New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 169740 (0.000)40 (0.770) 29/60 0.4 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................  >  REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774435‑2774468
                                                                        
     CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT                                 >  1:5240032/1‑36 (MQ=32)
      TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA                                <  1:1254564/36‑1 (MQ=35)
      TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA                                <  1:955183/36‑1 (MQ=35)
      TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA                                <  1:1966498/36‑1 (MQ=35)
      TACATGTGTTCAGCATATAGGGGGCCNCGGGTTGTA                                <  1:2933894/36‑1 (MQ=25)
       ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                               >  1:214584/1‑36 (MQ=38)
       ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                               <  1:4023220/36‑1 (MQ=38)
         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                             <  1:6563735/36‑1 (MQ=38)
         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                             >  1:6474236/1‑36 (MQ=38)
         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                             <  1:7059237/36‑1 (MQ=38)
         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                             >  1:7261821/1‑36 (MQ=38)
           GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                           <  1:5334658/36‑1 (MQ=38)
           GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                           >  1:6503112/1‑36 (MQ=38)
           GTGTTCAGCATATAGGGGGCCTCGGGTTGTAATGAC                           >  1:5304637/1‑36 (MQ=255)
            TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC                          >  1:253066/1‑36 (MQ=38)
            TGTTCAGCATATAGGGGGCCTCGGGTTGTACTGACC                          <  1:1057428/36‑1 (MQ=38)
             GTTCAGCATATAGGGGGCCTCGGGTTGTACTGACCC                         <  1:3991510/36‑1 (MQ=38)
                 AGCATATAGGGGGCCTCGGGTTGTACTGACCCCAAA                     <  1:4979480/36‑1 (MQ=255)
                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                    >  1:6088939/1‑36 (MQ=255)
                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                    >  1:7027813/1‑36 (MQ=255)
                   CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA                   >  1:944497/1‑36 (MQ=255)
                   CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA                   >  1:7211107/1‑36 (MQ=255)
                    ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG                  >  1:3583971/1‑36 (MQ=255)
                      ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTT                >  1:2812223/1‑36 (MQ=255)
                      ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTT                >  1:4424410/1‑36 (MQ=255)
                      ATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTT                <  1:1390360/36‑1 (MQ=255)
                       TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTG               <  1:7793104/36‑1 (MQ=255)
                       TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTG               >  1:1848548/1‑36 (MQ=255)
                        AGGGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGG              <  1:6983335/36‑1 (MQ=255)
                          GGGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGAC            <  1:7664972/36‑1 (MQ=255)
                           GGGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA           >  1:7153219/1‑36 (MQ=255)
                            GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG          >  1:99498/1‑36 (MQ=255)
                            GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG          <  1:1015427/36‑1 (MQ=255)
                               CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA       <  1:7508173/36‑1 (MQ=255)
                               CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA       >  1:7105026/1‑36 (MQ=255)
                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA      >  1:7252821/1‑36 (MQ=255)
                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA      <  1:4621947/36‑1 (MQ=255)
                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA      >  1:4151555/1‑36 (MQ=255)
                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA      >  1:1774428/1‑36 (MQ=255)
                                  GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC    >  1:7380887/1‑36 (MQ=38)
                                                                        
GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG................................  >  REL606/16937‑16974
...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774435‑2774468

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG