Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 179,945 | +G | 4.8% | coding (522/624 nt) | yadS ← | conserved inner membrane protein |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 179,945 | 1 | .→G | 4.8% | 3.9 ‑1.4 0.0 | 63 | coding (522/624 nt) | yadS | conserved inner membrane protein |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (30/30): total (33/30) | ||||||||||
Fisher's exact test strand distribution p-value = 2.40e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
ATCAATAGCGTCACGACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGCCG > REL606/179910‑179979
|
aTCAATAGCGTCACGACCATGCCCATCATACTGGCt < 1:6561838/36‑1 (MQ=255)
aTCAATAGCGTCACGACCATGCCCATCATACTGGCt > 1:181290/1‑36 (MQ=255)
aTCAATAGCGTCACGACCATGCCCATCATACTGGCt < 1:6813636/36‑1 (MQ=255)
aTCAATAGCGTCACGACCATGCCCATCATACTGGCt < 1:7403600/36‑1 (MQ=255)
aTCAATAGCGTCACGACCATGCCCATCATACTGGCt < 1:7320314/36‑1 (MQ=255)
tCAATAGCGTCACTACCATGCCCATCATACTGGCT.g < 1:2409191/36‑1 (MQ=255)
tCAATAGCGTCACGACCATGCCCATCATACTGGCT.g < 1:7968654/36‑1 (MQ=255)
taaTAGCGTCACGACCATGCCCATCATACTGGCT.G.t < 1:6557178/35‑1 (MQ=255)
taaTAGCGTCACGACCATGCCCATCATACTGGCT.G.t < 1:7247958/35‑1 (MQ=255)
cAATAGCGTCACGACCATGCCCATCATACTGGCT.gg > 1:2681691/1‑35 (MQ=255)
cAATAGCGTCACGACCATGCCCATCATACTGGCT.gg > 1:7461641/1‑35 (MQ=255)
aaTAGCGTCACGACCATGCCCATCATACTGGCT.G.tt < 1:3470134/36‑1 (MQ=255)
aaTAGCGTCACGACCATGCCCATCATACTGGCT.G.tt < 1:1324355/36‑1 (MQ=255)
aTAGCGTCACGACCATGCCCATCATACTGGCT.gggt > 1:4927482/1‑33 (MQ=255)
tAGCGTCACGACCATGCCCATCATACTGGCT.G.TTTc < 1:1694629/36‑1 (MQ=255)
aGCGTCACGACCATGCCCATCATACTGGCT.G.gtttc > 1:1492315/1‑34 (MQ=38)
gCGTCACGACCATGCCCATCCTACTGGCT.G.ttttcc > 1:4310210/1‑33 (MQ=37)
gCGTCACGACCATGCCCATCATACTGGCT.G.gtttgc > 1:7608117/1‑33 (MQ=37)
gCGTCACGACCATGCCCATCATACTGGCT.G.TTTCCa < 1:3598916/36‑1 (MQ=255)
gCGTCACGACCATGCCCATCATACTGGCT.G.TTTCCa < 1:405049/36‑1 (MQ=255)
gCGTCACGACCATGCCCATCATACTGGCT.G.GTTccc > 1:7685222/1‑35 (MQ=255)
gCGTCACGACCATGCCCATCATACTGGCT.G.GTTTCa > 1:2038529/1‑36 (MQ=37)
cGTCACGACCATGCCCATCATACTGGCTGG.TTTccg > 1:6277935/1‑35 (MQ=37)
gTCACGACCATGCCCATCATACTGGCTGG.TTTccgt > 1:4393700/1‑34 (MQ=25)
gTCACGACCATGCCCATCATACTGGCTGG.TTTccct > 1:7187834/1‑34 (MQ=37)
gTCACGACCATGCCCATCATACTGGCT.G.TTTCCAGt < 1:97151/36‑1 (MQ=255)
gTCACGACCATGCCCATCATACTGGCT.G.TTTCCAGt < 1:2615436/36‑1 (MQ=255)
tCACGACCATGCCCATCATACTGGCT.G.GTTCCCGTg > 1:707176/1‑36 (MQ=37)
cACGACCATGCCCATCATACTGGCT.GTTTTCCAGTg > 1:6182437/1‑36 (MQ=37)
cACGACCATGCCCATCATACTGGCT.G.TTTCCCGTgg > 1:1889746/1‑36 (MQ=255)
aCGACCATGCCCATCATACTGGCT.G.TTTCCAGTGGt < 1:7338071/36‑1 (MQ=255)
aCGACCATGCCCATCATACTGGCT.G.GTTTCCGTggg > 1:6484258/1‑35 (MQ=21)
aCGACCATGCCCATCATACTGGCT.G.GTTCCCGTGGt > 1:1916690/1‑36 (MQ=37)
cGACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTa > 1:639958/1‑36 (MQ=255)
cGACCATGCCCATCATACTGGCT.G.GTTCCCGTGGTa > 1:2899752/1‑36 (MQ=37)
gACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTAc < 1:6916260/36‑1 (MQ=255)
gACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTAc < 1:4133366/36‑1 (MQ=255)
gACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTAc < 1:3406305/36‑1 (MQ=255)
aCCATGCCCATCATACTGGCT.G.TTTCCAGTGGTACg > 1:8180735/1‑36 (MQ=255)
aCCATGCCCATCATACTGGCT.G.GTACCAGTGGTTCg > 1:830803/1‑36 (MQ=25)
ccATGCCCATCATACTGGCT.G.TTTCCCGTGGTACgg > 1:2232745/1‑36 (MQ=255)
cATGCCCATCATACTGGCT.G.TTTTCCGTGGTACggg > 1:4634689/1‑35 (MQ=37)
cATGCCCATCATACTGGCT.G.TTTCCAGTGGTACGGa < 1:1977095/36‑1 (MQ=255)
aTGCCCATCATACTGGCT.G.TTTCCATTGGTACGGaa < 1:7304446/36‑1 (MQ=255)
aTGCCCATCATACTGGCT.G.TTTCCAGTGGTACGGaa < 1:3071262/36‑1 (MQ=255)
aTGCCCATCATACTGGCT.G.TTTCCAGTGGTACGGaa < 1:4625143/36‑1 (MQ=255)
gCCCATCATACTGGCT.G.TTTCCCGTGGTACGGgaaa > 1:4621020/1‑36 (MQ=37)
gCCCATCATACTGGCT.G.TTTCCAGTGGTACGGaaaa < 1:942097/36‑1 (MQ=255)
gCCCATCATACTGGCT.G.TTTCCAGTGGTACGGaaaa < 1:3593305/36‑1 (MQ=255)
gCCCATCATACTGGCT.G.GTTCCCGTGGTTCGGgaaa > 1:6661600/1‑36 (MQ=16)
gCCCATCATACTGGCT.G.GTTCCCGTGGTACGGaaaa > 1:7518707/1‑36 (MQ=37)
cccATCATACTGGCT.G.TTTCCAGTGGTACGGAAAAt < 1:1675734/36‑1 (MQ=255)
cccATCATACTGGCT.G.GTTTCAGTGGTACGGAAAAt > 1:4375574/1‑36 (MQ=37)
ccATCATACTGGCT.G.TTTCCAGTGGTACGGAAAAtt > 1:7374234/1‑35 (MQ=255)
ccATCATACTGGCT.G.GTTCCAGTGGTGCGGAAAAtg > 1:7709891/1‑36 (MQ=37)
catcatACTGGCT.G.TTTCCAGTGGTACGGAAAAtgt < 1:1749110/36‑1 (MQ=255)
tcatACTGGCT.G.TTTCCAGTGGTACGGAAAAtgttt > 1:4851171/1‑34 (MQ=255)
tcatACTGGCT.G.TTTCCAGTGGTACGGAAAATgtgt < 1:8023068/36‑1 (MQ=255)
catACTGGCT.G.TTTCCAGTGGTACGGGAAATGGGta > 1:8299303/1‑36 (MQ=37)
aCTGGCT.G.TTTCCAGTGGTACGGAAAATGTGtaata < 1:2134382/36‑1 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc > 1:5023858/1‑36 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc < 1:5794434/36‑1 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc > 1:8005240/1‑36 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc > 1:7424152/1‑36 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc < 1:197869/36‑1 (MQ=255)
ggCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGc > 1:4424491/1‑36 (MQ=255)
gCT.G.TTTCCAGTGGTACGTAAAATGTGTAATAAGcc < 1:6248526/36‑1 (MQ=255)
gCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGcc < 1:2832104/36‑1 (MQ=255)
gCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGcc < 1:1963000/36‑1 (MQ=255)
gCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGcc < 1:2386130/36‑1 (MQ=255)
gCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGcc > 1:5517056/1‑36 (MQ=255)
gCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGcc > 1:7172456/1‑36 (MQ=255)
cT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGCCg < 1:6012111/36‑1 (MQ=255)
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ATCAATAGCGTCACGACCATGCCCATCATACTGGCT.G.TTTCCAGTGGTACGGAAAATGTGTAATAAGCCG > REL606/179910‑179979
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|