Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,201,911 | C→T | 81.5% | A217T (GCG→ACG) | iclR ← | DNA‑binding transcriptional repressor |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | REL606 | 4,201,911 | 0 | C→T | 81.5% | 35.1 ‑0.9 0.0 | 81 | 649 | iclR | DNA‑binding transcriptional repressor |
Reads supporting (aligned to +/- strand): new base (35/31): ref base (6/9): total (41/40) | ||||||||||
Fisher's exact test strand distribution p-value = 4.04e-01 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 |
AAATACACGCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCTCATCGTCAAATGAATAACCCCGT > REL606/4201878‑4201942
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aaaTACACGCTGCAAGGCAACGTAGCCCCAGCGTAt > 1:5104468/1‑36 (MQ=255)
aaaTACACGCTGCAAGGCAACGTAGCCCCAGCGTAt > 1:1753948/1‑36 (MQ=255)
aaaTACACGCTGCAAGGCAACGTAGCCCCAGCGCAt < 1:1330707/36‑1 (MQ=255)
aaTACACGCTGCAAGGCAACGTAGCCCCAGCGTATg < 1:3267921/36‑1 (MQ=255)
aTACACGCTGCAAGGCCACGTAGCCCCAGCGTATGt < 1:4752902/36‑1 (MQ=37)
tACACGCTGCAAGGCAACGTAGCCCCAGCGTATGtt > 1:6102819/1‑36 (MQ=255)
tACACGCTGCAAGGCAACGTAGCCCCAGCGTATGtt < 1:1147803/36‑1 (MQ=255)
tACACGCTGCAAGGCAACGTAGCCCCAGCGTATGtt < 1:5694930/36‑1 (MQ=255)
tACACGCTGCAAGGCAACGTAGCCCCAGCGCATGtt > 1:1118712/1‑36 (MQ=255)
acacGCTGCAAGGCAACGTAGCCCCAGCGTATGTTc > 1:6551366/1‑36 (MQ=255)
acacGCTGCAAGGCAACGTAGCCCCAGCGTATGTTc < 1:3244109/36‑1 (MQ=255)
acGCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCt > 1:3376813/1‑36 (MQ=255)
acGCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCt > 1:8086659/1‑36 (MQ=255)
acGCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCt > 1:4945401/1‑36 (MQ=255)
acGCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCt < 1:835024/36‑1 (MQ=255)
cGCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTc < 1:4997746/36‑1 (MQ=255)
cGCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTc > 1:6365403/1‑36 (MQ=255)
cGCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCTc < 1:4705743/36‑1 (MQ=255)
gCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTCa < 1:2409863/36‑1 (MQ=255)
gCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTCa > 1:2545078/1‑36 (MQ=255)
gCTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTCa > 1:3168752/1‑36 (MQ=255)
gCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCTCa > 1:3075251/1‑36 (MQ=255)
gCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCTCa > 1:6581017/1‑36 (MQ=255)
cTGCAAGGCAACGTAGCCCCAGCGTATGTTCCTCAt > 1:3526010/1‑36 (MQ=255)
cTGCAAGGCAACGCAGCCCCAGCGTATGTTCCTCAt > 1:2167058/1‑36 (MQ=37)
tGCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATc < 1:8021233/36‑1 (MQ=255)
gCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATCg > 1:518742/1‑36 (MQ=255)
gCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATCg > 1:4218514/1‑36 (MQ=255)
gCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATCg > 1:8357080/1‑36 (MQ=255)
gCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATCg < 1:2500543/36‑1 (MQ=255)
gCAAGGCAACGTAGCCCCAGCGTATGTTCCTCATCg < 1:142956/36‑1 (MQ=255)
cgaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGt < 1:6992210/34‑1 (MQ=38)
cAAGGCAACGTAGCCCCAGCGCATGTTCCTCATCGt < 1:754767/36‑1 (MQ=255)
cAAGGCAACGTAGCCCCAGCGCATGTTCCTCATCGt > 1:6272934/1‑36 (MQ=255)
aaGGCAACGTAGCCCCAGCGTATGTTTCTCATCGta > 1:105096/1‑35 (MQ=37)
aaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTc > 1:3458759/1‑36 (MQ=255)
aaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTc < 1:7422441/36‑1 (MQ=255)
aaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTc > 1:1148709/1‑36 (MQ=255)
aaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTc < 1:7839541/36‑1 (MQ=255)
aaGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTc < 1:8007405/36‑1 (MQ=255)
aaGGCAACGGAGACCCAGCGTATGTTCCTCATCGTc > 1:6549895/1‑36 (MQ=37)
aGGCAACGTAGCCCCAGCGTATGTTCCTCATCGTCa < 1:542060/36‑1 (MQ=255)
aGGCAACGTAGCCCCAGCGCATGTTCCTCATCGTCa < 1:1281563/36‑1 (MQ=255)
ggCAACGTAGCCCCAGCGTATGTTCCTCATCGTCaa > 1:5479574/1‑36 (MQ=255)
ctcAACGTAGCCCCAGCGCATGTTCCTCATCGTCaa < 1:241225/34‑1 (MQ=255)
gCAACGTAGCCCCAGCGTATGTTCCTCATCGTCaaa < 1:7047585/36‑1 (MQ=255)
gCAACGTAGCCCCAGCGTATGTTCCTCATCGTCaaa > 1:4429415/1‑36 (MQ=255)
gCAACGTAGCCCCAGCGTATGTTCCTCATCGTCaaa > 1:7362273/1‑36 (MQ=255)
gCAACGTAGCCCCAGCGCATGTTCCTCATCGTCaaa < 1:5307385/36‑1 (MQ=255)
cAACGTAGCCCCAGCGTATGTTCCTCATCGTCAAAt < 1:6564000/36‑1 (MQ=255)
cAACGTAGCCCCAGCGTATGTTCCTCATCGTCAAAt < 1:7822635/36‑1 (MQ=255)
cAACGTAGCCCCAGCGTATGTTCCTCATCGTCAAAt < 1:3631501/36‑1 (MQ=255)
aaCGTAGCCCCAGCGTATGTTCCTCATCGTCAAATg > 1:4489198/1‑36 (MQ=255)
aaCCTAGCCCCAGCGTATGTTCCTCATCGTCAAATg < 1:654721/36‑1 (MQ=37)
aCGTAGCCCCAGCGTATGTTCCTCATCGTCAAATGa < 1:1545347/36‑1 (MQ=255)
aCGTAGCCCCAGCGTATGTTCCTCATCGTCAAATGa < 1:469799/36‑1 (MQ=255)
aCGTAGCCCCAGCGTATGTTCCTCATCGTAAAATGa > 1:8168280/1‑36 (MQ=37)
cGTAGCCCCAGCGTATGTTCCTCATCGTCAAATGaa > 1:1043286/1‑36 (MQ=255)
cGTAGCCCCAGCGCATGTTCCTCATCGTCAAATGaa > 1:899001/1‑36 (MQ=255)
cGTAGCCCCAGCGCATGTTCCTCATCGTCAAATGaa > 1:5647539/1‑36 (MQ=255)
gTAGCCCCAGCGTATGTTCCTCATCGTCAAATGAAt > 1:8355718/1‑36 (MQ=255)
gTAGCCCCAGCGTATGTTCCTCATCGTCAAATGAAt < 1:6462229/36‑1 (MQ=255)
tAGCCCCAGCGTATGTTCCTCATCGTCAAATGAATa > 1:2510742/1‑36 (MQ=255)
tAGCCCCAGCGTATGTTCCTCATCGTCAAATGAATa < 1:5322704/36‑1 (MQ=255)
aGCCCCAGCGTATGTTCCTCATCGTCAAATGAATaa < 1:7694224/36‑1 (MQ=255)
aGCCCCAGCGTATGTTCCTCATCGTCAAATGAATaa < 1:1283086/36‑1 (MQ=255)
gCCCCAGCGTATGTTCCTCATCGTCAAATGAATAAc < 1:436208/36‑1 (MQ=255)
gCCCCAGCGTATGTTCCTCATCGTCAAATGAATAAc < 1:8420838/36‑1 (MQ=255)
gCCCCAGCGTATGTTCCTCATCGTCAAATGAATAAc < 1:5717970/36‑1 (MQ=255)
gCCCCAGCGTATGTTCCTCATCGTCAAATGAATAAc > 1:4659558/1‑36 (MQ=255)
ccccAGCGTATGTTCCTCATCGTCAAATGAATAAcc > 1:5842272/1‑36 (MQ=255)
cccAGCGTATGTTCCTCATCGTCAAATGAATAAccc > 1:404500/1‑36 (MQ=255)
cccAGCGTATGTTCCTCATCGTCAAATGAATAAccc > 1:7475813/1‑36 (MQ=255)
cccAGCGTATGTTCCTCATCGTCAAATGAATAAccc < 1:1598129/36‑1 (MQ=255)
ccAGCGTATGTTCCTCATCGTCAAATGAATAAcccc > 1:3190825/1‑36 (MQ=255)
ccAGCGTATGTTCCTCATCGTCAAATGAATAAcccc > 1:2970908/1‑36 (MQ=255)
cAGCGTATGTTCCTCATCGTCAAATGAATAACCCCg > 1:304609/1‑36 (MQ=255)
cAGCGTATGTTCCTCATCGTCAAATGAATAACCCCg < 1:3353032/36‑1 (MQ=255)
cAGCGCATGTTCCTCATCGTCAAATGAATAACCCCg < 1:7972921/36‑1 (MQ=255)
aGCGTATGTTCCTCATCGTCAAATGAATAACCCCGt > 1:4441772/1‑36 (MQ=255)
aGCGCATGTTCCTCATCGTCAAATGAATAACCCCGt < 1:3915052/36‑1 (MQ=255)
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AAATACACGCTGCAAGGCAACGTAGCCCCAGCGCATGTTCCTCATCGTCAAATGAATAACCCCGT > REL606/4201878‑4201942
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 32 ≤
ATCG
< 37 ≤
ATCG
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