New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 169740 (0.000)40 (0.770) 29/60 0.4 100% intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

Only 100 of 194 total aligned reads displayed.

TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  REL606/2774400‑2774470
                                   |                                   
ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                     >  1:5047616/1‑36 (MQ=255)
 tctacatgtgttcagcatatagggggcctcgggtTg                                    >  1:826005‑M2/35‑36 (MQ=255)
 tctacatgtgttcagcatatagggggcctcgggtTg                                    <  1:1900196‑M2/2‑1 (MQ=255)
 gagacccgcacgtttcatcgccgcccgataacctTg                                    <  1:247477‑M1/2‑1 (MQ=255)
  ctacatgtgttcagcatatagggggcctcgggtTGt                                   >  1:5240032‑M2/34‑36 (MQ=255)
  agacccgcacgtttcatcgccgcccgataacctTGt                                   >  1:6071973‑M1/34‑36 (MQ=255)
  agacccgcacgtttcatcgccgcccgataacctTGt                                   >  1:2624216‑M1/34‑36 (MQ=255)
   tacatgtgttcagcatatagggggcctcgggtTGTa                                  <  1:1254564‑M2/4‑1 (MQ=255)
   tacatgtgttcagcatatagggggccncgggtTGTa                                  <  1:2933894‑M2/4‑1 (MQ=255)
   gacccgcacgtttcatcgccgcccgataacctTGTa                                  >  1:5644669‑M1/33‑36 (MQ=255)
   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                  <  1:2739144/36‑1 (MQ=255)
    acatgtgttcagcatatagggggcctcgggtTGTAc                                 <  1:4023220‑M2/5‑1 (MQ=255)
    acatgtgttcagcatatagggggcctcgggtTGTAc                                 >  1:214584‑M2/32‑36 (MQ=255)
    aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                 >  1:2658843/1‑36 (MQ=255)
    aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                 >  1:1893598/1‑36 (MQ=255)
     cccgcacgtttcatcgccgcccgataacctTGTACt                                >  1:1506440‑M1/31‑36 (MQ=255)
     cccgcacgtttcatcgccgcccgataacctTGTACt                                <  1:5718066‑M1/6‑1 (MQ=255)
     cccgcacgtttcatcgccgcccgataacctTGTACt                                >  1:6543738‑M1/31‑36 (MQ=255)
     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                                >  1:6757429/1‑36 (MQ=255)
     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGGACt                                >  1:1243108/1‑36 (MQ=255)
      ccgcacgtttcatcgccgcccgataacctTGTACTg                               >  1:4060702‑M1/30‑36 (MQ=255)
      atgtgttcagcatatagggggcctcgggtTGTACTg                               >  1:7261821‑M2/30‑36 (MQ=255)
       cgcacgtttcatcgccgcccgataacctTGTACTGa                              <  1:316592‑M1/8‑1 (MQ=255)
        gtgttcagcatatagggggcctcgggtTGTACTGAc                             >  1:6503112‑M2/28‑36 (MQ=255)
        gtgttcagcatatagggggcctcgggtTGTACTGAc                             <  1:5334658‑M2/9‑1 (MQ=255)
        gcacgtttcatcgccgcccgataacctTGTACTGAc                             <  1:6614151‑M1/9‑1 (MQ=255)
        gcacgtttcatcgccgcccgataacctTGTACTGAc                             >  1:3602506‑M1/28‑36 (MQ=255)
        gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                             >  1:6974200/1‑36 (MQ=255)
         tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                            <  1:6227616/36‑1 (MQ=255)
         tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                            >  1:2998932/1‑36 (MQ=255)
         tgttcagcatatagggggcctcgggtTGTACTGAcc                            <  1:1057428‑M2/10‑1 (MQ=255)
         tgttcagcatatagggggcctcgggtTGTACTGAcc                            >  1:253066‑M2/27‑36 (MQ=255)
         cacgtttcatcgccgcccgataacctTGTACTGaca                            <  1:6384982‑M1/10‑2 (MQ=255)
         cacgtttcatcgccgcccgataacctTGTACCGAcc                            <  1:146272‑M1/10‑1 (MQ=255)
           tGGGTTCGAACNTAAGCCTCAGGTTGTACTGAcccc                          >  1:2264148/1‑36 (MQ=255)
           cgtttcatcgccgcccgataacctTGTACTGAcccc                          >  1:6880331‑M1/25‑36 (MQ=255)
            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                         <  1:203439/36‑1 (MQ=255)
              ttcatcgccgcccgataacctTGTACTGACCCCaaa                       >  1:6889397‑M1/22‑36 (MQ=255)
              ttcatcgccgcccgataacctTGTACTGACCCCaaa                       <  1:1742517‑M1/15‑1 (MQ=255)
              gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                       <  1:5479395/36‑1 (MQ=255)
              gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                       >  1:2050200/1‑36 (MQ=255)
              gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                       <  1:2413656/36‑1 (MQ=255)
              agcatatagggggcctcgggtTGTACTGACCCCaaa                       <  1:4979480‑M2/15‑1 (MQ=255)
               gcatatagggggcctcgggtTGTACTGACCCCaaaa                      >  1:7027813‑M2/21‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                     >  1:3987363/1‑36 (MQ=255)
                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                     <  1:2383454/36‑1 (MQ=255)
                catcgccgcccgataacctTGTACTGACCCCaaaaa                     <  1:4477828‑M1/17‑1 (MQ=255)
                catatagggggcctcgggtTGTACTGACCCCaaaaa                     >  1:944497‑M2/20‑36 (MQ=255)
                catatagggggcctcgggtTGTACTGACCCCaaaaa                     >  1:7211107‑M2/20‑36 (MQ=255)
                 cGAACGTAAGCCTCAGTTTGTACTGACCCCAAAAAg                    <  1:7544997/36‑1 (MQ=255)
                 atcgccgcccgataacctTGCACTGACCCCAAAAAg                    <  1:875359‑M1/18‑1 (MQ=255)
                  tcgccgcccgataacctTGTACTGACCCCAAAAaga                   <  1:7837333‑M1/19‑2 (MQ=255)
                   atagggggcctcgggtTGTACTGACCCCAAAAAGtt                  >  1:2812223‑M2/17‑36 (MQ=255)
                   atagggggcctcgggtTGTACTGACCCCAAAAAGtt                  <  1:1390360‑M2/20‑1 (MQ=255)
                   aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt                  >  1:6599842/1‑36 (MQ=255)
                    tagggggcctcgggtTGTACTGACCCCAAAAAGTTg                 >  1:1848548‑M2/16‑36 (MQ=255)
                     ccgcccgataacctTGTACTGACCCCAAAAAGTTgg                >  1:4607558‑M1/15‑36 (MQ=255)
                     ccgcccgataacctTGTACTGACCCCAAAAAGTTgg                >  1:148555‑M1/15‑36 (MQ=255)
                     cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg                >  1:2110666/1‑36 (MQ=255)
                      cgcccgataacctTGTACTGACCCCAAAAAGTTGGa               <  1:6333453‑M1/23‑1 (MQ=255)
                        gggcctcgggtTGTACTGACCCCAAAAAGTTGGACa             >  1:7153219‑M2/12‑36 (MQ=255)
                        cccgataacctTGTACTGACCCCAAAAAGTTGGACa             <  1:1328019‑M1/25‑1 (MQ=255)
                         ggcctcgggtTGTACTGACCCCAAAAAGTTGGACAg            <  1:1015427‑M2/26‑1 (MQ=255)
                         aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg            <  1:6356824/36‑1 (MQ=255)
                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt           <  1:2497989/36‑1 (MQ=255)
                           ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt          >  1:3447300/1‑36 (MQ=255)
                            ctcgggtTGTACTGACCCCAAAAAGTTGGACAGTTa         >  1:7105026‑M2/8‑36 (MQ=255)
                            cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa         >  1:7787065/1‑36 (MQ=255)
                            ataacctTGTACTGACCCCAAAAAGTTGGACAGTTa         >  1:61815‑M1/8‑36 (MQ=255)
                             tcgggtTGTACTGACCCCAAAAAGTTGGACAGTTaa        <  1:4621947‑M2/30‑1 (MQ=255)
                             tcgggtTGTACTGACCCCAAAAAGTTGGACAGTTaa        >  1:4151555‑M2/7‑36 (MQ=255)
                             taacctTGTACTGACCCCAAAAAGTTGGACAGTTaa        <  1:5990768‑M1/30‑1 (MQ=255)
                             taacctTGTACTGACCCCAAAAAGTTGGACAGTTaa        >  1:1965907‑M1/7‑36 (MQ=255)
                             tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTGaa        >  1:6826934/1‑36 (MQ=255)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa       >  1:6830083/1‑36 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa       <  1:4834394/36‑1 (MQ=38)
                              cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa       <  1:7400740/36‑1 (MQ=38)
                              aacctTGTACTGACCCCAAAAAGTTGGACAGTTaaa       >  1:780083‑M1/6‑36 (MQ=255)
                               gggtTGTACTGACCCCAAAAAGTTGGACAGTTAAac      >  1:7380887‑M2/5‑36 (MQ=255)
                               acctTGTACTGACCCCAAAAAGTTGGACAGTTAAac      >  1:3663821‑M1/5‑36 (MQ=255)
                               acctTGTACTGACCCCAAAAAGTTGGACAGTTAAac      <  1:653208‑M1/32‑1 (MQ=255)
                               aGGTTTTACTGACCCCAAAAAGTTGGACAGTTAAac      <  1:2647652/36‑1 (MQ=255)
                               aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac      <  1:3275198/36‑1 (MQ=38)
                                cctTGTACTGACCCCAAAAAGTTGGACAGTTAAaca     >  1:5879169‑M1/4‑36 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac    >  1:3375690‑M2/3‑36 (MQ=255)
                                 gtTGTACTGACCCCAAAAAGTTGGACAGTTAAacac    <  1:2577325‑M2/34‑1 (MQ=255)
                                 ctTGTACTGACCCCAAAAAGTTGGACNGTTAAacac    >  1:2914334‑M1/3‑36 (MQ=255)
                                 ctTGTACTGACCCCAAAAAGTAGGACAGTTAAacac    <  1:4896419‑M1/34‑1 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg   >  1:764278‑M1/2‑36 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg   <  1:7746558‑M1/35‑1 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg   <  1:956836‑M1/35‑1 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg   >  1:2409062‑M1/2‑36 (MQ=255)
                                  tTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg   >  1:4914673‑M1/2‑36 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  >  1:2186389‑M1/1‑36 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  >  1:7251442‑M1/1‑36 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  <  1:373635‑M1/36‑1 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  >  1:1977467‑M1/1‑36 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  <  1:4349960‑M1/36‑1 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  >  1:1143548‑M1/1‑36 (MQ=255)
                                   TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa  <  1:4729642‑M1/36‑1 (MQ=255)
                                   |                                   
TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA  >  REL606/2774400‑2774470

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 23 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG