New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 84006430 (0.630)4 (0.080) 3/58 NT 12.9% coding (566/747 nt) glnH glutamine ABC transporter periplasmic protein
?REL606 = 1619524 24 (0.420)intergenic (‑133/+84) rem/hokD predicted protein/small toxic polypeptide

GAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG  >  REL606/1619491‑1619558
                                 |                                  
gAACTTCAAACGCGTTGAAAATAAAAACAAAAACCC                                  >  1:4464328‑M1/1‑36 (MQ=255)
gAACTTCAAACGCGTTGAAAATAAAAACAAAAACCC                                  <  1:4221451‑M1/36‑1 (MQ=255)
  aCTTCAAACGCGTTGAAAATAAAAACAAAAACCCGC                                >  1:2590491‑M1/1‑36 (MQ=255)
   cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                               <  1:5589427‑M1/36‑1 (MQ=255)
   cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                               >  1:5229521‑M1/1‑36 (MQ=255)
   cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                               <  1:2297480‑M1/36‑1 (MQ=255)
   cTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCC                               >  1:5069320‑M1/1‑36 (MQ=255)
    ttCAAACGCGTTGAAAATAAAAACAAAAACccgccg                              >  1:1670567‑M2/1‑30 (MQ=255)
      cAAACGCGTTGAAAATAAAAACAAAAACCCGCCGaa                            >  1:6743974/1‑36 (MQ=255)
         aCGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCg                         >  1:5570047/1‑36 (MQ=255)
          cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCgg                        >  1:3105687/1‑36 (MQ=255)
           gcgTTGAAAATAAAAACAAAAACCCGCCGAAGCggg                       >  1:5346376/1‑36 (MQ=255)
            cgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGt                      >  1:4919505/1‑36 (MQ=255)
             gTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGtt                     <  1:771021/36‑1 (MQ=255)
              ttGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTa                    <  1:5134496/36‑1 (MQ=255)
               tGAAAATAAAAACGAAAACTCGCCGAAGCGGGTTaa                   >  1:2615088/1‑36 (MQ=25)
               tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                   >  1:5707142/1‑36 (MQ=255)
               tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                   <  1:6173031/36‑1 (MQ=255)
               tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                   <  1:873277/36‑1 (MQ=255)
               tGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTaa                   >  1:2243477/1‑36 (MQ=255)
                gAAAATAAAAACAAAAACCCGCCGAAGCGGGGTAag                  >  1:2072663/1‑36 (MQ=255)
                 aaaaTAAAAACAAAAACCCGCCGAAGCGGGTTAagt                 <  1:5884458/36‑1 (MQ=255)
                    aTAAAAACAAAAACCCGCCGAAGCGGGTTAagtgcg              >  1:2503488/1‑36 (MQ=255)
                     tAAAAACAAAAACCCGCCGAAGCGGGCTAagtgcga             >  1:5391221/1‑36 (MQ=255)
                     tAAAAAAAAAAACccgccggtaacggtcagttcaaa             >  1:118058‑M2/1‑13 (MQ=255)
                      aaaaaaaaaaacccgccggtaacggtcagttcaaag            >  1:5466718‑M2/1‑12 (MQ=255)
                        aaacaaaaacCCGCCtgcctgcaacttattgagagc          <  1:5596001‑M1/36‑22 (MQ=255)
                        aaacaaaaacCCGCCGAAGCGGGTTAagtgcgagtg          >  1:1916457/1‑36 (MQ=255)
                         aacaaaaacCCGCCtgcctgcaacttattgagagcg         <  1:5703673‑M1/36‑23 (MQ=255)
                         aacaaaaacCCGCCGAAGCGGGTTAagtgcgagatc         >  1:1185486/1‑33 (MQ=255)
                          acaaaaacCCGCCGAAGCGGGTTAagtgcgagtgcg        >  1:6131399/1‑36 (MQ=255)
                          aaaaaaacccgccggtaacggtcagttcaaagcggt        >  1:555678‑M2/3‑8 (MQ=255)
                            aaaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGtt      <  1:1140883/36‑1 (MQ=255)
                             aaaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTg     <  1:4744235/36‑1 (MQ=255)
                             aaaaaCCGCCtgcctgcaacttattgagagcgtcga     <  1:5952449‑M1/36‑27 (MQ=255)
                              aaacccgccggtaacggtcagttcaaagcggtaggt    >  1:1254752‑M2/1‑4 (MQ=255)
                              aaacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGa    <  1:2821909/36‑1 (MQ=255)
                               aacCCGCCtgcctgcaacttattgagagcgtcgacg   <  1:2188979‑M1/36‑29 (MQ=255)
                               aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg   >  1:1764635/1‑36 (MQ=255)
                               aacCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAg   <  1:6039803/36‑1 (MQ=255)
                                acCCGCCtgcctgcaacttattgagagcgtcgacgc  <  1:5792264‑M1/36‑30 (MQ=255)
                                acCCGCCtgcctgcaacttattgagagcgtcgacgc  <  1:4967839‑M1/36‑30 (MQ=255)
                                 |                                  
GAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGAGTGCGTTGAGG  >  REL606/1619491‑1619558

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG