New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 17045 =1 (0.020)23 (0.410) 20/64 1.3 95.8% intergenic (‑87/‑443) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 664688 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

GGGTTAAAGAGAGCGATATAATAGCGGCGGGTGCTTG.................................  <  REL606/17079‑17045
..................................TTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/664688‑664722
                                                                      
      AAGAGAGCGATATAATAGCGGCGGGTGCTTGTACTG                              <  1:7374347/36‑1 (MQ=255)
          GAGCGATATAATAGCGGCGGGTGCTTGTACTGCACC                          <  1:6386865/36‑1 (MQ=255)
           AGCGATATAATAGCGGCGGGTGCTTGTACTGCACCC                         <  1:6061881/36‑1 (MQ=255)
              GATATAATAGCTGCGGGTGCTTGTACTGCACCCATT                      <  1:5056811/36‑1 (MQ=255)
               ATATAATAGCGGCGGGTGCTTGTACTGCACCCATTT                     <  1:5476821/36‑1 (MQ=255)
                 ATAATAGCGGCGGGTGCTTGTACTGCACCCATTTTG                   <  1:3171326/36‑1 (MQ=255)
                  TAATAGCGGCGGGTGCTTGTACTGCACCCATTTTGT                  <  1:1762547/36‑1 (MQ=255)
                   AATAGCGGCGGGTGCTTGTACTGCACCCATTTTGTT                 <  1:3487628/36‑1 (MQ=255)
                       GCGGCGGGTGCTTGTACTGCACCCATTTTGTTGGAC             <  1:7508896/36‑1 (MQ=255)
                       GCGGCGGGTGCTTGTACTGCACCCATTTTGTTGGAC             <  1:4570485/36‑1 (MQ=255)
                        CGGCGGGTGCTTGTACTGCACCCATTTTGTTGGACG            <  1:496393/36‑1 (MQ=255)
                        CGGCGGGTGCTTGTACTGCACCCATTTTGGTGGACG            >  1:7636243/1‑36 (MQ=255)
                         GGCGGGTGCTTGTACTGCACCCATTTTGTTGGACGA           >  1:5180996/1‑36 (MQ=255)
                         GGCGGGTGCTTGTACTGCACCCATTTTGTTGGACGA           >  1:6937639/1‑36 (MQ=255)
                           CGGGTGCTTGTACTGCACCCATTTTGTTGGACGATG         <  1:4539310/36‑1 (MQ=255)
                            GGGTGCTTGTACTGCACCCATTTTGTTGGGCGATGA        <  1:3866278/36‑1 (MQ=255)
                            GGGTGCTTGTACTGCACCCATTTTGTTGGACGATGA        >  1:2693992/1‑36 (MQ=255)
                             GGTGCTTGTACTGCACCCATTTTGTTGGACGATGAA       <  1:6145410/36‑1 (MQ=255)
                              GTGCTTGTACTGCACCCATTTTGTTGGACGATGAAA      >  1:2999233/1‑36 (MQ=40)
                               TGCTTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:4888000/1‑36 (MQ=38)
                               TGCTTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:202027/1‑36 (MQ=38)
                                GCTTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:4700836/1‑36 (MQ=35)
                                GCTTGTACTGCACCCATTTTGTTGGACGATGAAATG    <  1:2592050/36‑1 (MQ=35)
                                                                      
GGGTTAAAGAGAGCGATATAATAGCGGCGGGTGCTTG.................................  <  REL606/17079‑17045
..................................TTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/664688‑664722

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 23 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG