New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3616794 =151 (1.070)140 (0.990) 55/68 0.3 45.2% coding (1872/3474 nt) bcsC cellulose synthase subunit
?REL606 = 3616922 189 (1.340)coding (1744/3474 nt) bcsC cellulose synthase subunit

Only 100 of 339 total aligned reads displayed.

TCCGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCAGT  >  REL606/3616888‑3616956
                                  |                                  
tccgcttcTGCCTCTTTGCCGCTTTCTCGCAGGCg                                    >  1:10711795/1‑35 (MQ=255)
tccgcttcTGCCTCTTTGCCGCTTTCTCGCAGGCg                                    >  1:5222314/1‑35 (MQ=255)
 ccgcttcTGCCTCTTTGCCGCTTTCTCGCAGGCgn                                   <  1:16527605/35‑1 (MQ=255)
 ccGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGa                                   >  1:10214438‑M2/1‑34 (MQ=255)
 ccGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGa                                   >  1:13272914‑M2/1‑34 (MQ=255)
  cgcttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGt                                  <  1:2804301/35‑1 (MQ=255)
  cgcttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGt                                  <  1:15553202/35‑1 (MQ=255)
  cGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGag                                  <  1:2557716‑M2/35‑3 (MQ=255)
  cGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGag                                  <  1:1360931‑M2/35‑3 (MQ=255)
    cttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTa                                <  1:1315421/35‑1 (MQ=255)
    cttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTa                                <  1:1238836/35‑1 (MQ=255)
    cttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTa                                >  1:18250704/1‑35 (MQ=255)
    cTTCTGCCTCTTTGCCGCTTTCTCGCAGGCAagcg                                >  1:8104157‑M2/1‑31 (MQ=255)
     ttcTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAg                               <  1:13504882/35‑1 (MQ=255)
     ttCTGCCTCTTTGCCGCTTTCTCGCAGGCGagcgc                               <  1:2489104‑M2/35‑6 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGagcgcgg                             >  1:13746466‑M2/1‑28 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGagcgcgg                             >  1:7165556‑M2/1‑28 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGagcgcgg                             >  1:15659755‑M2/1‑28 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCg                             <  1:10089576/35‑1 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCg                             >  1:7783036/1‑35 (MQ=255)
       cTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCg                             >  1:10834085/1‑35 (MQ=255)
        tGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCgg                            <  1:11054434/35‑1 (MQ=255)
        tGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCgg                            <  1:7121465/35‑1 (MQ=255)
        tGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCgg                            <  1:16867137/35‑1 (MQ=255)
         gCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCggg                           >  1:14012270/1‑34 (MQ=255)
          ccTCTTTGCCGCTTTCTCGCAGGCGGTTAGCGGtt                          >  1:354881/1‑35 (MQ=255)
          ccTCTTTGCCGCTTTCTCGCAGGAGagcgcgggcg                          >  1:16709739‑M2/1‑25 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGagcgcgggcgg                         >  1:12561921‑M2/1‑24 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGagcgcgggcgg                         >  1:16131422‑M2/1‑24 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGagcgcgggcgg                         >  1:14489243‑M2/1‑24 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGagcgcgggcgg                         <  1:9693547‑M2/35‑12 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGGTTAGCGGttt                         <  1:4910506/35‑1 (MQ=255)
           ctctTTGCCGCTTTCTCGCAGGCGGTTAGCGGttt                         >  1:13954498/1‑35 (MQ=255)
            tctTTGCCGTTTTCTCGCAGGCGGTTAGCGGTTTc                        >  1:17659502/1‑35 (MQ=255)
            tctTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTc                        >  1:11972243/1‑35 (MQ=255)
            tctTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTc                        <  1:9486359/35‑1 (MQ=255)
            tctTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTc                        <  1:12507164/35‑1 (MQ=255)
             ctTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTcc                       <  1:8277650/35‑1 (MQ=255)
             ctTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTcc                       >  1:1577366/1‑35 (MQ=255)
              tttGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCa                      <  1:3168433/35‑1 (MQ=255)
               ttGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAg                     <  1:14801865/35‑1 (MQ=255)
               ttGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAg                     <  1:18011552/35‑1 (MQ=255)
                tGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGc                    >  1:12787501/1‑35 (MQ=255)
                tGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGc                    >  1:6044951/1‑35 (MQ=255)
                tGCCGCTTTCTCGCAGGCAGTTAGCGGTTTCCAGc                    <  1:8310060/35‑1 (MQ=255)
                  ccGCTTTCTCGCAGGCGagcgcgggcggcggtgta                  <  1:4452409‑M2/35‑19 (MQ=255)
                  ccGCTTTCTCGCAGGCGagcgcgggcggcggtgta                  <  1:18504762‑M2/35‑19 (MQ=255)
                  ccGCTTTCTCGCAGGCGagcgcgggcggcggtgta                  >  1:12243275‑M2/1‑17 (MQ=255)
                  ccGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCAc                  <  1:6966775/35‑1 (MQ=255)
                  ccGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCAc                  <  1:8143797/35‑1 (MQ=255)
                   cGCTTTCTCGCAGGCGagcgcgggccgcggtgtaa                 <  1:14551778‑M2/35‑20 (MQ=255)
                   cGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCAcc                 <  1:9276131/35‑1 (MQ=255)
                   cGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCAcc                 <  1:896321/35‑1 (MQ=255)
                   cGCTTTCGCGCAGGCGagcgcgggcggcggtgtaa                 >  1:16941772‑M2/1‑16 (MQ=255)
                    gCTTTCTCGCAGGCGagcgcgggcggcggtgtaat                >  1:5551677‑M2/1‑15 (MQ=255)
                      tttCTCGCAGGCGagcgcgggcggcggtgtaatca              <  1:4677650‑M2/35‑23 (MQ=255)
                      tttCTCGCAGGCGagcgcgggcggcggtgtaatca              >  1:3291868‑M2/1‑13 (MQ=255)
                      tttCTCGCAGGCGagcgcgggcggcggtgtaatca              <  1:11516886‑M2/35‑23 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              <  1:4295317/35‑1 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              <  1:37939/35‑1 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              >  1:16004536/1‑35 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              >  1:7929242/1‑35 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              >  1:2063117/1‑35 (MQ=255)
                      tttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGa              >  1:13023814/1‑35 (MQ=255)
                       ttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGAt             <  1:403797/35‑1 (MQ=255)
                       ttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGAt             <  1:3995870/35‑1 (MQ=255)
                       ttCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGAt             <  1:11261650/35‑1 (MQ=255)
                        tctcGCAGGCGagcgcgggcggcggtgtaatcacg            <  1:751079‑M2/35‑25 (MQ=255)
                         ctcGCAGGCGGTTAGCGGTTTCCAGCACCTGGTCg           <  1:8573678/35‑1 (MQ=255)
                         ctcGCAGGCGGTTAGCGGTTTCCAGCACCTGATCg           >  1:5390611/1‑35 (MQ=255)
                         ctcGCAGGCGGTTAGCGGTTTCCAGCACCTGATCg           >  1:6375921/1‑35 (MQ=255)
                         ctcGCAGGCGGTTAGCGGTTTCCAGCACCTGATCg           <  1:9741751/35‑1 (MQ=255)
                          tcGCAGGCGGTTAGCGGTTTCCAGCACCTGATCGc          >  1:6618603/1‑35 (MQ=255)
                           cGCAGGCGagcgcgggcggcggtgtaatcacgtcg         <  1:6267775‑M2/35‑28 (MQ=255)
                           cGCAGGCGagcgcgggcggcggcgtaatcacgtcg         <  1:16230853‑M2/35‑28 (MQ=255)
                           cGCAGGCGGTTAGCGGTTTCCAGCACCTGATCGCt         <  1:11774144/35‑1 (MQ=255)
                           cGCAGGCGGTTAGCGGTTTCCAGCACCTGATCGCt         <  1:9144915/35‑1 (MQ=255)
                            gCAGGCGagcgcgggcggcggtgtaatcacgtcgt        >  1:14361900‑M2/1‑7 (MQ=255)
                            gCAGGCGagcgcgggcggcggtgtaatcacgtcgt        >  1:2225059‑M2/1‑7 (MQ=255)
                            gCAGGCGGTTAGCGGTTTCCAGCACCTGATCGCtt        <  1:8025342/35‑1 (MQ=255)
                             cAGGCGagcgcgggcggcggtgtaatcacgtcgtt       >  1:5873852‑M2/1‑6 (MQ=255)
                             cAGGCGagcgcgggcggcggtgtaatcacgtcgtt       <  1:5056437‑M2/35‑30 (MQ=255)
                             cAGGCGGTTAGCGGTTTCCAGCACCTGATCGCttt       <  1:6278298/35‑1 (MQ=255)
                              aGGCGagcgcgggcggcggtgtaatcacgtcgttg      >  1:17495607‑M2/1‑5 (MQ=255)
                               ggCGagcgcgggcggcggtgtaatcacgtcgttgt     >  1:3691649‑M2/1‑4 (MQ=255)
                               ggCGGTTAGCGGTTTCCAGCACCTGATCGCTTTGc     <  1:17050842/35‑1 (MQ=255)
                                gCGagcgcgggcggcggtgtaatcacgtcgttgtt    <  1:15131365‑M2/35‑33 (MQ=255)
                                gCGagcgcgggcggcggtgtaatcacgtcgttgtt    <  1:7661278‑M2/35‑33 (MQ=255)
                                gCGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCa    <  1:8766313/35‑1 (MQ=255)
                                gCGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCa    >  1:7384502/1‑35 (MQ=255)
                                 cGagcgcgggctgcggtgtaatcacgtcgttgttg   <  1:10320663‑M2/35‑34 (MQ=255)
                                 cGagcgcgggcggcggtgtaatcacgtcgttgttg   >  1:17387194‑M2/1‑2 (MQ=255)
                                 cGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCAg   <  1:15009303/35‑1 (MQ=255)
                                 cGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCAg   <  1:3662013/35‑1 (MQ=255)
                                 cGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCAg   >  1:18445318/1‑35 (MQ=255)
                                 cGGTTAGAGGTTTCCAGCACCTGATCGCTTTGCAg   <  1:12725064/35‑1 (MQ=255)
                                  ggTTAGCGGTTTCCAGCACCTGATCGCTTTGCAGt  <  1:12051330/35‑1 (MQ=255)
                                  ggTTAGCGGTTTCCAGCACCTGATCGCTTTGCAGt  <  1:15239669/35‑1 (MQ=255)
                                  gagcgcgggcggcggtgtaatcacgtcgttgttgc  >  1:11437406‑M2/1‑1 (MQ=255)
                                  gagcgcgggcggcggtgtaatcacgtcgttgttgc  <  1:18695132‑M2/35‑35 (MQ=255)
                                  |                                  
TCCGCTTCTGCCTCTTTGCCGCTTTCTCGCAGGCGGTTAGCGGTTTCCAGCACCTGATCGCTTTGCAGT  >  REL606/3616888‑3616956

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG