Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3549953–3551293 3553465–3552318 1026–3513 50 [45] [48] 52 rhsB rhsB element core protein RshB

TGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGG  >  REL606/3553451‑3553566
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tGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACCACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGa                 >  1:2679822/1‑101 (MQ=11)
tGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGa                 >  2:2490051/1‑101 (MQ=11)
tGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGa                 >  1:3256389/1‑101 (MQ=11)
 gCCGGGGCAACACTATGATGAGGAGTCCGGCCTTTATCACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGAc                <  1:1930833/101‑1 (MQ=11)
  ccGGGGCAGCAGTATGATGAGGAGTCCGGNCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACt               <  1:3966307/101‑1 (MQ=17)
  ccGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACt               <  2:3287407/101‑1 (MQ=32)
  ccGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACt               <  2:1919540/101‑1 (MQ=32)
  ccGGGGCAGCAGTATAATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGCCCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACt               <  2:585395/101‑1 (MQ=12)
   cGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTg              >  2:1508760/1‑101 (MQ=32)
   cGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTg              >  2:1403556/1‑101 (MQ=32)
   cGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTg              >  2:3149438/1‑101 (MQ=32)
    ggggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGa             >  1:3113369/1‑101 (MQ=32)
    ggggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGa             >  2:416510/1‑101 (MQ=32)
      ggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAg           <  2:2639298/101‑1 (MQ=32)
      ggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAg           <  2:1091682/101‑1 (MQ=32)
      ggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAg           <  1:977868/101‑1 (MQ=32)
      ggCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAg           <  1:496573/101‑1 (MQ=32)
       gcagcaTTATGATTACGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgg          <  1:1387006/101‑1 (MQ=255)
       gcagcaGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCTATATATCACTCAGGATCCGATTGGACTGAAgg          >  1:1604268/1‑101 (MQ=17)
       gcagcaGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAGgg          >  2:4055027/1‑101 (MQ=17)
       gcagcaGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgg          <  1:4410365/101‑1 (MQ=32)
        cagcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggg         <  1:1737836/101‑1 (MQ=32)
        cagcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggg         <  1:1514281/101‑1 (MQ=32)
        cagcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggg         <  1:900311/101‑1 (MQ=32)
        cagcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggg         >  2:1695220/1‑101 (MQ=32)
         agcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggg        >  1:3740405/1‑101 (MQ=32)
         agcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggg        <  1:3700241/101‑1 (MQ=32)
         agcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggg        <  1:1467461/101‑1 (MQ=32)
         agcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggg        <  2:48672/101‑1 (MQ=32)
          gcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggggg       <  1:3965293/101‑1 (MQ=32)
          gcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggggg       <  1:516468/101‑1 (MQ=32)
          gcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggggg       <  2:4389683/101‑1 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      >  2:3210536/1‑101 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      >  2:1323491/1‑101 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      <  2:3432720/101‑1 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      <  1:767643/101‑1 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      >  2:3575883/1‑101 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      <  2:3945755/101‑1 (MQ=32)
           cagTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAgggggg      <  2:4422693/101‑1 (MQ=32)
            agTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGa     >  2:715960/1‑101 (MQ=32)
            agTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGa     >  1:4056660/1‑101 (MQ=32)
            agTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGa     <  1:3311381/101‑1 (MQ=32)
            agTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATAACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAggggggt     >  1:2140304/1‑100 (MQ=17)
             gTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGGGATAGATCACTCAGGATCCGATTGGACTGAGGGGGGGag    >  1:1186842/1‑100 (MQ=255)
             gTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGAt    <  2:1837115/101‑1 (MQ=32)
             gTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGAt    <  2:1651799/101‑1 (MQ=32)
             gTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGAt    <  1:2277709/101‑1 (MQ=32)
             gTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGAt    <  1:1455488/101‑1 (MQ=32)
               atgatgAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATgg  <  2:1112061/101‑1 (MQ=32)
               atgatgAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATgg  <  1:467197/101‑1 (MQ=32)
               atgatgAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATgg  >  1:3193876/1‑101 (MQ=32)
               atgatgAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATgg  <  1:2089141/101‑1 (MQ=33)
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TGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGG  >  REL606/3553451‑3553566

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG