Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 3,485,893 | 0 | G→T | 10.7% | 1.4 ‑10.9 0.0 | 77 | 787 | rtcB | hypothetical protein |
Rejected: E-value exceeds prediction threshold. | ||||||||||
Reads supporting (aligned to +/- strand): new base (11/0): ref base (21/45): total (32/45) | ||||||||||
Fisher's exact test strand distribution p-value = 1.93e-05 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
CATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTCCA > REL606/3485858‑3485928
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cATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTg < 1:125521/36‑1 (MQ=255)
aTCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGc < 1:2732447/36‑1 (MQ=255)
tCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCg < 1:4088704/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGt < 1:345626/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGt < 1:5409334/36‑1 (MQ=255)
cGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGt < 1:2055693/36‑1 (MQ=255)
gCCAGCGTTTGTGGCTGTCTTACCGTTTTTTTCGtt > 1:364834/1‑35 (MQ=18)
gCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTa < 1:3926898/36‑1 (MQ=255)
ccAGCGTTTGTGGCTGTCTGACCGTTTTCTTCTTaa > 1:7422704/1‑36 (MQ=21)
ccAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTaa < 1:5367966/36‑1 (MQ=255)
ccAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTaa < 1:6338420/36‑1 (MQ=255)
cAGCGTTTGTGGCTGTTGTTCCGTTTTCTTCTTAAt > 1:7431697/1‑36 (MQ=9)
cAGCGTTTGTGGCTGTCTTACCGTTTTTTTGGTAAt > 1:4345664/1‑36 (MQ=16)
cAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAAt < 1:1834668/36‑1 (MQ=255)
cAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAAt < 1:6203497/36‑1 (MQ=255)
cAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAAt < 1:4707185/36‑1 (MQ=255)
aGCGTTTGTGGCTGTTTGAGCGTTTTTTTTGTAAtt > 1:1114111/1‑35 (MQ=9)
aGCGTTTGTGGCTGTGTGACCGTTTTTTTGGTAAtt > 1:5503342/1‑35 (MQ=16)
aGCGTTTGTGGCTGTCTTACCGTTTTTTTCGTTAtt > 1:3060104/1‑35 (MQ=16)
aGCGTTTGTGGCTGTCTGGCCCGTTTTTTCGTAAtt > 1:2206093/1‑35 (MQ=12)
aGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATg < 1:816757/36‑1 (MQ=255)
aGCGTTTGTGGCTATCTTACCGTTTTTTTCGTAATg > 1:4368633/1‑36 (MQ=19)
gCGTTTGTGTCTGTCTGACCGTTTTCTGCGTAATGc < 1:5208306/36‑1 (MQ=255)
cGTTTGTGGCTGTCTTACCGTTTTTTTCGTAATTct > 1:533454/1‑36 (MQ=19)
cGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGct < 1:5823606/36‑1 (MQ=255)
cGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGct < 1:586546/36‑1 (MQ=255)
gTTTGTGGCTGTCTGGTCGGTTTTTGCGGCATGctc > 1:5832427/1‑36 (MQ=9)
gTTTGTGGCTGTCTGAACGTTTTCTTCGTTATTctc > 1:4142136/1‑36 (MQ=12)
tttGTGGCTGTCTGACCGTTTTCTGCGTAATGctct < 1:5262178/36‑1 (MQ=255)
ttGTGGCTGTCTGCCCGTTTTCTGCGTAATGCTCTg < 1:5228296/36‑1 (MQ=255)
ttGTGGCTGTCTGACCGGTTTCTGAGTGATGCTCTg > 1:4260587/1‑36 (MQ=25)
gtgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCa < 1:6972858/36‑1 (MQ=255)
tgGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCaa < 1:7270404/36‑1 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt < 1:3428248/36‑1 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt > 1:3408636/1‑36 (MQ=255)
ggCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAAt < 1:135492/36‑1 (MQ=255)
gCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATg < 1:1232522/36‑1 (MQ=255)
gCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATg < 1:6823307/36‑1 (MQ=255)
cTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGc > 1:1310862/1‑36 (MQ=255)
tGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGcc < 1:758055/36‑1 (MQ=255)
gTCTGACCGTTTTCTGCTTAATTCTCTGCAATGCCg > 1:810214/1‑36 (MQ=37)
gTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCg > 1:825528/1‑36 (MQ=255)
tCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGt > 1:666303/1‑36 (MQ=255)
tCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGt < 1:5888142/36‑1 (MQ=255)
tCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGt > 1:2886657/1‑36 (MQ=255)
tCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGt < 1:6843479/36‑1 (MQ=255)
tGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTa < 1:5054231/36‑1 (MQ=255)
tGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTa > 1:6023197/1‑36 (MQ=255)
tGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTa > 1:7194093/1‑36 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc < 1:1576010/36‑1 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc < 1:5610439/36‑1 (MQ=255)
gACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAc > 1:4782824/1‑36 (MQ=255)
aCCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAcc > 1:2276766/1‑36 (MQ=255)
aCCGTTTTCTGCGTAATGCTCTGCAATGCCGTTAcc < 1:4957665/36‑1 (MQ=255)
aCCGTTTACTGCGTAATGCTCTGCAATGCCGTTAcc < 1:4676442/36‑1 (MQ=255)
cGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCAc > 1:2811144/1‑36 (MQ=255)
cGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCAc < 1:711010/36‑1 (MQ=255)
cGTTTTCTGAGTAATGCTCTGCAATGCCGTTACCAc < 1:4147058/36‑1 (MQ=255)
gTTTTCTGCGTAATGCTCTGCAATGCCGTTCCCACg < 1:4510331/36‑1 (MQ=255)
gTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACg < 1:7046471/36‑1 (MQ=255)
ttttCTGCGTAATGCTCTGCAATGCCGTTACCACGt < 1:3802613/36‑1 (MQ=255)
ttttCTGCGTAATGCTCTGCAATGCCGTTACCACGt > 1:2246332/1‑36 (MQ=255)
ttttCTGCGTAATGCTCTGCAATGCCGTTACCACGt < 1:974373/36‑1 (MQ=255)
tttCTGCGTAATGCTCTGCAATGCCGTTACCACGtt < 1:4931649/36‑1 (MQ=255)
tttCTGCGTAATGCTCTGCAATGCCGTTACCACGtt > 1:1166545/1‑36 (MQ=255)
ttCTGCGTAATGCTCTGCAATGCCGTTACCACGttt < 1:6524067/36‑1 (MQ=255)
ttCTGCGTAATGCTCTGCAATGCCGTTACCACGttt < 1:3486634/36‑1 (MQ=255)
ttCTGCGTAATGCTCTGCAATGCCGTTACCACGttt < 1:2344557/36‑1 (MQ=255)
tCTGCGTAATGCTCTGCAATGCCGTTACCACGtttt > 1:5061787/1‑36 (MQ=255)
tCTGCGTAATGCTCTGCAATGCCGTTACCACGtttt < 1:7291614/36‑1 (MQ=255)
cTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTc < 1:6716202/36‑1 (MQ=255)
cTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTc > 1:5713514/1‑36 (MQ=255)
cTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTc < 1:2223498/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc > 1:6499069/1‑36 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc < 1:5990803/36‑1 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc > 1:3313662/1‑36 (MQ=255)
tGCGTAATGCTCTGCAATGCCGTTACCACGTTTTcc > 1:1010425/1‑36 (MQ=255)
tGCGTAATGCTCTGAAATGCCGTTACCACGTTTTcc > 1:3104702/1‑36 (MQ=255)
gCGTAATGCTCTGCAATGCCGTTACCACGTTTTCca < 1:2746242/36‑1 (MQ=255)
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CATCGCCAGCGTTTGTGGCTGTCTGACCGTTTTCTGCGTAATGCTCTGCAATGCCGTTACCACGTTTTCCA > REL606/3485858‑3485928
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 37 ≤
ATCG
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