New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3616794 =151 (1.070)140 (0.990) 55/68 0.3 45.2% coding (1872/3474 nt) bcsC cellulose synthase subunit
?REL606 = 3616922 189 (1.340)coding (1744/3474 nt) bcsC cellulose synthase subunit

Only 100 of 140 total aligned reads displayed.

GCAACAACGACGTGATTACACCGCCGCCCGCGCT..................................  <  REL606/3616827‑3616794
..................................CGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  <  REL606/3616922‑3616889
                                                                    
GCAACAACGACGTGATTACACCGCCGCCCGCGCTC                                   <  1:18695132/35‑1 (MQ=1)
GCAACAACGACGTGATTACACCGCCGCCCGCGCTC                                   >  1:11437406/1‑35 (MQ=1)
GCAACAACGACGTGATTACACCGCCGCCCGCGCTC                                   >  1:11472421/1‑35 (MQ=1)
GCAACAACGACGTGATTACACCGCCGCCCGCGCTC                                   >  1:16541343/1‑35 (MQ=1)
 CAACAACGACGTGATTACACCGCCGCCCGCGCTCG                                  <  1:8928745/35‑1 (MQ=1)
 CAACAACGACGTGATTACACCGCCGCCCGCGCTCG                                  >  1:17387194/1‑35 (MQ=1)
 CAACAACGACGTGATTACACCGCCGCCCGCGCTCG                                  <  1:12011719/35‑1 (MQ=1)
  AACAACGACGTGCTTACACCGCCGCCCGCGCTCGC                                 >  1:1146427/1‑35 (MQ=0)
  AACAACGACGTGATTACACCGCCGCCCGCGCTCGC                                 >  1:16875839/1‑35 (MQ=1)
  AACAACGACGTGATTACACCGCCGCCCGCGCTCGC                                 <  1:7661278/35‑1 (MQ=1)
  AACAACGACGTGATTACACCGCCGCCCGCGCTCGC                                 <  1:15131365/35‑1 (MQ=1)
  AACAACGACGTGATTACACCCCCGCCCGCGCTCGC                                 >  1:14482570/1‑35 (MQ=0)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                <  1:17448904/35‑1 (MQ=1)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                >  1:82668/1‑35 (MQ=1)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                >  1:814537/1‑35 (MQ=1)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                <  1:7820071/35‑1 (MQ=1)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                >  1:3691649/1‑35 (MQ=1)
   ACAACGACGTGATTACACCGCCGCCCGCGCTCGCC                                >  1:718743/1‑35 (MQ=1)
    CAACGACGTGATTACACCGCCGCCCGCGCTCGCCT                               >  1:17495607/1‑35 (MQ=1)
    CAACGACGTGATTACACCGCCGCCCGCGCTCGCCT                               >  1:13074975/1‑35 (MQ=1)
    CAACGACGTGATTACACCGCCGCCCGCGCTCGCCT                               >  1:1450508/1‑35 (MQ=1)
     AACGACGTGATTACACCGCCGCCCGCGCTCGCCTG                              <  1:5056437/35‑1 (MQ=1)
     AACGACGTGATTACACCGCCGCCCGCGCTCGCCTG                              >  1:5873852/1‑35 (MQ=1)
     AACGACGTGATTACACCGCCGCCCGCGCTCGCCTG                              >  1:10259259/1‑35 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             >  1:14361900/1‑35 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             >  1:3434505/1‑35 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             <  1:14489785/35‑1 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             <  1:13268532/35‑1 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             >  1:5223258/1‑35 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             >  1:2225059/1‑35 (MQ=1)
      ACGACGTGATTACACCGCCGCCCGCGCTCGCCTGC                             <  1:15984321/35‑1 (MQ=1)
       CGACGTGATTACGCCGCCGCCCGCGCTCGCCTGCG                            <  1:16230853/35‑1 (MQ=0)
       CGACGTGATTACACCGCCGCCCGCGCTCGCCTGCG                            <  1:6267775/35‑1 (MQ=1)
       CGACGTGATTACACCGCCGCCCGCGCTCGCCTGCG                            >  1:568309/1‑35 (MQ=1)
       CGACGTGATTACACCGCCGCCCGCGCTCGCCTGCG                            >  1:9250995/1‑35 (MQ=1)
       CGACGTGATTACACCGCCGCCCGCGCTCGCCTGCG                            <  1:4954449/35‑1 (MQ=1)
        GACGTGATTACACCGCCGCCCGCGCTCGCCTGCGA                           <  1:10611564/35‑1 (MQ=1)
        GACGTGATTACACCGCCGCCCGCGCTCGCCTGCGA                           >  1:18781907/1‑35 (MQ=1)
        GACGTGATTACACCGCCGCCCGCGCTCGCCTGCGA                           >  1:8688160/1‑35 (MQ=1)
         ACGTGATTACACCGCCGCCCGCGCTCGCCTGCGAG                          <  1:6905664/35‑1 (MQ=1)
          CGTGATTACACCGCCGCCCGCGCTCGCCTGCGAGA                         <  1:751079/35‑1 (MQ=1)
          CGTGATTACACCGCCGCCCGCGCTCGCCTGCGAGA                         <  1:11079219/35‑1 (MQ=1)
          CGTGATTACACCGCCGCCCGCGCTCGCCTGCGAGA                         <  1:18135739/35‑1 (MQ=1)
           GTGATTACACCGCCGCCCGCGCTCGCCTGCGAGAA                        <  1:2122946/35‑1 (MQ=1)
           GTGATTACACCGCCGCCCGCGCTCGCCTGCGAGAA                        >  1:18432352/1‑35 (MQ=1)
           GTGATTACACCGCCGCCCGCGCTCGCCTGCGAGAA                        <  1:11978464/35‑1 (MQ=1)
            TGATTACACCGCCGCCCGCGCTCGCCTGCGAGAAA                       <  1:4677650/35‑1 (MQ=1)
            TGATTACACCGCCGCCCGCGCTCGCCTGCGAGAAA                       >  1:5969938/1‑35 (MQ=1)
             GATTACACCGCCGCCCGCGCTCGCCTGCGAGAAAG                      <  1:13799241/35‑1 (MQ=1)
             GATTACACCGCCGCCCGCGCTCGCCTGCGAGAAAG                      <  1:7190933/35‑1 (MQ=1)
             GATTACACCGCCGCCCGCGCTCGCCTGCGAGAAAG                      <  1:16011306/35‑1 (MQ=1)
             GATTACACCGCCGCCCGCGCTCGCCTGCGAGAAAG                      >  1:2976239/1‑35 (MQ=1)
              ATTACACCGCCGCCCGCGCTCGCCTGCGAGAAAGC                     >  1:5551677/1‑35 (MQ=1)
               TTACACCGCGGCCCGCGCTCGCCTGCGAGAAAGCG                    <  1:14551778/35‑1 (MQ=0)
               TTACACCGCCGCCCGCGCTCGCCTGCGCGAAAGCG                    >  1:16941772/1‑35 (MQ=0)
               TTACACCGCCGCCCGCGCTCGCCTGCGAGAAAGCG                    <  1:3293660/35‑1 (MQ=1)
               TTACACCGCCACCCGCGCTCGCCTGCGAGAAAGCG                    >  1:7160170/1‑35 (MQ=0)
                TACACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGG                   <  1:4452409/35‑1 (MQ=1)
                TACACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGG                   <  1:18504762/35‑1 (MQ=1)
                TACACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGG                   >  1:12243275/1‑35 (MQ=1)
                 ACACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGC                  <  1:13444572/35‑1 (MQ=1)
                  CACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCA                 <  1:16219915/35‑1 (MQ=1)
                  CACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCA                 >  1:15553471/1‑35 (MQ=1)
                  CACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCA                 <  1:781438/35‑1 (MQ=1)
                   ACCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAA                <  1:4919425/35‑1 (MQ=1)
                    CCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAA               >  1:15838473/1‑35 (MQ=1)
                    CCGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAA               >  1:13861578/1‑35 (MQ=1)
                     CGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAG              <  1:7067467/35‑1 (MQ=1)
                     CGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAG              >  1:8282089/1‑35 (MQ=1)
                     CGCCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAG              >  1:10201083/1‑35 (MQ=1)
                       CCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAG            >  1:12504089/1‑35 (MQ=1)
                       CCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAG            >  1:12561921/1‑35 (MQ=1)
                       CCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAG            >  1:14854461/1‑35 (MQ=1)
                       CCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAG            <  1:18303120/35‑1 (MQ=1)
                       CCGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAG            >  1:17068124/1‑35 (MQ=1)
                        CGCCCGCGCTCTCCTGCGAGAAAGCGGCAAAGAGG           >  1:16709739/1‑35 (MQ=0)
                        CGCCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGG           <  1:255719/35‑1 (MQ=1)
                          CCCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCA         <  1:5329223/35‑1 (MQ=1)
                           CCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAG        >  1:9051948/1‑35 (MQ=1)
                           CCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAG        >  1:7668130/1‑35 (MQ=1)
                           CCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAG        >  1:1504298/1‑35 (MQ=1)
                           CCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAG        >  1:15659755/1‑35 (MQ=1)
                           CCGCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAG        >  1:4019453/1‑35 (MQ=1)
                             GCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAA      >  1:6294773/1‑35 (MQ=1)
                             GCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAA      >  1:17652666/1‑35 (MQ=1)
                             GCGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAA      <  1:2489104/35‑1 (MQ=1)
                              CGCTTGCCTGCGAGAAAGCGGCAAAGAGGCAGAAG     >  1:8104157/1‑35 (MQ=0)
                              CGCTCGCCTGCGAGAAAGCGGCAAAGAGGCTGAAG     >  1:15518638/1‑35 (MQ=0)
                              CGCTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAG     <  1:1167521/35‑1 (MQ=1)
                               GCTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGC    >  1:15615881/1‑35 (MQ=1)
                                CTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCG   <  1:2557716/35‑1 (MQ=1)
                                CTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCG   <  1:1360931/35‑1 (MQ=1)
                                CTCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCG   <  1:322557/35‑1 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  >  1:3676093/1‑35 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  >  1:10214438/1‑35 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  >  1:11927322/1‑35 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  <  1:3020623/35‑1 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  >  1:13272914/1‑35 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  <  1:14312769/35‑1 (MQ=1)
                                 TCGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  >  1:6682560/1‑35 (MQ=1)
                                                                    
GCAACAACGACGTGATTACACCGCCGCCCGCGCT..................................  <  REL606/3616827‑3616794
..................................CGCCTGCGAGAAAGCGGCAAAGAGGCAGAAGCGG  <  REL606/3616922‑3616889

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 21 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG