New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 17045 =1 (0.020)23 (0.410) 20/64 1.3 95.8% intergenic (‑87/‑443) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 664688 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/664653‑664722
                                   |                                  
gggttaaagagagcgatataatagcggcgggtgctt                                    <  1:7395015‑M2/1‑1 (MQ=255)
gCGTGACCAGAAAGCCCGACCCGCTCCAGCAGtttt                                    <  1:3845854/36‑1 (MQ=37)
  gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt                                  <  1:5671265/36‑1 (MQ=255)
    gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc                                <  1:2553242/36‑1 (MQ=255)
     aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACt                               <  1:3688008/36‑1 (MQ=255)
      gCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg                              >  1:3137271/1‑36 (MQ=255)
      aagagagcgatataatagcggcgggtgctTGTACTg                              <  1:7374347‑M2/7‑1 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc                             <  1:3553756/36‑1 (MQ=255)
       cAGAAAGCCCGACACGCTCCAGCAGATTTGTACTGc                             >  1:4756219/1‑36 (MQ=255)
         gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc                           >  1:7693212/1‑36 (MQ=255)
          gagcgatataatagcggcgggtgctTGTACTGCAcc                          <  1:6386865‑M2/11‑1 (MQ=255)
          aaaGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc                          <  1:4827851/36‑1 (MQ=255)
           agcgatataatagcggcgggtgctTGTACTGCAccc                         <  1:6061881‑M2/12‑1 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc                         <  1:3195285/36‑1 (MQ=255)
           aaGCCCGACACGCTCCAGCAGTTTTGTACTGCAccc                         >  1:1201871/1‑36 (MQ=255)
            aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                        <  1:4524787/36‑1 (MQ=255)
            aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa                        <  1:1581936/36‑1 (MQ=255)
             gCCCGACACGCTCCAGCAGTTTTGTACTGCAccaga                       >  1:4604428/1‑33 (MQ=255)
             gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt                       <  1:2064338/36‑1 (MQ=255)
             gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt                       >  1:4686844/1‑36 (MQ=255)
              gatataatagctgcgggtgctTGTACTGCACCCAtt                      <  1:5056811‑M2/15‑1 (MQ=255)
               ccGACACGCTCCAGCAGTTTTGTACTGCACCCAttt                     >  1:5092475/1‑36 (MQ=255)
               atataatagcggcgggtgctTGTACTGCACCCAttt                     <  1:5476821‑M2/16‑1 (MQ=255)
                cGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt                    <  1:773826/36‑1 (MQ=255)
                cGACACGCTCCAGCAGTTTAGTACTGCACCCAtttt                    >  1:6572516/1‑36 (MQ=255)
                 gACACGCTCCAGCAGTTTTGTACTGCACCCATTttg                   >  1:3127857/1‑36 (MQ=255)
                 ataatagcggcgggtgctTGTACTGCACCCATTttg                   <  1:3171326‑M2/18‑1 (MQ=255)
                  taatagcggcgggtgctTGTACTGCACCCATTttgt                  <  1:1762547‑M2/19‑1 (MQ=255)
                  acacGCTCCAGCAGTTTTGTACTGCACCCATTttgt                  >  1:3311509/1‑36 (MQ=255)
                   aatagcggcgggtgctTGTACTGCACCCATTttgtt                 <  1:3487628‑M2/20‑1 (MQ=255)
                    acGCTCCAGNAGTTTTGTACTGCACCCATTttgttg                >  1:2961526/1‑36 (MQ=255)
                    acGCTCCAGCAGTTTTGTACTGCACCCATTttgttg                >  1:5388459/1‑36 (MQ=255)
                     cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTgg               >  1:3367510/1‑36 (MQ=255)
                      gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa              >  1:5258930/1‑36 (MQ=255)
                       gcggcgggtgctTGTACTGCACCCATTTTGTTGGAc             <  1:4570485‑M2/24‑1 (MQ=255)
                       gcggcgggtgctTGTACTGCACCCATTTTGTTGGAc             <  1:7508896‑M2/24‑1 (MQ=255)
                       cTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc             >  1:2038441/1‑36 (MQ=255)
                        cggcgggtgctTGTACTGCACCCATTTTGTTGGACg            <  1:496393‑M2/25‑1 (MQ=255)
                        cggcgggtgctTGTACTGCACCCATTTTGGTGGACg            >  1:7636243‑M2/12‑36 (MQ=255)
                         ggcgggtgctTGTACTGCACCCATTTTGTTGGACGa           >  1:5180996‑M2/11‑36 (MQ=255)
                         ggcgggtgctTGTACTGCACCCATTTTGTTGGACGa           >  1:6937639‑M2/11‑36 (MQ=255)
                          cagcagTTTTGTACTGCACCCATTTTGTTGGACGAt          >  1:1783691/1‑36 (MQ=255)
                           cgggtgctTGTACTGCACCCATTTTGTTGGACGATg         <  1:4539310‑M2/28‑1 (MQ=255)
                           agcatTTTTGTACTGCACCCATTTTGTTGGACGATg         <  1:4545025/36‑1 (MQ=255)
                           agcagTTTTGTACTGCACCCATTTTGTTGGACGATg         >  1:654386/1‑36 (MQ=255)
                            gggtgctTGTACTGCACCCATTTTGTTGGGCGATGa        <  1:3866278‑M2/29‑1 (MQ=255)
                            gggtgctTGTACTGCACCCATTTTGTTGGACGATGa        >  1:2693992‑M2/8‑36 (MQ=255)
                            gcagTTTTGTGCTGCACCCATTTTGTTGGACGATGa        <  1:5491141/36‑1 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATGa        <  1:7109578/36‑1 (MQ=255)
                            gcagTTTTGTACTGCACCCATTTTGTTGGACGATGa        <  1:6476976/36‑1 (MQ=255)
                             ggtgctTGTACTGCACCCATTTTGTTGGACGATGaa       <  1:6145410‑M2/30‑1 (MQ=255)
                             cagTTTTGTACTGCACCCATTTTGTTGGACGATGaa       >  1:4216103/1‑36 (MQ=255)
                              gtgctTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:2999233‑M2/6‑36 (MQ=255)
                              agTTTTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:751505/36‑1 (MQ=40)
                              agTTTTGTACTGCACCCATTTTGTTGGACGATGaaa      <  1:4216629/36‑1 (MQ=40)
                              agTTTTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:1869133/1‑36 (MQ=40)
                              agTTTTGTACTGCACCCATTTTGTTGGACGATGaaa      >  1:6084881/1‑36 (MQ=40)
                               tgctTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:202027‑M2/5‑36 (MQ=255)
                               tgctTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:4888000‑M2/5‑36 (MQ=255)
                               gTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt     >  1:7333715/1‑36 (MQ=38)
                               gTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt     <  1:3999878/36‑1 (MQ=38)
                                ttttGTACTTCACCCATTTTGTTGGACGATTAAATg    <  1:1180952/36‑1 (MQ=11)
                                ttttGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:5425927/1‑36 (MQ=35)
                                ttttGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:7772592/1‑36 (MQ=35)
                                gctTGTACTGCACCCATTTTGTTGGACGATGAAATg    >  1:4700836‑M2/4‑36 (MQ=255)
                                gctTGTACTGCACCCATTTTGTTGGACGATGAAATg    <  1:2592050‑M2/33‑1 (MQ=255)
                                 tttGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:6495402/1‑36 (MQ=32)
                                 tttGTACTGCACCCATTTTGTTGGACGATGAAATgg   >  1:2048891/1‑36 (MQ=32)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:7078743‑M2/2‑36 (MQ=255)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:5868392‑M2/35‑1 (MQ=255)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  >  1:5813638‑M2/2‑36 (MQ=255)
                                  tTGTACTGCACCCATTTTGTTGGACGATGAAATGGa  <  1:5731818‑M2/35‑1 (MQ=255)
                                   |                                  
GCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/664653‑664722

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 23 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG