Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp 92.9% coding (573‑575/1041 nt) ynjI ← predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 590471NA (NA)51 (0.900) 31/64 NT 89.5% noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 6 (0.100)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =2 (0.040)54 (0.960) 37/64 NT 96.4% coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 124 total aligned reads displayed.

CCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821493‑1821562
                                  |                                   
cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                    >  1:577289‑M2/1‑35 (MQ=255)
atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    >  1:4412053‑M1/33‑36 (MQ=255)
atttcatcgtccaacaaaatgggtgcagtacaTGGt                                    >  1:1495376‑M1/33‑36 (MQ=255)
 tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   <  1:294064‑M1/5‑1 (MQ=255)
 tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   <  1:8033425‑M1/5‑1 (MQ=255)
 tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                   >  1:7932173‑M1/32‑36 (MQ=255)
 ctccATGTTTGCTTTAAAGGTATTGGCTCCATGGtg                                   <  1:5487475‑M2/36‑3 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTggtgt                                  >  1:5603750‑M1/31‑34 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:1036401‑M1/6‑1 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  >  1:811096‑M1/31‑36 (MQ=255)
  ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                  <  1:6347382‑M1/6‑1 (MQ=255)
  tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                  >  1:3542250‑M2/1‑33 (MQ=255)
  tccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgt                                  >  1:1834476‑M2/1‑33 (MQ=255)
   tcatcgtccaacaaaatgggcgcagtacaTGGTCGc                                 <  1:8456442‑M1/7‑1 (MQ=255)
   ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgta                                 <  1:6610875‑M2/36‑5 (MQ=255)
   ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgta                                 >  1:882895‑M2/1‑32 (MQ=255)
    cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                                <  1:4727906‑M2/36‑6 (MQ=255)
      tGTTTGCTTTAAAGGTATTGGCTCCATGGtgtactg                              >  1:4293151‑M2/1‑29 (MQ=255)
       gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                             >  1:6686219‑M2/1‑28 (MQ=255)
       cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                             <  1:4008765‑M1/11‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            <  1:5893589‑M1/12‑1 (MQ=255)
        gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                            >  1:7391684‑M1/25‑36 (MQ=255)
         ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:2886011‑M2/1‑26 (MQ=255)
         ttGCTATAAAGGTATTGGCTCCATGGtgtactgacc                           >  1:2290399‑M2/1‑26 (MQ=255)
         tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                           >  1:6437998‑M1/24‑36 (MQ=255)
         tccaacaaaatgggtgcagtacaTGGTCGCCagaaa                           >  1:2674739‑M1/24‑36 (MQ=255)
          tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                          <  1:2648941‑M2/36‑12 (MQ=255)
          tGCTTTAAAGGTATTGGCTCCATGGtgtactgaccc                          <  1:6259013‑M2/36‑12 (MQ=255)
          ccaacaaaatgggtgcagtacaTGGTCGCCagaaag                          <  1:1899667‑M1/14‑1 (MQ=255)
          ccaacaaaatgggcgcagtacaTGGTCGCCagaaag                          <  1:964202‑M1/14‑1 (MQ=255)
           caacaaaatgggtgcagtacaTGGTCGCCagaaaga                         <  1:6701061‑M1/15‑1 (MQ=255)
           caacaaaatgggtgcagtacaTGGTCGCCagaaaga                         >  1:387179‑M1/22‑36 (MQ=255)
            cTTTAAAGGTATTGGCTCCATGGTCGCCagaaagaa                        <  1:8114253/36‑1 (MQ=255)
            aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        <  1:7900082‑M1/16‑1 (MQ=255)
            aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        <  1:5104438‑M1/16‑1 (MQ=255)
            aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                        <  1:4579496‑M1/16‑1 (MQ=255)
            aacaaaatgggtgcagcacaTGGTCGCCagaaagaa                        <  1:127176‑M1/16‑1 (MQ=255)
             acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:6811842‑M1/17‑1 (MQ=255)
             acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:7409687‑M1/17‑1 (MQ=255)
             acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:8317570‑M1/17‑1 (MQ=255)
             acaaaatgggtgcagtacaTGGTCGCCAgaaagaaa                       <  1:1072753‑M1/17‑1 (MQ=255)
              ttAAAGGTATTGGCTCCATGGtgtactgaccccaaa                      >  1:3264647‑M2/1‑21 (MQ=255)
              ttAAAGGTATTGGCTCCATGGtgtactgaccccaaa                      <  1:7462325‑M2/36‑16 (MQ=255)
              caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                      >  1:5054637‑M1/19‑36 (MQ=255)
               tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                     <  1:3915687‑M2/36‑17 (MQ=255)
               aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                     <  1:5787654‑M1/19‑1 (MQ=255)
                aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    <  1:5201900‑M1/20‑1 (MQ=255)
                aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                    <  1:5026240‑M1/20‑1 (MQ=255)
                 aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                   <  1:7902749‑M1/21‑1 (MQ=255)
                 aaGGTATTGGCTCCATGGtgtactgaccccaaaaag                   >  1:2752268‑M2/1‑18 (MQ=255)
                   tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc                 <  1:5656971‑M1/23‑1 (MQ=255)
                   ggTATTGGCTCCATGGtgtacttaccccaaaaagtt                 <  1:4854135‑M2/36‑21 (MQ=255)
                   ggTATTGGCTCCATGGtgtactgaccccaaaaagtt                 >  1:2176114‑M2/1‑16 (MQ=255)
                    gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc                >  1:7004431‑M1/13‑36 (MQ=255)
                    gTATTGGCTCCATGGtgtactgaccccaaaaagttg                <  1:5203168‑M2/36‑22 (MQ=255)
                    gTATTGGCTCCATGGtgtactgaccccaaaaagttg                >  1:5492795‑M2/1‑15 (MQ=255)
                    gTATTGGCTCCATGGtgtactgaccccaaaaagttg                >  1:5233535‑M2/1‑15 (MQ=255)
                    gTATTGGCTCCATGGtgtactgaccccaaaaagttg                >  1:66789‑M2/1‑15 (MQ=255)
                      aTTGGCTCCATGGtgtactgaccccaaaaagttgga              >  1:69965‑M2/1‑13 (MQ=255)
                      aTTGGCTCCATGGtgtactgaccccaaaaagttgga              >  1:3239650‑M2/1‑13 (MQ=255)
                      aTTGGCTCCATGGtgtactgaccccaaaaagttgga              >  1:6000936‑M2/1‑13 (MQ=255)
                       ttGGCTCCATGGtgtactgaccccaaaaagttggac             >  1:1602284‑M2/1‑12 (MQ=255)
                       tgcagtacaTGGTCGCCATAAAGAAAATGCTCCAtt             >  1:2778848‑M1/10‑36 (MQ=255)
                        tGGCTCCATGGtgtactgaccccaaaaagttggaca            >  1:1379075‑M2/1‑11 (MQ=255)
                        gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            <  1:6629796‑M1/28‑1 (MQ=255)
                        gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa            >  1:5224545‑M1/9‑36 (MQ=255)
                         ggCTCCATGGtgtactgaccccaaaaagttggacag           >  1:6026328‑M2/1‑10 (MQ=255)
                          gCTCCATGGtgtactgaccccaaaaagttggacagt          >  1:2351307‑M2/1‑9 (MQ=255)
                          gCTCCATGGtgtactgaccccaaaaagttggacagt          <  1:3533066‑M2/36‑28 (MQ=255)
                          agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg          >  1:3013390‑M1/7‑36 (MQ=255)
                           gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg         <  1:705822‑M1/31‑1 (MQ=255)
                           gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg         >  1:6625882‑M1/6‑36 (MQ=255)
                           gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg         <  1:5382006‑M1/31‑1 (MQ=255)
                           cTCCATGGtgtactgaccccaaaaagttggacagtt         >  1:6208939‑M2/1‑8 (MQ=255)
                            tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc        >  1:940919‑M1/5‑36 (MQ=255)
                            tCCATGGtgtactgaccccaacaagttggacagtta        >  1:3311355‑M2/1‑7 (MQ=255)
                            tCCATGGtgtactgaccccaaaaagttggacagtta        >  1:6518121‑M2/1‑7 (MQ=255)
                             ccATGGtgtactgaccccaaaaagttggacagttaa       >  1:8361593‑M2/1‑6 (MQ=255)
                             ccATGGtgtactgaccccaaaaagttggacagttaa       <  1:1549133‑M2/36‑31 (MQ=255)
                             ccATGGtgtactgaccccaaaaagttggacagttaa       <  1:2423211‑M2/36‑31 (MQ=255)
                             ccATGGtgtactgaccccaaaaagttggacagttaa       <  1:7545518‑M2/36‑31 (MQ=255)
                             acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca       <  1:8315221‑M1/33‑1 (MQ=255)
                              caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac      <  1:1965887‑M1/34‑1 (MQ=255)
                              cATGGtgtactgaccccaaaaagttggacagttaaa      <  1:487499‑M2/36‑32 (MQ=255)
                              cATGGtgtactgaccccaaaaagttggacagttaaa      >  1:8212271‑M2/1‑5 (MQ=255)
                              cATGGtgtactgaccccaaaaagttggacagttaaa      >  1:2317534‑M2/1‑5 (MQ=255)
                              cATGGtgtactgaccccaaaaagttggacagttaaa      >  1:142557‑M2/1‑5 (MQ=255)
                              cATGGtgtactgaccccaaaaagttggacagttaaa      >  1:6770482‑M2/1‑5 (MQ=255)
                               aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca     >  1:137505‑M1/2‑36 (MQ=255)
                                TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    <  1:130505‑M1/36‑1 (MQ=255)
                                TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa    <  1:5408472‑M1/36‑1 (MQ=255)
                                 ggtgtactgaccccaaaaagttggacagttaaacac   <  1:788619‑M2/36‑35 (MQ=255)
                                 ggtgtactgaccccaaaaagttggacagttaaacac   <  1:454432‑M2/36‑35 (MQ=255)
                                 ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   <  1:172139/36‑1 (MQ=255)
                                 ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:7346342/1‑36 (MQ=255)
                                 ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAAt   >  1:1097413/1‑36 (MQ=255)
                                 ggTCGACAGAAAGAAAATGCTCCATTAAGGCACAAt   <  1:8084196/36‑1 (MQ=255)
                                 agtgtactgaccccaaaaagttggacagttaaccac   >  1:6499955‑M2/2‑2 (MQ=255)
                                  gtgtactgaccccaaaaagttggacagttaaacacg  <  1:7173421‑M2/36‑36 (MQ=255)
                                  gtgtactgaccccaaaaagttggacagttaaacacg  <  1:112907‑M2/36‑36 (MQ=255)
                                  |                                   
CCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATA  >  REL606/1821493‑1821562

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG  < 37 ≤  ATCG