New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 70144732 (0.860)8 (0.220) 4/58 NT 23.5% coding (1109/2199 nt) speF ornithine decarboxylase isozyme, inducible
?REL606 3424883 = 20 (0.450)intergenic (+101/‑25) nirD/nirC nitrite reductase small subunit/nitrite transporter

CAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTA  >  REL606/3424848‑3424914
                                   |                               
ataacgctgttgccctttgatgtggctgtttttttt                                 >  1:1529536‑M2/36‑36 (MQ=255)
ataacgctgttgccctttgatgtggctgtttttttt                                 >  1:5566605‑M2/36‑36 (MQ=255)
ataacgctgttgccctttgatgtggctgtgtttttt                                 >  1:731478‑M2/36‑36 (MQ=255)
 aGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                                >  1:452442/1‑36 (MQ=255)
 aGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                                >  1:5447485/1‑36 (MQ=255)
  ggACATTTTTTAAACTTTTTGTTTTATTTTTTGttt                               <  1:5442348/36‑1 (MQ=255)
  ggACATTTTTTAAACTTTTTGTTTTATTTTTTGttt                               <  1:2361453/36‑1 (MQ=255)
  ggACATTTTTTAAACTTTTTGTTTTATTTTTTGttt                               <  1:3695995/36‑1 (MQ=255)
   gACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                              <  1:3939987/36‑1 (MQ=255)
   gACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                              <  1:4298737/36‑1 (MQ=255)
   acgctgttgccctttgatgtggctgttttttttttt                              >  1:1328821‑M2/33‑36 (MQ=255)
   acgctgttgccctttgatgtggctgtcttttttttt                              >  1:642320‑M2/33‑36 (MQ=255)
     cATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                            <  1:5012376/36‑1 (MQ=255)
      aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                           <  1:223315/36‑1 (MQ=255)
       ttttttAAACTTTTTGTTTTATTTTTTGTTTTTAtt                          >  1:5332733/1‑36 (MQ=255)
        tttttAAACTTTTTGTTTTATTTTTTGTTTTTAttt                         <  1:5317708/36‑1 (MQ=255)
         ttttAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                        >  1:3181694/1‑36 (MQ=255)
         ttgccctttgatgtggctgttttttttttttatttt                        >  1:4850735‑M2/27‑36 (MQ=255)
          tttAAACTTTTTGTTTTATTTTTTGTTTTTAttttt                       >  1:4543351/1‑36 (MQ=255)
          tgccctttgatgtggctgttttttttttttattttt                       >  1:5303689‑M2/26‑36 (MQ=255)
              ctttgatgtggctgtctttttTTTTTATTTTTtaag                   >  1:4334951‑M2/22‑35 (MQ=255)
              aaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa                   <  1:1277648/36‑1 (MQ=255)
                cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAACgg                 <  1:2094891/36‑1 (MQ=255)
                  ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt               >  1:5924910/1‑36 (MQ=255)
                  ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt               >  1:1047596/1‑36 (MQ=255)
                   tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGATa              <  1:4132340/36‑1 (MQ=255)
                      gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATc           <  1:544877/36‑1 (MQ=255)
                       ttttATTTTTTGTTTTTATTTTTTAAAGGATAATCa          <  1:386467/36‑1 (MQ=255)
                         ttATTTTTTGTTTTTATTTTTTAAATGATAATCaaa        >  1:2845590/1‑36 (MQ=255)
                         ttATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa        <  1:4558670/36‑1 (MQ=255)
                            ttttttGTTTTTATTTTTTAAAGGATAATCAAAttt     >  1:3520381/1‑34 (MQ=255)
                             tttttGTTTTTATTTTTTAAATGATAATCAAATGtt    >  1:2609722/1‑36 (MQ=255)
                             tttttGTTTTTATTTTTTAAAGGATAATCAAATGtt    <  1:5534451/36‑1 (MQ=255)
                               tttGTTTTTATTTTTTAAAGTATAATCAAATGTTTa  >  1:187548/1‑36 (MQ=255)
                               tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTa  <  1:5511000/36‑1 (MQ=255)
                               ttnGTTTTTATTTTTTAAANGANAATCAAATGTTTa  <  1:2157896/36‑1 (MQ=37)
                                   |                               
CAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTA  >  REL606/3424848‑3424914

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 37 ≤  ATCG