Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 232,109 | 0 | G→T | 10.8% | 1.9 ‑5.5 0.0 | 70 | 19 | dkgB | 2,5‑diketo‑D‑gluconate reductase B |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (10/0): ref base (31/29): total (41/29) | ||||||||||
Fisher's exact test strand distribution p-value = 3.91e-03 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TTAAAAGAGGCATATTATGGCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTGAAAGACGACGTTGTT > REL606/232075‑232144
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ttAAAAGAGGCATATTATGGCTATCCCGTCCTTTgg > 1:6664149/1‑36 (MQ=25)
tAAAAGAGGCATATTATGGCTATCCCTGCATTTTGt > 1:5487917/1‑36 (MQ=255)
tAAAAGAGGCATATTATGGCTATCCCTGCATTTGGt < 1:5040447/36‑1 (MQ=255)
tAAAAGAGGCATATTATGGCTATCCACGCATTTTGt > 1:6984533/1‑36 (MQ=255)
aaaaGAGGCATATTATGGCTATCCCTGCATTTGGtt < 1:79775/36‑1 (MQ=255)
aaaaGAGGCATATTATGGCTATCCCTGCATTTGGtt < 1:2998777/36‑1 (MQ=255)
aaaaGAGGCATATTATGGCTATCCCTGCATTTGGtt < 1:3308636/36‑1 (MQ=255)
aaaaGAGGCATATTATGGCTATCCCTGCATTTGGtt < 1:1740484/36‑1 (MQ=255)
aaGAGGCATATTATGGCTATCCCTTCATTTTGTTTa > 1:4697326/1‑36 (MQ=37)
aaGAGGCATATTATGGCTATCCCTGCATTTGGTTTa < 1:1545941/36‑1 (MQ=255)
aaGAGGCATATTATGGCTATCCCTGCATTTGGTTTa < 1:5928196/36‑1 (MQ=255)
aaGAGGCATATTATGGCTATCCCTGCATTTGGTTTa < 1:1391443/36‑1 (MQ=255)
aaGAGGCATATTATGGCTATCCCTGCATTTGGTTTa < 1:4490191/36‑1 (MQ=255)
agagGCATATTATGGCTATTCCTGCATTTTGttttg > 1:5199208/1‑34 (MQ=37)
agagGCATATTATGGCTATCCCTGCATTTGGTTTAg < 1:4504513/36‑1 (MQ=255)
gagGCATATTATGGCTATCCCTGCATTTGGTTTAgg > 1:682304/1‑36 (MQ=255)
agGCATATTATGGCTATCCCTTAATTTGGTTTAGGt > 1:7186045/1‑36 (MQ=37)
ggCATATTATGGCTATCCCTGCTTTTTGTTTAGGTa > 1:1232585/1‑36 (MQ=37)
ggCATATTATGGCTATCCCTGCATTTGGTTTATGTa < 1:3222899/36‑1 (MQ=255)
gCATATTATGGCTAACCCTGCATTTTGTTTTTGTAc > 1:6150836/1‑36 (MQ=19)
cATATTATGGCTATCCCTGCATTTGGTTTAGGTACt < 1:41581/36‑1 (MQ=255)
atatTATGGCTATCCCTGCCTTTTTTTTAGGTACtt > 1:5036428/1‑36 (MQ=25)
atatTATGGCTATCCCTGCATTTTGTTTAGGTACtt > 1:4789615/1‑36 (MQ=255)
atatTATGGCTATCCCTGCATTTGGTTTAGGTACtt > 1:442827/1‑36 (MQ=255)
atatTATGGCTATCCCTGCATTTGGTTTAGGTACtt > 1:4865458/1‑36 (MQ=255)
atatTATGGCTATCCCTGCATTTGGTTTAGGTACtt < 1:959086/36‑1 (MQ=255)
tattatGGCTATCCCTTCATTTTGTTTATGTACttt > 1:1244383/1‑36 (MQ=25)
tattatGGCTATCCCTGCATTTGGTTTAGGTACttt < 1:7090789/36‑1 (MQ=255)
tattatGGCTATCCCTGCATTTGGTTTAGGTACttt < 1:5279031/36‑1 (MQ=255)
tattatGGCTATCCCTGCATTTGGTTTAGGTACttt > 1:6484467/1‑36 (MQ=255)
ttatGGCTATCCCTGCATTTGGTTTAGGTACTTTcc > 1:2341258/1‑36 (MQ=255)
ttatGGCTATCCCTGCATTTGGTTTAGGTACTTTcc < 1:6551098/36‑1 (MQ=255)
ttatGGCTATCCCTGCATTTGGTTTAGGTACTTTcc < 1:5548949/36‑1 (MQ=255)
tatGGCTATCCCTGCCTTTTGTTTAGGTACTTTCCg > 1:1402253/1‑36 (MQ=37)
tatGGCTATCCCTGCATTTGGTTTAGGTATTTTcct > 1:4056367/1‑35 (MQ=255)
atGGCTATCCCTGCATTTGGTTTAGGTACTTTCCGt > 1:5209579/1‑36 (MQ=255)
tGGCTATCCCTGCATTTGGTTTAGGTACTTTCCGTc > 1:7149213/1‑36 (MQ=255)
tGGCTATCCCTGCATTTGGTTTAGGTACTTTCCGTc > 1:4064417/1‑36 (MQ=255)
ggCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCt < 1:2690038/36‑1 (MQ=255)
ggCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCt < 1:1441914/36‑1 (MQ=255)
ggCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCt > 1:1141553/1‑36 (MQ=255)
gCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTg < 1:1959209/36‑1 (MQ=255)
gCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTg < 1:938067/36‑1 (MQ=255)
gCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTg > 1:2557739/1‑36 (MQ=255)
cTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTGa > 1:7857269/1‑36 (MQ=255)
cTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTGa > 1:2656558/1‑36 (MQ=255)
tATCCCTGCATTTGGTTTAGGTACTTTCCGTCTGaa > 1:7616677/1‑36 (MQ=255)
aTCCCTGCATTTGGTTTAGGTACTTTCCGTCTGaaa > 1:5524978/1‑36 (MQ=255)
aTCCCTGCATTTGGTTTAGGTACTTTCCGTCTGaaa > 1:3947992/1‑36 (MQ=255)
aTCCCTGCATTTGGTTTAGGTACTTTCCGTCTGaaa > 1:3074977/1‑36 (MQ=255)
tCCCTGCATTTGGTTTAGGTACTTTCCGTCTGAAAg < 1:854667/36‑1 (MQ=255)
tCCCTGCATTTGGTTTAGGTACTTTCCGTCTGAAAg > 1:274286/1‑36 (MQ=255)
cccTGCATTTGGTTTAGGTACTTTCCGTCTGAAAga > 1:2206258/1‑36 (MQ=255)
ccTGCATTTGGTTTAGGTACTTTCCGTCTGAAAgac > 1:3758374/1‑36 (MQ=255)
ccTGCATTTGGTTTAGGTACTTTCCGTCTGAAAgac < 1:6305565/36‑1 (MQ=255)
cTGCATTTGGTTTAGGTACTTTCCGTCTGAAAgacg > 1:3939468/1‑36 (MQ=255)
tGCATTTGGTTTAGGTACTTTCCGTCTGAAAgacga > 1:258332/1‑36 (MQ=255)
tGCATTTGGTTTAGGTACTTTCCGTCTGAAAgacga > 1:7551706/1‑36 (MQ=255)
gCATTTGGTTTAGGTACTTTCCGTCTGAAAgacgac < 1:2713444/36‑1 (MQ=255)
gCATTTGGTTTAGGTACTTTCCGTCTGAAAgacgac > 1:531046/1‑36 (MQ=255)
gCATTTGGTTTAGGTACTTTCCGTCTGAAAgacgac < 1:6145709/36‑1 (MQ=255)
aTTTGGTTTAGGTACTTTCCGTCTGAAAGACGACgt > 1:7338176/1‑36 (MQ=255)
aTTTGGTTTAGGTACTTTCCGTCTGAAAGACGACgt < 1:1190038/36‑1 (MQ=255)
aTTTGGTTTAGGTACTTTCCGTCTGAAAGACGACgt < 1:7090711/36‑1 (MQ=255)
aTTTGGTTTAGGTACTTTCCGTCTGAAAGACGACgt > 1:6476443/1‑36 (MQ=255)
tttGGTTTAGGTACTTTCCGTCTGAAAGACGACgtt > 1:1950759/1‑36 (MQ=255)
tttGGTTTAGGTACTTTCCGTCTGAAAGACGACgtt < 1:3468858/36‑1 (MQ=255)
tttGGTTTAGGTACTTTCCGTCTGAAAGACGACgtt > 1:1168722/1‑36 (MQ=255)
tttGGTTTAGGTACTTTCCGTCTGAAAGACGACgtt < 1:2459159/36‑1 (MQ=255)
tGGTTTAGGTACTTTCCGTCTGAAAGACGACgttgt > 1:3823013/1‑36 (MQ=255)
tGGTTTAGGTACTTTCCGTCTGAAAGACGACgttgt > 1:780935/1‑36 (MQ=255)
ggTTTAGGTACTTTCCGTCTGAAAGACGACgttgtt > 1:7665328/1‑36 (MQ=255)
ggTTTAGGTACTTTCCGTCTGAAAGACGACgttgtt < 1:3813305/36‑1 (MQ=255)
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TTAAAAGAGGCATATTATGGCTATCCCTGCATTTGGTTTAGGTACTTTCCGTCTGAAAGACGACGTTGTT > REL606/232075‑232144
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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