Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 3,875,625 +T 100% intergenic (‑59/+294) glmU ← / ← atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,875,6251.→T100.0% 31.2 9intergenic (‑59/+294)glmU/atpCbifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
Reads supporting (aligned to +/- strand):  new base (6/3):  ref base (0/0):  total (6/3)

AACGAATTTAAACCGCTTCACCTTGAAAAAACTACA..TTTTTTTCATCGTGAAATGGACAGAGGATA  >  REL606/3875590‑3875655
                                    |                               
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                  >  1:3874849/1‑36 (MQ=255)
aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACa                                  <  1:2278879/36‑1 (MQ=255)
 aCGAATTTAAACCGCTTCACCTTGAAAAAACTACA..t                               >  1:5381201/1‑36 (MQ=255)
  cGAATTTAAACCGCTTCACCTTGAAAAAACTACA..tt                              >  1:1121723/1‑36 (MQ=255)
  cGAATTTAAACCGCTTCACCTTGAAAAAACTACA..tt                              >  1:1837147/1‑36 (MQ=255)
   gAATTTAAACCGCTTCACCTTGAAAAAACTACA..ttt                             >  1:2756323/1‑36 (MQ=255)
    aaTTTAAACCGCTTCACCTTGAAAAAACTACA..tttt                            >  1:3811989/1‑36 (MQ=255)
    aaTTTAAACCGCTTCACCTTGAAAAAACTACA..tttt                            >  1:1329776/1‑36 (MQ=255)
    aaTTTAAACCGCTTAACCTTGAAAAAACTACA..tttt                            >  1:1105466/1‑36 (MQ=255)
     aTTTAAACCGCTTCACCTTGAAAAAACTACA..ttttt                           <  1:1562133/36‑1 (MQ=255)
     aTTTAAACCGCTTCACCTTGAAAAAACTACA..ttttt                           >  1:1013000/1‑36 (MQ=255)
      tttAAACCGCTTCACCTTGAAAAAACTACA..tttttt                          >  1:87892/1‑36 (MQ=255)
        tAAACCGCTTCACCTTGAAAAAACTACA..tttttttt                        >  1:1165167/1‑35 (MQ=255)
         aaaCCGCTTCACCTTGAAAAAACTACA..ttttttttc                       <  1:5639416/36‑3 (MQ=255)
          aaCCGCTTCCCCTTGAAAAATCTTCA..ttttttttca                      <  1:233337/36‑4 (MQ=19)
               cTTCACCTTGAAAAAACTACAT.TTTTTTTCATCGTg                  >  1:1835087/1‑36 (MQ=37)
                     cTTGAAAAAACTACAT.TTTTTTTCATCGTGAAATgg            >  1:1179230/1‑36 (MQ=37)
                        gAAAAAACTACATTTTTTTTTCATCGTTAAATGGat          >  1:774209/1‑35 (MQ=16)
                        gAAAAAACTACAT.TTTTTTTCATCGTGAAATGGACa         <  1:1417969/36‑1 (MQ=37)
                         aaaaaaCTACAT.TTTTTTTCATCGTGAAATGGACag        <  1:1185188/36‑1 (MQ=37)
                            aaaCTACAT.TTTTTTTCATCGTGAAATGGACAGAgg     >  1:4003947/1‑36 (MQ=37)
                             aaCTACAT.TTTTTTTCATCGTGAAATGTACAGAGGa    >  1:4125971/1‑36 (MQ=25)
                              aCTACAT.TTTTTTTCATCGTGAAATGGACAGAGGAt   <  1:1102488/36‑1 (MQ=37)
                               cTACAT.TTTTTTTCATCGTGAAATGGACAGAGGATa  >  1:2354094/1‑36 (MQ=37)
                                    |                               
AACGAATTTAAACCGCTTCACCTTGAAAAAACTACA..TTTTTTTCATCGTGAAATGGACAGAGGATA  >  REL606/3875590‑3875655

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 37 ≤  ATCG