Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,963,239 | G→T | 8.9% | A295E (GCA→GAA) | araF ← | L‑arabinose transporter subunit |
Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 1,963,239 | 0 | G→T | 8.9% | 3.1 ‑3.5 0.0 | 61 | 884 | araF | L‑arabinose transporter subunit |
Reads supporting (aligned to +/- strand): new base (5/1): ref base (19/36): total (24/37) | ||||||||||
Fisher's exact test strand distribution p-value = 3.07e-02 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
TAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATA > REL606/1963204‑1963273
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tAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTg < 1:6248941/36‑1 (MQ=255)
aCTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCt < 1:7723518/36‑1 (MQ=255)
aCTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCt < 1:3321096/36‑1 (MQ=255)
aCTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCt < 1:4539482/36‑1 (MQ=255)
cTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTa < 1:340255/36‑1 (MQ=255)
cTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTa < 1:1713334/36‑1 (MQ=255)
ttCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAc < 1:7436784/36‑1 (MQ=255)
tCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAcc < 1:4475181/36‑1 (MQ=255)
cGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAccc < 1:6387124/36‑1 (MQ=255)
cGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAccc < 1:6721206/36‑1 (MQ=255)
ggTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCa < 1:6569783/36‑1 (MQ=255)
gTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAg < 1:6020900/36‑1 (MQ=255)
tAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGt < 1:516817/36‑1 (MQ=255)
tAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGt < 1:7405653/36‑1 (MQ=255)
aaaTTTTGGCGGTTCTACGTCTTTTTTTACCCCGtt > 1:1739797/1‑36 (MQ=19)
aaaTTTTGGCGGTTCAACGTCTTTTGCTCCCCAGtt < 1:2847265/36‑1 (MQ=255)
aaaTTTTGGCGGTTCAACGTCTTTTGCTACCCAGtt < 1:7016702/36‑1 (MQ=255)
aaaTTTTGGCGGTTCAACGTCTTTTGCTACCCAGtt < 1:1837458/36‑1 (MQ=255)
aaaTTTTGGCGGTTCAACGTCTTTTGCTACCCAGtt < 1:1548698/36‑1 (MQ=255)
aaTTTTGGCGGTTCTACGTCTTTTTCTTCCCCGttt > 1:3547734/1‑35 (MQ=16)
aaTTTTGGCGGTTCAACGTCTTTTTCTACCCCGttt > 1:7486543/1‑35 (MQ=25)
aaTTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTg < 1:3677341/36‑1 (MQ=255)
aTTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGt < 1:3001442/36‑1 (MQ=255)
tttGGCGGTTCAACGTCTTTTGCTTCCCAGTTGTaa < 1:4245118/36‑1 (MQ=255)
tttGGCGGTTCAACGTCTTTTGCTACCCAGTTGTaa < 1:4823323/36‑1 (MQ=255)
ttGGCGGTTCAACGTCTTTTTCTACCCCGTTGTaaa > 1:5175756/1‑36 (MQ=37)
ttGGCGGTTCAACGTCTTTTGCTACCCAGTTGTaaa < 1:3430953/36‑1 (MQ=255)
tGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAg < 1:3524710/36‑1 (MQ=255)
tGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAg < 1:1815584/36‑1 (MQ=255)
ggCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGc < 1:5634214/36‑1 (MQ=255)
ggCGGTTCAACGGCTTTTTGTACCCAGTTGTGAAGc > 1:1449748/1‑36 (MQ=19)
gCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCa > 1:1925122/1‑36 (MQ=255)
cGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAt > 1:5351157/1‑36 (MQ=255)
cGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAt > 1:2430941/1‑36 (MQ=255)
cGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAt < 1:1041367/36‑1 (MQ=255)
ggTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAtt > 1:4643922/1‑36 (MQ=255)
ggTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAtt > 1:6466858/1‑36 (MQ=255)
gTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAttt < 1:6609993/36‑1 (MQ=255)
gTTCAACGTCTTTTGCTACCCAGTTGTAAAGCAttt > 1:4774969/1‑36 (MQ=255)
cAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGc < 1:1699500/36‑1 (MQ=255)
cAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGc < 1:7276294/36‑1 (MQ=255)
cAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGc < 1:7819777/36‑1 (MQ=255)
aaCGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCt < 1:1442206/36‑1 (MQ=255)
aCGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTg > 1:4374177/1‑36 (MQ=255)
cGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTgg > 1:2203924/1‑36 (MQ=255)
cGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTgg > 1:5676242/1‑36 (MQ=255)
cGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTgg < 1:6296183/36‑1 (MQ=255)
cGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTgg > 1:7320338/1‑36 (MQ=255)
gTCTTTTTCTCCCCATTTGTAAAGCATTTCGCTGGa < 1:4918455/36‑1 (MQ=25)
gTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGa < 1:856376/36‑1 (MQ=255)
gTCTTTTGCTACCCAGTTGTAAAGCATTTCGATGGa > 1:3108463/1‑36 (MQ=255)
tCTTTTGCTACCCAGTTGTAAAGGATTTCGCTGGAt > 1:3367871/1‑36 (MQ=255)
tCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGAt < 1:3074039/36‑1 (MQ=255)
tCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGAt < 1:7888848/36‑1 (MQ=255)
tCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGAt > 1:4163352/1‑36 (MQ=255)
ttttGCTACCTAGTTGTAAAGCATTTCGCTGGAttt > 1:5089720/1‑36 (MQ=255)
ttttGCTACCCAGTTGTAAAGCCTTTCGCTGGAttt < 1:856/36‑1 (MQ=255)
ttttGCTACCCAGTTGTAAAGCATTTCGCTGGAttt > 1:1395945/1‑36 (MQ=255)
ttttGCTACCCAGTTGTAAAGCATTTCGCTGGAttt > 1:2260847/1‑36 (MQ=255)
ttttGCTACCCAGTTGTAAAGCATTTCGCTGGAttt > 1:6896798/1‑36 (MQ=255)
ttGCTACCCAGTTGGAAAGCATTTCGCTGGATTtat > 1:5579714/1‑36 (MQ=255)
tGCTACCCAGTTGTAAAGCATTTCGCTGGATTtata > 1:5340204/1‑36 (MQ=255)
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TAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATA > REL606/1963204‑1963273
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 13 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
|