Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 3,894,997 Δ6,934 bp 100% IS150‑mediated rbsD[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3894997 3901930 6934 52 [2] [1] 42 rbsD–[yieO] rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3894996NA (NA)36 (0.680) 26/64 NT 97.3% noncoding (1443/1443 nt) IS150 repeat region
?REL606 3901931 = 1 (0.020)coding (489/1428 nt) yieO predicted multidrug or homocysteine efflux system

CCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG  >  REL606/3901896‑3901965
                                   |                                  
cgtgtttaactgtccaactttttggggtcagtacag                                    <  1:5154731‑M2/1‑1 (MQ=255)
cgtgtttaactgtccaactttttggggtcagtacag                                    <  1:2033233‑M2/1‑1 (MQ=255)
 gtgtttaactgtccaactttttggggtcagtacagg                                   <  1:4511524‑M2/2‑1 (MQ=255)
  tgtttaactgtccaactttttggggtcagtacaGGt                                  <  1:2502327‑M2/3‑1 (MQ=255)
  tgtttaactgtccaactttttggggtcagtacaGGt                                  >  1:5941901‑M2/34‑36 (MQ=255)
   gtttaactgtccaactttttggggtcagtacaGGtt                                 <  1:415321‑M2/4‑1 (MQ=255)
    tttaactgtccaactttttggggtcagtacaTGTTg                                >  1:4306690‑M2/32‑36 (MQ=255)
    tttaactgtccaactttttggggtcagtacaGGTTg                                <  1:3296812‑M2/5‑1 (MQ=255)
    tttaactgtccaactttttggggtcagtacaGGTTg                                >  1:7273294‑M2/32‑36 (MQ=255)
     ttaactgtccaactttttggggtcagtacaGGTTGc                               >  1:6106442‑M2/31‑36 (MQ=255)
      taactgtccaactttttggggtcagtacaGGTTGcc                              >  1:1668192‑M2/30‑36 (MQ=255)
      taactgtccaactttttggggtcagtacaGGTTGcc                              >  1:55872‑M2/30‑36 (MQ=255)
      taactgtccaactttttggggtcagtacaGGTTGcc                              <  1:3356077‑M2/7‑1 (MQ=255)
      taactgtccaactttttggggtcagtacaGGTTGcc                              <  1:636296‑M2/7‑1 (MQ=255)
         ctgtccaactttttggggtcagtacaGGTTGCCCAg                           <  1:1606942‑M2/10‑1 (MQ=255)
          tgtccaactttttggggtcagtacaGGTTGCCCAgg                          >  1:1605999‑M2/26‑36 (MQ=255)
          tgtccaactttttggggtcagtacaGGTTGCCCAgg                          >  1:2628626‑M2/26‑36 (MQ=255)
          tgtccaactttttggggtcagtacaGGTTGCCCAgg                          <  1:4993825‑M2/11‑1 (MQ=255)
          tgtccaactttttggggtcagtacaGGTTGCCCAgg                          <  1:1390497‑M2/11‑1 (MQ=255)
           gtccaactttttggggtcagtacaGGTTGCCCAGGt                         >  1:5756695‑M2/25‑36 (MQ=255)
           gtccaactttttggggtcagtacaGGTTGCCCAGGt                         >  1:4396828‑M2/25‑36 (MQ=255)
            tccaactttttggggtcagtacaGGTTGCCCAGGTg                        <  1:6739700‑M2/13‑1 (MQ=255)
              caactttttggggtcagtacaGGTTGCCCAGGTGAc                      >  1:2479516‑M2/22‑36 (MQ=255)
               aactttttggggtcagtacaGGTTGCCCAGGTGAcc                     <  1:1571106‑M2/16‑1 (MQ=255)
                 ctttttggggtcagtacaGGTTGCCCAGGTGACCAg                   <  1:1894995‑M2/18‑1 (MQ=255)
                      tggggtcagtacaGGTTGCCCAGGTGACCAGCAcgc              >  1:1674917‑M2/14‑36 (MQ=255)
                       ggggtcagtacaGGTTGCCCAGGTGACCAGCAcgcc             <  1:1074735‑M2/24‑1 (MQ=255)
                        gggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg            <  1:5467170‑M2/25‑1 (MQ=255)
                        gggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg            >  1:1219124‑M2/12‑36 (MQ=255)
                        gggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg            >  1:4436011‑M2/12‑36 (MQ=255)
                          gtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc          <  1:6077468‑M2/27‑1 (MQ=255)
                          gtcagtacaGGTTGCCCAGGTGACCAGCACgccgcc          <  1:7169086‑M2/27‑1 (MQ=255)
                          ccAGTGCCAGGTTGCCCAGGTGACCAGCACgccgcc          >  1:2554208/1‑36 (MQ=255)
                           tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa         >  1:3528745‑M2/9‑36 (MQ=255)
                            cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa        >  1:4592622‑M2/8‑36 (MQ=255)
                            cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa        >  1:4504166‑M2/8‑36 (MQ=255)
                             agtacaTGTTGCCCAGGTGACCAGCACGCCGCCAAg       <  1:6438483‑M2/30‑1 (MQ=255)
                             agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg       >  1:5726451‑M2/7‑36 (MQ=255)
                             agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg       <  1:5785792‑M2/30‑1 (MQ=255)
                                 caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACg   >  1:606162‑M2/3‑36 (MQ=255)
                                  aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACgg  >  1:3616706‑M2/2‑36 (MQ=255)
                                  aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACgg  >  1:4132375‑M2/2‑36 (MQ=255)
                                   |                                  
CCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG  >  REL606/3901896‑3901965

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 37 ≤  ATCG