Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 166,265 | C→A | 10.8% | A437E (GCA→GAA) | hrpB → | predicted ATP‑dependent helicase |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 166,265 | 0 | C→A | 10.8% | 2.5 ‑4.2 ‑0.1 | 37 | 1310 | hrpB | predicted ATP‑dependent helicase |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (23/10): total (23/14) | ||||||||||
Fisher's exact test strand distribution p-value = 1.52e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.90e-01 |
TAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCA > REL606/166230‑166296
|
tAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGc > 1:1526924/1‑36 (MQ=255)
gcgcGAAGAACGACGACGAAGCTGCTACCGCGGCaa < 1:6975496/36‑1 (MQ=255)
gcgcGAAGAACGACGACGAAGCTGCTACCGCGGCaa < 1:4330276/36‑1 (MQ=255)
gcgAAGAACGACGACGAAGCTGCTACCGCGGCaaaa > 1:6474231/1‑36 (MQ=255)
gcgAAGAACGAAGACGAAGCTGCTACCGCGGCaaaa > 1:1649298/1‑36 (MQ=255)
gagaagaaCGACGACGAAGCTGCTACCGCGGCaaaa < 1:674025/34‑1 (MQ=255)
cgAAGAACGACGACGAAGCTGCTACCGCGGCaaaaa < 1:6886520/36‑1 (MQ=255)
cgAAGAACGACGACGAAGCTGCTACCGCGGCaaaaa > 1:2409755/1‑36 (MQ=255)
cgAAGAACGACGACGAAGCTGCTACCGCGGCaaaaa > 1:4178626/1‑36 (MQ=255)
gaagaaCGACGACGAAGCTGCTACCGCGGCAAAAAt < 1:6217225/36‑1 (MQ=255)
gaagaaCGACGACGAAGCTGCTACCGCGGCAAAAAt < 1:5736391/36‑1 (MQ=255)
aagaaCGACGACGAAGCTGCTACCGCGGCAAAAAtt < 1:4696068/36‑1 (MQ=255)
aagaaCGACGACGAAGCTGCTACCGCGGCAAAAAtt > 1:3056454/1‑36 (MQ=255)
agaaCGACGACGAAGCTGCTACCGCGGCAAAAATTg > 1:97417/1‑36 (MQ=255)
gaaCGACGACGAAGCTGCTACCGCGGCAAAAATTgc < 1:7403629/36‑1 (MQ=255)
gaaCGACGACGAAGCTGCTACCGCGGCAAAAATTgc > 1:2724560/1‑36 (MQ=255)
aaCGACGACGAAGCTGCTACCGCGGCAAAAATTgcc > 1:7078150/1‑36 (MQ=255)
aaCGACGACGAAGCTGCTACCGCGGCAAAAATTgcc < 1:2512970/36‑1 (MQ=255)
acgacgacgAAGCTGCTACCGCGGCAAAAATTgccg > 1:2287674/1‑36 (MQ=255)
acgacgacgAAGCTGCTACCGCGGCAAAAATTgccg > 1:5095587/1‑36 (MQ=255)
acgacgacgAAGCTGCTACCGCCGCTAAAATTgccg > 1:5661233/1‑36 (MQ=37)
gacgacgaAGCTGCTACCGCGGCAAAAATTgccgcc > 1:2371941/1‑36 (MQ=255)
gacgacgaAGCTGCTACCGCGGCAAAAATTgccgcc > 1:3006000/1‑36 (MQ=255)
acgacgaAGCTGCTACCGCGGCAAAAATTGCCGCCa > 1:4364946/1‑36 (MQ=255)
acgacgaAGCTGCTACCGCGGCAAAAATTGCCGCCa < 1:542780/36‑1 (MQ=255)
aaagaAGCTGCTACCGGGGAAAAAATTGCCGCCAtt < 1:2428334/33‑1 (MQ=21)
acgaAGCTGCTACCGCGGCAAAAATTGCCGCCATtc > 1:1687846/1‑36 (MQ=255)
gaAGCTGCTACCGCGGCAAAAATTGCCGCCATtctc > 1:2790317/1‑36 (MQ=255)
gctgctACCGCGGCAAAAATTGCCGCCATTCTCgta > 1:5205584/1‑34 (MQ=255)
ctgctACCGCGGCAAAAATTGCCGCCATTCTCGAag > 1:1970918/1‑36 (MQ=255)
tACCGCGGCAAAAATTGCCGCCATTCTCGAAGAgcc > 1:1239840/1‑36 (MQ=255)
tACCGCGGCAAAAATTGCCGCCATTCTCGAAGAgcc > 1:2814249/1‑36 (MQ=255)
aCCGCGGCAAAAATTGCCGCCATTCTCGAAGAgccg > 1:1110900/1‑36 (MQ=255)
gcgcgGAAAAAATTGCCGCCATTCTCGAAGAgccgc < 1:3491030/35‑1 (MQ=255)
cgcgGCAAAAATTGCCGCCATTCTCGAAGAgccgcc > 1:2334177/1‑36 (MQ=255)
gcgGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCa > 1:6099551/1‑36 (MQ=255)
gcgGAAAAAATTGCCGCCATTCTCGAAGAGCCGCCa < 1:537525/36‑1 (MQ=255)
gcgGAAAAAATTGCCGCCATTCTCGAAGAGCCGCCa < 1:3439960/36‑1 (MQ=255)
|
TAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCA > REL606/166230‑166296
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 20 ≤
ATCG
< 30 ≤
ATCG
< 37 ≤
ATCG
|