New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3616794 =151 (1.070)140 (0.990) 55/68 0.3 45.2% coding (1872/3474 nt) bcsC cellulose synthase subunit
?REL606 = 3616922 189 (1.340)coding (1744/3474 nt) bcsC cellulose synthase subunit

Only 100 of 299 total aligned reads displayed.

TAGCTGGCTCCCGCGTCAGGACATTCTGATATGCAGCGCGGGCGGCGGTGTAATCACGTCGTTGTTGCG  >  REL606/3616760‑3616828
                                  |                                  
tAGCTGGCTCCCGCGTCAGGACATTCTGATATGCa                                    <  1:787514/35‑1 (MQ=255)
tAGCTGGCTCCCGCGTCAGGACATTCTGATATGCa                                    <  1:1641131/35‑1 (MQ=255)
tAGCTGGCTCCCGCGTCAGGACATTCTGATATGCa                                    >  1:12861723/1‑35 (MQ=255)
tAGCTGGCTCCCGCGTCAGGACATTCTGATATGCa                                    >  1:2082783/1‑35 (MQ=255)
ccgcttctgcctctttgccgctttctcgcaggcga                                    >  1:13272914‑M1/35‑35 (MQ=255)
ccgcttctgcctctttgccgctttctcgcaggcga                                    <  1:8948064‑M1/1‑1 (MQ=255)
ccgcttctgcctctttgccgctttctcgcaggcga                                    >  1:6682560‑M1/35‑35 (MQ=255)
 cgcttctgcctctttgccgctttctcgcaggcgAg                                   <  1:322557‑M1/2‑1 (MQ=255)
 aGCTGGCTCCCGCGTCAGGACATTCTGATATGCAg                                   >  1:2700892/1‑35 (MQ=255)
 aGCTGGCTCCCGCGTCAGGACATTCTGATATGCAg                                   <  1:7230492/35‑1 (MQ=255)
  gCTGGCTCCCGCGTCAGGACATTCTGATATGCAgc                                  <  1:12008197/35‑1 (MQ=255)
   cttctgcctctttgccgctttctcgcaggcgAgcg                                 <  1:1167521‑M1/4‑1 (MQ=255)
   cttctgcctctttgccgctttctcgcaggcgAgcg                                 <  1:18569776‑M1/4‑1 (MQ=255)
   cttcagcctctttgccgctttctcgcaggcgAgcg                                 >  1:15518638‑M1/32‑35 (MQ=255)
    ttctgcctctttgccgctttctcgcaggcgAgcgc                                >  1:6294773‑M1/31‑35 (MQ=255)
     ggCTCCCGCGTCAGGGCATTCTGATATGCAGcgcg                               <  1:1390843/35‑1 (MQ=255)
     ggCTCCCGCGTCAGGACATTCTGATATGCAGcgcg                               >  1:2156804/1‑35 (MQ=255)
      gCTCCCGCGTCAGGACATTCTGATATGCAGCgcgg                              >  1:10493966/1‑35 (MQ=255)
      gCTCCCGCGTCAGGACATTCTGATATGCAGCgcgg                              >  1:9778842/1‑35 (MQ=255)
      ctgcctctttgccgctttctcgcaggcgAGCgcgg                              >  1:4019453‑M1/29‑35 (MQ=255)
      ctgcctctttgccgctttctcgcaggcgAGCgcgg                              >  1:7513810‑M1/29‑35 (MQ=255)
      ctgcctctttgccgctttctcgcaggcgAGCgcgg                              <  1:17338874‑M1/7‑1 (MQ=255)
      ctgcctctttgccgctttctcgcaggcgAGCgcgg                              >  1:7668130‑M1/29‑35 (MQ=255)
      ctgcctctttgccgctttctcgcaggcgAGCgcgg                              >  1:1504298‑M1/29‑35 (MQ=255)
         cccGCGTCAGGACATTCTGATATGCAGCgcgggcg                           >  1:6179140/1‑35 (MQ=255)
         cccGCGTCAGGACATTCTGATATGCAGCgcgggcg                           <  1:18375984/35‑1 (MQ=255)
          ctctttgccgctttctcgcaggcgAGCgcgggcgg                          <  1:18303120‑M1/11‑1 (MQ=255)
          ctctttgccgctttctcgcaggcgAGCgcgggcgg                          >  1:17068124‑M1/25‑35 (MQ=255)
          ccGCGTCAGGACATTCTGATATGCAGCgcgggcgg                          <  1:16165749/35‑1 (MQ=255)
            gcgTCAGGACATTCTGATATGCAGCGCGGgcggcg                        <  1:14245215/35‑1 (MQ=255)
            gcgTCAGGACATTCTGATATGCAGCGCGGgcggcg                        >  1:1896848/1‑35 (MQ=255)
            gcgTCAGGACATTCTGATATGCAGCGCGGgcggcg                        <  1:2367115/35‑1 (MQ=255)
            gcgTCAGGACAGTCTGATATGGAGCGCGGgcggcg                        <  1:5422469/35‑1 (MQ=37)
            ctttgccgctttctcgcaggcgAGCGCGGgcggcg                        <  1:7067467‑M1/13‑1 (MQ=255)
             tttgccgctttctcgcaggcgAGCGCGGGcggcgg                       >  1:15838473‑M1/22‑35 (MQ=255)
             cgTCAGGACATTCTGATATGCAGCGCGGGcggcgg                       <  1:3476743/35‑1 (MQ=255)
              ttgccgctttctcgcaggcgAGCGCGGGCGGCGgt                      <  1:4919425‑M1/15‑1 (MQ=255)
              gTCAGGACATTCTGATATGCAGCGCGGGCGGCGgt                      <  1:280783/35‑1 (MQ=255)
               tgccgctttctcgcaggcgAGCGCGGGCGGCGgtg                     <  1:781438‑M1/16‑1 (MQ=255)
               tCAGGACATTCTGATATGCAGCGCGGGCGGCGgtg                     >  1:1175857/1‑35 (MQ=255)
               tCAGGACATTCTGATATGCAGCGCGGGCGGCGgtg                     >  1:12279018/1‑35 (MQ=255)
                cAGGACATTCTGATATGCAGCGCGGGCGGCGgtgt                    >  1:15700331/1‑35 (MQ=255)
                cAGGACATTCTGATATGCAGCGCGGGCGGCGgtgt                    >  1:253959/1‑35 (MQ=255)
                cAGGACATTCTGATATGCAGCGCGGGCGGCGgtgt                    >  1:953671/1‑35 (MQ=255)
                 aGGACATTCTGATATGCAGCGCGGGCGGCGGTGTa                   >  1:10357627/1‑35 (MQ=255)
                 aGGACACTCTGATATGCAGCGCGGGCGGCGGTGTa                   >  1:8286765/1‑35 (MQ=255)
                  ggACATTCTGATATGCAGCGCGGGCGGCGGTGTaa                  <  1:13581780/35‑1 (MQ=255)
                  ggACATTCTGATATGCAGCGCGGGCGGCGGTGTaa                  >  1:14905198/1‑35 (MQ=255)
                  cgctttctcgcaggcgAGCGCGGGCGGCGGTGTaa                  <  1:3293660‑M1/19‑1 (MQ=255)
                  cgctttcgcgcaggcgAGCGCGGGCGGCGGTGTaa                  >  1:16941772‑M1/17‑35 (MQ=255)
                   gctttctcgcaggcgAGCGCGGGCGGCGGTGTAAt                 >  1:5551677‑M1/16‑35 (MQ=255)
                    ctttctcgcaggcgAGCGCGGGCGGCGGTGTAATc                <  1:13799241‑M1/21‑1 (MQ=255)
                    ctttctcgcaggcgAGCGCGGGCGGCGGTGTAATc                <  1:16011306‑M1/21‑1 (MQ=255)
                    ctttctcgcaggcgAGCGCGGGCGGCGGTGTAATc                >  1:12443763‑M1/15‑35 (MQ=255)
                    ctttctcgcaggcgAGCGCGGGCGGCGGTGTAATc                >  1:2976239‑M1/15‑35 (MQ=255)
                    aCATTCTGATATGCGGCGCGGGCGGCGGTGTAATc                <  1:14069868/35‑1 (MQ=255)
                    aCATTCTGATATGCAGCGCGGGCGGCGGTGGAATc                >  1:11952976/1‑35 (MQ=255)
                     cATGCTGATATGCAGCGCGGGCGGCGGTGTAATCa               <  1:14700412/35‑1 (MQ=255)
                       ttCTGATATGCAGCGCGGGCGGCGGTGTAATCAcg             >  1:8131682/1‑35 (MQ=255)
                       ttCTGATATGCAGCGCGGGCGGCGGTGTAATCAcg             <  1:10602393/35‑1 (MQ=255)
                       ttCTGATATGCAGCGCGGGCGGCGGTGTAATCAcg             >  1:4895668/1‑35 (MQ=255)
                       tctcgcaggcgAGCGCGGGCGGCGGTGTAATCAcg             <  1:18135739‑M1/24‑1 (MQ=255)
                       tctcgcaggcgAGCGCGGGCGGCGGTGTAATCAcg             <  1:11079219‑M1/24‑1 (MQ=255)
                        tCTGATATGCAGCGCGGGCGGCGGTGTAATCAcgt            >  1:6939683/1‑35 (MQ=255)
                        tCTGATATGCAGCGCGGGCGGCGGTGTAATCAcgt            <  1:10148938/35‑1 (MQ=255)
                        tCTGATATGCAGCGCGGGCGGCGGTGTAATCAcgt            >  1:4570396/1‑35 (MQ=255)
                         tcgcaggcgAGCGCGGGCGGCGGTGTAATCAcgtc           >  1:8688160‑M1/10‑35 (MQ=255)
                         tcgcaggcgAGCGCGGGCGGCGGTGTAATCAcgtc           <  1:5187546‑M1/26‑1 (MQ=255)
                         cTGATATGCAGCGCGGGCGGCGGTGTAATCAcgtc           >  1:18766819/1‑35 (MQ=255)
                          tGATATGCAGCGCGGGCGGCGGTGTAATCAcgtcg          <  1:7019450/35‑1 (MQ=255)
                          tGATATGCAGCGCGGGCGGCGGTGTAATCAcgtcg          <  1:10090522/35‑1 (MQ=255)
                          cgcaggcgAGCGCGGGCGGCGGTGTAATCAcgtcg          >  1:9250995‑M1/9‑35 (MQ=255)
                          cgcaggcgAGCGCGGGCGGCGGCGTAATCAcgtcg          <  1:16230853‑M1/27‑1 (MQ=255)
                           gcaggcgAGCGCGGGCGGCGGTGTAATCAcgtcgt         >  1:14361900‑M1/8‑35 (MQ=255)
                            caggcgAGCGCGGGCGGCGGTGTAATCACGTCgtt        <  1:5056437‑M1/29‑1 (MQ=255)
                            caggcgAGCGCGGGCGGCGGTGTAATCACGTCgtt        >  1:5873852‑M1/7‑35 (MQ=255)
                            caggcgAGCGCGGGCGGCGGTGTAATCACGTCgtt        >  1:10259259‑M1/7‑35 (MQ=255)
                            atatGCAGCGCGGGCGGCGGTGTAATCACGTCgtt        >  1:16680892/1‑35 (MQ=255)
                            atatGCAGCGCGGGCGGCGGTGTAATCACGTCgtt        <  1:14823071/35‑1 (MQ=255)
                            atatGCAGCGCGGGCGGCGGTGTAATCACGTCgtt        >  1:8056757/1‑35 (MQ=255)
                             tatGCAGCGCGGGCGGCGGTGTAATCACGTCgttg       <  1:4441766/35‑1 (MQ=255)
                             tatGCAGCGCGGGCGGCGGTGTAATCACGTCgttg       <  1:3629717/35‑1 (MQ=255)
                             aggcgAGCGCGGGCGGCGGTGTAATCACGTCgttg       >  1:1450508‑M1/6‑35 (MQ=255)
                             aggcgAGCGCGGGCGGCGGTGTAATCACGTCgttg       >  1:17495607‑M1/6‑35 (MQ=255)
                             aggcgAGCGCGGGCGGCGGTGTAATCACGTCgttg       >  1:13074975‑M1/6‑35 (MQ=255)
                              ggcgAGCGCGGGCGGCGGTGTAATCACGTCgttgt      >  1:82668‑M1/5‑35 (MQ=255)
                              ggcgAGCGCGGGCGGCGGTGTAATCACGTCgttgt      >  1:718743‑M1/5‑35 (MQ=255)
                              ggcgAGCGCGGGCGGCGGTGTAATCACGTCgttgt      >  1:3691649‑M1/5‑35 (MQ=255)
                              atGCAGCGCGGGCGGCGGTGTAATCACGTCgttgt      <  1:6006887/35‑1 (MQ=255)
                               tGCAGCGCGGGCGGCGGTGTAATCACGTCgttgtt     >  1:2447836/1‑35 (MQ=255)
                               gcgAGCGCGGGCGGGGGTGTAATCACGTCgttgtt     >  1:14482570‑M1/4‑35 (MQ=255)
                               gcgAGCGCGGGCGGCGGTGTAATCACGTCgttgtt     >  1:16875839‑M1/4‑35 (MQ=255)
                               gcgAGCGCGGGCGGCGGTGTAATCACGTCgttgtt     <  1:15131365‑M1/32‑1 (MQ=255)
                               gcgAGCGCGGGCGGCGGTGTAAGCACGTCgttgtt     >  1:1146427‑M1/4‑35 (MQ=255)
                                gCAGCGCGGGCGGCGGTGTAATCACGTCGttgttg    >  1:18259964/1‑35 (MQ=255)
                                cgAGCGCGGGCGGCGGTGTAATCACGTCGttgttg    >  1:17387194‑M1/3‑35 (MQ=255)
                                cgAGCGCGGGCGGCGGTGTAATCACGTCGttgttg    <  1:15573731‑M1/33‑1 (MQ=255)
                                 cAGCGCGGGCGGCGGTGTAATCACGTTGTTGTTgc   >  1:13686129/1‑35 (MQ=255)
                                 cAGCGCGGGCGGCGGTGTAATCACGTCGTTGTTgc   <  1:17683363/35‑1 (MQ=255)
                                  aGCGCGGGCGGCGGTGTAATCACGTCGTTGTTgcg  >  1:15265716/1‑35 (MQ=255)
                                  |                                  
TAGCTGGCTCCCGCGTCAGGACATTCTGATATGCAGCGCGGGCGGCGGTGTAATCACGTCGTTGTTGCG  >  REL606/3616760‑3616828

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 21 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG