Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,159,085 | 0 | C→A | 9.6% | 0.3 ‑11.5 0.0 | 68 | 596 | rplA | 50S ribosomal protein L1 |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (0/8): ref base (49/11): total (49/19) | ||||||||||
Fisher's exact test strand distribution p-value = 1.02e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AACCTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCGTGTACATCAAGA > REL606/4159051‑4159120
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aaCCTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCa > 1:5576679/1‑36 (MQ=255)
aaCCTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCa > 1:1407003/1‑36 (MQ=255)
aCCTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCaa > 1:5007411/1‑36 (MQ=255)
ccTTGAAGCTCTGCTGGTTGCGCTGAAAAAAGCaaa < 1:6037926/36‑1 (MQ=255)
cTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCaaaa < 1:6576102/36‑1 (MQ=255)
cTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCaaaa < 1:2614739/36‑1 (MQ=255)
tGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAc < 1:1058494/36‑1 (MQ=255)
tGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAc > 1:4910552/1‑36 (MQ=255)
tGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAc > 1:384029/1‑36 (MQ=255)
tGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAc > 1:3833465/1‑36 (MQ=255)
tGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAc < 1:3814595/36‑1 (MQ=255)
ggAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAcc > 1:4388001/1‑36 (MQ=255)
ggAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAcc > 1:1860406/1‑36 (MQ=255)
ggAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAAcc > 1:155865/1‑36 (MQ=255)
aaGCTCTGCTGGTTGCGCTGAAAAAAGCAAAACCGa > 1:2498110/1‑36 (MQ=255)
aaGCTCTGCTGGCTGCGCTGAAAAAAGCAAAACCGa > 1:7016736/1‑36 (MQ=255)
aGCTCTGCTGGTTGCGCTGAAAAAAGCAAAACCGAc < 1:5992426/36‑1 (MQ=255)
gCTCTGCTGGTTGCGCTGAAAAAAGCAAAACCGACt > 1:6709210/1‑36 (MQ=255)
ctctGCTGGTTGCGCTGAAAAAAGCAAAACCGACTc > 1:5948365/1‑36 (MQ=255)
tctGCTGGTTGCGCTGAAAAAAGCAAAACCGACTCa > 1:1812002/1‑36 (MQ=255)
ctgctgGTTGCGCTGAAAAAAGCAAAACCGACTCAg < 1:1748304/36‑1 (MQ=255)
ctgctgGTTGCGCTGAAAAAAGCAAAACCGACTCAg > 1:2900312/1‑36 (MQ=255)
ctgctgGTTGCGCTGAAAAAAGCAAAACCGACTCAg > 1:123169/1‑36 (MQ=255)
ctgGTTGCGCTGACAAAAGCAAAACCGACTCAGGCg > 1:3239139/1‑36 (MQ=255)
tgGTTGCGCTGAAAAAAGCAAAACCGACTCAGGCGa > 1:7342907/1‑36 (MQ=255)
tgGTTGCGCTGAAAAAAGAAAAACCGACTCAGGCGa < 1:2468724/36‑1 (MQ=255)
ggTTGCGCTGAAAAAAGCAAAACCGACTCAGGCGaa > 1:6243152/1‑36 (MQ=255)
gTTGCGCTGAAAAAAGCAAAACCGACTCAGGCGaaa > 1:920656/1‑36 (MQ=255)
ttGCGCTGAAAAAAGCAAAAACGACTCAGGCGAAAg > 1:810635/1‑36 (MQ=255)
ttGCGCTGAAAAAAGAAAAACCGACTCAGGCGAAAg < 1:6673116/36‑1 (MQ=255)
tGCGCTGAAAAAAGAAAAACCGACTCAGGCGAAAgg < 1:1235162/36‑1 (MQ=255)
tGCGATGAAAAAAGAAAAACCGACTCAGGCGAAAgg < 1:1163998/36‑1 (MQ=37)
gcgcTGAAAAAAGCAAAGCCGACGCAGGCGAAAGGc < 1:431582/36‑1 (MQ=37)
gcgcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGc > 1:218417/1‑36 (MQ=255)
gcgcTGAAAAAAGAAAAACCGACTCAGGCGAAAGGc < 1:3212076/36‑1 (MQ=255)
gcgcGGAAAAAAGAAAAACCGACTCAGGCGAAAGGc < 1:1485477/36‑1 (MQ=37)
cgcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCg > 1:6202230/1‑36 (MQ=255)
cgcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCg > 1:3609439/1‑36 (MQ=255)
cgcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCg > 1:2402328/1‑36 (MQ=255)
gcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgt > 1:5115089/1‑36 (MQ=255)
gcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgt > 1:2793890/1‑36 (MQ=255)
gcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgt > 1:3815202/1‑36 (MQ=255)
gcTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgt > 1:2485867/1‑36 (MQ=255)
cTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtg > 1:5307840/1‑36 (MQ=255)
cTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtg > 1:4180999/1‑36 (MQ=255)
tGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtgt > 1:3505316/1‑36 (MQ=255)
tGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtgt > 1:7112081/1‑36 (MQ=255)
tGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtgt > 1:7188984/1‑36 (MQ=255)
tGAAAAAAGCAAAACCGACTCAGGCGAAAGGCgtgt > 1:2479067/1‑36 (MQ=255)
gAAAAAAGCAAAACCGACTCAGGCGAAAGGCGTGTa > 1:6224576/1‑36 (MQ=255)
aaaaaaaCAAAAACCGACTCAGGCGAAAGGCGTGTa < 1:2538847/35‑1 (MQ=37)
aaaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACa < 1:4583302/36‑1 (MQ=255)
aaaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACa > 1:6520946/1‑36 (MQ=255)
aaaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACa > 1:5653360/1‑36 (MQ=255)
aaaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACa < 1:4903338/36‑1 (MQ=255)
aaaaGCAAAACCGTCTCAGGCGAAAGGAGTGTACAt > 1:4285715/1‑36 (MQ=37)
aaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACAt > 1:4844943/1‑36 (MQ=255)
aaaaGCAAAACCGACTCAGGCGAAAGGCGTGTACAt < 1:2050972/36‑1 (MQ=255)
aaaaGCAAAACCGACTCAGGCGAAAGGCGTGCACAt > 1:6378878/1‑36 (MQ=255)
aaaaGAAAAACCGACTCAGGCGAAAGGCGTGTACAt < 1:976367/36‑1 (MQ=255)
aaaGCAAAACCGACTCAGGCGAAAGGCGTGTACATc > 1:4372587/1‑36 (MQ=255)
aaaGCAAAACCGACTCAGGCGAAAGGCGTGTACATc > 1:579390/1‑36 (MQ=255)
aaaGCAAAACCGACTCAGGCGAAAGGCGTGTACATc > 1:1544838/1‑36 (MQ=255)
aaGCAAAACCGACTCAGGCGAAAGGCGTGTACATCa > 1:978909/1‑36 (MQ=255)
aGCAAAACCGACTCAGGCGAAAGGCGTGTACATCaa > 1:6694875/1‑36 (MQ=255)
aGCAAAACCGACTCAGGCGAAAGGCGTGTACATCaa > 1:6447761/1‑36 (MQ=255)
aGCAAAACCGACTCAGGCGAAAGGCGTGTACATCaa > 1:6054150/1‑36 (MQ=255)
gCAAAACCGACTCAGGCGAAAGGCGTGTACATCAAg > 1:6153914/1‑36 (MQ=255)
cAAAACCGACTCAGGCGAAAGGCGTGTACATCAAGa > 1:5858241/1‑36 (MQ=255)
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AACCTGGAAGCTCTGCTGGTTGCGCTGAAAAAAGCAAAACCGACTCAGGCGAAAGGCGTGTACATCAAGA > REL606/4159051‑4159120
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 37 ≤
ATCG
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