- Creating animations for visualizing time resolved data.
- Rename files via command line
How to use sed to rename multiple files in a single directory. - Mass File Extraction
Simple script for 'un-tar'ing and 'un-zip'ing all .tar.gz files in a single directory. - Cloning DCAMP repository
Instructions for DCAMP repository, and getting permissions to push back to the repository. - Generate Genome Diff (.gd) Files From .fastq Files
Instructions for generating .gd files from .fastq files. - Trimmomatic Commands for Trimming Adapter Sequences
Command line tools for trimming adapter sequence from NGS reads (current method). - Flexbar Commands for Trimming Adapter Sequences
Command line tools for trimming adapter sequence from NGS reads (deprecated method). - Running breseq on TACC
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