Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,304,275 | 0 | C→A | 16.4% | 5.9 ‑17.0 0.0 | 92 | 400 | sspB | ClpXP protease specificity‑enhancing factor |
Rejected: Prediction has biased read strand distribution supporting polymorphism. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/18): ref base (50/23): total (50/42) | ||||||||||
Fisher's exact test strand distribution p-value = 4.28e-08 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
Only 100 of 101 total aligned reads displayed.
ATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGATG > REL606/3304240‑3304310
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aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc < 1:395794/36‑1 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc < 1:4064381/36‑1 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc < 1:2721306/36‑1 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc > 1:7414375/1‑36 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc < 1:7435873/36‑1 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc > 1:7478239/1‑36 (MQ=255)
aTGAGTGTCATCATCGTGATCTGGCTTGTCGCCATc < 1:5342932/36‑1 (MQ=255)
tGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCa < 1:6534376/36‑1 (MQ=255)
tGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCa < 1:350849/36‑1 (MQ=255)
gAGTGTCATCATCGTGATCTGGCTTGTCGCCATCaa > 1:7885704/1‑36 (MQ=255)
gAGTGTCATCATCGTGATCTGGCTTGTCGCCATCaa < 1:135077/36‑1 (MQ=255)
gAGTGTCATCATCGTGATCTGGCTTGTCGCCATCaa > 1:2636077/1‑36 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt > 1:746019/1‑36 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt > 1:2149307/1‑36 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt > 1:4336986/1‑36 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt > 1:2547961/1‑36 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt < 1:6027099/36‑1 (MQ=255)
aGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt < 1:6389772/36‑1 (MQ=255)
gtgtCCTCATCGTGATCTGGCTTGTCGCCATCAATa < 1:7540031/36‑1 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa > 1:3030663/1‑36 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa < 1:407909/36‑1 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa < 1:2895319/36‑1 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa > 1:6415661/1‑36 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa < 1:5856313/36‑1 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa > 1:2252107/1‑36 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa < 1:7699081/36‑1 (MQ=255)
gtgtCATCATCGTGATCTGGCTTGTCGCCATCAATa < 1:5711536/36‑1 (MQ=255)
tgtCATCATCGTGATCTGGCTTGTCGCCATCAATaa < 1:3135766/36‑1 (MQ=255)
tgtCATCATCGTGATCTGGCTTGTCGCCATCAATaa > 1:3936755/1‑36 (MQ=255)
tgtCATCATCGTGATCTGGCTTGTCGCCATCAATaa < 1:1707258/36‑1 (MQ=255)
gtCATCATCGTGATCTGGCTTGTCGCCATCAATAAc < 1:5913987/36‑1 (MQ=255)
gtCATCATCGTGATCTGGCTTGTCGCCATCAATAAc > 1:216557/1‑36 (MQ=255)
tcatcaTCGTGATCTGGCTTGTCGCCATCAATAAcc > 1:3059715/1‑36 (MQ=255)
tcatcaTCGTGATCTGGCTTGTCGCCATCAATAAcc > 1:5672010/1‑36 (MQ=255)
tcatcaTCGTGATCTGGCTTGTCGCCATCAATAAcc < 1:5593206/36‑1 (MQ=255)
tcatcaTCGTGATCTGGCTTGTCGCCATCAATAAcc > 1:7291229/1‑36 (MQ=255)
catcatCGTGATCTGGCTTGTCGCCATCAATAACCg < 1:7006990/36‑1 (MQ=255)
catcatCGTGATCTGGCTTGTCGCCATCAATAACCg < 1:6430463/36‑1 (MQ=255)
catcatCGTGATCTGGCTTGTCGCCATCAATAACCg < 1:1338320/36‑1 (MQ=255)
tcatcGTGATCTGGCTTGTCGCCATCAATAACCGAc > 1:4954796/1‑36 (MQ=255)
tcatcGTGATCTGGCTTGTCGCCATCAATAACCGAc < 1:3692636/36‑1 (MQ=255)
catcGTGATCTGGCTTGTCGCCATCAATAACCGACa > 1:7235860/1‑36 (MQ=255)
catcGTGATCTGGCTTGTCGCCATCAATAACCGACa > 1:5306040/1‑36 (MQ=255)
atcGTGATCTGGCTTGTCGCCATCAATAACCGACAt > 1:3494842/1‑36 (MQ=255)
atcGTGATCTGGCTTGTCGCCATCAATAACCGACAt > 1:3015127/1‑36 (MQ=255)
atcGTGATCTGGCTTGTCGCCATAAATAACCGACAt < 1:2549628/36‑1 (MQ=255)
tcGTGATCTGGCTTGTCGCCATCAATAACCGACATa > 1:4122086/1‑36 (MQ=255)
tcGTGATCTGGCTTGTCGCCATCAATAACCGACATa > 1:2823853/1‑36 (MQ=255)
tcGTGATCTGGCTTGTCGCCATCAATAACCGACATa > 1:4796643/1‑36 (MQ=255)
cGTGATCTGGCTTGTCGCCATCAATAACCGACATaa > 1:7228444/1‑36 (MQ=255)
cGTGATCTGGCTTGTCGCCATCAATAACCGACATaa > 1:4478399/1‑36 (MQ=255)
gTGATCTGGCTTGTCGCCATCAATAACCGACATAAc > 1:4945108/1‑36 (MQ=255)
gTGATCTGGCTTGTCGCCATCAATAACCGACATAAc > 1:911624/1‑36 (MQ=255)
tGATCTGGCTTGTCGCCATCAATAACCGACATAACg > 1:730915/1‑36 (MQ=255)
tGAGCTGGCTTGTCGCAATAAATAACCGACATAACg < 1:199519/36‑1 (MQ=25)
gATCTGGCTTGTCGCCATCAATAACCGACATAACgg > 1:91334/1‑36 (MQ=255)
gATCTGGCTTGTCGCCATCAATAACCGACATAACgg > 1:30515/1‑36 (MQ=255)
gATCTGGCTTGTCGCCATAAATAACCGACATAACgg < 1:1424257/36‑1 (MQ=255)
aTCTGGCTTGTCGCCATCAATAACCGACATAACGGt > 1:1271938/1‑36 (MQ=255)
aTCTGGCTTGTCGCCATCAATAACCGACATAACGGt > 1:1284563/1‑36 (MQ=255)
aTCTGGCTTGTCGCCATCAATAACCGACATAACGGt > 1:1741161/1‑36 (MQ=255)
aTCTGGCTTGTCGCCATCAATAACCGACATAACGGt > 1:217338/1‑36 (MQ=255)
aTCTGGCTTGTCGCAATAAATAACCGACATAACGGt < 1:3090/36‑1 (MQ=37)
tCTGGCTTTTCACCATAAATAACCGACATAACGGtt < 1:3009931/36‑1 (MQ=25)
tCTGGCTTGTCGCCATCAATAACCGACATAACGGtt > 1:3222644/1‑36 (MQ=255)
cTGGCTTGTCGCCATAAATAACCGACATAACGGttt < 1:7255935/36‑1 (MQ=255)
cTGGCTTGTCCCAATAAATAACCGACATAACGGttt < 1:2079243/36‑1 (MQ=25)
cTGGCTTGGCTCCATAAATACCCGACATAACGGttt < 1:6227448/36‑1 (MQ=19)
ttgCTTGCCTCAATCAATAACCGACATAACGGTTTc < 1:4946301/34‑1 (MQ=25)
tGGCTTGTCGCCATAAATAACCGACATAACGGTTTc < 1:4184535/36‑1 (MQ=255)
tGGCTGGCCGCCAACAATAACCGACATAACGGTTTc < 1:3272834/36‑1 (MQ=21)
ggCTTGTCGCCATCAATAACCGACATAACGGTTTCg > 1:1695675/1‑36 (MQ=255)
gCTTGTCGCCATCAATAACCGACATAACGGTTTCGt > 1:5104467/1‑36 (MQ=255)
gCTTGTCGCCATCAATAACCGACATAACGGTTTCGt > 1:2018078/1‑36 (MQ=255)
ctcgTCCCCATCAAAAACCGACATAACGGTTTCGtt < 1:531102/33‑1 (MQ=25)
cTTGTCGCCATCAATAACCGACATAACGGTTTCGtt > 1:3325210/1‑36 (MQ=255)
cTTGTCGCCATCAATAACCGACATAACGGTTTCGtt > 1:7542759/1‑36 (MQ=255)
cTTGTCGCCATCAATAACCGACATAACGGTTTCGtt > 1:7311384/1‑36 (MQ=255)
cTTGTCGCAATAAATAACCGACATAACGGTTTCGtt < 1:4244552/36‑1 (MQ=37)
cTTGTCCCAATAAATAACCGACATAACGGTTTCGtt < 1:7569599/36‑1 (MQ=25)
ttttCGCCAAAAAAAACCGACATAACGGTTTCGTTg < 1:4640114/33‑1 (MQ=16)
ttGTCGCCATCAATAACCGACATAACGGTTTCGTTg > 1:6095399/1‑36 (MQ=255)
ttGTCGCAATAAATAACCGACATAACGGTTTCGTTg < 1:3465149/36‑1 (MQ=37)
ctGTCGCCATCAATAACCGACATAACGGTTTCGttt > 1:2769352/2‑35 (MQ=255)
tgccGCAATGAATAACCGACATAACGGTTTCGTTGt < 1:2539344/33‑1 (MQ=37)
tGTCGCCATACAAAACCGACATAACGGTTTCGTTGt < 1:7020817/36‑1 (MQ=25)
gTCGCCATCAATAACCGACATAACGGTTTCGTTGTc > 1:2018713/1‑36 (MQ=255)
gTCGCAATAAATAACCGACATAACGGTTTCGTTGTc < 1:3277653/36‑1 (MQ=37)
tCGCCATCAATAACCGACATAACGGTTTCGTTGTCt > 1:7833325/1‑36 (MQ=255)
tCGCCATCAATAACCGACATAACGGTTTCGTTGTCt > 1:7908070/1‑36 (MQ=255)
cGCCATAAATAACCGACATAACGGTTTCGTTGTCTg < 1:6353298/36‑1 (MQ=255)
cGCCATAAATAACCGACATAACGGTTTCGTTGTCTg < 1:6108165/36‑1 (MQ=255)
gcaaTCAATAACCGACATAACGGTTTCGTTGTCTGc < 1:3364523/33‑1 (MQ=255)
gCCATCAATAACCGACATAACGGTTTCGTTGTCTGc > 1:5188149/1‑36 (MQ=255)
gCCATCAATAACCGACATAACGGTTTCGTTGTCTGc > 1:6237627/1‑36 (MQ=255)
gCCATCAATAACCGACATAACGGTTTCGTTGTCTGc > 1:4853726/1‑36 (MQ=255)
ccATCAATAACCGACATAACGGTTTCGTTGTCTGcc > 1:3551894/1‑36 (MQ=255)
ccATAAAAAACCGACATAACGGTTTCGTTGTCTGcc < 1:1939806/36‑1 (MQ=38)
acAATACCCGACATAACGGTTTCGTTGTCTGCCGAt < 1:5804564/35‑1 (MQ=255)
cAATAACCGACATAACGGTTTCGTTGTCTGCCGATg > 1:4808604/1‑36 (MQ=255)
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ATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGATG > REL606/3304240‑3304310
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
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