MQ=255)
cccGATACGGCA.GGGGAATTTTACCCCAACCAGGAt > 1:1657872/1‑36 (MQ=255)
cccGATACGGCA.GGGAAATTTTACCCCAACCAGGAt > 1:3580346/1‑36 (MQ=255)
accGATCCGGCA.GGGAAATGTTACCCCAACCAGGAt > 1:3602229/2‑36 (MQ=37)
ccGATACGGCA.GGNGAATTTTACCCCAACCAGGAtt > 1:3250531/1‑36 (MQ=255)
ccGATACGGCA.GGGAAATTTTACCCCAACCAGGAtt < 1:6612462/36‑1 (MQ=255)
aTACGGCA.GGGAAATTTTACCCCAACCAGGATTGCa > 1:7290665/1‑36 (MQ=255)
aTACGGCA.GGGAAATTTTACCCCAACCAGGATTGCa > 1:3118741/1‑36 (MQ=255)
tACGGCA.GGGAAATTTTACCCCAACCAGGATTGCag < 1:3175570/36‑1 (MQ=255)
aCGGCA.GGGAAATTTTACCCCAACCAGGATTGCagt > 1:6773472/1‑36 (MQ=255)
ctgCA.GGGAAATTTTGCCCCCGCCAGGATTGCcgta < 1:1012508/34‑1 (MQ=16)
cGGCA.GGGAAATTTTACCCCACCCAGGATTGCagta < 1:3757902/36‑1 (MQ=255)
cGGCA.GGGAAATTTTACCCCAACCAGGATTGCagta > 1:6352132/1‑36 (MQ=255)
gCA.GGGAAATTTTACCCCAACCAGGATTGCagtagt < 1:2788818/36‑1 (MQ=255)
a.GGGAAATTTTACCCCAACCAGGATTGCAGTAGttt > 1:1193330/1‑36 (MQ=255)
gggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg > 1:7165312/1‑36 (MQ=255)
gggAAATTTTACCCCAACCAGGATTGCAGTAGTTTg > 1:3352026/1‑36 (MQ=255)
ggAAATTTTACCCCAACCAGGATTGCAGTAGTTTgg < 1:4999704/36‑1 (MQ=255)
gAAATTTTTCCCCAACCAGGATTGCAATAGTTTggg < 1:128388/36‑1 (MQ=37)
gAAATTTTACCCCAACCAGGATTGCAGTAGTTTggg > 1:7014216/1‑36 (MQ=255)
|
CGCCGACTAAAGTATTGGCACCCGATACGGCA.GGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGG > REL606/218745‑218814
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|